Multiple sequence alignment - TraesCS6B01G408500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G408500 chr6B 100.000 2255 0 0 1 2255 682655255 682657509 0.000000e+00 4165.0
1 TraesCS6B01G408500 chr6B 77.948 1043 79 69 370 1373 682588008 682588938 1.540000e-141 512.0
2 TraesCS6B01G408500 chr6B 98.182 275 5 0 1 275 29970803 29970529 4.360000e-132 481.0
3 TraesCS6B01G408500 chr6B 97.455 275 7 0 1 275 544062630 544062356 9.430000e-129 470.0
4 TraesCS6B01G408500 chr6D 88.644 1224 51 31 275 1471 450164361 450165523 0.000000e+00 1410.0
5 TraesCS6B01G408500 chr6D 85.575 617 43 20 1611 2215 450165681 450166263 2.480000e-169 604.0
6 TraesCS6B01G408500 chr6D 82.881 590 47 34 730 1301 450136625 450137178 4.360000e-132 481.0
7 TraesCS6B01G408500 chr6D 85.145 276 22 13 274 538 450136237 450136504 4.780000e-67 265.0
8 TraesCS6B01G408500 chr6A 86.691 1082 53 40 274 1339 595658383 595659389 0.000000e+00 1116.0
9 TraesCS6B01G408500 chr6A 84.089 949 81 43 274 1195 595647735 595648640 0.000000e+00 852.0
10 TraesCS6B01G408500 chr6A 88.581 613 48 14 1614 2215 595659832 595660433 0.000000e+00 725.0
11 TraesCS6B01G408500 chr6A 89.516 124 9 3 1473 1594 595659722 595659843 1.080000e-33 154.0
12 TraesCS6B01G408500 chr6A 89.157 83 5 4 1323 1402 595659557 595659638 1.430000e-17 100.0
13 TraesCS6B01G408500 chr6A 89.041 73 4 4 1228 1300 595648643 595648711 1.110000e-13 87.9
14 TraesCS6B01G408500 chr2B 98.545 275 4 0 1 275 669244894 669244620 9.360000e-134 486.0
15 TraesCS6B01G408500 chr2B 96.727 275 9 0 1 275 768623233 768622959 2.040000e-125 459.0
16 TraesCS6B01G408500 chr2B 94.909 275 14 0 1 275 770061177 770060903 4.450000e-117 431.0
17 TraesCS6B01G408500 chr1B 97.091 275 8 0 1 275 651899907 651899633 4.390000e-127 464.0
18 TraesCS6B01G408500 chr4D 96.364 275 10 0 1 275 483622318 483622592 9.500000e-124 453.0
19 TraesCS6B01G408500 chr3A 96.364 275 10 0 1 275 100866824 100867098 9.500000e-124 453.0
20 TraesCS6B01G408500 chr3A 96.364 275 10 0 1 275 127175961 127175687 9.500000e-124 453.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G408500 chr6B 682655255 682657509 2254 False 4165.00 4165 100.00000 1 2255 1 chr6B.!!$F2 2254
1 TraesCS6B01G408500 chr6B 682588008 682588938 930 False 512.00 512 77.94800 370 1373 1 chr6B.!!$F1 1003
2 TraesCS6B01G408500 chr6D 450164361 450166263 1902 False 1007.00 1410 87.10950 275 2215 2 chr6D.!!$F2 1940
3 TraesCS6B01G408500 chr6D 450136237 450137178 941 False 373.00 481 84.01300 274 1301 2 chr6D.!!$F1 1027
4 TraesCS6B01G408500 chr6A 595658383 595660433 2050 False 523.75 1116 88.48625 274 2215 4 chr6A.!!$F2 1941
5 TraesCS6B01G408500 chr6A 595647735 595648711 976 False 469.95 852 86.56500 274 1300 2 chr6A.!!$F1 1026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.03563 AAGGCTGCATGGTCAGAGAC 60.036 55.0 0.5 0.0 36.19 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1945 0.041833 TCAGTCAAGGAGCCTAGCCT 59.958 55.0 0.0 0.0 37.35 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.586435 AGAATGCCAAATTTTATTAACTACAGC 57.414 29.630 0.00 0.00 0.00 4.40
31 32 9.364989 GAATGCCAAATTTTATTAACTACAGCA 57.635 29.630 0.00 0.00 0.00 4.41
32 33 8.931385 ATGCCAAATTTTATTAACTACAGCAG 57.069 30.769 0.00 0.00 0.00 4.24
33 34 6.811170 TGCCAAATTTTATTAACTACAGCAGC 59.189 34.615 0.00 0.00 0.00 5.25
34 35 6.811170 GCCAAATTTTATTAACTACAGCAGCA 59.189 34.615 0.00 0.00 0.00 4.41
35 36 7.330700 GCCAAATTTTATTAACTACAGCAGCAA 59.669 33.333 0.00 0.00 0.00 3.91
36 37 8.863049 CCAAATTTTATTAACTACAGCAGCAAG 58.137 33.333 0.00 0.00 0.00 4.01
37 38 9.624697 CAAATTTTATTAACTACAGCAGCAAGA 57.375 29.630 0.00 0.00 0.00 3.02
40 41 8.560355 TTTTATTAACTACAGCAGCAAGATCA 57.440 30.769 0.00 0.00 0.00 2.92
41 42 8.737168 TTTATTAACTACAGCAGCAAGATCAT 57.263 30.769 0.00 0.00 0.00 2.45
42 43 6.857777 ATTAACTACAGCAGCAAGATCATC 57.142 37.500 0.00 0.00 0.00 2.92
43 44 4.484537 AACTACAGCAGCAAGATCATCT 57.515 40.909 0.00 0.00 0.00 2.90
44 45 4.057406 ACTACAGCAGCAAGATCATCTC 57.943 45.455 0.00 0.00 0.00 2.75
45 46 3.705579 ACTACAGCAGCAAGATCATCTCT 59.294 43.478 0.00 0.00 34.96 3.10
46 47 2.907634 ACAGCAGCAAGATCATCTCTG 58.092 47.619 0.00 0.00 33.29 3.35
47 48 2.214347 CAGCAGCAAGATCATCTCTGG 58.786 52.381 5.69 0.00 33.29 3.86
48 49 1.838715 AGCAGCAAGATCATCTCTGGT 59.161 47.619 2.87 2.87 33.29 4.00
49 50 3.036819 AGCAGCAAGATCATCTCTGGTA 58.963 45.455 6.33 0.00 30.47 3.25
50 51 3.453717 AGCAGCAAGATCATCTCTGGTAA 59.546 43.478 6.33 0.00 30.47 2.85
51 52 4.080695 AGCAGCAAGATCATCTCTGGTAAA 60.081 41.667 6.33 0.00 30.47 2.01
52 53 4.034975 GCAGCAAGATCATCTCTGGTAAAC 59.965 45.833 5.69 0.00 33.29 2.01
53 54 4.574013 CAGCAAGATCATCTCTGGTAAACC 59.426 45.833 0.00 0.00 33.29 3.27
54 55 4.225942 AGCAAGATCATCTCTGGTAAACCA 59.774 41.667 1.13 1.13 45.30 3.67
55 56 4.943705 GCAAGATCATCTCTGGTAAACCAA 59.056 41.667 2.97 0.00 46.97 3.67
56 57 5.163713 GCAAGATCATCTCTGGTAAACCAAC 60.164 44.000 2.97 0.00 46.97 3.77
57 58 5.762179 AGATCATCTCTGGTAAACCAACA 57.238 39.130 2.97 0.00 46.97 3.33
58 59 6.319048 AGATCATCTCTGGTAAACCAACAT 57.681 37.500 2.97 0.00 46.97 2.71
59 60 7.437713 AGATCATCTCTGGTAAACCAACATA 57.562 36.000 2.97 0.00 46.97 2.29
60 61 7.861629 AGATCATCTCTGGTAAACCAACATAA 58.138 34.615 2.97 0.00 46.97 1.90
61 62 8.497745 AGATCATCTCTGGTAAACCAACATAAT 58.502 33.333 2.97 0.00 46.97 1.28
62 63 9.125026 GATCATCTCTGGTAAACCAACATAATT 57.875 33.333 2.97 0.00 46.97 1.40
63 64 8.506168 TCATCTCTGGTAAACCAACATAATTC 57.494 34.615 2.97 0.00 46.97 2.17
64 65 8.106462 TCATCTCTGGTAAACCAACATAATTCA 58.894 33.333 2.97 0.00 46.97 2.57
65 66 8.739039 CATCTCTGGTAAACCAACATAATTCAA 58.261 33.333 2.97 0.00 46.97 2.69
66 67 8.698973 TCTCTGGTAAACCAACATAATTCAAA 57.301 30.769 2.97 0.00 46.97 2.69
67 68 9.137459 TCTCTGGTAAACCAACATAATTCAAAA 57.863 29.630 2.97 0.00 46.97 2.44
68 69 9.191995 CTCTGGTAAACCAACATAATTCAAAAC 57.808 33.333 2.97 0.00 46.97 2.43
69 70 7.863375 TCTGGTAAACCAACATAATTCAAAACG 59.137 33.333 2.97 0.00 46.97 3.60
70 71 7.713750 TGGTAAACCAACATAATTCAAAACGA 58.286 30.769 0.00 0.00 44.35 3.85
71 72 8.195436 TGGTAAACCAACATAATTCAAAACGAA 58.805 29.630 0.00 0.00 44.35 3.85
72 73 9.032420 GGTAAACCAACATAATTCAAAACGAAA 57.968 29.630 0.00 0.00 34.76 3.46
75 76 7.707774 ACCAACATAATTCAAAACGAAAAGG 57.292 32.000 0.00 0.00 37.12 3.11
76 77 7.269316 ACCAACATAATTCAAAACGAAAAGGT 58.731 30.769 0.00 0.00 37.12 3.50
77 78 7.766738 ACCAACATAATTCAAAACGAAAAGGTT 59.233 29.630 0.00 0.00 37.12 3.50
78 79 8.608317 CCAACATAATTCAAAACGAAAAGGTTT 58.392 29.630 0.00 0.00 41.14 3.27
87 88 9.857957 TTCAAAACGAAAAGGTTTATTAGTTGT 57.142 25.926 0.00 0.00 37.74 3.32
91 92 8.992287 AACGAAAAGGTTTATTAGTTGTAACG 57.008 30.769 0.00 0.00 0.00 3.18
92 93 7.575365 ACGAAAAGGTTTATTAGTTGTAACGG 58.425 34.615 0.00 0.00 0.00 4.44
93 94 7.226523 ACGAAAAGGTTTATTAGTTGTAACGGT 59.773 33.333 0.00 0.00 0.00 4.83
94 95 8.069574 CGAAAAGGTTTATTAGTTGTAACGGTT 58.930 33.333 0.00 0.00 0.00 4.44
95 96 9.734620 GAAAAGGTTTATTAGTTGTAACGGTTT 57.265 29.630 0.00 0.00 0.00 3.27
100 101 9.393249 GGTTTATTAGTTGTAACGGTTTTAACC 57.607 33.333 0.00 1.42 45.76 2.85
101 102 9.393249 GTTTATTAGTTGTAACGGTTTTAACCC 57.607 33.333 0.00 0.00 46.53 4.11
102 103 6.573664 ATTAGTTGTAACGGTTTTAACCCC 57.426 37.500 0.00 0.00 46.53 4.95
103 104 2.877786 AGTTGTAACGGTTTTAACCCCG 59.122 45.455 9.80 9.80 46.53 5.73
109 110 0.169451 CGGTTTTAACCCCGTCATGC 59.831 55.000 6.09 0.00 46.53 4.06
110 111 1.249407 GGTTTTAACCCCGTCATGCA 58.751 50.000 0.00 0.00 43.43 3.96
111 112 1.822371 GGTTTTAACCCCGTCATGCAT 59.178 47.619 0.00 0.00 43.43 3.96
112 113 3.018149 GGTTTTAACCCCGTCATGCATA 58.982 45.455 0.00 0.00 43.43 3.14
113 114 3.444388 GGTTTTAACCCCGTCATGCATAA 59.556 43.478 0.00 0.00 43.43 1.90
114 115 4.439563 GGTTTTAACCCCGTCATGCATAAG 60.440 45.833 0.00 0.00 43.43 1.73
115 116 1.961793 TAACCCCGTCATGCATAAGC 58.038 50.000 0.00 0.00 42.57 3.09
132 133 4.728409 CAAGGCTGCATGGTCAGA 57.272 55.556 0.50 0.00 36.19 3.27
133 134 2.478989 CAAGGCTGCATGGTCAGAG 58.521 57.895 0.50 0.00 36.19 3.35
134 135 0.035725 CAAGGCTGCATGGTCAGAGA 60.036 55.000 0.50 0.00 36.19 3.10
135 136 0.035630 AAGGCTGCATGGTCAGAGAC 60.036 55.000 0.50 0.00 36.19 3.36
136 137 1.196766 AGGCTGCATGGTCAGAGACA 61.197 55.000 0.50 0.00 36.19 3.41
137 138 1.023513 GGCTGCATGGTCAGAGACAC 61.024 60.000 0.50 0.00 36.19 3.67
138 139 1.023513 GCTGCATGGTCAGAGACACC 61.024 60.000 4.68 0.00 36.19 4.16
139 140 0.612229 CTGCATGGTCAGAGACACCT 59.388 55.000 0.00 0.00 36.19 4.00
140 141 0.610174 TGCATGGTCAGAGACACCTC 59.390 55.000 0.00 0.00 39.72 3.85
153 154 2.400467 ACACCTCTAACCAGTGTCCT 57.600 50.000 0.00 0.00 40.65 3.85
154 155 1.971357 ACACCTCTAACCAGTGTCCTG 59.029 52.381 0.00 0.00 40.65 3.86
155 156 2.248248 CACCTCTAACCAGTGTCCTGA 58.752 52.381 0.00 0.00 41.50 3.86
156 157 2.028930 CACCTCTAACCAGTGTCCTGAC 60.029 54.545 0.00 0.00 41.50 3.51
157 158 2.248248 CCTCTAACCAGTGTCCTGACA 58.752 52.381 0.00 0.00 41.50 3.58
158 159 2.232452 CCTCTAACCAGTGTCCTGACAG 59.768 54.545 0.00 0.00 42.74 3.51
159 160 2.894126 CTCTAACCAGTGTCCTGACAGT 59.106 50.000 0.00 0.52 45.21 3.55
160 161 4.079970 CTCTAACCAGTGTCCTGACAGTA 58.920 47.826 7.28 0.00 42.66 2.74
161 162 4.476297 TCTAACCAGTGTCCTGACAGTAA 58.524 43.478 7.28 0.00 42.66 2.24
162 163 3.470645 AACCAGTGTCCTGACAGTAAC 57.529 47.619 7.28 0.14 42.66 2.50
163 164 2.679082 ACCAGTGTCCTGACAGTAACT 58.321 47.619 7.28 0.00 42.66 2.24
164 165 3.840991 ACCAGTGTCCTGACAGTAACTA 58.159 45.455 7.28 0.00 42.66 2.24
165 166 3.827302 ACCAGTGTCCTGACAGTAACTAG 59.173 47.826 7.28 0.00 42.66 2.57
166 167 3.827302 CCAGTGTCCTGACAGTAACTAGT 59.173 47.826 7.28 0.00 42.66 2.57
167 168 5.008331 CCAGTGTCCTGACAGTAACTAGTA 58.992 45.833 7.28 0.00 42.66 1.82
168 169 5.124138 CCAGTGTCCTGACAGTAACTAGTAG 59.876 48.000 7.28 0.00 42.66 2.57
169 170 5.938710 CAGTGTCCTGACAGTAACTAGTAGA 59.061 44.000 3.59 0.00 42.66 2.59
170 171 6.430308 CAGTGTCCTGACAGTAACTAGTAGAA 59.570 42.308 3.59 0.00 42.66 2.10
171 172 7.002879 AGTGTCCTGACAGTAACTAGTAGAAA 58.997 38.462 3.59 0.00 42.72 2.52
172 173 7.670559 AGTGTCCTGACAGTAACTAGTAGAAAT 59.329 37.037 3.59 0.00 42.72 2.17
173 174 8.305317 GTGTCCTGACAGTAACTAGTAGAAATT 58.695 37.037 3.59 0.00 42.74 1.82
174 175 8.867097 TGTCCTGACAGTAACTAGTAGAAATTT 58.133 33.333 3.59 0.00 36.21 1.82
175 176 9.708092 GTCCTGACAGTAACTAGTAGAAATTTT 57.292 33.333 3.59 0.00 0.00 1.82
186 187 8.563123 ACTAGTAGAAATTTTAACTCCCAAGC 57.437 34.615 3.59 0.00 0.00 4.01
187 188 8.161425 ACTAGTAGAAATTTTAACTCCCAAGCA 58.839 33.333 3.59 0.00 0.00 3.91
188 189 7.454260 AGTAGAAATTTTAACTCCCAAGCAG 57.546 36.000 0.00 0.00 0.00 4.24
189 190 5.728637 AGAAATTTTAACTCCCAAGCAGG 57.271 39.130 0.00 0.00 37.03 4.85
201 202 3.567478 CCAAGCAGGGCTAACTAAGAT 57.433 47.619 0.00 0.00 38.25 2.40
202 203 3.471680 CCAAGCAGGGCTAACTAAGATC 58.528 50.000 0.00 0.00 38.25 2.75
203 204 3.471680 CAAGCAGGGCTAACTAAGATCC 58.528 50.000 0.00 0.00 38.25 3.36
204 205 3.053359 AGCAGGGCTAACTAAGATCCT 57.947 47.619 0.00 0.00 36.99 3.24
205 206 4.200447 AGCAGGGCTAACTAAGATCCTA 57.800 45.455 0.00 0.00 36.99 2.94
206 207 4.757692 AGCAGGGCTAACTAAGATCCTAT 58.242 43.478 0.00 0.00 36.99 2.57
207 208 4.775253 AGCAGGGCTAACTAAGATCCTATC 59.225 45.833 0.00 0.00 36.99 2.08
208 209 4.081365 GCAGGGCTAACTAAGATCCTATCC 60.081 50.000 0.00 0.00 31.62 2.59
209 210 5.087323 CAGGGCTAACTAAGATCCTATCCA 58.913 45.833 0.00 0.00 31.62 3.41
210 211 5.544176 CAGGGCTAACTAAGATCCTATCCAA 59.456 44.000 0.00 0.00 31.62 3.53
211 212 5.544562 AGGGCTAACTAAGATCCTATCCAAC 59.455 44.000 0.00 0.00 31.21 3.77
212 213 5.544562 GGGCTAACTAAGATCCTATCCAACT 59.455 44.000 0.00 0.00 0.00 3.16
213 214 6.043358 GGGCTAACTAAGATCCTATCCAACTT 59.957 42.308 0.00 0.00 0.00 2.66
214 215 7.234988 GGGCTAACTAAGATCCTATCCAACTTA 59.765 40.741 0.00 0.00 0.00 2.24
215 216 8.648693 GGCTAACTAAGATCCTATCCAACTTAA 58.351 37.037 0.00 0.00 0.00 1.85
216 217 9.478768 GCTAACTAAGATCCTATCCAACTTAAC 57.521 37.037 0.00 0.00 0.00 2.01
223 224 8.581253 AGATCCTATCCAACTTAACAAAAAGG 57.419 34.615 0.00 0.00 0.00 3.11
224 225 7.615757 AGATCCTATCCAACTTAACAAAAAGGG 59.384 37.037 0.00 0.00 0.00 3.95
225 226 6.014012 TCCTATCCAACTTAACAAAAAGGGG 58.986 40.000 0.00 0.00 0.00 4.79
226 227 6.014012 CCTATCCAACTTAACAAAAAGGGGA 58.986 40.000 0.00 0.00 37.99 4.81
227 228 6.667848 CCTATCCAACTTAACAAAAAGGGGAT 59.332 38.462 13.21 13.21 42.53 3.85
228 229 6.605471 ATCCAACTTAACAAAAAGGGGATC 57.395 37.500 6.36 0.00 38.99 3.36
229 230 5.459505 TCCAACTTAACAAAAAGGGGATCA 58.540 37.500 0.00 0.00 32.42 2.92
230 231 5.900123 TCCAACTTAACAAAAAGGGGATCAA 59.100 36.000 0.00 0.00 32.42 2.57
231 232 6.556874 TCCAACTTAACAAAAAGGGGATCAAT 59.443 34.615 0.00 0.00 32.42 2.57
232 233 6.873605 CCAACTTAACAAAAAGGGGATCAATC 59.126 38.462 0.00 0.00 30.66 2.67
233 234 7.256296 CCAACTTAACAAAAAGGGGATCAATCT 60.256 37.037 0.00 0.00 30.66 2.40
234 235 7.232118 ACTTAACAAAAAGGGGATCAATCTG 57.768 36.000 0.00 0.00 0.00 2.90
235 236 6.211384 ACTTAACAAAAAGGGGATCAATCTGG 59.789 38.462 0.00 0.00 0.00 3.86
236 237 4.132122 ACAAAAAGGGGATCAATCTGGT 57.868 40.909 0.00 0.00 0.00 4.00
237 238 4.492646 ACAAAAAGGGGATCAATCTGGTT 58.507 39.130 0.00 0.00 0.00 3.67
238 239 5.650283 ACAAAAAGGGGATCAATCTGGTTA 58.350 37.500 0.00 0.00 0.00 2.85
239 240 6.263754 ACAAAAAGGGGATCAATCTGGTTAT 58.736 36.000 0.00 0.00 0.00 1.89
240 241 6.730507 ACAAAAAGGGGATCAATCTGGTTATT 59.269 34.615 0.00 0.00 0.00 1.40
241 242 7.093333 ACAAAAAGGGGATCAATCTGGTTATTC 60.093 37.037 0.00 0.00 0.00 1.75
242 243 4.357918 AGGGGATCAATCTGGTTATTCG 57.642 45.455 0.00 0.00 0.00 3.34
243 244 3.973973 AGGGGATCAATCTGGTTATTCGA 59.026 43.478 0.00 0.00 0.00 3.71
244 245 4.065789 GGGGATCAATCTGGTTATTCGAC 58.934 47.826 0.00 0.00 0.00 4.20
245 246 4.065789 GGGATCAATCTGGTTATTCGACC 58.934 47.826 0.00 0.00 40.23 4.79
258 259 7.299586 TGGTTATTCGACCAAGTAAAATTTCG 58.700 34.615 0.00 0.00 46.33 3.46
259 260 6.249893 GGTTATTCGACCAAGTAAAATTTCGC 59.750 38.462 0.00 0.00 39.57 4.70
260 261 3.817148 TCGACCAAGTAAAATTTCGCC 57.183 42.857 0.00 0.00 0.00 5.54
261 262 2.485038 TCGACCAAGTAAAATTTCGCCC 59.515 45.455 0.00 0.00 0.00 6.13
262 263 2.726681 CGACCAAGTAAAATTTCGCCCG 60.727 50.000 0.00 0.00 0.00 6.13
263 264 1.542472 ACCAAGTAAAATTTCGCCCGG 59.458 47.619 0.00 0.00 0.00 5.73
264 265 1.813786 CCAAGTAAAATTTCGCCCGGA 59.186 47.619 0.73 0.00 0.00 5.14
265 266 2.229302 CCAAGTAAAATTTCGCCCGGAA 59.771 45.455 0.73 0.00 0.00 4.30
271 272 2.428187 TTTCGCCCGGAAAGCTCA 59.572 55.556 0.73 0.00 39.67 4.26
272 273 1.228003 TTTCGCCCGGAAAGCTCAA 60.228 52.632 0.73 0.00 39.67 3.02
278 279 1.660560 CCCGGAAAGCTCAAGCATGG 61.661 60.000 0.73 0.00 45.16 3.66
340 341 1.066454 GTTTGACCGTTTGTGAAGGGG 59.934 52.381 3.33 0.00 43.49 4.79
341 342 0.466555 TTGACCGTTTGTGAAGGGGG 60.467 55.000 3.33 0.00 43.49 5.40
362 379 3.118738 GGGAGTGACTTGGATGAATACGT 60.119 47.826 0.00 0.00 0.00 3.57
363 380 4.504858 GGAGTGACTTGGATGAATACGTT 58.495 43.478 0.00 0.00 0.00 3.99
364 381 4.330074 GGAGTGACTTGGATGAATACGTTG 59.670 45.833 0.00 0.00 0.00 4.10
365 382 4.253685 AGTGACTTGGATGAATACGTTGG 58.746 43.478 0.00 0.00 0.00 3.77
366 383 4.020573 AGTGACTTGGATGAATACGTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
367 384 4.693566 GTGACTTGGATGAATACGTTGGAA 59.306 41.667 0.00 0.00 0.00 3.53
368 385 4.693566 TGACTTGGATGAATACGTTGGAAC 59.306 41.667 0.00 0.00 0.00 3.62
382 399 1.999648 TGGAACTTGGAAATGCTGCT 58.000 45.000 0.00 0.00 0.00 4.24
433 450 7.201393 CCGAGAATAAGAATGATTGCGTATCTC 60.201 40.741 0.00 0.00 34.17 2.75
443 460 0.107361 TGCGTATCTCTGGACCGAGA 60.107 55.000 15.36 15.36 43.61 4.04
444 461 0.589223 GCGTATCTCTGGACCGAGAG 59.411 60.000 17.20 14.83 42.80 3.20
488 508 5.632244 TTCATCACCATCATCACACTTTG 57.368 39.130 0.00 0.00 0.00 2.77
538 558 4.093743 TGTACACTGTACACATCCTCCAT 58.906 43.478 16.61 0.00 0.00 3.41
539 559 5.265989 TGTACACTGTACACATCCTCCATA 58.734 41.667 16.61 0.00 0.00 2.74
646 666 1.509923 GATCCACTGCTGCTTTGCC 59.490 57.895 0.00 0.00 0.00 4.52
665 689 0.325602 CGGGGCGGGCCTATAAATAA 59.674 55.000 20.88 0.00 36.10 1.40
668 692 1.084289 GGCGGGCCTATAAATAAGCG 58.916 55.000 0.84 0.00 0.00 4.68
706 730 1.228793 CCCACCCACCACAAGTTCA 59.771 57.895 0.00 0.00 0.00 3.18
762 786 0.975040 CCTCTCTGCTACCAGTGCCT 60.975 60.000 0.00 0.00 40.09 4.75
779 803 0.535102 CCTTTGTCTGTCCGTGCCTT 60.535 55.000 0.00 0.00 0.00 4.35
780 804 0.868406 CTTTGTCTGTCCGTGCCTTC 59.132 55.000 0.00 0.00 0.00 3.46
781 805 0.534203 TTTGTCTGTCCGTGCCTTCC 60.534 55.000 0.00 0.00 0.00 3.46
782 806 2.432628 GTCTGTCCGTGCCTTCCG 60.433 66.667 0.00 0.00 0.00 4.30
783 807 2.599281 TCTGTCCGTGCCTTCCGA 60.599 61.111 0.00 0.00 0.00 4.55
881 926 6.469782 TCTTGCCTTGTTTCTTGAATCTTT 57.530 33.333 0.00 0.00 0.00 2.52
888 933 7.428826 CCTTGTTTCTTGAATCTTTAGTGCTT 58.571 34.615 0.00 0.00 0.00 3.91
913 966 5.376854 AGCTGTTTCTAAATCAAACGCAT 57.623 34.783 11.69 0.00 36.66 4.73
920 974 7.273164 TGTTTCTAAATCAAACGCATGCATTAG 59.727 33.333 19.57 12.68 36.66 1.73
948 1005 8.258007 TGGAATATGTTTTGGTCTGAGTACTAG 58.742 37.037 0.00 0.00 0.00 2.57
949 1006 8.258708 GGAATATGTTTTGGTCTGAGTACTAGT 58.741 37.037 0.00 0.00 0.00 2.57
1160 1230 2.646175 CGGCCTCTTCCAAGACGGA 61.646 63.158 0.00 0.00 44.40 4.69
1257 1342 2.672908 CAGCAGCCCCAGTGATCA 59.327 61.111 0.00 0.00 0.00 2.92
1403 1676 8.813951 AGTTCTACTTTTGGTTATGTAGCTAGT 58.186 33.333 0.00 0.00 34.19 2.57
1404 1677 8.870879 GTTCTACTTTTGGTTATGTAGCTAGTG 58.129 37.037 0.00 0.00 34.19 2.74
1407 1680 5.938125 ACTTTTGGTTATGTAGCTAGTGGTG 59.062 40.000 0.00 0.00 0.00 4.17
1424 1697 3.512516 GGCAGCTAGCGCTTTGGG 61.513 66.667 18.68 4.67 46.47 4.12
1425 1698 3.512516 GCAGCTAGCGCTTTGGGG 61.513 66.667 18.68 3.01 46.47 4.96
1426 1699 2.825836 CAGCTAGCGCTTTGGGGG 60.826 66.667 18.68 0.31 46.47 5.40
1427 1700 4.803908 AGCTAGCGCTTTGGGGGC 62.804 66.667 18.68 10.91 46.47 5.80
1474 1761 1.153208 GCCTGAGCCCTGATGAGTG 60.153 63.158 0.00 0.00 0.00 3.51
1476 1763 1.624479 CCTGAGCCCTGATGAGTGCT 61.624 60.000 0.00 0.00 36.62 4.40
1478 1765 0.035725 TGAGCCCTGATGAGTGCTTG 60.036 55.000 0.00 0.00 33.41 4.01
1479 1766 1.375098 GAGCCCTGATGAGTGCTTGC 61.375 60.000 0.00 0.00 33.41 4.01
1518 1853 4.606961 ACGTGAACAATTTGCGAAAATCT 58.393 34.783 0.73 0.00 0.00 2.40
1519 1854 4.440758 ACGTGAACAATTTGCGAAAATCTG 59.559 37.500 0.73 5.77 0.00 2.90
1522 1857 5.687285 GTGAACAATTTGCGAAAATCTGTCT 59.313 36.000 0.73 1.64 0.00 3.41
1540 1875 2.779471 GTCTTTTTACAAACACGGCGTG 59.221 45.455 35.89 35.89 39.75 5.34
1555 1890 2.462889 GGCGTGATGTTTATGCAATGG 58.537 47.619 0.00 0.00 0.00 3.16
1557 1892 2.480073 GCGTGATGTTTATGCAATGGCT 60.480 45.455 0.00 0.00 41.91 4.75
1566 1903 1.471119 ATGCAATGGCTCAGGTGAAG 58.529 50.000 0.00 0.00 41.91 3.02
1567 1904 0.401356 TGCAATGGCTCAGGTGAAGA 59.599 50.000 0.00 0.00 41.91 2.87
1575 1912 1.795286 GCTCAGGTGAAGACGTTTCAG 59.205 52.381 11.69 3.82 0.00 3.02
1594 1931 0.957888 GCAAGTGAGGCTCCTTGACC 60.958 60.000 32.06 19.88 40.36 4.02
1597 1934 0.832135 AGTGAGGCTCCTTGACCGAA 60.832 55.000 12.86 0.00 0.00 4.30
1598 1935 0.250513 GTGAGGCTCCTTGACCGAAT 59.749 55.000 12.86 0.00 0.00 3.34
1599 1936 0.537188 TGAGGCTCCTTGACCGAATC 59.463 55.000 12.86 0.00 0.00 2.52
1600 1937 0.537188 GAGGCTCCTTGACCGAATCA 59.463 55.000 2.15 0.00 34.65 2.57
1601 1938 0.250513 AGGCTCCTTGACCGAATCAC 59.749 55.000 0.00 0.00 36.92 3.06
1602 1939 0.744771 GGCTCCTTGACCGAATCACC 60.745 60.000 0.00 0.00 36.92 4.02
1603 1940 1.084370 GCTCCTTGACCGAATCACCG 61.084 60.000 0.00 0.00 36.92 4.94
1604 1941 0.530744 CTCCTTGACCGAATCACCGA 59.469 55.000 0.00 0.00 36.92 4.69
1605 1942 0.970640 TCCTTGACCGAATCACCGAA 59.029 50.000 0.00 0.00 36.92 4.30
1606 1943 1.345089 TCCTTGACCGAATCACCGAAA 59.655 47.619 0.00 0.00 36.92 3.46
1607 1944 2.027561 TCCTTGACCGAATCACCGAAAT 60.028 45.455 0.00 0.00 36.92 2.17
1608 1945 3.196039 TCCTTGACCGAATCACCGAAATA 59.804 43.478 0.00 0.00 36.92 1.40
1609 1946 3.555956 CCTTGACCGAATCACCGAAATAG 59.444 47.826 0.00 0.00 36.92 1.73
1610 1947 3.173668 TGACCGAATCACCGAAATAGG 57.826 47.619 0.00 0.00 29.99 2.57
1611 1948 1.865340 GACCGAATCACCGAAATAGGC 59.135 52.381 0.00 0.00 33.69 3.93
1612 1949 1.485066 ACCGAATCACCGAAATAGGCT 59.515 47.619 0.00 0.00 33.69 4.58
1613 1950 2.696707 ACCGAATCACCGAAATAGGCTA 59.303 45.455 0.00 0.00 33.69 3.93
1614 1951 3.243771 ACCGAATCACCGAAATAGGCTAG 60.244 47.826 0.00 0.00 33.69 3.42
1615 1952 3.318017 CGAATCACCGAAATAGGCTAGG 58.682 50.000 0.00 0.00 33.69 3.02
1616 1953 2.841442 ATCACCGAAATAGGCTAGGC 57.159 50.000 8.55 8.55 33.69 3.93
1617 1954 1.789523 TCACCGAAATAGGCTAGGCT 58.210 50.000 23.67 23.67 33.69 4.58
1618 1955 1.687123 TCACCGAAATAGGCTAGGCTC 59.313 52.381 23.89 7.67 33.69 4.70
1619 1956 1.049402 ACCGAAATAGGCTAGGCTCC 58.951 55.000 23.89 9.64 33.69 4.70
1620 1957 1.343069 CCGAAATAGGCTAGGCTCCT 58.657 55.000 23.89 8.83 37.72 3.69
1621 1958 1.694696 CCGAAATAGGCTAGGCTCCTT 59.305 52.381 23.89 16.56 35.21 3.36
1622 1959 2.548920 CCGAAATAGGCTAGGCTCCTTG 60.549 54.545 23.89 11.59 35.21 3.61
1623 1960 2.365617 CGAAATAGGCTAGGCTCCTTGA 59.634 50.000 23.89 4.96 35.21 3.02
1624 1961 3.734463 GAAATAGGCTAGGCTCCTTGAC 58.266 50.000 23.89 11.36 35.21 3.18
1625 1962 2.785357 ATAGGCTAGGCTCCTTGACT 57.215 50.000 23.89 10.45 40.15 3.41
1626 1963 1.781786 TAGGCTAGGCTCCTTGACTG 58.218 55.000 23.89 0.00 37.68 3.51
1627 1964 0.041833 AGGCTAGGCTCCTTGACTGA 59.958 55.000 14.10 0.00 35.89 3.41
1631 1968 3.615155 GCTAGGCTCCTTGACTGATTTT 58.385 45.455 0.00 0.00 34.56 1.82
1678 2020 1.203052 CAGGATGCACACAACCATTCC 59.797 52.381 0.00 0.00 41.12 3.01
1680 2022 1.203052 GGATGCACACAACCATTCCTG 59.797 52.381 0.00 0.00 38.58 3.86
1681 2023 1.888512 GATGCACACAACCATTCCTGT 59.111 47.619 0.00 0.00 0.00 4.00
1695 2037 6.790319 ACCATTCCTGTACTGAAATAGGTTT 58.210 36.000 0.60 0.00 0.00 3.27
1696 2038 7.238710 ACCATTCCTGTACTGAAATAGGTTTT 58.761 34.615 0.60 0.00 0.00 2.43
1713 2055 6.670695 AGGTTTTGAGTTTGCTGGATATTT 57.329 33.333 0.00 0.00 0.00 1.40
1733 2075 8.723942 ATATTTCTTCAATCAGACCACACTAC 57.276 34.615 0.00 0.00 0.00 2.73
1734 2076 5.545063 TTCTTCAATCAGACCACACTACA 57.455 39.130 0.00 0.00 0.00 2.74
1735 2077 5.545063 TCTTCAATCAGACCACACTACAA 57.455 39.130 0.00 0.00 0.00 2.41
1736 2078 5.924356 TCTTCAATCAGACCACACTACAAA 58.076 37.500 0.00 0.00 0.00 2.83
1774 2116 8.940397 AAAACTCTGAAGAGGATTCCAAAATA 57.060 30.769 11.87 0.00 46.13 1.40
1876 2223 4.941873 GGTATATATTTCCTGGCTTTCCGG 59.058 45.833 0.00 0.00 38.52 5.14
1880 2227 0.404040 TTTCCTGGCTTTCCGGTGAT 59.596 50.000 0.00 0.00 37.01 3.06
1898 2246 5.760253 CGGTGATAGTAAGCAGGAAATGAAT 59.240 40.000 0.00 0.00 0.00 2.57
1899 2247 6.929049 CGGTGATAGTAAGCAGGAAATGAATA 59.071 38.462 0.00 0.00 0.00 1.75
1900 2248 7.604164 CGGTGATAGTAAGCAGGAAATGAATAT 59.396 37.037 0.00 0.00 0.00 1.28
1933 2281 9.140874 AGAACAGTATTGTGATCATGATCTCTA 57.859 33.333 30.65 24.71 37.67 2.43
1941 2289 4.220382 GTGATCATGATCTCTAGGGTGGAG 59.780 50.000 30.65 0.00 38.60 3.86
1971 2319 0.388134 ACGATCGGTTGAACTCGTGG 60.388 55.000 20.98 2.78 38.16 4.94
2115 2463 2.488153 TGCGTCCTATCCACATCGATAG 59.512 50.000 0.00 0.00 40.93 2.08
2175 2525 0.320771 ACAGAGTGACACATTCCGCC 60.321 55.000 8.59 0.00 0.00 6.13
2180 2530 3.799755 GACACATTCCGCCGGCAC 61.800 66.667 28.98 0.00 0.00 5.01
2185 2535 3.124921 ATTCCGCCGGCACTTTCG 61.125 61.111 28.98 8.71 0.00 3.46
2215 2568 6.972901 GCCAGGCTTTTCAGTTAATATGTTAC 59.027 38.462 3.29 0.00 0.00 2.50
2216 2569 7.148069 GCCAGGCTTTTCAGTTAATATGTTACT 60.148 37.037 3.29 0.00 0.00 2.24
2217 2570 9.391006 CCAGGCTTTTCAGTTAATATGTTACTA 57.609 33.333 0.00 0.00 0.00 1.82
2236 2589 9.726232 TGTTACTAGTAATTGTATTAGTGCGAG 57.274 33.333 18.03 0.00 34.59 5.03
2237 2590 9.941664 GTTACTAGTAATTGTATTAGTGCGAGA 57.058 33.333 18.03 0.00 34.59 4.04
2240 2593 9.517609 ACTAGTAATTGTATTAGTGCGAGAAAG 57.482 33.333 0.00 0.00 32.97 2.62
2241 2594 7.772332 AGTAATTGTATTAGTGCGAGAAAGG 57.228 36.000 0.00 0.00 0.00 3.11
2242 2595 7.328737 AGTAATTGTATTAGTGCGAGAAAGGT 58.671 34.615 0.00 0.00 0.00 3.50
2243 2596 7.822822 AGTAATTGTATTAGTGCGAGAAAGGTT 59.177 33.333 0.00 0.00 0.00 3.50
2244 2597 7.448748 AATTGTATTAGTGCGAGAAAGGTTT 57.551 32.000 0.00 0.00 0.00 3.27
2245 2598 5.856126 TGTATTAGTGCGAGAAAGGTTTG 57.144 39.130 0.00 0.00 0.00 2.93
2246 2599 4.693566 TGTATTAGTGCGAGAAAGGTTTGG 59.306 41.667 0.00 0.00 0.00 3.28
2247 2600 3.478857 TTAGTGCGAGAAAGGTTTGGA 57.521 42.857 0.00 0.00 0.00 3.53
2248 2601 2.568623 AGTGCGAGAAAGGTTTGGAT 57.431 45.000 0.00 0.00 0.00 3.41
2249 2602 3.695830 AGTGCGAGAAAGGTTTGGATA 57.304 42.857 0.00 0.00 0.00 2.59
2250 2603 3.335579 AGTGCGAGAAAGGTTTGGATAC 58.664 45.455 0.00 0.00 0.00 2.24
2251 2604 3.008049 AGTGCGAGAAAGGTTTGGATACT 59.992 43.478 0.00 0.00 37.61 2.12
2252 2605 4.222145 AGTGCGAGAAAGGTTTGGATACTA 59.778 41.667 0.00 0.00 37.61 1.82
2253 2606 4.567159 GTGCGAGAAAGGTTTGGATACTAG 59.433 45.833 0.00 0.00 37.61 2.57
2254 2607 4.222145 TGCGAGAAAGGTTTGGATACTAGT 59.778 41.667 0.00 0.00 37.61 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.586435 GCTGTAGTTAATAAAATTTGGCATTCT 57.414 29.630 0.00 0.00 0.00 2.40
5 6 9.364989 TGCTGTAGTTAATAAAATTTGGCATTC 57.635 29.630 0.00 0.00 0.00 2.67
6 7 9.369904 CTGCTGTAGTTAATAAAATTTGGCATT 57.630 29.630 0.00 0.00 0.00 3.56
7 8 7.492344 GCTGCTGTAGTTAATAAAATTTGGCAT 59.508 33.333 0.00 0.00 0.00 4.40
8 9 6.811170 GCTGCTGTAGTTAATAAAATTTGGCA 59.189 34.615 0.00 0.00 0.00 4.92
9 10 6.811170 TGCTGCTGTAGTTAATAAAATTTGGC 59.189 34.615 0.00 0.00 0.00 4.52
10 11 8.755696 TTGCTGCTGTAGTTAATAAAATTTGG 57.244 30.769 0.00 0.00 0.00 3.28
11 12 9.624697 TCTTGCTGCTGTAGTTAATAAAATTTG 57.375 29.630 0.00 0.00 0.00 2.32
14 15 9.177608 TGATCTTGCTGCTGTAGTTAATAAAAT 57.822 29.630 0.00 0.00 0.00 1.82
15 16 8.560355 TGATCTTGCTGCTGTAGTTAATAAAA 57.440 30.769 0.00 0.00 0.00 1.52
16 17 8.737168 ATGATCTTGCTGCTGTAGTTAATAAA 57.263 30.769 0.00 0.00 0.00 1.40
17 18 8.206867 AGATGATCTTGCTGCTGTAGTTAATAA 58.793 33.333 0.00 0.00 0.00 1.40
18 19 7.730084 AGATGATCTTGCTGCTGTAGTTAATA 58.270 34.615 0.00 0.00 0.00 0.98
19 20 6.590068 AGATGATCTTGCTGCTGTAGTTAAT 58.410 36.000 0.00 0.00 0.00 1.40
20 21 5.982356 AGATGATCTTGCTGCTGTAGTTAA 58.018 37.500 0.00 0.00 0.00 2.01
21 22 5.362143 AGAGATGATCTTGCTGCTGTAGTTA 59.638 40.000 0.00 0.00 32.99 2.24
22 23 4.161942 AGAGATGATCTTGCTGCTGTAGTT 59.838 41.667 0.00 0.00 32.99 2.24
23 24 3.705579 AGAGATGATCTTGCTGCTGTAGT 59.294 43.478 0.00 0.00 32.99 2.73
24 25 4.052608 CAGAGATGATCTTGCTGCTGTAG 58.947 47.826 0.00 0.00 35.47 2.74
25 26 3.181468 CCAGAGATGATCTTGCTGCTGTA 60.181 47.826 0.00 0.00 35.47 2.74
26 27 2.420269 CCAGAGATGATCTTGCTGCTGT 60.420 50.000 0.00 0.00 35.47 4.40
27 28 2.214347 CCAGAGATGATCTTGCTGCTG 58.786 52.381 0.00 0.00 35.47 4.41
28 29 1.838715 ACCAGAGATGATCTTGCTGCT 59.161 47.619 0.00 0.00 35.47 4.24
29 30 2.328819 ACCAGAGATGATCTTGCTGC 57.671 50.000 0.00 0.00 35.47 5.25
30 31 4.574013 GGTTTACCAGAGATGATCTTGCTG 59.426 45.833 0.00 0.13 35.47 4.41
31 32 4.225942 TGGTTTACCAGAGATGATCTTGCT 59.774 41.667 0.00 0.00 42.01 3.91
32 33 4.517285 TGGTTTACCAGAGATGATCTTGC 58.483 43.478 0.00 0.00 42.01 4.01
45 46 7.713750 TCGTTTTGAATTATGTTGGTTTACCA 58.286 30.769 0.00 0.00 45.94 3.25
46 47 8.576936 TTCGTTTTGAATTATGTTGGTTTACC 57.423 30.769 0.00 0.00 0.00 2.85
49 50 8.608317 CCTTTTCGTTTTGAATTATGTTGGTTT 58.392 29.630 0.00 0.00 36.22 3.27
50 51 7.766738 ACCTTTTCGTTTTGAATTATGTTGGTT 59.233 29.630 0.00 0.00 36.22 3.67
51 52 7.269316 ACCTTTTCGTTTTGAATTATGTTGGT 58.731 30.769 0.00 0.00 36.22 3.67
52 53 7.707774 ACCTTTTCGTTTTGAATTATGTTGG 57.292 32.000 0.00 0.00 36.22 3.77
61 62 9.857957 ACAACTAATAAACCTTTTCGTTTTGAA 57.142 25.926 0.00 0.00 37.20 2.69
65 66 9.437045 CGTTACAACTAATAAACCTTTTCGTTT 57.563 29.630 0.00 0.00 39.28 3.60
66 67 8.069574 CCGTTACAACTAATAAACCTTTTCGTT 58.930 33.333 0.00 0.00 0.00 3.85
67 68 7.226523 ACCGTTACAACTAATAAACCTTTTCGT 59.773 33.333 0.00 0.00 0.00 3.85
68 69 7.575365 ACCGTTACAACTAATAAACCTTTTCG 58.425 34.615 0.00 0.00 0.00 3.46
69 70 9.734620 AAACCGTTACAACTAATAAACCTTTTC 57.265 29.630 0.00 0.00 0.00 2.29
74 75 9.393249 GGTTAAAACCGTTACAACTAATAAACC 57.607 33.333 0.00 0.00 39.66 3.27
91 92 7.893118 GCTTATGCATGACGGGGTTAAAACC 62.893 48.000 10.16 3.12 42.84 3.27
92 93 4.668289 CTTATGCATGACGGGGTTAAAAC 58.332 43.478 10.16 0.00 0.00 2.43
93 94 3.129638 GCTTATGCATGACGGGGTTAAAA 59.870 43.478 10.16 0.00 39.41 1.52
94 95 2.685897 GCTTATGCATGACGGGGTTAAA 59.314 45.455 10.16 0.00 39.41 1.52
95 96 2.294074 GCTTATGCATGACGGGGTTAA 58.706 47.619 10.16 0.00 39.41 2.01
96 97 1.210722 TGCTTATGCATGACGGGGTTA 59.789 47.619 10.16 0.00 45.31 2.85
97 98 0.034574 TGCTTATGCATGACGGGGTT 60.035 50.000 10.16 0.00 45.31 4.11
98 99 1.607071 TGCTTATGCATGACGGGGT 59.393 52.632 10.16 0.00 45.31 4.95
99 100 4.557554 TGCTTATGCATGACGGGG 57.442 55.556 10.16 0.00 45.31 5.73
115 116 0.035725 TCTCTGACCATGCAGCCTTG 60.036 55.000 0.00 0.00 35.86 3.61
116 117 0.035630 GTCTCTGACCATGCAGCCTT 60.036 55.000 0.00 0.00 35.86 4.35
117 118 1.196766 TGTCTCTGACCATGCAGCCT 61.197 55.000 0.00 0.00 35.86 4.58
118 119 1.023513 GTGTCTCTGACCATGCAGCC 61.024 60.000 0.00 0.00 35.86 4.85
119 120 1.023513 GGTGTCTCTGACCATGCAGC 61.024 60.000 0.00 0.00 35.86 5.25
120 121 0.612229 AGGTGTCTCTGACCATGCAG 59.388 55.000 0.00 0.00 35.76 4.41
121 122 0.610174 GAGGTGTCTCTGACCATGCA 59.390 55.000 0.00 0.00 37.07 3.96
122 123 3.450028 GAGGTGTCTCTGACCATGC 57.550 57.895 0.00 0.00 37.07 4.06
134 135 1.971357 CAGGACACTGGTTAGAGGTGT 59.029 52.381 0.00 0.00 45.26 4.16
135 136 2.028930 GTCAGGACACTGGTTAGAGGTG 60.029 54.545 0.00 0.00 44.99 4.00
136 137 2.249139 GTCAGGACACTGGTTAGAGGT 58.751 52.381 0.00 0.00 44.99 3.85
137 138 2.232452 CTGTCAGGACACTGGTTAGAGG 59.768 54.545 0.00 0.00 44.99 3.69
138 139 2.894126 ACTGTCAGGACACTGGTTAGAG 59.106 50.000 4.53 0.00 44.99 2.43
139 140 2.958818 ACTGTCAGGACACTGGTTAGA 58.041 47.619 4.53 0.00 44.99 2.10
140 141 4.281182 AGTTACTGTCAGGACACTGGTTAG 59.719 45.833 4.53 0.00 44.99 2.34
141 142 4.220724 AGTTACTGTCAGGACACTGGTTA 58.779 43.478 4.53 0.00 44.99 2.85
142 143 3.039011 AGTTACTGTCAGGACACTGGTT 58.961 45.455 4.53 0.00 44.99 3.67
143 144 2.679082 AGTTACTGTCAGGACACTGGT 58.321 47.619 4.53 0.00 44.99 4.00
144 145 3.827302 ACTAGTTACTGTCAGGACACTGG 59.173 47.826 4.53 7.34 44.99 4.00
145 146 5.938710 TCTACTAGTTACTGTCAGGACACTG 59.061 44.000 0.00 0.00 46.30 3.66
146 147 6.124316 TCTACTAGTTACTGTCAGGACACT 57.876 41.667 0.00 5.55 36.21 3.55
147 148 6.814506 TTCTACTAGTTACTGTCAGGACAC 57.185 41.667 0.00 0.00 36.21 3.67
148 149 8.418597 AATTTCTACTAGTTACTGTCAGGACA 57.581 34.615 0.00 1.70 39.32 4.02
149 150 9.708092 AAAATTTCTACTAGTTACTGTCAGGAC 57.292 33.333 0.00 2.78 0.00 3.85
160 161 9.011095 GCTTGGGAGTTAAAATTTCTACTAGTT 57.989 33.333 0.00 0.00 0.00 2.24
161 162 8.161425 TGCTTGGGAGTTAAAATTTCTACTAGT 58.839 33.333 0.00 0.00 0.00 2.57
162 163 8.561738 TGCTTGGGAGTTAAAATTTCTACTAG 57.438 34.615 5.43 0.00 0.00 2.57
163 164 7.610305 CCTGCTTGGGAGTTAAAATTTCTACTA 59.390 37.037 5.43 0.00 0.00 1.82
164 165 6.434340 CCTGCTTGGGAGTTAAAATTTCTACT 59.566 38.462 5.18 5.18 0.00 2.57
165 166 6.621613 CCTGCTTGGGAGTTAAAATTTCTAC 58.378 40.000 0.00 0.00 0.00 2.59
166 167 6.834168 CCTGCTTGGGAGTTAAAATTTCTA 57.166 37.500 0.00 0.00 0.00 2.10
167 168 5.728637 CCTGCTTGGGAGTTAAAATTTCT 57.271 39.130 0.00 0.00 0.00 2.52
181 182 3.471680 GATCTTAGTTAGCCCTGCTTGG 58.528 50.000 0.00 0.00 40.44 3.61
182 183 3.135530 AGGATCTTAGTTAGCCCTGCTTG 59.864 47.826 0.00 0.00 40.44 4.01
183 184 3.388913 AGGATCTTAGTTAGCCCTGCTT 58.611 45.455 0.00 0.00 40.44 3.91
184 185 3.053359 AGGATCTTAGTTAGCCCTGCT 57.947 47.619 0.00 0.00 43.41 4.24
185 186 4.081365 GGATAGGATCTTAGTTAGCCCTGC 60.081 50.000 0.00 0.00 31.76 4.85
186 187 5.087323 TGGATAGGATCTTAGTTAGCCCTG 58.913 45.833 0.00 0.00 31.76 4.45
187 188 5.355670 TGGATAGGATCTTAGTTAGCCCT 57.644 43.478 0.00 0.00 33.26 5.19
188 189 5.544562 AGTTGGATAGGATCTTAGTTAGCCC 59.455 44.000 0.00 0.00 0.00 5.19
189 190 6.673839 AGTTGGATAGGATCTTAGTTAGCC 57.326 41.667 0.00 0.00 0.00 3.93
190 191 9.478768 GTTAAGTTGGATAGGATCTTAGTTAGC 57.521 37.037 0.00 0.00 0.00 3.09
197 198 9.025041 CCTTTTTGTTAAGTTGGATAGGATCTT 57.975 33.333 0.00 0.00 0.00 2.40
198 199 7.615757 CCCTTTTTGTTAAGTTGGATAGGATCT 59.384 37.037 0.00 0.00 0.00 2.75
199 200 7.147897 CCCCTTTTTGTTAAGTTGGATAGGATC 60.148 40.741 0.00 0.00 0.00 3.36
200 201 6.667848 CCCCTTTTTGTTAAGTTGGATAGGAT 59.332 38.462 0.00 0.00 0.00 3.24
201 202 6.014012 CCCCTTTTTGTTAAGTTGGATAGGA 58.986 40.000 0.00 0.00 0.00 2.94
202 203 6.014012 TCCCCTTTTTGTTAAGTTGGATAGG 58.986 40.000 0.00 0.00 0.00 2.57
203 204 7.396055 TGATCCCCTTTTTGTTAAGTTGGATAG 59.604 37.037 0.00 0.00 36.13 2.08
204 205 7.242359 TGATCCCCTTTTTGTTAAGTTGGATA 58.758 34.615 0.00 0.00 36.13 2.59
205 206 6.081356 TGATCCCCTTTTTGTTAAGTTGGAT 58.919 36.000 0.00 0.00 37.48 3.41
206 207 5.459505 TGATCCCCTTTTTGTTAAGTTGGA 58.540 37.500 0.00 0.00 32.24 3.53
207 208 5.799827 TGATCCCCTTTTTGTTAAGTTGG 57.200 39.130 0.00 0.00 0.00 3.77
208 209 7.599998 CAGATTGATCCCCTTTTTGTTAAGTTG 59.400 37.037 0.00 0.00 0.00 3.16
209 210 7.256296 CCAGATTGATCCCCTTTTTGTTAAGTT 60.256 37.037 0.00 0.00 0.00 2.66
210 211 6.211384 CCAGATTGATCCCCTTTTTGTTAAGT 59.789 38.462 0.00 0.00 0.00 2.24
211 212 6.211384 ACCAGATTGATCCCCTTTTTGTTAAG 59.789 38.462 0.00 0.00 0.00 1.85
212 213 6.081356 ACCAGATTGATCCCCTTTTTGTTAA 58.919 36.000 0.00 0.00 0.00 2.01
213 214 5.650283 ACCAGATTGATCCCCTTTTTGTTA 58.350 37.500 0.00 0.00 0.00 2.41
214 215 4.492646 ACCAGATTGATCCCCTTTTTGTT 58.507 39.130 0.00 0.00 0.00 2.83
215 216 4.132122 ACCAGATTGATCCCCTTTTTGT 57.868 40.909 0.00 0.00 0.00 2.83
216 217 6.796785 ATAACCAGATTGATCCCCTTTTTG 57.203 37.500 0.00 0.00 0.00 2.44
217 218 6.096846 CGAATAACCAGATTGATCCCCTTTTT 59.903 38.462 0.00 0.00 0.00 1.94
218 219 5.594317 CGAATAACCAGATTGATCCCCTTTT 59.406 40.000 0.00 0.00 0.00 2.27
219 220 5.104109 TCGAATAACCAGATTGATCCCCTTT 60.104 40.000 0.00 0.00 0.00 3.11
220 221 4.412199 TCGAATAACCAGATTGATCCCCTT 59.588 41.667 0.00 0.00 0.00 3.95
221 222 3.973973 TCGAATAACCAGATTGATCCCCT 59.026 43.478 0.00 0.00 0.00 4.79
222 223 4.065789 GTCGAATAACCAGATTGATCCCC 58.934 47.826 0.00 0.00 0.00 4.81
223 224 4.065789 GGTCGAATAACCAGATTGATCCC 58.934 47.826 0.00 0.00 39.27 3.85
224 225 4.703897 TGGTCGAATAACCAGATTGATCC 58.296 43.478 0.00 0.00 44.40 3.36
234 235 6.249893 GCGAAATTTTACTTGGTCGAATAACC 59.750 38.462 0.00 0.00 39.94 2.85
235 236 6.249893 GGCGAAATTTTACTTGGTCGAATAAC 59.750 38.462 0.00 0.00 0.00 1.89
236 237 6.316319 GGCGAAATTTTACTTGGTCGAATAA 58.684 36.000 0.00 0.00 0.00 1.40
237 238 5.163733 GGGCGAAATTTTACTTGGTCGAATA 60.164 40.000 0.00 0.00 0.00 1.75
238 239 4.380128 GGGCGAAATTTTACTTGGTCGAAT 60.380 41.667 0.00 0.00 0.00 3.34
239 240 3.058085 GGGCGAAATTTTACTTGGTCGAA 60.058 43.478 0.00 0.00 0.00 3.71
240 241 2.485038 GGGCGAAATTTTACTTGGTCGA 59.515 45.455 0.00 0.00 0.00 4.20
241 242 2.726681 CGGGCGAAATTTTACTTGGTCG 60.727 50.000 0.00 0.00 0.00 4.79
242 243 2.414957 CCGGGCGAAATTTTACTTGGTC 60.415 50.000 0.00 0.00 0.00 4.02
243 244 1.542472 CCGGGCGAAATTTTACTTGGT 59.458 47.619 0.00 0.00 0.00 3.67
244 245 1.813786 TCCGGGCGAAATTTTACTTGG 59.186 47.619 0.00 0.00 0.00 3.61
245 246 3.562567 TTCCGGGCGAAATTTTACTTG 57.437 42.857 0.00 0.00 0.00 3.16
246 247 3.613193 GCTTTCCGGGCGAAATTTTACTT 60.613 43.478 0.00 0.00 39.73 2.24
247 248 2.094906 GCTTTCCGGGCGAAATTTTACT 60.095 45.455 0.00 0.00 39.73 2.24
248 249 2.094906 AGCTTTCCGGGCGAAATTTTAC 60.095 45.455 0.00 0.00 39.73 2.01
249 250 2.162809 GAGCTTTCCGGGCGAAATTTTA 59.837 45.455 0.00 0.00 39.73 1.52
250 251 0.966179 AGCTTTCCGGGCGAAATTTT 59.034 45.000 0.00 0.00 39.73 1.82
251 252 0.526211 GAGCTTTCCGGGCGAAATTT 59.474 50.000 0.00 0.00 39.73 1.82
252 253 0.608035 TGAGCTTTCCGGGCGAAATT 60.608 50.000 0.00 0.00 39.73 1.82
253 254 0.608035 TTGAGCTTTCCGGGCGAAAT 60.608 50.000 0.00 0.00 39.73 2.17
254 255 1.228003 TTGAGCTTTCCGGGCGAAA 60.228 52.632 0.00 0.00 38.16 3.46
255 256 1.671054 CTTGAGCTTTCCGGGCGAA 60.671 57.895 0.00 0.00 34.52 4.70
256 257 2.047274 CTTGAGCTTTCCGGGCGA 60.047 61.111 0.00 0.00 34.52 5.54
257 258 3.804193 GCTTGAGCTTTCCGGGCG 61.804 66.667 0.00 0.00 38.21 6.13
258 259 2.048603 ATGCTTGAGCTTTCCGGGC 61.049 57.895 0.00 0.00 42.66 6.13
259 260 1.660560 CCATGCTTGAGCTTTCCGGG 61.661 60.000 0.00 0.00 42.66 5.73
260 261 0.677731 TCCATGCTTGAGCTTTCCGG 60.678 55.000 0.00 0.00 42.66 5.14
261 262 0.449388 GTCCATGCTTGAGCTTTCCG 59.551 55.000 4.44 0.00 42.66 4.30
262 263 0.813821 GGTCCATGCTTGAGCTTTCC 59.186 55.000 4.44 0.00 42.66 3.13
263 264 1.471684 CAGGTCCATGCTTGAGCTTTC 59.528 52.381 4.44 0.00 38.45 2.62
264 265 1.542492 CAGGTCCATGCTTGAGCTTT 58.458 50.000 4.44 0.00 38.45 3.51
265 266 0.323178 CCAGGTCCATGCTTGAGCTT 60.323 55.000 4.44 0.00 38.45 3.74
266 267 1.302285 CCAGGTCCATGCTTGAGCT 59.698 57.895 4.44 0.00 41.00 4.09
267 268 0.610232 AACCAGGTCCATGCTTGAGC 60.610 55.000 0.22 0.00 42.50 4.26
268 269 1.915141 AAACCAGGTCCATGCTTGAG 58.085 50.000 0.22 0.00 0.00 3.02
269 270 2.107378 TGTAAACCAGGTCCATGCTTGA 59.893 45.455 0.22 0.00 0.00 3.02
270 271 2.513753 TGTAAACCAGGTCCATGCTTG 58.486 47.619 0.00 0.00 0.00 4.01
271 272 2.969821 TGTAAACCAGGTCCATGCTT 57.030 45.000 0.00 0.00 0.00 3.91
272 273 2.969821 TTGTAAACCAGGTCCATGCT 57.030 45.000 0.00 0.00 0.00 3.79
340 341 3.118738 ACGTATTCATCCAAGTCACTCCC 60.119 47.826 0.00 0.00 0.00 4.30
341 342 4.124851 ACGTATTCATCCAAGTCACTCC 57.875 45.455 0.00 0.00 0.00 3.85
345 346 4.545208 TCCAACGTATTCATCCAAGTCA 57.455 40.909 0.00 0.00 0.00 3.41
350 351 4.006989 CCAAGTTCCAACGTATTCATCCA 58.993 43.478 0.00 0.00 0.00 3.41
362 379 2.318908 AGCAGCATTTCCAAGTTCCAA 58.681 42.857 0.00 0.00 0.00 3.53
363 380 1.999648 AGCAGCATTTCCAAGTTCCA 58.000 45.000 0.00 0.00 0.00 3.53
364 381 2.159324 GCTAGCAGCATTTCCAAGTTCC 60.159 50.000 10.63 0.00 41.89 3.62
365 382 2.159324 GGCTAGCAGCATTTCCAAGTTC 60.159 50.000 18.24 0.00 44.75 3.01
366 383 1.821136 GGCTAGCAGCATTTCCAAGTT 59.179 47.619 18.24 0.00 44.75 2.66
367 384 1.467920 GGCTAGCAGCATTTCCAAGT 58.532 50.000 18.24 0.00 44.75 3.16
368 385 0.379669 CGGCTAGCAGCATTTCCAAG 59.620 55.000 18.24 0.00 44.75 3.61
433 450 1.257743 TCTGGTTTCTCTCGGTCCAG 58.742 55.000 0.00 0.00 44.69 3.86
443 460 2.224281 TGATGACGCACTTCTGGTTTCT 60.224 45.455 0.00 0.00 0.00 2.52
444 461 2.143122 TGATGACGCACTTCTGGTTTC 58.857 47.619 0.00 0.00 0.00 2.78
445 462 2.254546 TGATGACGCACTTCTGGTTT 57.745 45.000 0.00 0.00 0.00 3.27
488 508 2.484264 GTGGTGGTTAGCTGTCAATGAC 59.516 50.000 6.41 6.41 0.00 3.06
557 577 1.712977 GCTTCAATGCTGGCCGAGAG 61.713 60.000 0.00 0.00 0.00 3.20
558 578 1.746615 GCTTCAATGCTGGCCGAGA 60.747 57.895 0.00 0.00 0.00 4.04
566 586 0.251033 TCCTGCACAGCTTCAATGCT 60.251 50.000 9.65 0.00 45.18 3.79
605 625 0.737367 ATGTGCATGTGACCGTCTCG 60.737 55.000 0.00 0.00 0.00 4.04
609 629 0.516877 CGAAATGTGCATGTGACCGT 59.483 50.000 0.00 0.00 0.00 4.83
646 666 0.325602 TTATTTATAGGCCCGCCCCG 59.674 55.000 0.00 0.00 36.58 5.73
694 718 3.070018 GAGTGAGGATGAACTTGTGGTG 58.930 50.000 0.00 0.00 0.00 4.17
695 719 2.289072 CGAGTGAGGATGAACTTGTGGT 60.289 50.000 0.00 0.00 0.00 4.16
696 720 2.029020 TCGAGTGAGGATGAACTTGTGG 60.029 50.000 0.00 0.00 0.00 4.17
697 721 3.249091 CTCGAGTGAGGATGAACTTGTG 58.751 50.000 3.62 0.00 38.65 3.33
762 786 0.534203 GGAAGGCACGGACAGACAAA 60.534 55.000 0.00 0.00 0.00 2.83
779 803 1.002403 TACTTGGGCCTGGATCGGA 59.998 57.895 4.53 0.00 0.00 4.55
780 804 1.146263 GTACTTGGGCCTGGATCGG 59.854 63.158 4.53 0.00 0.00 4.18
781 805 0.179073 CAGTACTTGGGCCTGGATCG 60.179 60.000 4.53 0.00 0.00 3.69
782 806 0.464554 GCAGTACTTGGGCCTGGATC 60.465 60.000 4.53 0.00 0.00 3.36
783 807 1.609783 GCAGTACTTGGGCCTGGAT 59.390 57.895 4.53 0.00 0.00 3.41
867 912 7.960195 GCTAGAAGCACTAAAGATTCAAGAAAC 59.040 37.037 0.00 0.00 41.89 2.78
881 926 7.611770 TGATTTAGAAACAGCTAGAAGCACTA 58.388 34.615 1.22 0.00 45.56 2.74
888 933 5.699001 TGCGTTTGATTTAGAAACAGCTAGA 59.301 36.000 0.00 0.00 35.63 2.43
913 966 7.178274 AGACCAAAACATATTCCAACTAATGCA 59.822 33.333 0.00 0.00 0.00 3.96
920 974 6.575162 ACTCAGACCAAAACATATTCCAAC 57.425 37.500 0.00 0.00 0.00 3.77
948 1005 6.363626 CACATCCATCGATAGCAAGTTAGTAC 59.636 42.308 0.00 0.00 0.00 2.73
949 1006 6.264518 TCACATCCATCGATAGCAAGTTAGTA 59.735 38.462 0.00 0.00 0.00 1.82
950 1007 5.069119 TCACATCCATCGATAGCAAGTTAGT 59.931 40.000 0.00 0.00 0.00 2.24
1353 1626 4.736611 ACCATCCATGCCATCTCTAATT 57.263 40.909 0.00 0.00 0.00 1.40
1361 1634 4.255510 AGAACTAAACCATCCATGCCAT 57.744 40.909 0.00 0.00 0.00 4.40
1424 1697 6.149633 CCGCAACAAGAAAAATATATAGCCC 58.850 40.000 0.00 0.00 0.00 5.19
1425 1698 6.636850 CACCGCAACAAGAAAAATATATAGCC 59.363 38.462 0.00 0.00 0.00 3.93
1426 1699 7.165812 CACACCGCAACAAGAAAAATATATAGC 59.834 37.037 0.00 0.00 0.00 2.97
1427 1700 8.394877 TCACACCGCAACAAGAAAAATATATAG 58.605 33.333 0.00 0.00 0.00 1.31
1429 1702 7.151999 TCACACCGCAACAAGAAAAATATAT 57.848 32.000 0.00 0.00 0.00 0.86
1430 1703 6.561737 TCACACCGCAACAAGAAAAATATA 57.438 33.333 0.00 0.00 0.00 0.86
1431 1704 5.446143 TCACACCGCAACAAGAAAAATAT 57.554 34.783 0.00 0.00 0.00 1.28
1432 1705 4.902443 TCACACCGCAACAAGAAAAATA 57.098 36.364 0.00 0.00 0.00 1.40
1433 1706 3.791973 TCACACCGCAACAAGAAAAAT 57.208 38.095 0.00 0.00 0.00 1.82
1471 1758 0.953727 TGCAGATTTTCGCAAGCACT 59.046 45.000 0.00 0.00 34.59 4.40
1474 1761 2.056094 AACTGCAGATTTTCGCAAGC 57.944 45.000 23.35 0.00 37.76 4.01
1476 1763 3.971871 CGTTAAACTGCAGATTTTCGCAA 59.028 39.130 23.35 2.52 37.76 4.85
1478 1765 3.357823 CACGTTAAACTGCAGATTTTCGC 59.642 43.478 23.35 7.02 0.00 4.70
1479 1766 4.768145 TCACGTTAAACTGCAGATTTTCG 58.232 39.130 23.35 22.18 0.00 3.46
1518 1853 2.419324 ACGCCGTGTTTGTAAAAAGACA 59.581 40.909 6.49 0.00 0.00 3.41
1519 1854 2.779471 CACGCCGTGTTTGTAAAAAGAC 59.221 45.455 9.53 0.00 0.00 3.01
1522 1857 3.181499 ACATCACGCCGTGTTTGTAAAAA 60.181 39.130 20.91 0.06 32.62 1.94
1540 1875 3.382546 ACCTGAGCCATTGCATAAACATC 59.617 43.478 0.00 0.00 41.13 3.06
1555 1890 1.795286 CTGAAACGTCTTCACCTGAGC 59.205 52.381 8.47 0.00 0.00 4.26
1557 1892 1.138069 TGCTGAAACGTCTTCACCTGA 59.862 47.619 8.47 0.00 0.00 3.86
1566 1903 0.235926 GCCTCACTTGCTGAAACGTC 59.764 55.000 0.00 0.00 0.00 4.34
1567 1904 0.179045 AGCCTCACTTGCTGAAACGT 60.179 50.000 0.00 0.00 37.76 3.99
1575 1912 0.957888 GGTCAAGGAGCCTCACTTGC 60.958 60.000 14.48 10.87 42.82 4.01
1594 1931 3.318017 CCTAGCCTATTTCGGTGATTCG 58.682 50.000 0.00 0.00 0.00 3.34
1597 1934 2.300437 GAGCCTAGCCTATTTCGGTGAT 59.700 50.000 0.00 0.00 0.00 3.06
1598 1935 1.687123 GAGCCTAGCCTATTTCGGTGA 59.313 52.381 0.00 0.00 0.00 4.02
1599 1936 1.270358 GGAGCCTAGCCTATTTCGGTG 60.270 57.143 0.00 0.00 0.00 4.94
1600 1937 1.049402 GGAGCCTAGCCTATTTCGGT 58.951 55.000 0.00 0.00 0.00 4.69
1601 1938 1.343069 AGGAGCCTAGCCTATTTCGG 58.657 55.000 0.00 0.00 32.92 4.30
1602 1939 2.365617 TCAAGGAGCCTAGCCTATTTCG 59.634 50.000 0.00 0.00 33.76 3.46
1603 1940 3.389656 AGTCAAGGAGCCTAGCCTATTTC 59.610 47.826 0.00 0.00 33.76 2.17
1604 1941 3.135530 CAGTCAAGGAGCCTAGCCTATTT 59.864 47.826 0.00 0.00 33.76 1.40
1605 1942 2.703007 CAGTCAAGGAGCCTAGCCTATT 59.297 50.000 0.00 0.00 33.76 1.73
1606 1943 2.091055 TCAGTCAAGGAGCCTAGCCTAT 60.091 50.000 0.00 0.00 33.76 2.57
1607 1944 1.288037 TCAGTCAAGGAGCCTAGCCTA 59.712 52.381 0.00 0.00 33.76 3.93
1608 1945 0.041833 TCAGTCAAGGAGCCTAGCCT 59.958 55.000 0.00 0.00 37.35 4.58
1609 1946 1.127343 ATCAGTCAAGGAGCCTAGCC 58.873 55.000 0.00 0.00 0.00 3.93
1610 1947 2.998316 AATCAGTCAAGGAGCCTAGC 57.002 50.000 0.00 0.00 0.00 3.42
1649 1987 5.424757 GTTGTGTGCATCCTGGTAGTAATA 58.575 41.667 0.00 0.00 0.00 0.98
1650 1988 4.261801 GTTGTGTGCATCCTGGTAGTAAT 58.738 43.478 0.00 0.00 0.00 1.89
1652 1990 2.027561 GGTTGTGTGCATCCTGGTAGTA 60.028 50.000 0.00 0.00 32.94 1.82
1653 1991 1.271379 GGTTGTGTGCATCCTGGTAGT 60.271 52.381 0.00 0.00 32.94 2.73
1656 1994 0.112995 ATGGTTGTGTGCATCCTGGT 59.887 50.000 0.00 0.00 35.89 4.00
1657 1995 1.203052 GAATGGTTGTGTGCATCCTGG 59.797 52.381 0.00 0.00 35.89 4.45
1678 2020 7.591426 GCAAACTCAAAACCTATTTCAGTACAG 59.409 37.037 0.00 0.00 0.00 2.74
1680 2022 7.591426 CAGCAAACTCAAAACCTATTTCAGTAC 59.409 37.037 0.00 0.00 0.00 2.73
1681 2023 7.255451 CCAGCAAACTCAAAACCTATTTCAGTA 60.255 37.037 0.00 0.00 0.00 2.74
1695 2037 7.523293 TTGAAGAAATATCCAGCAAACTCAA 57.477 32.000 0.00 0.00 0.00 3.02
1696 2038 7.394077 TGATTGAAGAAATATCCAGCAAACTCA 59.606 33.333 0.00 0.00 0.00 3.41
1713 2055 5.545063 TTGTAGTGTGGTCTGATTGAAGA 57.455 39.130 0.00 0.00 0.00 2.87
1810 2152 9.644993 GTTGCAAGAAAAACAAACAATATAACC 57.355 29.630 0.00 0.00 0.00 2.85
1848 2195 8.107095 GGAAAGCCAGGAAATATATACCACATA 58.893 37.037 10.27 0.00 0.00 2.29
1861 2208 0.404040 ATCACCGGAAAGCCAGGAAA 59.596 50.000 9.46 0.00 33.71 3.13
1876 2223 9.494271 TCATATTCATTTCCTGCTTACTATCAC 57.506 33.333 0.00 0.00 0.00 3.06
1918 2266 4.155709 TCCACCCTAGAGATCATGATCAC 58.844 47.826 31.99 26.76 40.22 3.06
1933 2281 2.776526 TTGTGCCACCTCCACCCT 60.777 61.111 0.00 0.00 32.30 4.34
1941 2289 2.677003 CCGATCGTGTTGTGCCACC 61.677 63.158 15.09 0.00 31.47 4.61
1971 2319 4.614946 GCTACCTCCATTGCAATTCAATC 58.385 43.478 9.83 0.00 43.21 2.67
2115 2463 8.755941 GCAGAAAAGAAAAGGAAAAACATACTC 58.244 33.333 0.00 0.00 0.00 2.59
2116 2464 8.257306 TGCAGAAAAGAAAAGGAAAAACATACT 58.743 29.630 0.00 0.00 0.00 2.12
2117 2465 8.419076 TGCAGAAAAGAAAAGGAAAAACATAC 57.581 30.769 0.00 0.00 0.00 2.39
2125 2475 2.543653 GCGCTGCAGAAAAGAAAAGGAA 60.544 45.455 20.43 0.00 0.00 3.36
2126 2476 1.001378 GCGCTGCAGAAAAGAAAAGGA 60.001 47.619 20.43 0.00 0.00 3.36
2155 2505 1.067142 GGCGGAATGTGTCACTCTGTA 60.067 52.381 4.27 0.00 0.00 2.74
2157 2507 1.354337 CGGCGGAATGTGTCACTCTG 61.354 60.000 0.00 0.74 0.00 3.35
2158 2508 1.079819 CGGCGGAATGTGTCACTCT 60.080 57.895 0.00 0.00 0.00 3.24
2180 2530 0.037975 AAAGCCTGGCATTGCGAAAG 60.038 50.000 22.65 0.36 0.00 2.62
2185 2535 0.319405 ACTGAAAAGCCTGGCATTGC 59.681 50.000 22.65 14.92 0.00 3.56
2215 2568 8.969267 CCTTTCTCGCACTAATACAATTACTAG 58.031 37.037 0.00 0.00 0.00 2.57
2216 2569 8.472413 ACCTTTCTCGCACTAATACAATTACTA 58.528 33.333 0.00 0.00 0.00 1.82
2217 2570 7.328737 ACCTTTCTCGCACTAATACAATTACT 58.671 34.615 0.00 0.00 0.00 2.24
2218 2571 7.535489 ACCTTTCTCGCACTAATACAATTAC 57.465 36.000 0.00 0.00 0.00 1.89
2219 2572 8.447833 CAAACCTTTCTCGCACTAATACAATTA 58.552 33.333 0.00 0.00 0.00 1.40
2220 2573 7.305474 CAAACCTTTCTCGCACTAATACAATT 58.695 34.615 0.00 0.00 0.00 2.32
2221 2574 6.128007 CCAAACCTTTCTCGCACTAATACAAT 60.128 38.462 0.00 0.00 0.00 2.71
2222 2575 5.180492 CCAAACCTTTCTCGCACTAATACAA 59.820 40.000 0.00 0.00 0.00 2.41
2223 2576 4.693566 CCAAACCTTTCTCGCACTAATACA 59.306 41.667 0.00 0.00 0.00 2.29
2224 2577 4.933400 TCCAAACCTTTCTCGCACTAATAC 59.067 41.667 0.00 0.00 0.00 1.89
2225 2578 5.155278 TCCAAACCTTTCTCGCACTAATA 57.845 39.130 0.00 0.00 0.00 0.98
2226 2579 4.015872 TCCAAACCTTTCTCGCACTAAT 57.984 40.909 0.00 0.00 0.00 1.73
2227 2580 3.478857 TCCAAACCTTTCTCGCACTAA 57.521 42.857 0.00 0.00 0.00 2.24
2228 2581 3.695830 ATCCAAACCTTTCTCGCACTA 57.304 42.857 0.00 0.00 0.00 2.74
2229 2582 2.568623 ATCCAAACCTTTCTCGCACT 57.431 45.000 0.00 0.00 0.00 4.40
2230 2583 3.335579 AGTATCCAAACCTTTCTCGCAC 58.664 45.455 0.00 0.00 0.00 5.34
2231 2584 3.695830 AGTATCCAAACCTTTCTCGCA 57.304 42.857 0.00 0.00 0.00 5.10
2232 2585 4.756502 ACTAGTATCCAAACCTTTCTCGC 58.243 43.478 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.