Multiple sequence alignment - TraesCS6B01G408600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G408600 chr6B 100.000 3923 0 0 1 3923 682663333 682659411 0.000000e+00 7245.0
1 TraesCS6B01G408600 chr6B 78.382 1397 272 21 1195 2571 682742783 682741397 0.000000e+00 880.0
2 TraesCS6B01G408600 chr6B 81.285 903 135 22 2104 2988 682707930 682707044 0.000000e+00 701.0
3 TraesCS6B01G408600 chr6B 73.944 1942 375 81 1078 2949 682417765 682419645 0.000000e+00 662.0
4 TraesCS6B01G408600 chr6B 78.072 529 88 16 2467 2971 683226697 683226173 3.810000e-80 309.0
5 TraesCS6B01G408600 chr6B 78.744 207 31 12 254 450 30284013 30284216 4.120000e-25 126.0
6 TraesCS6B01G408600 chr6A 94.515 2771 112 17 1175 3923 595664898 595662146 0.000000e+00 4239.0
7 TraesCS6B01G408600 chr6A 88.000 250 25 5 850 1096 595665010 595664763 1.380000e-74 291.0
8 TraesCS6B01G408600 chr6D 95.138 905 42 1 2081 2985 450168348 450167446 0.000000e+00 1426.0
9 TraesCS6B01G408600 chr6D 81.093 1756 292 30 1173 2900 450212574 450210831 0.000000e+00 1367.0
10 TraesCS6B01G408600 chr6D 97.106 622 18 0 1252 1873 450168968 450168347 0.000000e+00 1050.0
11 TraesCS6B01G408600 chr6D 73.770 1971 395 82 1078 2983 449844687 449842774 0.000000e+00 664.0
12 TraesCS6B01G408600 chr6D 74.495 1337 245 78 1698 2984 449817901 449816611 3.520000e-135 492.0
13 TraesCS6B01G408600 chr6D 92.188 320 24 1 850 1168 450169288 450168969 5.980000e-123 451.0
14 TraesCS6B01G408600 chr6D 79.006 624 94 21 2364 2969 452081644 452081040 3.670000e-105 392.0
15 TraesCS6B01G408600 chr6D 76.543 324 40 23 19 311 137799583 137799265 1.140000e-30 145.0
16 TraesCS6B01G408600 chr6D 79.602 201 29 10 47 240 97018590 97018395 2.460000e-27 134.0
17 TraesCS6B01G408600 chr6D 80.255 157 16 7 662 818 450169430 450169289 1.930000e-18 104.0
18 TraesCS6B01G408600 chr3D 79.421 311 45 15 8 308 583003022 583003323 6.650000e-48 202.0
19 TraesCS6B01G408600 chr3D 74.572 409 82 17 66 461 90776915 90777314 4.060000e-35 159.0
20 TraesCS6B01G408600 chr3D 83.951 162 22 4 302 461 66144330 66144489 6.790000e-33 152.0
21 TraesCS6B01G408600 chr3D 74.115 452 76 31 19 457 340341218 340341641 8.780000e-32 148.0
22 TraesCS6B01G408600 chr7D 82.258 186 22 8 19 196 113882376 113882558 2.440000e-32 150.0
23 TraesCS6B01G408600 chr7D 81.868 182 26 5 19 196 41162443 41162265 3.160000e-31 147.0
24 TraesCS6B01G408600 chr7D 80.000 180 20 10 287 461 94645937 94646105 6.890000e-23 119.0
25 TraesCS6B01G408600 chr5D 75.064 389 60 26 3 376 358083526 358083160 3.160000e-31 147.0
26 TraesCS6B01G408600 chr5D 75.290 259 44 16 145 392 3899262 3899013 5.360000e-19 106.0
27 TraesCS6B01G408600 chr2A 80.288 208 29 11 108 308 632603245 632603043 3.160000e-31 147.0
28 TraesCS6B01G408600 chr2A 80.899 178 24 9 22 189 683579657 683579480 8.840000e-27 132.0
29 TraesCS6B01G408600 chr2A 74.675 308 52 21 173 468 17125387 17125094 3.200000e-21 113.0
30 TraesCS6B01G408600 chr2A 80.645 93 14 3 378 468 737494859 737494949 7.030000e-08 69.4
31 TraesCS6B01G408600 chr1D 84.173 139 20 2 173 309 93095642 93095504 2.460000e-27 134.0
32 TraesCS6B01G408600 chr1D 81.169 154 23 5 257 407 34950685 34950535 6.890000e-23 119.0
33 TraesCS6B01G408600 chr2D 80.102 196 22 12 124 309 369296089 369295901 3.180000e-26 130.0
34 TraesCS6B01G408600 chr2D 86.066 122 13 4 19 136 121545050 121545171 1.140000e-25 128.0
35 TraesCS6B01G408600 chr2D 79.167 192 31 8 262 450 125186528 125186343 1.480000e-24 124.0
36 TraesCS6B01G408600 chr4B 80.702 171 25 6 33 196 82930625 82930794 4.120000e-25 126.0
37 TraesCS6B01G408600 chr4B 79.787 188 22 14 20 194 664330339 664330523 5.320000e-24 122.0
38 TraesCS6B01G408600 chr7A 82.237 152 18 5 150 297 59018967 59018821 5.320000e-24 122.0
39 TraesCS6B01G408600 chr1A 83.459 133 17 4 167 297 318506624 318506753 6.890000e-23 119.0
40 TraesCS6B01G408600 chr4A 89.535 86 7 2 467 550 556164007 556164092 1.490000e-19 108.0
41 TraesCS6B01G408600 chr3B 88.636 88 5 4 467 550 752002054 752001968 6.930000e-18 102.0
42 TraesCS6B01G408600 chr3A 74.747 198 42 7 2519 2715 699424562 699424372 9.030000e-12 82.4
43 TraesCS6B01G408600 chr2B 82.143 84 12 3 382 462 448580024 448579941 7.030000e-08 69.4
44 TraesCS6B01G408600 chr2B 84.127 63 8 2 390 450 41497667 41497729 4.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G408600 chr6B 682659411 682663333 3922 True 7245.00 7245 100.00000 1 3923 1 chr6B.!!$R1 3922
1 TraesCS6B01G408600 chr6B 682741397 682742783 1386 True 880.00 880 78.38200 1195 2571 1 chr6B.!!$R3 1376
2 TraesCS6B01G408600 chr6B 682707044 682707930 886 True 701.00 701 81.28500 2104 2988 1 chr6B.!!$R2 884
3 TraesCS6B01G408600 chr6B 682417765 682419645 1880 False 662.00 662 73.94400 1078 2949 1 chr6B.!!$F2 1871
4 TraesCS6B01G408600 chr6B 683226173 683226697 524 True 309.00 309 78.07200 2467 2971 1 chr6B.!!$R4 504
5 TraesCS6B01G408600 chr6A 595662146 595665010 2864 True 2265.00 4239 91.25750 850 3923 2 chr6A.!!$R1 3073
6 TraesCS6B01G408600 chr6D 450210831 450212574 1743 True 1367.00 1367 81.09300 1173 2900 1 chr6D.!!$R5 1727
7 TraesCS6B01G408600 chr6D 450167446 450169430 1984 True 757.75 1426 91.17175 662 2985 4 chr6D.!!$R7 2323
8 TraesCS6B01G408600 chr6D 449842774 449844687 1913 True 664.00 664 73.77000 1078 2983 1 chr6D.!!$R4 1905
9 TraesCS6B01G408600 chr6D 449816611 449817901 1290 True 492.00 492 74.49500 1698 2984 1 chr6D.!!$R3 1286
10 TraesCS6B01G408600 chr6D 452081040 452081644 604 True 392.00 392 79.00600 2364 2969 1 chr6D.!!$R6 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 850 0.034059 ACCACCAACTGAGAAGCGAG 59.966 55.0 0.00 0.0 0.00 5.03 F
837 853 0.039074 ACCAACTGAGAAGCGAGACG 60.039 55.0 0.00 0.0 0.00 4.18 F
1732 1765 0.243907 TTCGAGCTGTCAGGTGCTAC 59.756 55.0 9.79 0.0 39.91 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2487 2571 3.558931 TTCTCAAAACAGACAGCTGGA 57.441 42.857 19.93 1.59 46.60 3.86 R
2911 3034 9.829507 AATCAAACAGAAGGTCTATTCTATCTG 57.170 33.333 0.00 0.00 37.43 2.90 R
3750 3902 0.394565 AGGCCTCACACTCAGTTCAC 59.605 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.467902 GCTTGAGCAACATTTTTCAAACA 57.532 34.783 0.00 0.00 41.59 2.83
33 34 5.257864 GCTTGAGCAACATTTTTCAAACAC 58.742 37.500 0.00 0.00 41.59 3.32
34 35 5.163874 GCTTGAGCAACATTTTTCAAACACA 60.164 36.000 0.00 0.00 41.59 3.72
35 36 6.620303 GCTTGAGCAACATTTTTCAAACACAA 60.620 34.615 0.00 0.00 41.59 3.33
36 37 6.406093 TGAGCAACATTTTTCAAACACAAG 57.594 33.333 0.00 0.00 0.00 3.16
37 38 6.162079 TGAGCAACATTTTTCAAACACAAGA 58.838 32.000 0.00 0.00 0.00 3.02
38 39 6.817641 TGAGCAACATTTTTCAAACACAAGAT 59.182 30.769 0.00 0.00 0.00 2.40
39 40 7.333921 TGAGCAACATTTTTCAAACACAAGATT 59.666 29.630 0.00 0.00 0.00 2.40
40 41 8.715191 AGCAACATTTTTCAAACACAAGATTA 57.285 26.923 0.00 0.00 0.00 1.75
41 42 9.160496 AGCAACATTTTTCAAACACAAGATTAA 57.840 25.926 0.00 0.00 0.00 1.40
42 43 9.209297 GCAACATTTTTCAAACACAAGATTAAC 57.791 29.630 0.00 0.00 0.00 2.01
87 88 9.959749 AACATTTTTCTATACACATTTCAACGT 57.040 25.926 0.00 0.00 0.00 3.99
88 89 9.959749 ACATTTTTCTATACACATTTCAACGTT 57.040 25.926 0.00 0.00 0.00 3.99
97 98 5.794720 ACACATTTCAACGTTTTCAAATGC 58.205 33.333 24.13 0.00 39.04 3.56
98 99 5.580297 ACACATTTCAACGTTTTCAAATGCT 59.420 32.000 24.13 15.06 39.04 3.79
99 100 6.091986 ACACATTTCAACGTTTTCAAATGCTT 59.908 30.769 24.13 15.04 39.04 3.91
100 101 6.408611 CACATTTCAACGTTTTCAAATGCTTG 59.591 34.615 24.13 17.07 39.04 4.01
101 102 6.312426 ACATTTCAACGTTTTCAAATGCTTGA 59.688 30.769 24.13 5.78 39.04 3.02
102 103 6.900568 TTTCAACGTTTTCAAATGCTTGAT 57.099 29.167 0.00 0.00 41.22 2.57
103 104 6.900568 TTCAACGTTTTCAAATGCTTGATT 57.099 29.167 0.00 0.00 41.22 2.57
104 105 7.993821 TTCAACGTTTTCAAATGCTTGATTA 57.006 28.000 0.00 0.00 41.22 1.75
105 106 8.586570 TTCAACGTTTTCAAATGCTTGATTAT 57.413 26.923 0.00 0.00 41.22 1.28
106 107 8.586570 TCAACGTTTTCAAATGCTTGATTATT 57.413 26.923 0.00 0.00 41.22 1.40
107 108 9.684448 TCAACGTTTTCAAATGCTTGATTATTA 57.316 25.926 0.00 0.00 41.22 0.98
149 150 9.862371 ATTAACATTTTTAACACACTGTCAACA 57.138 25.926 0.00 0.00 0.00 3.33
150 151 9.862371 TTAACATTTTTAACACACTGTCAACAT 57.138 25.926 0.00 0.00 0.00 2.71
151 152 8.770438 AACATTTTTAACACACTGTCAACATT 57.230 26.923 0.00 0.00 0.00 2.71
152 153 8.770438 ACATTTTTAACACACTGTCAACATTT 57.230 26.923 0.00 0.00 0.00 2.32
153 154 9.213799 ACATTTTTAACACACTGTCAACATTTT 57.786 25.926 0.00 0.00 0.00 1.82
176 177 8.484641 TTTTTCTGTGCACATTTAACATTCAA 57.515 26.923 22.00 3.74 0.00 2.69
177 178 8.484641 TTTTCTGTGCACATTTAACATTCAAA 57.515 26.923 22.00 3.08 0.00 2.69
178 179 8.659925 TTTCTGTGCACATTTAACATTCAAAT 57.340 26.923 22.00 0.00 0.00 2.32
179 180 7.640616 TCTGTGCACATTTAACATTCAAATG 57.359 32.000 22.00 2.44 45.01 2.32
180 181 6.145858 TCTGTGCACATTTAACATTCAAATGC 59.854 34.615 22.00 0.00 43.90 3.56
181 182 5.990386 TGTGCACATTTAACATTCAAATGCT 59.010 32.000 17.42 0.00 43.90 3.79
182 183 6.482641 TGTGCACATTTAACATTCAAATGCTT 59.517 30.769 17.42 0.63 43.90 3.91
183 184 6.793203 GTGCACATTTAACATTCAAATGCTTG 59.207 34.615 13.17 2.24 43.90 4.01
184 185 6.482641 TGCACATTTAACATTCAAATGCTTGT 59.517 30.769 7.51 0.00 43.90 3.16
185 186 7.012138 TGCACATTTAACATTCAAATGCTTGTT 59.988 29.630 7.51 0.00 43.90 2.83
186 187 7.856894 GCACATTTAACATTCAAATGCTTGTTT 59.143 29.630 7.51 0.00 43.90 2.83
216 217 6.998968 TTTTTCAAATGCTTGGTTCACATT 57.001 29.167 0.00 0.00 35.59 2.71
217 218 6.998968 TTTTCAAATGCTTGGTTCACATTT 57.001 29.167 0.00 0.00 43.01 2.32
218 219 6.998968 TTTCAAATGCTTGGTTCACATTTT 57.001 29.167 0.00 0.00 40.94 1.82
219 220 6.601741 TTCAAATGCTTGGTTCACATTTTC 57.398 33.333 0.00 0.00 40.94 2.29
220 221 5.916318 TCAAATGCTTGGTTCACATTTTCT 58.084 33.333 0.00 0.00 40.94 2.52
221 222 7.048629 TCAAATGCTTGGTTCACATTTTCTA 57.951 32.000 0.00 0.00 40.94 2.10
222 223 7.495901 TCAAATGCTTGGTTCACATTTTCTAA 58.504 30.769 0.00 0.00 40.94 2.10
223 224 7.984050 TCAAATGCTTGGTTCACATTTTCTAAA 59.016 29.630 0.00 0.00 40.94 1.85
224 225 8.776470 CAAATGCTTGGTTCACATTTTCTAAAT 58.224 29.630 0.00 0.00 40.94 1.40
225 226 9.995003 AAATGCTTGGTTCACATTTTCTAAATA 57.005 25.926 0.00 0.00 40.20 1.40
327 328 9.585099 TTTTCAATATATGGTGAACATCTTTGC 57.415 29.630 0.00 0.00 41.03 3.68
328 329 8.523915 TTCAATATATGGTGAACATCTTTGCT 57.476 30.769 0.00 0.00 41.03 3.91
329 330 9.625747 TTCAATATATGGTGAACATCTTTGCTA 57.374 29.630 0.00 0.00 41.03 3.49
330 331 9.797642 TCAATATATGGTGAACATCTTTGCTAT 57.202 29.630 0.00 0.00 41.03 2.97
337 338 8.978874 TGGTGAACATCTTTGCTATACATATT 57.021 30.769 0.00 0.00 0.00 1.28
338 339 9.407380 TGGTGAACATCTTTGCTATACATATTT 57.593 29.630 0.00 0.00 0.00 1.40
339 340 9.669353 GGTGAACATCTTTGCTATACATATTTG 57.331 33.333 0.00 0.00 0.00 2.32
356 357 8.836268 ACATATTTGAACATTTTCACATGCTT 57.164 26.923 3.95 0.00 41.64 3.91
357 358 8.714179 ACATATTTGAACATTTTCACATGCTTG 58.286 29.630 3.95 0.00 41.64 4.01
358 359 8.927721 CATATTTGAACATTTTCACATGCTTGA 58.072 29.630 6.60 0.00 41.64 3.02
359 360 7.972832 ATTTGAACATTTTCACATGCTTGAT 57.027 28.000 6.60 0.00 41.64 2.57
360 361 7.789273 TTTGAACATTTTCACATGCTTGATT 57.211 28.000 6.60 0.00 41.64 2.57
361 362 8.883954 TTTGAACATTTTCACATGCTTGATTA 57.116 26.923 6.60 0.00 41.64 1.75
362 363 8.883954 TTGAACATTTTCACATGCTTGATTAA 57.116 26.923 6.60 0.00 41.64 1.40
363 364 8.296799 TGAACATTTTCACATGCTTGATTAAC 57.703 30.769 6.60 0.00 36.79 2.01
364 365 7.924947 TGAACATTTTCACATGCTTGATTAACA 59.075 29.630 6.60 0.00 36.79 2.41
365 366 8.836268 AACATTTTCACATGCTTGATTAACAT 57.164 26.923 6.60 0.00 0.00 2.71
366 367 8.836268 ACATTTTCACATGCTTGATTAACATT 57.164 26.923 6.60 0.00 0.00 2.71
367 368 9.275398 ACATTTTCACATGCTTGATTAACATTT 57.725 25.926 6.60 0.00 0.00 2.32
371 372 8.883954 TTCACATGCTTGATTAACATTTTTCA 57.116 26.923 6.60 0.00 0.00 2.69
372 373 8.883954 TCACATGCTTGATTAACATTTTTCAA 57.116 26.923 6.60 0.00 0.00 2.69
373 374 9.322773 TCACATGCTTGATTAACATTTTTCAAA 57.677 25.926 6.60 0.00 0.00 2.69
374 375 9.372541 CACATGCTTGATTAACATTTTTCAAAC 57.627 29.630 6.60 0.00 0.00 2.93
375 376 9.107177 ACATGCTTGATTAACATTTTTCAAACA 57.893 25.926 6.60 0.00 31.18 2.83
376 377 9.372541 CATGCTTGATTAACATTTTTCAAACAC 57.627 29.630 0.00 0.00 29.86 3.32
377 378 8.484641 TGCTTGATTAACATTTTTCAAACACA 57.515 26.923 0.00 0.00 0.00 3.72
378 379 8.939929 TGCTTGATTAACATTTTTCAAACACAA 58.060 25.926 0.00 0.00 0.00 3.33
379 380 9.424659 GCTTGATTAACATTTTTCAAACACAAG 57.575 29.630 0.00 0.00 33.94 3.16
386 387 8.545229 AACATTTTTCAAACACAAGATTGACA 57.455 26.923 0.00 0.00 36.44 3.58
387 388 8.721019 ACATTTTTCAAACACAAGATTGACAT 57.279 26.923 0.00 0.00 36.44 3.06
388 389 9.165035 ACATTTTTCAAACACAAGATTGACATT 57.835 25.926 0.00 0.00 36.44 2.71
389 390 9.991388 CATTTTTCAAACACAAGATTGACATTT 57.009 25.926 0.00 0.00 36.44 2.32
441 442 6.557291 TCCCATTGAACATTTTTCAAATGC 57.443 33.333 8.77 0.00 41.16 3.56
442 443 6.297582 TCCCATTGAACATTTTTCAAATGCT 58.702 32.000 8.77 0.00 41.16 3.79
443 444 6.771749 TCCCATTGAACATTTTTCAAATGCTT 59.228 30.769 8.77 3.81 41.16 3.91
444 445 6.858993 CCCATTGAACATTTTTCAAATGCTTG 59.141 34.615 8.77 0.00 41.16 4.01
445 446 7.255173 CCCATTGAACATTTTTCAAATGCTTGA 60.255 33.333 8.77 0.00 41.16 3.02
446 447 8.293867 CCATTGAACATTTTTCAAATGCTTGAT 58.706 29.630 8.77 0.00 41.22 2.57
447 448 9.672086 CATTGAACATTTTTCAAATGCTTGATT 57.328 25.926 8.77 0.00 41.22 2.57
473 474 6.582437 AAAATTTCAAACGCTTGTACAAGG 57.418 33.333 31.42 23.89 38.80 3.61
474 475 5.508200 AATTTCAAACGCTTGTACAAGGA 57.492 34.783 31.42 19.25 38.80 3.36
475 476 4.966965 TTTCAAACGCTTGTACAAGGAA 57.033 36.364 31.42 23.03 38.80 3.36
476 477 5.508200 TTTCAAACGCTTGTACAAGGAAT 57.492 34.783 31.42 15.59 38.80 3.01
477 478 4.742438 TCAAACGCTTGTACAAGGAATC 57.258 40.909 31.42 16.81 38.80 2.52
478 479 3.500680 TCAAACGCTTGTACAAGGAATCC 59.499 43.478 31.42 16.49 38.80 3.01
479 480 3.418684 AACGCTTGTACAAGGAATCCT 57.581 42.857 31.42 0.00 38.80 3.24
480 481 3.418684 ACGCTTGTACAAGGAATCCTT 57.581 42.857 31.42 9.08 45.88 3.36
481 482 4.546829 ACGCTTGTACAAGGAATCCTTA 57.453 40.909 31.42 0.00 42.67 2.69
482 483 4.901868 ACGCTTGTACAAGGAATCCTTAA 58.098 39.130 31.42 4.54 42.67 1.85
483 484 5.310451 ACGCTTGTACAAGGAATCCTTAAA 58.690 37.500 31.42 2.73 42.67 1.52
484 485 5.766174 ACGCTTGTACAAGGAATCCTTAAAA 59.234 36.000 31.42 0.70 42.67 1.52
485 486 6.263617 ACGCTTGTACAAGGAATCCTTAAAAA 59.736 34.615 31.42 6.61 42.67 1.94
520 521 7.721286 ATTCAGTCCTATGAATCAAACGATC 57.279 36.000 0.00 0.00 44.68 3.69
521 522 6.220726 TCAGTCCTATGAATCAAACGATCA 57.779 37.500 0.00 0.00 0.00 2.92
522 523 6.639563 TCAGTCCTATGAATCAAACGATCAA 58.360 36.000 0.00 0.00 0.00 2.57
523 524 6.535150 TCAGTCCTATGAATCAAACGATCAAC 59.465 38.462 0.00 0.00 0.00 3.18
524 525 6.313658 CAGTCCTATGAATCAAACGATCAACA 59.686 38.462 0.00 0.00 0.00 3.33
525 526 7.011763 CAGTCCTATGAATCAAACGATCAACAT 59.988 37.037 0.00 0.00 0.00 2.71
526 527 8.204160 AGTCCTATGAATCAAACGATCAACATA 58.796 33.333 0.00 0.00 0.00 2.29
527 528 8.491152 GTCCTATGAATCAAACGATCAACATAG 58.509 37.037 0.00 0.00 34.94 2.23
528 529 8.421002 TCCTATGAATCAAACGATCAACATAGA 58.579 33.333 0.00 0.00 35.83 1.98
529 530 9.045223 CCTATGAATCAAACGATCAACATAGAA 57.955 33.333 0.00 0.00 35.83 2.10
554 555 8.494016 AAAAATCACTAAGGATTCTAAGTCCG 57.506 34.615 0.00 0.00 40.76 4.79
555 556 5.793030 ATCACTAAGGATTCTAAGTCCGG 57.207 43.478 0.00 0.00 40.76 5.14
556 557 4.863548 TCACTAAGGATTCTAAGTCCGGA 58.136 43.478 0.00 0.00 40.76 5.14
557 558 4.643784 TCACTAAGGATTCTAAGTCCGGAC 59.356 45.833 27.67 27.67 40.76 4.79
558 559 4.401519 CACTAAGGATTCTAAGTCCGGACA 59.598 45.833 35.00 15.76 40.76 4.02
559 560 5.069251 CACTAAGGATTCTAAGTCCGGACAT 59.931 44.000 35.00 26.66 40.76 3.06
560 561 5.661759 ACTAAGGATTCTAAGTCCGGACATT 59.338 40.000 35.00 25.77 40.76 2.71
561 562 4.408182 AGGATTCTAAGTCCGGACATTG 57.592 45.455 35.00 24.26 40.76 2.82
562 563 3.134804 AGGATTCTAAGTCCGGACATTGG 59.865 47.826 35.00 24.99 40.76 3.16
563 564 3.134081 GGATTCTAAGTCCGGACATTGGA 59.866 47.826 35.00 26.56 0.00 3.53
564 565 3.887621 TTCTAAGTCCGGACATTGGAG 57.112 47.619 35.00 22.20 35.82 3.86
565 566 1.480954 TCTAAGTCCGGACATTGGAGC 59.519 52.381 35.00 6.86 35.82 4.70
566 567 1.207089 CTAAGTCCGGACATTGGAGCA 59.793 52.381 35.00 7.45 35.82 4.26
567 568 0.400213 AAGTCCGGACATTGGAGCAA 59.600 50.000 35.00 0.00 35.82 3.91
568 569 0.036010 AGTCCGGACATTGGAGCAAG 60.036 55.000 35.00 0.00 35.82 4.01
569 570 0.036388 GTCCGGACATTGGAGCAAGA 60.036 55.000 29.75 0.00 35.82 3.02
570 571 0.250234 TCCGGACATTGGAGCAAGAG 59.750 55.000 0.00 0.00 0.00 2.85
571 572 0.250234 CCGGACATTGGAGCAAGAGA 59.750 55.000 0.00 0.00 0.00 3.10
572 573 1.339055 CCGGACATTGGAGCAAGAGAA 60.339 52.381 0.00 0.00 0.00 2.87
573 574 2.426522 CGGACATTGGAGCAAGAGAAA 58.573 47.619 0.00 0.00 0.00 2.52
574 575 2.813754 CGGACATTGGAGCAAGAGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
575 576 3.253188 CGGACATTGGAGCAAGAGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
576 577 4.614535 CGGACATTGGAGCAAGAGAAAAAG 60.615 45.833 0.00 0.00 0.00 2.27
577 578 4.520492 GGACATTGGAGCAAGAGAAAAAGA 59.480 41.667 0.00 0.00 0.00 2.52
578 579 5.335504 GGACATTGGAGCAAGAGAAAAAGAG 60.336 44.000 0.00 0.00 0.00 2.85
579 580 4.522022 ACATTGGAGCAAGAGAAAAAGAGG 59.478 41.667 0.00 0.00 0.00 3.69
580 581 2.508526 TGGAGCAAGAGAAAAAGAGGC 58.491 47.619 0.00 0.00 0.00 4.70
581 582 2.107204 TGGAGCAAGAGAAAAAGAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
582 583 3.153130 GGAGCAAGAGAAAAAGAGGCTT 58.847 45.455 0.00 0.00 0.00 4.35
583 584 3.190327 GGAGCAAGAGAAAAAGAGGCTTC 59.810 47.826 0.00 0.00 0.00 3.86
584 585 2.810852 AGCAAGAGAAAAAGAGGCTTCG 59.189 45.455 0.00 0.00 0.00 3.79
585 586 2.095516 GCAAGAGAAAAAGAGGCTTCGG 60.096 50.000 0.00 0.00 0.00 4.30
586 587 2.481289 AGAGAAAAAGAGGCTTCGGG 57.519 50.000 0.00 0.00 0.00 5.14
587 588 1.978580 AGAGAAAAAGAGGCTTCGGGA 59.021 47.619 0.00 0.00 0.00 5.14
588 589 2.027653 AGAGAAAAAGAGGCTTCGGGAG 60.028 50.000 0.00 0.00 0.00 4.30
589 590 1.978580 AGAAAAAGAGGCTTCGGGAGA 59.021 47.619 0.00 0.00 0.00 3.71
590 591 2.027653 AGAAAAAGAGGCTTCGGGAGAG 60.028 50.000 0.00 0.00 41.75 3.20
591 592 1.645710 AAAAGAGGCTTCGGGAGAGA 58.354 50.000 0.00 0.00 41.75 3.10
592 593 1.645710 AAAGAGGCTTCGGGAGAGAA 58.354 50.000 0.00 0.00 41.75 2.87
593 594 1.645710 AAGAGGCTTCGGGAGAGAAA 58.354 50.000 0.00 0.00 41.75 2.52
594 595 1.190643 AGAGGCTTCGGGAGAGAAAG 58.809 55.000 0.00 0.00 41.75 2.62
595 596 1.187087 GAGGCTTCGGGAGAGAAAGA 58.813 55.000 0.00 0.00 41.75 2.52
596 597 1.550976 GAGGCTTCGGGAGAGAAAGAA 59.449 52.381 0.00 0.00 41.75 2.52
597 598 1.978580 AGGCTTCGGGAGAGAAAGAAA 59.021 47.619 0.00 0.00 41.75 2.52
598 599 2.372172 AGGCTTCGGGAGAGAAAGAAAA 59.628 45.455 0.00 0.00 41.75 2.29
599 600 3.146847 GGCTTCGGGAGAGAAAGAAAAA 58.853 45.455 0.00 0.00 41.75 1.94
620 621 7.671495 AAAAAGAAAGCAAGCAAGAGAAAAA 57.329 28.000 0.00 0.00 0.00 1.94
621 622 6.898912 AAAGAAAGCAAGCAAGAGAAAAAG 57.101 33.333 0.00 0.00 0.00 2.27
622 623 5.841957 AGAAAGCAAGCAAGAGAAAAAGA 57.158 34.783 0.00 0.00 0.00 2.52
623 624 5.829829 AGAAAGCAAGCAAGAGAAAAAGAG 58.170 37.500 0.00 0.00 0.00 2.85
624 625 4.581077 AAGCAAGCAAGAGAAAAAGAGG 57.419 40.909 0.00 0.00 0.00 3.69
625 626 2.295629 AGCAAGCAAGAGAAAAAGAGGC 59.704 45.455 0.00 0.00 0.00 4.70
626 627 2.295629 GCAAGCAAGAGAAAAAGAGGCT 59.704 45.455 0.00 0.00 0.00 4.58
627 628 3.243670 GCAAGCAAGAGAAAAAGAGGCTT 60.244 43.478 0.00 0.00 40.41 4.35
628 629 4.544651 CAAGCAAGAGAAAAAGAGGCTTC 58.455 43.478 0.00 0.00 37.97 3.86
629 630 2.810852 AGCAAGAGAAAAAGAGGCTTCG 59.189 45.455 0.00 0.00 0.00 3.79
630 631 2.095516 GCAAGAGAAAAAGAGGCTTCGG 60.096 50.000 0.00 0.00 0.00 4.30
631 632 2.481289 AGAGAAAAAGAGGCTTCGGG 57.519 50.000 0.00 0.00 0.00 5.14
632 633 1.978580 AGAGAAAAAGAGGCTTCGGGA 59.021 47.619 0.00 0.00 0.00 5.14
633 634 2.027653 AGAGAAAAAGAGGCTTCGGGAG 60.028 50.000 0.00 0.00 0.00 4.30
634 635 1.978580 AGAAAAAGAGGCTTCGGGAGA 59.021 47.619 0.00 0.00 0.00 3.71
635 636 2.027653 AGAAAAAGAGGCTTCGGGAGAG 60.028 50.000 0.00 0.00 41.75 3.20
636 637 1.645710 AAAAGAGGCTTCGGGAGAGA 58.354 50.000 0.00 0.00 41.75 3.10
637 638 0.899019 AAAGAGGCTTCGGGAGAGAC 59.101 55.000 0.00 0.00 41.75 3.36
638 639 1.316706 AAGAGGCTTCGGGAGAGACG 61.317 60.000 0.00 0.00 41.75 4.18
639 640 1.749638 GAGGCTTCGGGAGAGACGA 60.750 63.158 0.00 0.00 41.75 4.20
640 641 1.304217 AGGCTTCGGGAGAGACGAA 60.304 57.895 0.00 0.00 46.73 3.85
641 642 1.153804 GGCTTCGGGAGAGACGAAC 60.154 63.158 0.00 0.00 44.41 3.95
642 643 1.585006 GCTTCGGGAGAGACGAACA 59.415 57.895 0.00 0.00 44.41 3.18
643 644 0.038526 GCTTCGGGAGAGACGAACAA 60.039 55.000 0.00 0.00 44.41 2.83
644 645 1.604693 GCTTCGGGAGAGACGAACAAA 60.605 52.381 0.00 0.00 44.41 2.83
645 646 2.931320 GCTTCGGGAGAGACGAACAAAT 60.931 50.000 0.00 0.00 44.41 2.32
646 647 2.363788 TCGGGAGAGACGAACAAATG 57.636 50.000 0.00 0.00 37.42 2.32
647 648 0.721718 CGGGAGAGACGAACAAATGC 59.278 55.000 0.00 0.00 0.00 3.56
648 649 1.087501 GGGAGAGACGAACAAATGCC 58.912 55.000 0.00 0.00 0.00 4.40
649 650 1.610624 GGGAGAGACGAACAAATGCCA 60.611 52.381 0.00 0.00 0.00 4.92
650 651 1.464997 GGAGAGACGAACAAATGCCAC 59.535 52.381 0.00 0.00 0.00 5.01
651 652 1.126846 GAGAGACGAACAAATGCCACG 59.873 52.381 0.00 0.00 0.00 4.94
652 653 0.452784 GAGACGAACAAATGCCACGC 60.453 55.000 0.00 0.00 0.00 5.34
653 654 1.442017 GACGAACAAATGCCACGCC 60.442 57.895 0.00 0.00 0.00 5.68
654 655 1.852067 GACGAACAAATGCCACGCCT 61.852 55.000 0.00 0.00 0.00 5.52
655 656 1.154225 CGAACAAATGCCACGCCTC 60.154 57.895 0.00 0.00 0.00 4.70
656 657 1.851021 CGAACAAATGCCACGCCTCA 61.851 55.000 0.00 0.00 0.00 3.86
657 658 0.387239 GAACAAATGCCACGCCTCAC 60.387 55.000 0.00 0.00 0.00 3.51
697 698 3.595758 CGCATCGCCCCAAATCCC 61.596 66.667 0.00 0.00 0.00 3.85
698 699 3.595758 GCATCGCCCCAAATCCCG 61.596 66.667 0.00 0.00 0.00 5.14
699 700 2.124320 CATCGCCCCAAATCCCGT 60.124 61.111 0.00 0.00 0.00 5.28
700 701 1.752694 CATCGCCCCAAATCCCGTT 60.753 57.895 0.00 0.00 0.00 4.44
701 702 1.752694 ATCGCCCCAAATCCCGTTG 60.753 57.895 0.00 0.00 0.00 4.10
702 703 3.448340 CGCCCCAAATCCCGTTGG 61.448 66.667 0.00 0.00 46.57 3.77
709 710 0.168128 CAAATCCCGTTGGAACTCGC 59.832 55.000 0.00 0.00 45.98 5.03
710 711 0.958876 AAATCCCGTTGGAACTCGCC 60.959 55.000 0.00 0.00 45.98 5.54
711 712 3.659089 ATCCCGTTGGAACTCGCCG 62.659 63.158 0.00 0.00 45.98 6.46
714 715 3.118454 CGTTGGAACTCGCCGCAT 61.118 61.111 0.00 0.00 0.00 4.73
715 716 2.785258 GTTGGAACTCGCCGCATC 59.215 61.111 0.00 0.00 0.00 3.91
716 717 2.813474 TTGGAACTCGCCGCATCG 60.813 61.111 0.00 0.00 0.00 3.84
746 747 2.813474 TTGGAACTCGCCGCATCG 60.813 61.111 0.00 0.00 0.00 3.84
789 805 0.674895 GTGCTGAACTCTTCCGCCAT 60.675 55.000 0.00 0.00 38.88 4.40
792 808 1.677217 GCTGAACTCTTCCGCCATTCT 60.677 52.381 0.00 0.00 34.33 2.40
797 813 1.205893 ACTCTTCCGCCATTCTCTGTC 59.794 52.381 0.00 0.00 0.00 3.51
811 827 2.647299 TCTCTGTCTGTCTTCCTCTCCT 59.353 50.000 0.00 0.00 0.00 3.69
818 834 1.431633 TGTCTTCCTCTCCTACCACCA 59.568 52.381 0.00 0.00 0.00 4.17
819 835 1.826096 GTCTTCCTCTCCTACCACCAC 59.174 57.143 0.00 0.00 0.00 4.16
820 836 1.196012 CTTCCTCTCCTACCACCACC 58.804 60.000 0.00 0.00 0.00 4.61
821 837 0.490017 TTCCTCTCCTACCACCACCA 59.510 55.000 0.00 0.00 0.00 4.17
822 838 0.490017 TCCTCTCCTACCACCACCAA 59.510 55.000 0.00 0.00 0.00 3.67
823 839 0.613777 CCTCTCCTACCACCACCAAC 59.386 60.000 0.00 0.00 0.00 3.77
824 840 1.645710 CTCTCCTACCACCACCAACT 58.354 55.000 0.00 0.00 0.00 3.16
825 841 1.276421 CTCTCCTACCACCACCAACTG 59.724 57.143 0.00 0.00 0.00 3.16
826 842 1.132977 TCTCCTACCACCACCAACTGA 60.133 52.381 0.00 0.00 0.00 3.41
827 843 1.276421 CTCCTACCACCACCAACTGAG 59.724 57.143 0.00 0.00 0.00 3.35
828 844 1.132977 TCCTACCACCACCAACTGAGA 60.133 52.381 0.00 0.00 0.00 3.27
829 845 1.697432 CCTACCACCACCAACTGAGAA 59.303 52.381 0.00 0.00 0.00 2.87
830 846 2.289694 CCTACCACCACCAACTGAGAAG 60.290 54.545 0.00 0.00 0.00 2.85
831 847 0.179018 ACCACCACCAACTGAGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
832 848 1.230635 CCACCACCAACTGAGAAGCG 61.231 60.000 0.00 0.00 0.00 4.68
833 849 0.249868 CACCACCAACTGAGAAGCGA 60.250 55.000 0.00 0.00 0.00 4.93
834 850 0.034059 ACCACCAACTGAGAAGCGAG 59.966 55.000 0.00 0.00 0.00 5.03
835 851 0.318441 CCACCAACTGAGAAGCGAGA 59.682 55.000 0.00 0.00 0.00 4.04
836 852 1.423395 CACCAACTGAGAAGCGAGAC 58.577 55.000 0.00 0.00 0.00 3.36
837 853 0.039074 ACCAACTGAGAAGCGAGACG 60.039 55.000 0.00 0.00 0.00 4.18
838 854 0.734253 CCAACTGAGAAGCGAGACGG 60.734 60.000 0.00 0.00 0.00 4.79
839 855 1.080434 AACTGAGAAGCGAGACGGC 60.080 57.895 0.00 0.00 0.00 5.68
840 856 2.578178 CTGAGAAGCGAGACGGCG 60.578 66.667 4.80 4.80 38.18 6.46
876 892 1.016653 GGAGCACGCAGGTCTTCTTC 61.017 60.000 7.46 0.00 44.16 2.87
878 894 1.202582 GAGCACGCAGGTCTTCTTCTA 59.797 52.381 0.91 0.00 41.51 2.10
909 925 6.519721 CGGAGGTGATAATCATGGATTCTTCT 60.520 42.308 0.00 0.00 33.95 2.85
910 926 7.230027 GGAGGTGATAATCATGGATTCTTCTT 58.770 38.462 0.00 0.00 33.95 2.52
911 927 7.390162 GGAGGTGATAATCATGGATTCTTCTTC 59.610 40.741 0.00 0.00 33.95 2.87
924 940 7.128751 TGGATTCTTCTTCTCTATCTTCTCCA 58.871 38.462 0.00 0.00 0.00 3.86
1112 1128 2.690497 AGACGAGGTGATGTGGTGATAG 59.310 50.000 0.00 0.00 0.00 2.08
1139 1163 0.253630 TTCCCTGCCTACTCCCCATT 60.254 55.000 0.00 0.00 0.00 3.16
1147 1171 1.474330 CTACTCCCCATTTGGTTGCC 58.526 55.000 0.00 0.00 0.00 4.52
1179 1203 3.244284 TGACGCTATGTACCCAACAACTT 60.244 43.478 0.00 0.00 42.70 2.66
1189 1213 1.538849 CCCAACAACTTGGCAGCTTTC 60.539 52.381 0.00 0.00 45.32 2.62
1204 1228 1.856265 CTTTCGTGGAGGCAACCTGC 61.856 60.000 0.00 0.00 42.53 4.85
1211 1235 1.739562 GAGGCAACCTGCTCGACAG 60.740 63.158 7.72 7.72 44.28 3.51
1230 1254 2.681848 CAGAATGTCCAAGAGGCATCAC 59.318 50.000 0.00 0.00 32.73 3.06
1309 1333 1.542492 GGACGAACTCCTCCAGTACA 58.458 55.000 0.00 0.00 35.89 2.90
1317 1341 3.713003 ACTCCTCCAGTACATGATGTCA 58.287 45.455 0.00 0.00 31.37 3.58
1393 1417 2.203788 TCTGGAAGTCCGTGCCCT 60.204 61.111 0.00 0.00 39.43 5.19
1492 1516 1.066430 GTGACCCAACGCCTCTGAATA 60.066 52.381 0.00 0.00 0.00 1.75
1493 1517 1.066430 TGACCCAACGCCTCTGAATAC 60.066 52.381 0.00 0.00 0.00 1.89
1732 1765 0.243907 TTCGAGCTGTCAGGTGCTAC 59.756 55.000 9.79 0.00 39.91 3.58
1830 1863 3.697045 ACACGAGTTTTGGTTTTGATCCA 59.303 39.130 0.00 0.00 0.00 3.41
2071 2110 5.140177 GTGCTACGAATTTGAAGTTGACAG 58.860 41.667 0.00 0.00 0.00 3.51
2289 2343 4.267928 CACACCGCTACTTGATACTTTAGC 59.732 45.833 0.00 0.00 34.75 3.09
2328 2404 8.677300 TCAAACATGTAGGATTGAGATTAAAGC 58.323 33.333 0.00 0.00 0.00 3.51
2427 2503 8.877808 TCAAAGCATGTACTTATGTATCTCAG 57.122 34.615 0.00 0.00 0.00 3.35
2639 2723 7.285629 CACCCATTCTAGAGACACTGATACTAA 59.714 40.741 0.00 0.00 0.00 2.24
2911 3034 4.579869 TGGAGTACCTTCTGAGCAAATTC 58.420 43.478 0.00 0.00 37.04 2.17
3071 3202 2.723124 CCATACTTGGCAACCACAAC 57.277 50.000 0.00 0.00 35.85 3.32
3087 3218 2.357637 CACAACGTTGCCCCTTATATGG 59.642 50.000 27.61 0.00 0.00 2.74
3093 3224 1.000896 GCCCCTTATATGGCGCCAT 60.001 57.895 41.28 41.28 38.00 4.40
3134 3265 3.111484 TCATGACCATAGGTGCTTGGTA 58.889 45.455 0.00 0.00 46.14 3.25
3135 3266 3.521531 TCATGACCATAGGTGCTTGGTAA 59.478 43.478 0.00 0.00 46.14 2.85
3136 3267 3.343941 TGACCATAGGTGCTTGGTAAC 57.656 47.619 0.00 0.00 46.14 2.50
3137 3268 2.910319 TGACCATAGGTGCTTGGTAACT 59.090 45.455 0.00 0.00 46.14 2.24
3138 3269 4.098155 TGACCATAGGTGCTTGGTAACTA 58.902 43.478 0.00 0.00 46.14 2.24
3139 3270 4.081309 TGACCATAGGTGCTTGGTAACTAC 60.081 45.833 0.00 0.00 46.14 2.73
3140 3271 3.841845 ACCATAGGTGCTTGGTAACTACA 59.158 43.478 0.00 0.00 44.36 2.74
3141 3272 4.081087 ACCATAGGTGCTTGGTAACTACAG 60.081 45.833 0.00 0.00 44.36 2.74
3142 3273 4.442706 CATAGGTGCTTGGTAACTACAGG 58.557 47.826 0.00 0.00 37.61 4.00
3143 3274 1.003233 AGGTGCTTGGTAACTACAGGC 59.997 52.381 0.00 0.00 40.84 4.85
3144 3275 1.271163 GGTGCTTGGTAACTACAGGCA 60.271 52.381 0.00 0.00 46.65 4.75
3145 3276 2.472695 TGCTTGGTAACTACAGGCAG 57.527 50.000 0.00 0.00 44.46 4.85
3146 3277 1.697432 TGCTTGGTAACTACAGGCAGT 59.303 47.619 0.00 0.00 44.46 4.40
3303 3434 8.699283 AAGGTAGAAAATCGTAAGTGTACATC 57.301 34.615 0.00 0.00 39.48 3.06
3364 3495 1.860676 TGGTTGTCTCGTGTAAGTGC 58.139 50.000 0.00 0.00 0.00 4.40
3377 3508 4.023536 CGTGTAAGTGCTACCCAAAAATGT 60.024 41.667 0.00 0.00 0.00 2.71
3385 3516 3.368013 GCTACCCAAAAATGTTGCCTACC 60.368 47.826 0.00 0.00 0.00 3.18
3389 3520 4.103943 ACCCAAAAATGTTGCCTACCAAAT 59.896 37.500 0.00 0.00 34.68 2.32
3410 3541 8.739972 CCAAATATAAGTTAAAACCTGTGCTCT 58.260 33.333 0.00 0.00 0.00 4.09
3411 3542 9.774742 CAAATATAAGTTAAAACCTGTGCTCTC 57.225 33.333 0.00 0.00 0.00 3.20
3412 3543 8.507524 AATATAAGTTAAAACCTGTGCTCTCC 57.492 34.615 0.00 0.00 0.00 3.71
3415 3546 4.137543 AGTTAAAACCTGTGCTCTCCTTG 58.862 43.478 0.00 0.00 0.00 3.61
3416 3547 2.736670 AAAACCTGTGCTCTCCTTGT 57.263 45.000 0.00 0.00 0.00 3.16
3428 3579 4.651045 TGCTCTCCTTGTAGCATTCTGATA 59.349 41.667 0.00 0.00 43.56 2.15
3448 3599 6.341316 TGATAGCTAGATCAACCAACTGAAC 58.659 40.000 0.00 0.00 32.84 3.18
3453 3604 6.211584 AGCTAGATCAACCAACTGAACTTCTA 59.788 38.462 0.00 0.00 31.58 2.10
3454 3605 7.044798 GCTAGATCAACCAACTGAACTTCTAT 58.955 38.462 0.00 0.00 31.58 1.98
3459 3611 9.383519 GATCAACCAACTGAACTTCTATCAATA 57.616 33.333 0.00 0.00 0.00 1.90
3460 3612 9.911788 ATCAACCAACTGAACTTCTATCAATAT 57.088 29.630 0.00 0.00 0.00 1.28
3472 3624 6.939163 ACTTCTATCAATATTCCCTGCATGTC 59.061 38.462 0.00 0.00 0.00 3.06
3477 3629 3.515602 ATATTCCCTGCATGTCTTCCC 57.484 47.619 0.00 0.00 0.00 3.97
3478 3630 1.002069 ATTCCCTGCATGTCTTCCCA 58.998 50.000 0.00 0.00 0.00 4.37
3479 3631 0.776810 TTCCCTGCATGTCTTCCCAA 59.223 50.000 0.00 0.00 0.00 4.12
3486 3638 2.306805 TGCATGTCTTCCCAATCTGAGT 59.693 45.455 0.00 0.00 0.00 3.41
3501 3653 3.808116 CTGAGTGTTTCATGTGCTCAG 57.192 47.619 14.72 14.72 44.42 3.35
3509 3661 1.051008 TCATGTGCTCAGTGTGTCCT 58.949 50.000 0.00 0.00 0.00 3.85
3520 3672 3.876914 TCAGTGTGTCCTTTGCTGTTTAG 59.123 43.478 0.00 0.00 0.00 1.85
3543 3695 3.627237 GCAGGGTTCCATTTCTATTGGGA 60.627 47.826 0.00 0.00 34.85 4.37
3553 3705 2.396590 TCTATTGGGAGGCGTTGTTC 57.603 50.000 0.00 0.00 0.00 3.18
3574 3726 1.324005 GCTGGTCTACTTCGCCCTCT 61.324 60.000 0.00 0.00 0.00 3.69
3585 3737 1.446272 CGCCCTCTGTTCTTCGGTC 60.446 63.158 0.00 0.00 0.00 4.79
3600 3752 2.666317 TCGGTCTTCATGGATCTAGCA 58.334 47.619 0.00 0.00 0.00 3.49
3639 3791 5.557891 TTTCGTCTACTAGCTAAGTGTCC 57.442 43.478 0.00 0.00 39.39 4.02
3645 3797 3.802948 ACTAGCTAAGTGTCCCATTCG 57.197 47.619 0.00 0.00 36.93 3.34
3674 3826 4.024556 ACTCGCTCATATGTAATTTGCTGC 60.025 41.667 1.90 0.00 0.00 5.25
3682 3834 7.186128 TCATATGTAATTTGCTGCGTACTTTG 58.814 34.615 1.90 0.00 0.00 2.77
3690 3842 1.136690 CTGCGTACTTTGTTGCTCGA 58.863 50.000 0.00 0.00 0.00 4.04
3691 3843 1.525197 CTGCGTACTTTGTTGCTCGAA 59.475 47.619 0.00 0.00 0.00 3.71
3707 3859 3.372206 GCTCGAATGCAGTAAGAACATGT 59.628 43.478 0.00 0.00 0.00 3.21
3721 3873 1.674359 ACATGTTTGAAGTGTCGCCA 58.326 45.000 0.00 0.00 0.00 5.69
3738 3890 2.418746 CGCCATAGTCCTAGTGCACTTT 60.419 50.000 27.06 3.84 0.00 2.66
3739 3891 3.610911 GCCATAGTCCTAGTGCACTTTT 58.389 45.455 27.06 2.95 0.00 2.27
3756 3908 5.111293 CACTTTTTGCTCATTTGGTGAACT 58.889 37.500 0.00 0.00 36.14 3.01
3760 3912 3.213206 TGCTCATTTGGTGAACTGAGT 57.787 42.857 0.00 0.00 37.90 3.41
3780 3932 2.749621 GTGTGAGGCCTGAACCTATTTG 59.250 50.000 12.00 0.00 41.32 2.32
3800 3952 0.676151 CCTGCTGAAGGCCTCTGTTC 60.676 60.000 5.23 0.00 39.93 3.18
3816 3968 5.997746 CCTCTGTTCTGGTAAGATGTTTCAA 59.002 40.000 0.00 0.00 30.72 2.69
3829 3981 4.841246 AGATGTTTCAAGGACCTGTCTAGT 59.159 41.667 0.00 0.00 0.00 2.57
3845 3997 4.515191 TGTCTAGTGTTGTTTCAGGATTGC 59.485 41.667 0.00 0.00 0.00 3.56
3847 3999 1.608590 AGTGTTGTTTCAGGATTGCGG 59.391 47.619 0.00 0.00 0.00 5.69
3902 4054 3.823281 TTCTGAACTTACCGTGTTGGA 57.177 42.857 0.00 0.00 42.00 3.53
3907 4059 2.094762 ACTTACCGTGTTGGATCAGC 57.905 50.000 0.00 0.00 42.00 4.26
3913 4065 0.586319 CGTGTTGGATCAGCGTGTTT 59.414 50.000 0.00 0.00 0.00 2.83
3914 4066 1.795872 CGTGTTGGATCAGCGTGTTTA 59.204 47.619 0.00 0.00 0.00 2.01
3919 4071 2.642427 TGGATCAGCGTGTTTATGCAT 58.358 42.857 3.79 3.79 41.38 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.163874 TGTGTTTGAAAAATGTTGCTCAAGC 60.164 36.000 0.00 0.00 42.50 4.01
11 12 6.406093 TGTGTTTGAAAAATGTTGCTCAAG 57.594 33.333 0.00 0.00 0.00 3.02
12 13 6.648310 TCTTGTGTTTGAAAAATGTTGCTCAA 59.352 30.769 0.00 0.00 0.00 3.02
13 14 6.162079 TCTTGTGTTTGAAAAATGTTGCTCA 58.838 32.000 0.00 0.00 0.00 4.26
14 15 6.645700 TCTTGTGTTTGAAAAATGTTGCTC 57.354 33.333 0.00 0.00 0.00 4.26
15 16 7.614124 AATCTTGTGTTTGAAAAATGTTGCT 57.386 28.000 0.00 0.00 0.00 3.91
16 17 9.209297 GTTAATCTTGTGTTTGAAAAATGTTGC 57.791 29.630 0.00 0.00 0.00 4.17
61 62 9.959749 ACGTTGAAATGTGTATAGAAAAATGTT 57.040 25.926 0.00 0.00 0.00 2.71
62 63 9.959749 AACGTTGAAATGTGTATAGAAAAATGT 57.040 25.926 0.00 0.00 0.00 2.71
71 72 8.695284 GCATTTGAAAACGTTGAAATGTGTATA 58.305 29.630 25.82 2.54 45.06 1.47
72 73 7.437862 AGCATTTGAAAACGTTGAAATGTGTAT 59.562 29.630 25.82 15.43 45.06 2.29
73 74 6.754209 AGCATTTGAAAACGTTGAAATGTGTA 59.246 30.769 25.82 3.55 45.06 2.90
74 75 5.580297 AGCATTTGAAAACGTTGAAATGTGT 59.420 32.000 25.82 17.72 45.06 3.72
75 76 6.035070 AGCATTTGAAAACGTTGAAATGTG 57.965 33.333 25.82 14.84 45.06 3.21
76 77 6.312426 TCAAGCATTTGAAAACGTTGAAATGT 59.688 30.769 25.82 17.06 45.06 2.71
77 78 6.703857 TCAAGCATTTGAAAACGTTGAAATG 58.296 32.000 23.49 23.49 45.65 2.32
78 79 6.900568 TCAAGCATTTGAAAACGTTGAAAT 57.099 29.167 0.00 4.53 40.26 2.17
79 80 6.900568 ATCAAGCATTTGAAAACGTTGAAA 57.099 29.167 0.00 2.09 45.82 2.69
80 81 6.900568 AATCAAGCATTTGAAAACGTTGAA 57.099 29.167 0.00 0.00 45.82 2.69
81 82 8.586570 AATAATCAAGCATTTGAAAACGTTGA 57.413 26.923 0.00 0.00 45.82 3.18
123 124 9.862371 TGTTGACAGTGTGTTAAAAATGTTAAT 57.138 25.926 0.00 0.00 27.45 1.40
124 125 9.862371 ATGTTGACAGTGTGTTAAAAATGTTAA 57.138 25.926 0.00 0.00 27.45 2.01
125 126 9.862371 AATGTTGACAGTGTGTTAAAAATGTTA 57.138 25.926 0.00 0.00 27.45 2.41
126 127 8.770438 AATGTTGACAGTGTGTTAAAAATGTT 57.230 26.923 0.00 0.00 27.45 2.71
127 128 8.770438 AAATGTTGACAGTGTGTTAAAAATGT 57.230 26.923 0.00 0.00 27.45 2.71
151 152 8.484641 TTGAATGTTAAATGTGCACAGAAAAA 57.515 26.923 25.84 13.88 0.00 1.94
152 153 8.484641 TTTGAATGTTAAATGTGCACAGAAAA 57.515 26.923 25.84 15.08 0.00 2.29
153 154 8.549548 CATTTGAATGTTAAATGTGCACAGAAA 58.450 29.630 25.84 15.43 39.49 2.52
154 155 7.307278 GCATTTGAATGTTAAATGTGCACAGAA 60.307 33.333 25.84 15.64 43.80 3.02
155 156 6.145858 GCATTTGAATGTTAAATGTGCACAGA 59.854 34.615 25.84 10.20 43.80 3.41
156 157 6.146510 AGCATTTGAATGTTAAATGTGCACAG 59.853 34.615 25.84 6.46 43.80 3.66
157 158 5.990386 AGCATTTGAATGTTAAATGTGCACA 59.010 32.000 24.08 24.08 43.80 4.57
158 159 6.470557 AGCATTTGAATGTTAAATGTGCAC 57.529 33.333 10.75 10.75 43.80 4.57
159 160 6.482641 ACAAGCATTTGAATGTTAAATGTGCA 59.517 30.769 10.88 0.00 43.80 4.57
160 161 6.890558 ACAAGCATTTGAATGTTAAATGTGC 58.109 32.000 10.88 0.00 43.80 4.57
193 194 6.998968 AATGTGAACCAAGCATTTGAAAAA 57.001 29.167 0.00 0.00 36.36 1.94
194 195 6.998968 AAATGTGAACCAAGCATTTGAAAA 57.001 29.167 0.00 0.00 40.14 2.29
195 196 6.822676 AGAAAATGTGAACCAAGCATTTGAAA 59.177 30.769 0.00 0.00 40.58 2.69
196 197 6.347696 AGAAAATGTGAACCAAGCATTTGAA 58.652 32.000 0.00 0.00 40.58 2.69
197 198 5.916318 AGAAAATGTGAACCAAGCATTTGA 58.084 33.333 0.00 0.00 40.58 2.69
198 199 7.712264 TTAGAAAATGTGAACCAAGCATTTG 57.288 32.000 0.00 0.00 40.58 2.32
199 200 8.907222 ATTTAGAAAATGTGAACCAAGCATTT 57.093 26.923 0.00 0.00 42.46 2.32
301 302 9.585099 GCAAAGATGTTCACCATATATTGAAAA 57.415 29.630 2.14 0.00 33.58 2.29
302 303 8.970020 AGCAAAGATGTTCACCATATATTGAAA 58.030 29.630 2.14 0.00 33.58 2.69
303 304 8.523915 AGCAAAGATGTTCACCATATATTGAA 57.476 30.769 0.00 0.00 32.56 2.69
304 305 9.797642 ATAGCAAAGATGTTCACCATATATTGA 57.202 29.630 0.00 0.00 32.56 2.57
311 312 9.578576 AATATGTATAGCAAAGATGTTCACCAT 57.421 29.630 0.00 0.00 36.13 3.55
312 313 8.978874 AATATGTATAGCAAAGATGTTCACCA 57.021 30.769 0.00 0.00 0.00 4.17
313 314 9.669353 CAAATATGTATAGCAAAGATGTTCACC 57.331 33.333 0.00 0.00 0.00 4.02
330 331 9.926158 AAGCATGTGAAAATGTTCAAATATGTA 57.074 25.926 0.00 0.00 45.29 2.29
331 332 8.714179 CAAGCATGTGAAAATGTTCAAATATGT 58.286 29.630 0.00 0.00 45.29 2.29
332 333 8.927721 TCAAGCATGTGAAAATGTTCAAATATG 58.072 29.630 0.00 7.07 45.29 1.78
333 334 9.661563 ATCAAGCATGTGAAAATGTTCAAATAT 57.338 25.926 0.00 0.00 45.29 1.28
334 335 9.491675 AATCAAGCATGTGAAAATGTTCAAATA 57.508 25.926 0.00 0.00 45.29 1.40
335 336 7.972832 ATCAAGCATGTGAAAATGTTCAAAT 57.027 28.000 0.00 0.00 45.29 2.32
336 337 7.789273 AATCAAGCATGTGAAAATGTTCAAA 57.211 28.000 0.00 0.00 45.29 2.69
337 338 8.763356 GTTAATCAAGCATGTGAAAATGTTCAA 58.237 29.630 0.00 0.00 45.29 2.69
338 339 7.924947 TGTTAATCAAGCATGTGAAAATGTTCA 59.075 29.630 0.00 0.00 41.57 3.18
339 340 8.296799 TGTTAATCAAGCATGTGAAAATGTTC 57.703 30.769 0.00 0.00 0.00 3.18
340 341 8.836268 ATGTTAATCAAGCATGTGAAAATGTT 57.164 26.923 0.00 0.00 0.00 2.71
341 342 8.836268 AATGTTAATCAAGCATGTGAAAATGT 57.164 26.923 0.00 0.00 0.00 2.71
345 346 9.322773 TGAAAAATGTTAATCAAGCATGTGAAA 57.677 25.926 0.00 0.00 0.00 2.69
346 347 8.883954 TGAAAAATGTTAATCAAGCATGTGAA 57.116 26.923 0.00 0.00 0.00 3.18
347 348 8.883954 TTGAAAAATGTTAATCAAGCATGTGA 57.116 26.923 0.00 0.00 0.00 3.58
348 349 9.372541 GTTTGAAAAATGTTAATCAAGCATGTG 57.627 29.630 0.00 0.00 34.43 3.21
349 350 9.107177 TGTTTGAAAAATGTTAATCAAGCATGT 57.893 25.926 0.00 0.00 37.85 3.21
350 351 9.372541 GTGTTTGAAAAATGTTAATCAAGCATG 57.627 29.630 7.07 0.00 42.29 4.06
351 352 9.107177 TGTGTTTGAAAAATGTTAATCAAGCAT 57.893 25.926 7.07 0.00 42.29 3.79
352 353 8.484641 TGTGTTTGAAAAATGTTAATCAAGCA 57.515 26.923 0.00 0.00 39.58 3.91
353 354 9.424659 CTTGTGTTTGAAAAATGTTAATCAAGC 57.575 29.630 0.00 0.00 33.71 4.01
360 361 9.645059 TGTCAATCTTGTGTTTGAAAAATGTTA 57.355 25.926 0.00 0.00 34.76 2.41
361 362 8.545229 TGTCAATCTTGTGTTTGAAAAATGTT 57.455 26.923 0.00 0.00 34.76 2.71
362 363 8.721019 ATGTCAATCTTGTGTTTGAAAAATGT 57.279 26.923 0.00 0.00 34.76 2.71
363 364 9.991388 AAATGTCAATCTTGTGTTTGAAAAATG 57.009 25.926 0.00 0.00 34.76 2.32
415 416 8.728833 GCATTTGAAAAATGTTCAATGGGAATA 58.271 29.630 12.82 0.00 38.12 1.75
416 417 7.449086 AGCATTTGAAAAATGTTCAATGGGAAT 59.551 29.630 12.82 0.00 38.12 3.01
417 418 6.771749 AGCATTTGAAAAATGTTCAATGGGAA 59.228 30.769 12.82 0.00 38.12 3.97
418 419 6.297582 AGCATTTGAAAAATGTTCAATGGGA 58.702 32.000 12.82 0.00 38.12 4.37
419 420 6.563222 AGCATTTGAAAAATGTTCAATGGG 57.437 33.333 12.82 0.00 38.12 4.00
420 421 7.640852 TCAAGCATTTGAAAAATGTTCAATGG 58.359 30.769 12.82 0.00 40.26 3.16
421 422 9.672086 AATCAAGCATTTGAAAAATGTTCAATG 57.328 25.926 12.82 2.54 45.82 2.82
449 450 6.814146 TCCTTGTACAAGCGTTTGAAATTTTT 59.186 30.769 27.05 0.00 37.73 1.94
450 451 6.334202 TCCTTGTACAAGCGTTTGAAATTTT 58.666 32.000 27.05 0.00 37.73 1.82
451 452 5.897050 TCCTTGTACAAGCGTTTGAAATTT 58.103 33.333 27.05 0.00 37.73 1.82
452 453 5.508200 TCCTTGTACAAGCGTTTGAAATT 57.492 34.783 27.05 0.00 37.73 1.82
453 454 5.508200 TTCCTTGTACAAGCGTTTGAAAT 57.492 34.783 27.05 0.00 37.73 2.17
454 455 4.966965 TTCCTTGTACAAGCGTTTGAAA 57.033 36.364 27.05 10.65 37.73 2.69
455 456 4.023536 GGATTCCTTGTACAAGCGTTTGAA 60.024 41.667 27.05 22.87 37.73 2.69
456 457 3.500680 GGATTCCTTGTACAAGCGTTTGA 59.499 43.478 27.05 16.64 37.73 2.69
457 458 3.502211 AGGATTCCTTGTACAAGCGTTTG 59.498 43.478 27.05 14.74 40.24 2.93
458 459 3.751518 AGGATTCCTTGTACAAGCGTTT 58.248 40.909 27.05 12.85 37.11 3.60
459 460 3.418684 AGGATTCCTTGTACAAGCGTT 57.581 42.857 27.05 14.47 37.11 4.84
460 461 3.418684 AAGGATTCCTTGTACAAGCGT 57.581 42.857 27.05 15.72 42.96 5.07
461 462 5.873179 TTTAAGGATTCCTTGTACAAGCG 57.127 39.130 27.05 20.10 44.44 4.68
496 497 7.275183 TGATCGTTTGATTCATAGGACTGAAT 58.725 34.615 2.32 0.00 46.04 2.57
497 498 6.639563 TGATCGTTTGATTCATAGGACTGAA 58.360 36.000 2.32 0.00 39.35 3.02
498 499 6.220726 TGATCGTTTGATTCATAGGACTGA 57.779 37.500 2.32 0.00 34.09 3.41
499 500 6.313658 TGTTGATCGTTTGATTCATAGGACTG 59.686 38.462 2.32 0.00 34.09 3.51
500 501 6.406370 TGTTGATCGTTTGATTCATAGGACT 58.594 36.000 2.32 0.00 34.09 3.85
501 502 6.662414 TGTTGATCGTTTGATTCATAGGAC 57.338 37.500 2.32 0.00 34.09 3.85
502 503 8.421002 TCTATGTTGATCGTTTGATTCATAGGA 58.579 33.333 16.37 2.70 38.98 2.94
503 504 8.593492 TCTATGTTGATCGTTTGATTCATAGG 57.407 34.615 16.37 0.00 38.98 2.57
529 530 7.553044 CCGGACTTAGAATCCTTAGTGATTTTT 59.447 37.037 0.00 0.00 35.15 1.94
530 531 7.048512 CCGGACTTAGAATCCTTAGTGATTTT 58.951 38.462 0.00 0.00 35.15 1.82
531 532 6.383147 TCCGGACTTAGAATCCTTAGTGATTT 59.617 38.462 0.00 0.00 35.15 2.17
532 533 5.897824 TCCGGACTTAGAATCCTTAGTGATT 59.102 40.000 0.00 0.00 37.66 2.57
533 534 5.302313 GTCCGGACTTAGAATCCTTAGTGAT 59.698 44.000 27.64 0.00 32.94 3.06
534 535 4.643784 GTCCGGACTTAGAATCCTTAGTGA 59.356 45.833 27.64 0.00 32.94 3.41
535 536 4.401519 TGTCCGGACTTAGAATCCTTAGTG 59.598 45.833 33.39 0.00 32.94 2.74
536 537 4.607239 TGTCCGGACTTAGAATCCTTAGT 58.393 43.478 33.39 0.00 35.23 2.24
537 538 5.793030 ATGTCCGGACTTAGAATCCTTAG 57.207 43.478 33.39 0.00 33.70 2.18
538 539 5.163343 CCAATGTCCGGACTTAGAATCCTTA 60.163 44.000 33.39 10.65 33.70 2.69
539 540 4.384208 CCAATGTCCGGACTTAGAATCCTT 60.384 45.833 33.39 8.56 33.70 3.36
540 541 3.134804 CCAATGTCCGGACTTAGAATCCT 59.865 47.826 33.39 9.29 33.70 3.24
541 542 3.134081 TCCAATGTCCGGACTTAGAATCC 59.866 47.826 33.39 6.04 0.00 3.01
542 543 4.372656 CTCCAATGTCCGGACTTAGAATC 58.627 47.826 33.39 6.83 0.00 2.52
543 544 3.432326 GCTCCAATGTCCGGACTTAGAAT 60.432 47.826 33.39 16.74 0.00 2.40
544 545 2.093658 GCTCCAATGTCCGGACTTAGAA 60.094 50.000 33.39 15.07 0.00 2.10
545 546 1.480954 GCTCCAATGTCCGGACTTAGA 59.519 52.381 33.39 23.97 0.00 2.10
546 547 1.207089 TGCTCCAATGTCCGGACTTAG 59.793 52.381 33.39 21.73 0.00 2.18
547 548 1.271856 TGCTCCAATGTCCGGACTTA 58.728 50.000 33.39 16.65 0.00 2.24
548 549 0.400213 TTGCTCCAATGTCCGGACTT 59.600 50.000 33.39 25.40 0.00 3.01
549 550 0.036010 CTTGCTCCAATGTCCGGACT 60.036 55.000 33.39 17.38 0.00 3.85
550 551 0.036388 TCTTGCTCCAATGTCCGGAC 60.036 55.000 28.17 28.17 0.00 4.79
551 552 0.250234 CTCTTGCTCCAATGTCCGGA 59.750 55.000 0.00 0.00 0.00 5.14
552 553 0.250234 TCTCTTGCTCCAATGTCCGG 59.750 55.000 0.00 0.00 0.00 5.14
553 554 2.099141 TTCTCTTGCTCCAATGTCCG 57.901 50.000 0.00 0.00 0.00 4.79
554 555 4.520492 TCTTTTTCTCTTGCTCCAATGTCC 59.480 41.667 0.00 0.00 0.00 4.02
555 556 5.335504 CCTCTTTTTCTCTTGCTCCAATGTC 60.336 44.000 0.00 0.00 0.00 3.06
556 557 4.522022 CCTCTTTTTCTCTTGCTCCAATGT 59.478 41.667 0.00 0.00 0.00 2.71
557 558 4.617762 GCCTCTTTTTCTCTTGCTCCAATG 60.618 45.833 0.00 0.00 0.00 2.82
558 559 3.509184 GCCTCTTTTTCTCTTGCTCCAAT 59.491 43.478 0.00 0.00 0.00 3.16
559 560 2.887152 GCCTCTTTTTCTCTTGCTCCAA 59.113 45.455 0.00 0.00 0.00 3.53
560 561 2.107204 AGCCTCTTTTTCTCTTGCTCCA 59.893 45.455 0.00 0.00 0.00 3.86
561 562 2.789213 AGCCTCTTTTTCTCTTGCTCC 58.211 47.619 0.00 0.00 0.00 4.70
562 563 3.120373 CGAAGCCTCTTTTTCTCTTGCTC 60.120 47.826 0.00 0.00 0.00 4.26
563 564 2.810852 CGAAGCCTCTTTTTCTCTTGCT 59.189 45.455 0.00 0.00 0.00 3.91
564 565 2.095516 CCGAAGCCTCTTTTTCTCTTGC 60.096 50.000 0.00 0.00 0.00 4.01
565 566 2.485814 CCCGAAGCCTCTTTTTCTCTTG 59.514 50.000 0.00 0.00 0.00 3.02
566 567 2.372172 TCCCGAAGCCTCTTTTTCTCTT 59.628 45.455 0.00 0.00 0.00 2.85
567 568 1.978580 TCCCGAAGCCTCTTTTTCTCT 59.021 47.619 0.00 0.00 0.00 3.10
568 569 2.028020 TCTCCCGAAGCCTCTTTTTCTC 60.028 50.000 0.00 0.00 0.00 2.87
569 570 1.978580 TCTCCCGAAGCCTCTTTTTCT 59.021 47.619 0.00 0.00 0.00 2.52
570 571 2.028020 TCTCTCCCGAAGCCTCTTTTTC 60.028 50.000 0.00 0.00 0.00 2.29
571 572 1.978580 TCTCTCCCGAAGCCTCTTTTT 59.021 47.619 0.00 0.00 0.00 1.94
572 573 1.645710 TCTCTCCCGAAGCCTCTTTT 58.354 50.000 0.00 0.00 0.00 2.27
573 574 1.645710 TTCTCTCCCGAAGCCTCTTT 58.354 50.000 0.00 0.00 0.00 2.52
574 575 1.552792 CTTTCTCTCCCGAAGCCTCTT 59.447 52.381 0.00 0.00 0.00 2.85
575 576 1.190643 CTTTCTCTCCCGAAGCCTCT 58.809 55.000 0.00 0.00 0.00 3.69
576 577 1.187087 TCTTTCTCTCCCGAAGCCTC 58.813 55.000 0.00 0.00 0.00 4.70
577 578 1.645710 TTCTTTCTCTCCCGAAGCCT 58.354 50.000 0.00 0.00 0.00 4.58
578 579 2.474410 TTTCTTTCTCTCCCGAAGCC 57.526 50.000 0.00 0.00 0.00 4.35
596 597 7.603784 TCTTTTTCTCTTGCTTGCTTTCTTTTT 59.396 29.630 0.00 0.00 0.00 1.94
597 598 7.099120 TCTTTTTCTCTTGCTTGCTTTCTTTT 58.901 30.769 0.00 0.00 0.00 2.27
598 599 6.633856 TCTTTTTCTCTTGCTTGCTTTCTTT 58.366 32.000 0.00 0.00 0.00 2.52
599 600 6.212888 TCTTTTTCTCTTGCTTGCTTTCTT 57.787 33.333 0.00 0.00 0.00 2.52
600 601 5.221204 CCTCTTTTTCTCTTGCTTGCTTTCT 60.221 40.000 0.00 0.00 0.00 2.52
601 602 4.981054 CCTCTTTTTCTCTTGCTTGCTTTC 59.019 41.667 0.00 0.00 0.00 2.62
602 603 4.738839 GCCTCTTTTTCTCTTGCTTGCTTT 60.739 41.667 0.00 0.00 0.00 3.51
603 604 3.243670 GCCTCTTTTTCTCTTGCTTGCTT 60.244 43.478 0.00 0.00 0.00 3.91
604 605 2.295629 GCCTCTTTTTCTCTTGCTTGCT 59.704 45.455 0.00 0.00 0.00 3.91
605 606 2.295629 AGCCTCTTTTTCTCTTGCTTGC 59.704 45.455 0.00 0.00 0.00 4.01
606 607 4.544651 GAAGCCTCTTTTTCTCTTGCTTG 58.455 43.478 0.00 0.00 37.67 4.01
607 608 3.251972 CGAAGCCTCTTTTTCTCTTGCTT 59.748 43.478 0.00 0.00 40.02 3.91
608 609 2.810852 CGAAGCCTCTTTTTCTCTTGCT 59.189 45.455 0.00 0.00 0.00 3.91
609 610 2.095516 CCGAAGCCTCTTTTTCTCTTGC 60.096 50.000 0.00 0.00 0.00 4.01
610 611 2.485814 CCCGAAGCCTCTTTTTCTCTTG 59.514 50.000 0.00 0.00 0.00 3.02
611 612 2.372172 TCCCGAAGCCTCTTTTTCTCTT 59.628 45.455 0.00 0.00 0.00 2.85
612 613 1.978580 TCCCGAAGCCTCTTTTTCTCT 59.021 47.619 0.00 0.00 0.00 3.10
613 614 2.028020 TCTCCCGAAGCCTCTTTTTCTC 60.028 50.000 0.00 0.00 0.00 2.87
614 615 1.978580 TCTCCCGAAGCCTCTTTTTCT 59.021 47.619 0.00 0.00 0.00 2.52
615 616 2.028020 TCTCTCCCGAAGCCTCTTTTTC 60.028 50.000 0.00 0.00 0.00 2.29
616 617 1.978580 TCTCTCCCGAAGCCTCTTTTT 59.021 47.619 0.00 0.00 0.00 1.94
617 618 1.276705 GTCTCTCCCGAAGCCTCTTTT 59.723 52.381 0.00 0.00 0.00 2.27
618 619 0.899019 GTCTCTCCCGAAGCCTCTTT 59.101 55.000 0.00 0.00 0.00 2.52
619 620 1.316706 CGTCTCTCCCGAAGCCTCTT 61.317 60.000 0.00 0.00 0.00 2.85
620 621 1.751162 CGTCTCTCCCGAAGCCTCT 60.751 63.158 0.00 0.00 0.00 3.69
621 622 1.313812 TTCGTCTCTCCCGAAGCCTC 61.314 60.000 0.00 0.00 39.22 4.70
622 623 1.304217 TTCGTCTCTCCCGAAGCCT 60.304 57.895 0.00 0.00 39.22 4.58
623 624 1.153804 GTTCGTCTCTCCCGAAGCC 60.154 63.158 0.00 0.00 44.14 4.35
624 625 0.038526 TTGTTCGTCTCTCCCGAAGC 60.039 55.000 0.00 0.00 44.14 3.86
625 626 2.433868 TTTGTTCGTCTCTCCCGAAG 57.566 50.000 0.00 0.00 44.14 3.79
626 627 2.683968 CATTTGTTCGTCTCTCCCGAA 58.316 47.619 0.00 0.00 41.60 4.30
627 628 1.671850 GCATTTGTTCGTCTCTCCCGA 60.672 52.381 0.00 0.00 0.00 5.14
628 629 0.721718 GCATTTGTTCGTCTCTCCCG 59.278 55.000 0.00 0.00 0.00 5.14
629 630 1.087501 GGCATTTGTTCGTCTCTCCC 58.912 55.000 0.00 0.00 0.00 4.30
630 631 1.464997 GTGGCATTTGTTCGTCTCTCC 59.535 52.381 0.00 0.00 0.00 3.71
631 632 1.126846 CGTGGCATTTGTTCGTCTCTC 59.873 52.381 0.00 0.00 0.00 3.20
632 633 1.148310 CGTGGCATTTGTTCGTCTCT 58.852 50.000 0.00 0.00 0.00 3.10
633 634 0.452784 GCGTGGCATTTGTTCGTCTC 60.453 55.000 0.00 0.00 0.00 3.36
634 635 1.574428 GCGTGGCATTTGTTCGTCT 59.426 52.632 0.00 0.00 0.00 4.18
635 636 1.442017 GGCGTGGCATTTGTTCGTC 60.442 57.895 0.00 0.00 0.00 4.20
636 637 1.852067 GAGGCGTGGCATTTGTTCGT 61.852 55.000 0.00 0.00 0.00 3.85
637 638 1.154225 GAGGCGTGGCATTTGTTCG 60.154 57.895 0.00 0.00 0.00 3.95
638 639 0.387239 GTGAGGCGTGGCATTTGTTC 60.387 55.000 0.00 0.00 0.00 3.18
639 640 1.659794 GTGAGGCGTGGCATTTGTT 59.340 52.632 0.00 0.00 0.00 2.83
640 641 2.616330 CGTGAGGCGTGGCATTTGT 61.616 57.895 0.00 0.00 35.54 2.83
641 642 2.176546 CGTGAGGCGTGGCATTTG 59.823 61.111 0.00 0.00 35.54 2.32
653 654 2.819595 CCAATGTCCGGCCGTGAG 60.820 66.667 26.12 9.25 0.00 3.51
654 655 3.309436 CTCCAATGTCCGGCCGTGA 62.309 63.158 26.12 18.17 0.00 4.35
655 656 2.819595 CTCCAATGTCCGGCCGTG 60.820 66.667 26.12 15.28 0.00 4.94
656 657 4.778143 GCTCCAATGTCCGGCCGT 62.778 66.667 26.12 1.14 0.00 5.68
657 658 4.473520 AGCTCCAATGTCCGGCCG 62.474 66.667 21.04 21.04 0.00 6.13
658 659 2.514824 GAGCTCCAATGTCCGGCC 60.515 66.667 0.87 0.00 0.00 6.13
659 660 2.892425 CGAGCTCCAATGTCCGGC 60.892 66.667 8.47 0.00 0.00 6.13
660 661 2.892425 GCGAGCTCCAATGTCCGG 60.892 66.667 8.47 0.00 0.00 5.14
690 691 0.168128 GCGAGTTCCAACGGGATTTG 59.832 55.000 0.00 0.00 44.48 2.32
691 692 0.958876 GGCGAGTTCCAACGGGATTT 60.959 55.000 0.00 0.00 44.48 2.17
692 693 1.376812 GGCGAGTTCCAACGGGATT 60.377 57.895 0.00 0.00 44.48 3.01
693 694 2.267961 GGCGAGTTCCAACGGGAT 59.732 61.111 0.00 0.00 44.48 3.85
694 695 4.367023 CGGCGAGTTCCAACGGGA 62.367 66.667 0.00 0.00 43.03 5.14
697 698 3.083600 GATGCGGCGAGTTCCAACG 62.084 63.158 12.98 0.00 0.00 4.10
698 699 2.785258 GATGCGGCGAGTTCCAAC 59.215 61.111 12.98 0.00 0.00 3.77
699 700 2.813474 CGATGCGGCGAGTTCCAA 60.813 61.111 12.98 0.00 0.00 3.53
712 713 3.714487 AACGGGATTGGGGGCGATG 62.714 63.158 0.00 0.00 0.00 3.84
713 714 3.416880 AACGGGATTGGGGGCGAT 61.417 61.111 0.00 0.00 0.00 4.58
714 715 4.418328 CAACGGGATTGGGGGCGA 62.418 66.667 0.00 0.00 34.34 5.54
724 725 4.367023 CGGCGAGTTCCAACGGGA 62.367 66.667 0.00 0.00 43.03 5.14
773 789 2.093764 AGAGAATGGCGGAAGAGTTCAG 60.094 50.000 0.00 0.00 0.00 3.02
775 791 2.275318 CAGAGAATGGCGGAAGAGTTC 58.725 52.381 0.00 0.00 0.00 3.01
777 793 1.205893 GACAGAGAATGGCGGAAGAGT 59.794 52.381 0.00 0.00 0.00 3.24
789 805 3.075283 AGGAGAGGAAGACAGACAGAGAA 59.925 47.826 0.00 0.00 0.00 2.87
792 808 3.308545 GGTAGGAGAGGAAGACAGACAGA 60.309 52.174 0.00 0.00 0.00 3.41
797 813 2.104170 GGTGGTAGGAGAGGAAGACAG 58.896 57.143 0.00 0.00 0.00 3.51
811 827 1.071699 GCTTCTCAGTTGGTGGTGGTA 59.928 52.381 0.00 0.00 0.00 3.25
818 834 0.039074 CGTCTCGCTTCTCAGTTGGT 60.039 55.000 0.00 0.00 0.00 3.67
819 835 0.734253 CCGTCTCGCTTCTCAGTTGG 60.734 60.000 0.00 0.00 0.00 3.77
820 836 1.347817 GCCGTCTCGCTTCTCAGTTG 61.348 60.000 0.00 0.00 0.00 3.16
821 837 1.080434 GCCGTCTCGCTTCTCAGTT 60.080 57.895 0.00 0.00 0.00 3.16
822 838 2.569134 GCCGTCTCGCTTCTCAGT 59.431 61.111 0.00 0.00 0.00 3.41
823 839 2.578178 CGCCGTCTCGCTTCTCAG 60.578 66.667 0.00 0.00 0.00 3.35
837 853 2.202756 CTCCTAAGACGGTGCGCC 60.203 66.667 6.11 6.11 0.00 6.53
838 854 2.202756 CCTCCTAAGACGGTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
839 855 1.433879 CTCCTCCTAAGACGGTGCG 59.566 63.158 0.00 0.00 0.00 5.34
840 856 0.683504 TCCTCCTCCTAAGACGGTGC 60.684 60.000 0.00 0.00 0.00 5.01
841 857 1.394618 CTCCTCCTCCTAAGACGGTG 58.605 60.000 0.00 0.00 0.00 4.94
842 858 0.396001 GCTCCTCCTCCTAAGACGGT 60.396 60.000 0.00 0.00 0.00 4.83
843 859 0.395862 TGCTCCTCCTCCTAAGACGG 60.396 60.000 0.00 0.00 0.00 4.79
844 860 0.741915 GTGCTCCTCCTCCTAAGACG 59.258 60.000 0.00 0.00 0.00 4.18
845 861 0.741915 CGTGCTCCTCCTCCTAAGAC 59.258 60.000 0.00 0.00 0.00 3.01
846 862 1.038130 GCGTGCTCCTCCTCCTAAGA 61.038 60.000 0.00 0.00 0.00 2.10
847 863 1.323271 TGCGTGCTCCTCCTCCTAAG 61.323 60.000 0.00 0.00 0.00 2.18
848 864 1.304962 TGCGTGCTCCTCCTCCTAA 60.305 57.895 0.00 0.00 0.00 2.69
876 892 1.461091 TTATCACCTCCGGCCGCTAG 61.461 60.000 22.85 19.00 0.00 3.42
878 894 2.100879 GATTATCACCTCCGGCCGCT 62.101 60.000 22.85 0.00 0.00 5.52
909 925 4.100653 CAGCCACATGGAGAAGATAGAGAA 59.899 45.833 0.87 0.00 37.39 2.87
910 926 3.640498 CAGCCACATGGAGAAGATAGAGA 59.360 47.826 0.87 0.00 37.39 3.10
911 927 3.803021 GCAGCCACATGGAGAAGATAGAG 60.803 52.174 0.87 0.00 37.39 2.43
915 931 0.917533 AGCAGCCACATGGAGAAGAT 59.082 50.000 0.87 0.00 37.39 2.40
924 940 1.281287 AGTGAATGAGAGCAGCCACAT 59.719 47.619 0.00 0.00 34.62 3.21
1081 1097 2.183811 CCTCGTCTGCAGGAGCTG 59.816 66.667 15.13 4.85 42.74 4.24
1147 1171 2.786495 ATAGCGTCAGTGAGCGGGG 61.786 63.158 14.17 0.00 38.61 5.73
1179 1203 2.032528 CCTCCACGAAAGCTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
1189 1213 2.743928 GAGCAGGTTGCCTCCACG 60.744 66.667 0.00 0.00 46.52 4.94
1211 1235 1.667724 CGTGATGCCTCTTGGACATTC 59.332 52.381 0.00 0.00 32.81 2.67
1226 1250 1.405526 CCATGTTTCCCTCGTCGTGAT 60.406 52.381 0.00 0.00 0.00 3.06
1230 1254 1.732259 CTTTCCATGTTTCCCTCGTCG 59.268 52.381 0.00 0.00 0.00 5.12
1309 1333 3.294214 GGGAAAGCAGGAATGACATCAT 58.706 45.455 0.00 0.00 38.41 2.45
1317 1341 1.745489 GTCGCGGGAAAGCAGGAAT 60.745 57.895 6.13 0.00 36.85 3.01
1393 1417 1.347707 GGGATCATCAATGCGTAGGGA 59.652 52.381 0.00 0.00 0.00 4.20
1492 1516 1.347707 ACCAGAACGGATGTCACATGT 59.652 47.619 0.00 0.00 38.63 3.21
1493 1517 2.099141 ACCAGAACGGATGTCACATG 57.901 50.000 0.00 0.00 38.63 3.21
1732 1765 4.999950 ACAAGCTTTCATCTCTAACACCTG 59.000 41.667 0.00 0.00 0.00 4.00
1807 1840 4.882427 TGGATCAAAACCAAAACTCGTGTA 59.118 37.500 0.00 0.00 34.25 2.90
2071 2110 7.171678 GCATACCCTTATCGGATAAGATATTGC 59.828 40.741 30.23 26.33 43.85 3.56
2102 2147 6.502136 AGAACAATAGGAGTTAGCAAAAGC 57.498 37.500 0.00 0.00 0.00 3.51
2328 2404 5.359009 ACCAAGATTGATAATCCAAGCTGTG 59.641 40.000 0.00 0.00 41.33 3.66
2427 2503 6.305693 ACTTCAGAAGTACACAATGCTTTC 57.694 37.500 14.58 0.00 40.69 2.62
2486 2570 3.777106 TCTCAAAACAGACAGCTGGAT 57.223 42.857 19.93 2.39 46.60 3.41
2487 2571 3.558931 TTCTCAAAACAGACAGCTGGA 57.441 42.857 19.93 1.59 46.60 3.86
2911 3034 9.829507 AATCAAACAGAAGGTCTATTCTATCTG 57.170 33.333 0.00 0.00 37.43 2.90
3000 3131 1.048601 AGTGGTGCACGGGGATATAG 58.951 55.000 11.45 0.00 39.64 1.31
3087 3218 2.984471 CAGCATCAATATTCAATGGCGC 59.016 45.455 0.00 0.00 0.00 6.53
3093 3224 5.900865 TGACAAGCAGCATCAATATTCAA 57.099 34.783 0.00 0.00 0.00 2.69
3142 3273 1.454479 ACCATGGGCATGCTACTGC 60.454 57.895 18.92 0.00 41.53 4.40
3143 3274 1.105167 CCACCATGGGCATGCTACTG 61.105 60.000 18.92 11.74 37.49 2.74
3144 3275 1.228228 CCACCATGGGCATGCTACT 59.772 57.895 18.92 0.00 37.49 2.57
3145 3276 3.846180 CCACCATGGGCATGCTAC 58.154 61.111 18.92 11.70 37.49 3.58
3254 3385 5.949952 TCAGTACTGCCTACATTAGAACAGA 59.050 40.000 18.45 0.00 35.27 3.41
3332 3463 1.399791 GACAACCATAGAGCAGCTTGC 59.600 52.381 0.00 0.47 45.46 4.01
3364 3495 3.829601 TGGTAGGCAACATTTTTGGGTAG 59.170 43.478 0.00 0.00 41.41 3.18
3377 3508 9.536510 AGGTTTTAACTTATATTTGGTAGGCAA 57.463 29.630 0.00 0.00 0.00 4.52
3385 3516 9.774742 GAGAGCACAGGTTTTAACTTATATTTG 57.225 33.333 0.00 0.00 0.00 2.32
3389 3520 7.253905 AGGAGAGCACAGGTTTTAACTTATA 57.746 36.000 0.00 0.00 0.00 0.98
3410 3541 6.071320 TCTAGCTATCAGAATGCTACAAGGA 58.929 40.000 0.00 0.00 38.15 3.36
3411 3542 6.338214 TCTAGCTATCAGAATGCTACAAGG 57.662 41.667 0.00 0.00 38.15 3.61
3412 3543 7.600960 TGATCTAGCTATCAGAATGCTACAAG 58.399 38.462 0.00 0.00 38.15 3.16
3415 3546 6.811170 GGTTGATCTAGCTATCAGAATGCTAC 59.189 42.308 0.00 0.00 37.20 3.58
3416 3547 6.494835 TGGTTGATCTAGCTATCAGAATGCTA 59.505 38.462 7.82 7.31 37.20 3.49
3423 3574 6.154203 TCAGTTGGTTGATCTAGCTATCAG 57.846 41.667 7.82 0.00 37.20 2.90
3428 3579 4.899352 AGTTCAGTTGGTTGATCTAGCT 57.101 40.909 7.82 0.00 0.00 3.32
3448 3599 7.166851 AGACATGCAGGGAATATTGATAGAAG 58.833 38.462 2.31 0.00 0.00 2.85
3453 3604 5.075493 GGAAGACATGCAGGGAATATTGAT 58.925 41.667 2.31 0.00 0.00 2.57
3454 3605 4.464008 GGAAGACATGCAGGGAATATTGA 58.536 43.478 2.31 0.00 0.00 2.57
3459 3611 1.002069 TGGGAAGACATGCAGGGAAT 58.998 50.000 2.31 0.00 0.00 3.01
3460 3612 0.776810 TTGGGAAGACATGCAGGGAA 59.223 50.000 2.31 0.00 0.00 3.97
3472 3624 4.763793 ACATGAAACACTCAGATTGGGAAG 59.236 41.667 0.00 0.00 37.52 3.46
3477 3629 4.214758 TGAGCACATGAAACACTCAGATTG 59.785 41.667 0.00 0.00 37.52 2.67
3478 3630 4.392047 TGAGCACATGAAACACTCAGATT 58.608 39.130 0.00 0.00 37.52 2.40
3479 3631 4.011966 TGAGCACATGAAACACTCAGAT 57.988 40.909 0.00 0.00 37.52 2.90
3486 3638 2.613595 GACACACTGAGCACATGAAACA 59.386 45.455 0.00 0.00 0.00 2.83
3501 3653 2.287608 GCCTAAACAGCAAAGGACACAC 60.288 50.000 0.00 0.00 31.64 3.82
3509 3661 1.960689 GAACCCTGCCTAAACAGCAAA 59.039 47.619 0.00 0.00 40.35 3.68
3520 3672 2.695147 CCAATAGAAATGGAACCCTGCC 59.305 50.000 0.00 0.00 40.56 4.85
3543 3695 4.250305 ACCAGCCGAACAACGCCT 62.250 61.111 0.00 0.00 41.07 5.52
3553 3705 2.202756 GGCGAAGTAGACCAGCCG 60.203 66.667 0.00 0.00 38.28 5.52
3574 3726 3.515502 AGATCCATGAAGACCGAAGAACA 59.484 43.478 0.00 0.00 0.00 3.18
3585 3737 4.347360 TGATGGTGCTAGATCCATGAAG 57.653 45.455 19.21 0.00 43.45 3.02
3639 3791 2.809446 TGAGCGAGTTCATACGAATGG 58.191 47.619 0.00 0.00 32.61 3.16
3645 3797 7.742089 GCAAATTACATATGAGCGAGTTCATAC 59.258 37.037 10.38 0.00 41.46 2.39
3674 3826 2.096466 TGCATTCGAGCAACAAAGTACG 60.096 45.455 0.00 0.00 42.46 3.67
3682 3834 3.186409 TGTTCTTACTGCATTCGAGCAAC 59.814 43.478 0.72 0.00 45.13 4.17
3690 3842 6.919662 CACTTCAAACATGTTCTTACTGCATT 59.080 34.615 12.39 0.00 0.00 3.56
3691 3843 6.039717 ACACTTCAAACATGTTCTTACTGCAT 59.960 34.615 12.39 0.00 0.00 3.96
3738 3890 4.572985 CTCAGTTCACCAAATGAGCAAA 57.427 40.909 0.00 0.00 45.13 3.68
3750 3902 0.394565 AGGCCTCACACTCAGTTCAC 59.605 55.000 0.00 0.00 0.00 3.18
3756 3908 0.764369 AGGTTCAGGCCTCACACTCA 60.764 55.000 0.00 0.00 32.39 3.41
3760 3912 2.879756 GCAAATAGGTTCAGGCCTCACA 60.880 50.000 0.00 0.00 39.94 3.58
3795 3947 5.997746 TCCTTGAAACATCTTACCAGAACAG 59.002 40.000 0.00 0.00 30.76 3.16
3800 3952 4.697352 CAGGTCCTTGAAACATCTTACCAG 59.303 45.833 0.00 0.00 0.00 4.00
3816 3968 3.709653 TGAAACAACACTAGACAGGTCCT 59.290 43.478 0.00 0.00 0.00 3.85
3829 3981 1.686355 ACCGCAATCCTGAAACAACA 58.314 45.000 0.00 0.00 0.00 3.33
3845 3997 4.863689 TCACACCGTACACATTAATTACCG 59.136 41.667 0.00 0.00 0.00 4.02
3847 3999 7.745015 ACAATCACACCGTACACATTAATTAC 58.255 34.615 0.00 0.00 0.00 1.89
3902 4054 3.680642 GTCATGCATAAACACGCTGAT 57.319 42.857 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.