Multiple sequence alignment - TraesCS6B01G408400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G408400 chr6B 100.000 2240 0 0 1 2240 682587582 682589821 0.000000e+00 4137.0
1 TraesCS6B01G408400 chr6B 77.948 1043 79 69 427 1357 682655624 682656627 1.530000e-141 512.0
2 TraesCS6B01G408400 chr6B 80.612 196 29 5 2 190 84603196 84603389 2.320000e-30 143.0
3 TraesCS6B01G408400 chr6D 87.436 1361 93 39 217 1550 450136132 450137441 0.000000e+00 1495.0
4 TraesCS6B01G408400 chr6D 81.339 1120 80 58 279 1323 450164318 450165383 0.000000e+00 791.0
5 TraesCS6B01G408400 chr6D 80.383 678 69 29 1578 2235 450137438 450138071 7.290000e-125 457.0
6 TraesCS6B01G408400 chr6A 81.818 1782 146 93 295 1979 595647709 595649409 0.000000e+00 1332.0
7 TraesCS6B01G408400 chr6A 80.568 1091 89 52 295 1320 595658357 595659389 0.000000e+00 726.0
8 TraesCS6B01G408400 chr6A 85.385 260 31 5 1981 2240 595649447 595649699 1.710000e-66 263.0
9 TraesCS6B01G408400 chr7A 82.888 187 25 5 9 190 174590381 174590197 6.400000e-36 161.0
10 TraesCS6B01G408400 chr7A 85.714 91 6 3 1770 1855 94834461 94834549 3.060000e-14 89.8
11 TraesCS6B01G408400 chr1D 82.353 187 28 2 9 190 461003268 461003082 8.280000e-35 158.0
12 TraesCS6B01G408400 chr1D 79.899 199 27 9 1 190 342495035 342495229 1.400000e-27 134.0
13 TraesCS6B01G408400 chr4D 81.250 192 29 4 5 190 51456617 51456427 4.980000e-32 148.0
14 TraesCS6B01G408400 chr5A 80.513 195 32 3 1 190 644116326 644116133 6.450000e-31 145.0
15 TraesCS6B01G408400 chr5A 85.870 92 5 4 1768 1855 322888525 322888612 8.520000e-15 91.6
16 TraesCS6B01G408400 chr3D 80.203 197 30 5 1 190 463681798 463681604 3.000000e-29 139.0
17 TraesCS6B01G408400 chr3B 80.000 195 34 2 1 190 749488923 749488729 3.000000e-29 139.0
18 TraesCS6B01G408400 chr3B 85.870 92 5 4 1768 1855 10620106 10620019 8.520000e-15 91.6
19 TraesCS6B01G408400 chr2B 81.081 185 25 6 1 178 363773474 363773655 3.000000e-29 139.0
20 TraesCS6B01G408400 chr2B 85.870 92 5 4 1768 1855 8560854 8560767 8.520000e-15 91.6
21 TraesCS6B01G408400 chr2A 86.957 92 5 6 1768 1855 448575866 448575778 1.830000e-16 97.1
22 TraesCS6B01G408400 chr2D 86.813 91 5 6 1768 1855 338699247 338699161 6.590000e-16 95.3
23 TraesCS6B01G408400 chr7B 85.714 91 5 4 1769 1855 64175540 64175626 3.060000e-14 89.8
24 TraesCS6B01G408400 chr7B 85.714 91 5 4 1769 1855 706855401 706855487 3.060000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G408400 chr6B 682587582 682589821 2239 False 4137.0 4137 100.0000 1 2240 1 chr6B.!!$F2 2239
1 TraesCS6B01G408400 chr6B 682655624 682656627 1003 False 512.0 512 77.9480 427 1357 1 chr6B.!!$F3 930
2 TraesCS6B01G408400 chr6D 450136132 450138071 1939 False 976.0 1495 83.9095 217 2235 2 chr6D.!!$F2 2018
3 TraesCS6B01G408400 chr6D 450164318 450165383 1065 False 791.0 791 81.3390 279 1323 1 chr6D.!!$F1 1044
4 TraesCS6B01G408400 chr6A 595647709 595649699 1990 False 797.5 1332 83.6015 295 2240 2 chr6A.!!$F2 1945
5 TraesCS6B01G408400 chr6A 595658357 595659389 1032 False 726.0 726 80.5680 295 1320 1 chr6A.!!$F1 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.032515 TAAGGGAGCGGTGATGAGGA 60.033 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2304 0.029567 GCGGTCGGAGTGTGAGATAG 59.97 60.0 0.0 0.0 0.0 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.969828 GGATTGGATCCTTTCGATGTATAC 57.030 41.667 14.23 0.00 46.19 1.47
29 30 6.702329 GGATTGGATCCTTTCGATGTATACT 58.298 40.000 14.23 0.00 46.19 2.12
30 31 7.162082 GGATTGGATCCTTTCGATGTATACTT 58.838 38.462 14.23 0.00 46.19 2.24
31 32 7.332182 GGATTGGATCCTTTCGATGTATACTTC 59.668 40.741 14.23 6.56 46.19 3.01
32 33 6.978674 TGGATCCTTTCGATGTATACTTCT 57.021 37.500 14.23 0.00 0.00 2.85
33 34 6.982852 TGGATCCTTTCGATGTATACTTCTC 58.017 40.000 14.23 5.63 0.00 2.87
34 35 6.778069 TGGATCCTTTCGATGTATACTTCTCT 59.222 38.462 14.23 0.00 0.00 3.10
35 36 7.287927 TGGATCCTTTCGATGTATACTTCTCTT 59.712 37.037 14.23 0.00 0.00 2.85
36 37 7.810759 GGATCCTTTCGATGTATACTTCTCTTC 59.189 40.741 3.84 4.64 0.00 2.87
37 38 7.883391 TCCTTTCGATGTATACTTCTCTTCT 57.117 36.000 14.75 0.00 0.00 2.85
38 39 8.294954 TCCTTTCGATGTATACTTCTCTTCTT 57.705 34.615 14.75 0.00 0.00 2.52
39 40 8.407064 TCCTTTCGATGTATACTTCTCTTCTTC 58.593 37.037 14.75 0.00 0.00 2.87
40 41 7.377397 CCTTTCGATGTATACTTCTCTTCTTCG 59.623 40.741 14.75 2.65 0.00 3.79
41 42 6.301687 TCGATGTATACTTCTCTTCTTCGG 57.698 41.667 14.75 0.00 0.00 4.30
42 43 4.912766 CGATGTATACTTCTCTTCTTCGGC 59.087 45.833 14.75 0.00 0.00 5.54
43 44 4.288670 TGTATACTTCTCTTCTTCGGCG 57.711 45.455 0.00 0.00 0.00 6.46
44 45 3.943381 TGTATACTTCTCTTCTTCGGCGA 59.057 43.478 4.99 4.99 0.00 5.54
45 46 2.915738 TACTTCTCTTCTTCGGCGAC 57.084 50.000 10.16 0.00 0.00 5.19
46 47 1.249407 ACTTCTCTTCTTCGGCGACT 58.751 50.000 10.16 0.00 0.00 4.18
47 48 1.068194 ACTTCTCTTCTTCGGCGACTG 60.068 52.381 10.16 5.84 0.00 3.51
48 49 0.959553 TTCTCTTCTTCGGCGACTGT 59.040 50.000 10.16 0.00 0.00 3.55
49 50 0.959553 TCTCTTCTTCGGCGACTGTT 59.040 50.000 10.16 0.00 0.00 3.16
50 51 1.063806 CTCTTCTTCGGCGACTGTTG 58.936 55.000 10.16 0.00 0.00 3.33
51 52 0.944311 TCTTCTTCGGCGACTGTTGC 60.944 55.000 10.16 11.66 0.00 4.17
52 53 0.946221 CTTCTTCGGCGACTGTTGCT 60.946 55.000 18.86 0.00 0.00 3.91
53 54 0.315886 TTCTTCGGCGACTGTTGCTA 59.684 50.000 18.86 5.83 0.00 3.49
54 55 0.530744 TCTTCGGCGACTGTTGCTAT 59.469 50.000 18.86 0.00 0.00 2.97
55 56 1.067142 TCTTCGGCGACTGTTGCTATT 60.067 47.619 18.86 0.00 0.00 1.73
56 57 1.732259 CTTCGGCGACTGTTGCTATTT 59.268 47.619 18.86 0.00 0.00 1.40
57 58 1.803334 TCGGCGACTGTTGCTATTTT 58.197 45.000 18.86 0.00 0.00 1.82
58 59 2.962125 TCGGCGACTGTTGCTATTTTA 58.038 42.857 18.86 0.00 0.00 1.52
59 60 2.927477 TCGGCGACTGTTGCTATTTTAG 59.073 45.455 18.86 3.75 0.00 1.85
60 61 2.671396 CGGCGACTGTTGCTATTTTAGT 59.329 45.455 18.86 0.00 0.00 2.24
61 62 3.483574 CGGCGACTGTTGCTATTTTAGTG 60.484 47.826 18.86 0.00 0.00 2.74
62 63 3.417185 GCGACTGTTGCTATTTTAGTGC 58.583 45.455 12.78 0.00 0.00 4.40
63 64 3.120338 GCGACTGTTGCTATTTTAGTGCA 60.120 43.478 12.78 0.00 34.69 4.57
64 65 4.394795 CGACTGTTGCTATTTTAGTGCAC 58.605 43.478 9.40 9.40 36.37 4.57
65 66 4.152402 CGACTGTTGCTATTTTAGTGCACT 59.848 41.667 25.12 25.12 36.37 4.40
66 67 5.362556 ACTGTTGCTATTTTAGTGCACTG 57.637 39.130 29.57 12.36 36.37 3.66
67 68 4.216257 ACTGTTGCTATTTTAGTGCACTGG 59.784 41.667 29.57 12.36 36.37 4.00
68 69 4.141287 TGTTGCTATTTTAGTGCACTGGT 58.859 39.130 29.57 13.94 36.37 4.00
69 70 4.215399 TGTTGCTATTTTAGTGCACTGGTC 59.785 41.667 29.57 11.08 36.37 4.02
70 71 3.343617 TGCTATTTTAGTGCACTGGTCC 58.656 45.455 29.57 10.95 0.00 4.46
71 72 2.351726 GCTATTTTAGTGCACTGGTCCG 59.648 50.000 29.57 13.49 0.00 4.79
72 73 1.821216 ATTTTAGTGCACTGGTCCGG 58.179 50.000 29.57 0.00 0.00 5.14
73 74 0.470766 TTTTAGTGCACTGGTCCGGT 59.529 50.000 29.57 0.00 0.00 5.28
74 75 0.470766 TTTAGTGCACTGGTCCGGTT 59.529 50.000 29.57 1.79 0.00 4.44
75 76 0.034337 TTAGTGCACTGGTCCGGTTC 59.966 55.000 29.57 0.00 0.00 3.62
76 77 0.830444 TAGTGCACTGGTCCGGTTCT 60.830 55.000 29.57 0.40 0.00 3.01
77 78 1.227853 GTGCACTGGTCCGGTTCTT 60.228 57.895 10.32 0.00 0.00 2.52
78 79 0.034337 GTGCACTGGTCCGGTTCTTA 59.966 55.000 10.32 0.00 0.00 2.10
79 80 0.320374 TGCACTGGTCCGGTTCTTAG 59.680 55.000 0.00 2.57 0.00 2.18
80 81 1.019805 GCACTGGTCCGGTTCTTAGC 61.020 60.000 0.00 0.00 0.00 3.09
81 82 0.320374 CACTGGTCCGGTTCTTAGCA 59.680 55.000 0.00 0.00 0.00 3.49
82 83 0.320697 ACTGGTCCGGTTCTTAGCAC 59.679 55.000 0.00 0.00 0.00 4.40
83 84 0.736325 CTGGTCCGGTTCTTAGCACG 60.736 60.000 0.00 0.00 0.00 5.34
84 85 1.180456 TGGTCCGGTTCTTAGCACGA 61.180 55.000 0.00 0.00 0.00 4.35
85 86 0.735287 GGTCCGGTTCTTAGCACGAC 60.735 60.000 0.00 0.00 0.00 4.34
86 87 1.069378 GTCCGGTTCTTAGCACGACG 61.069 60.000 0.00 0.00 0.00 5.12
87 88 1.210931 CCGGTTCTTAGCACGACGA 59.789 57.895 0.00 0.00 0.00 4.20
88 89 1.069378 CCGGTTCTTAGCACGACGAC 61.069 60.000 0.00 0.00 0.00 4.34
89 90 0.109873 CGGTTCTTAGCACGACGACT 60.110 55.000 0.00 0.59 0.00 4.18
90 91 1.665161 CGGTTCTTAGCACGACGACTT 60.665 52.381 0.00 0.00 0.00 3.01
91 92 2.401351 GGTTCTTAGCACGACGACTTT 58.599 47.619 0.00 0.00 0.00 2.66
92 93 2.407696 GGTTCTTAGCACGACGACTTTC 59.592 50.000 0.00 0.00 0.00 2.62
93 94 2.342910 TCTTAGCACGACGACTTTCC 57.657 50.000 0.00 0.00 0.00 3.13
94 95 0.982673 CTTAGCACGACGACTTTCCG 59.017 55.000 0.00 0.00 0.00 4.30
95 96 0.592637 TTAGCACGACGACTTTCCGA 59.407 50.000 0.00 0.00 0.00 4.55
96 97 0.110056 TAGCACGACGACTTTCCGAC 60.110 55.000 0.00 0.00 0.00 4.79
97 98 1.371389 GCACGACGACTTTCCGACT 60.371 57.895 0.00 0.00 0.00 4.18
98 99 1.606350 GCACGACGACTTTCCGACTG 61.606 60.000 0.00 0.00 0.00 3.51
99 100 0.317603 CACGACGACTTTCCGACTGT 60.318 55.000 0.00 0.00 0.00 3.55
100 101 0.040603 ACGACGACTTTCCGACTGTC 60.041 55.000 0.00 0.00 0.00 3.51
101 102 0.237761 CGACGACTTTCCGACTGTCT 59.762 55.000 6.21 0.00 0.00 3.41
102 103 1.462283 CGACGACTTTCCGACTGTCTA 59.538 52.381 6.21 0.00 0.00 2.59
103 104 2.724228 CGACGACTTTCCGACTGTCTAC 60.724 54.545 6.21 0.00 0.00 2.59
104 105 2.483491 GACGACTTTCCGACTGTCTACT 59.517 50.000 6.21 0.00 0.00 2.57
105 106 3.668447 ACGACTTTCCGACTGTCTACTA 58.332 45.455 6.21 0.00 0.00 1.82
106 107 3.434984 ACGACTTTCCGACTGTCTACTAC 59.565 47.826 6.21 0.00 0.00 2.73
107 108 3.434641 CGACTTTCCGACTGTCTACTACA 59.565 47.826 6.21 0.00 36.42 2.74
108 109 4.083643 CGACTTTCCGACTGTCTACTACAA 60.084 45.833 6.21 0.00 37.74 2.41
109 110 5.118642 ACTTTCCGACTGTCTACTACAAC 57.881 43.478 6.21 0.00 37.74 3.32
110 111 4.581824 ACTTTCCGACTGTCTACTACAACA 59.418 41.667 6.21 0.00 37.74 3.33
111 112 5.068198 ACTTTCCGACTGTCTACTACAACAA 59.932 40.000 6.21 0.00 37.74 2.83
112 113 4.761235 TCCGACTGTCTACTACAACAAG 57.239 45.455 6.21 0.00 37.74 3.16
113 114 4.139786 TCCGACTGTCTACTACAACAAGT 58.860 43.478 6.21 0.00 37.74 3.16
114 115 4.581824 TCCGACTGTCTACTACAACAAGTT 59.418 41.667 6.21 0.00 37.74 2.66
115 116 5.068198 TCCGACTGTCTACTACAACAAGTTT 59.932 40.000 6.21 0.00 37.74 2.66
116 117 5.175126 CCGACTGTCTACTACAACAAGTTTG 59.825 44.000 6.21 0.00 37.74 2.93
117 118 5.175126 CGACTGTCTACTACAACAAGTTTGG 59.825 44.000 6.21 0.00 37.74 3.28
118 119 4.814771 ACTGTCTACTACAACAAGTTTGGC 59.185 41.667 0.00 0.00 37.74 4.52
119 120 4.131596 TGTCTACTACAACAAGTTTGGCC 58.868 43.478 0.00 0.00 34.29 5.36
120 121 4.141574 TGTCTACTACAACAAGTTTGGCCT 60.142 41.667 3.32 0.00 34.29 5.19
121 122 4.213482 GTCTACTACAACAAGTTTGGCCTG 59.787 45.833 3.32 0.00 0.00 4.85
122 123 3.290948 ACTACAACAAGTTTGGCCTGA 57.709 42.857 3.32 0.00 0.00 3.86
123 124 2.949644 ACTACAACAAGTTTGGCCTGAC 59.050 45.455 3.32 2.11 0.00 3.51
124 125 2.143876 ACAACAAGTTTGGCCTGACT 57.856 45.000 3.32 4.87 0.00 3.41
125 126 2.024414 ACAACAAGTTTGGCCTGACTC 58.976 47.619 3.32 0.00 0.00 3.36
126 127 1.338020 CAACAAGTTTGGCCTGACTCC 59.662 52.381 3.32 0.00 0.00 3.85
127 128 0.535102 ACAAGTTTGGCCTGACTCCG 60.535 55.000 3.32 5.71 0.00 4.63
128 129 0.250295 CAAGTTTGGCCTGACTCCGA 60.250 55.000 3.32 0.00 0.00 4.55
129 130 0.693049 AAGTTTGGCCTGACTCCGAT 59.307 50.000 3.32 0.00 0.00 4.18
130 131 1.568504 AGTTTGGCCTGACTCCGATA 58.431 50.000 3.32 0.00 0.00 2.92
131 132 1.906574 AGTTTGGCCTGACTCCGATAA 59.093 47.619 3.32 0.00 0.00 1.75
132 133 2.093447 AGTTTGGCCTGACTCCGATAAG 60.093 50.000 3.32 0.00 0.00 1.73
133 134 0.830648 TTGGCCTGACTCCGATAAGG 59.169 55.000 3.32 0.00 42.97 2.69
134 135 1.048724 TGGCCTGACTCCGATAAGGG 61.049 60.000 3.32 0.00 41.52 3.95
135 136 0.759436 GGCCTGACTCCGATAAGGGA 60.759 60.000 0.00 0.00 41.52 4.20
144 145 3.201342 CGATAAGGGAGCGGTGATG 57.799 57.895 0.00 0.00 31.79 3.07
145 146 0.673985 CGATAAGGGAGCGGTGATGA 59.326 55.000 0.00 0.00 31.79 2.92
146 147 1.336332 CGATAAGGGAGCGGTGATGAG 60.336 57.143 0.00 0.00 31.79 2.90
147 148 1.001406 GATAAGGGAGCGGTGATGAGG 59.999 57.143 0.00 0.00 0.00 3.86
148 149 0.032515 TAAGGGAGCGGTGATGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
149 150 1.617947 AAGGGAGCGGTGATGAGGAC 61.618 60.000 0.00 0.00 0.00 3.85
150 151 2.105128 GGAGCGGTGATGAGGACG 59.895 66.667 0.00 0.00 0.00 4.79
151 152 2.105128 GAGCGGTGATGAGGACGG 59.895 66.667 0.00 0.00 0.00 4.79
152 153 4.148825 AGCGGTGATGAGGACGGC 62.149 66.667 0.00 0.00 39.32 5.68
154 155 4.129737 CGGTGATGAGGACGGCGT 62.130 66.667 14.65 14.65 0.00 5.68
155 156 2.202756 GGTGATGAGGACGGCGTC 60.203 66.667 30.72 30.72 0.00 5.19
163 164 4.011517 GGACGGCGTCCCTTTGGA 62.012 66.667 41.63 0.00 46.19 3.53
164 165 2.267961 GACGGCGTCCCTTTGGAT 59.732 61.111 28.72 0.00 44.28 3.41
165 166 1.814169 GACGGCGTCCCTTTGGATC 60.814 63.158 28.72 0.00 44.28 3.36
166 167 2.267642 CGGCGTCCCTTTGGATCA 59.732 61.111 0.00 0.00 44.28 2.92
167 168 2.106683 CGGCGTCCCTTTGGATCAC 61.107 63.158 0.00 0.00 44.28 3.06
168 169 1.299976 GGCGTCCCTTTGGATCACT 59.700 57.895 0.00 0.00 44.28 3.41
169 170 0.744771 GGCGTCCCTTTGGATCACTC 60.745 60.000 0.00 0.00 44.28 3.51
170 171 0.744771 GCGTCCCTTTGGATCACTCC 60.745 60.000 0.00 0.00 44.28 3.85
180 181 3.616956 TGGATCACTCCAGTGCTTTAG 57.383 47.619 1.49 0.00 46.95 1.85
181 182 2.906389 TGGATCACTCCAGTGCTTTAGT 59.094 45.455 1.49 0.00 46.95 2.24
182 183 3.055819 TGGATCACTCCAGTGCTTTAGTC 60.056 47.826 1.49 0.00 46.95 2.59
183 184 3.055819 GGATCACTCCAGTGCTTTAGTCA 60.056 47.826 1.49 0.00 45.25 3.41
184 185 4.383552 GGATCACTCCAGTGCTTTAGTCAT 60.384 45.833 1.49 0.00 45.25 3.06
185 186 4.623932 TCACTCCAGTGCTTTAGTCATT 57.376 40.909 1.49 0.00 45.25 2.57
186 187 4.318332 TCACTCCAGTGCTTTAGTCATTG 58.682 43.478 1.49 0.00 45.25 2.82
187 188 3.077359 ACTCCAGTGCTTTAGTCATTGC 58.923 45.455 0.00 0.00 0.00 3.56
188 189 3.244700 ACTCCAGTGCTTTAGTCATTGCT 60.245 43.478 0.00 0.00 0.00 3.91
189 190 4.020218 ACTCCAGTGCTTTAGTCATTGCTA 60.020 41.667 0.00 0.00 0.00 3.49
190 191 4.253685 TCCAGTGCTTTAGTCATTGCTAC 58.746 43.478 0.00 0.00 0.00 3.58
191 192 4.002982 CCAGTGCTTTAGTCATTGCTACA 58.997 43.478 0.00 0.00 0.00 2.74
192 193 4.455533 CCAGTGCTTTAGTCATTGCTACAA 59.544 41.667 0.00 0.00 0.00 2.41
193 194 5.385617 CAGTGCTTTAGTCATTGCTACAAC 58.614 41.667 0.00 0.00 0.00 3.32
194 195 5.049474 CAGTGCTTTAGTCATTGCTACAACA 60.049 40.000 0.00 0.00 0.00 3.33
195 196 5.707298 AGTGCTTTAGTCATTGCTACAACAT 59.293 36.000 0.00 0.00 0.00 2.71
196 197 5.796935 GTGCTTTAGTCATTGCTACAACATG 59.203 40.000 0.00 0.00 0.00 3.21
197 198 5.106197 TGCTTTAGTCATTGCTACAACATGG 60.106 40.000 0.00 0.00 0.00 3.66
198 199 5.123820 GCTTTAGTCATTGCTACAACATGGA 59.876 40.000 0.00 0.00 0.00 3.41
199 200 6.183360 GCTTTAGTCATTGCTACAACATGGAT 60.183 38.462 0.00 0.00 0.00 3.41
200 201 6.682423 TTAGTCATTGCTACAACATGGATG 57.318 37.500 0.00 0.00 0.00 3.51
201 202 3.379372 AGTCATTGCTACAACATGGATGC 59.621 43.478 0.00 0.00 0.00 3.91
202 203 3.129113 GTCATTGCTACAACATGGATGCA 59.871 43.478 0.00 0.00 0.00 3.96
203 204 3.955551 TCATTGCTACAACATGGATGCAT 59.044 39.130 0.00 0.00 0.00 3.96
204 205 4.403113 TCATTGCTACAACATGGATGCATT 59.597 37.500 0.00 0.00 0.00 3.56
205 206 4.374843 TTGCTACAACATGGATGCATTC 57.625 40.909 0.00 0.00 0.00 2.67
206 207 3.623703 TGCTACAACATGGATGCATTCT 58.376 40.909 6.53 0.00 0.00 2.40
207 208 4.018490 TGCTACAACATGGATGCATTCTT 58.982 39.130 6.53 0.00 0.00 2.52
208 209 4.463539 TGCTACAACATGGATGCATTCTTT 59.536 37.500 6.53 0.00 0.00 2.52
209 210 5.047164 TGCTACAACATGGATGCATTCTTTT 60.047 36.000 6.53 0.00 0.00 2.27
210 211 5.870978 GCTACAACATGGATGCATTCTTTTT 59.129 36.000 6.53 0.00 0.00 1.94
211 212 6.035327 GCTACAACATGGATGCATTCTTTTTC 59.965 38.462 6.53 0.00 0.00 2.29
212 213 6.105397 ACAACATGGATGCATTCTTTTTCT 57.895 33.333 6.53 0.00 0.00 2.52
213 214 5.929992 ACAACATGGATGCATTCTTTTTCTG 59.070 36.000 6.53 0.00 0.00 3.02
214 215 5.733620 ACATGGATGCATTCTTTTTCTGT 57.266 34.783 6.53 0.00 0.00 3.41
215 216 5.475719 ACATGGATGCATTCTTTTTCTGTG 58.524 37.500 6.53 0.00 0.00 3.66
219 220 7.048629 TGGATGCATTCTTTTTCTGTGTTTA 57.951 32.000 6.53 0.00 0.00 2.01
253 254 1.658373 CGCGGCATGATGAAAAGATCG 60.658 52.381 0.00 0.00 0.00 3.69
294 296 6.375455 ACAATACTGCTCATTTTTGGACTAGG 59.625 38.462 0.00 0.00 0.00 3.02
303 305 5.838521 TCATTTTTGGACTAGGGAAAGCTTT 59.161 36.000 12.53 12.53 0.00 3.51
306 308 4.986054 TTGGACTAGGGAAAGCTTTACA 57.014 40.909 22.79 2.44 0.00 2.41
330 333 2.021457 TCGTCGAGAATGGATGCACTA 58.979 47.619 0.00 0.00 29.11 2.74
373 377 5.701290 GCTGTGTAACTCCATAAGTTTGACT 59.299 40.000 0.00 0.00 46.26 3.41
374 378 6.347725 GCTGTGTAACTCCATAAGTTTGACTG 60.348 42.308 0.00 0.41 46.26 3.51
375 379 6.588204 TGTGTAACTCCATAAGTTTGACTGT 58.412 36.000 0.00 0.00 46.26 3.55
376 380 7.051623 TGTGTAACTCCATAAGTTTGACTGTT 58.948 34.615 0.00 0.00 46.26 3.16
377 381 7.554835 TGTGTAACTCCATAAGTTTGACTGTTT 59.445 33.333 0.00 0.00 46.26 2.83
378 382 8.068380 GTGTAACTCCATAAGTTTGACTGTTTC 58.932 37.037 0.00 0.00 46.26 2.78
379 383 7.990886 TGTAACTCCATAAGTTTGACTGTTTCT 59.009 33.333 0.00 0.00 46.26 2.52
380 384 6.867662 ACTCCATAAGTTTGACTGTTTCTG 57.132 37.500 0.00 0.00 33.03 3.02
409 417 3.197766 GGAGAGAGAGAGTGAGAGACTGA 59.802 52.174 0.00 0.00 33.83 3.41
434 442 4.520179 GGATGGGTACTACGTTGGAAATT 58.480 43.478 0.00 0.00 0.00 1.82
636 662 0.681733 GTGCAGGAGAGGAGAACACA 59.318 55.000 0.00 0.00 0.00 3.72
637 663 0.681733 TGCAGGAGAGGAGAACACAC 59.318 55.000 0.00 0.00 0.00 3.82
638 664 0.972883 GCAGGAGAGGAGAACACACT 59.027 55.000 0.00 0.00 0.00 3.55
640 666 2.524306 CAGGAGAGGAGAACACACTCT 58.476 52.381 0.00 0.00 43.81 3.24
641 667 2.896685 CAGGAGAGGAGAACACACTCTT 59.103 50.000 0.00 0.00 41.38 2.85
642 668 3.323403 CAGGAGAGGAGAACACACTCTTT 59.677 47.826 0.00 0.00 41.38 2.52
643 669 3.323403 AGGAGAGGAGAACACACTCTTTG 59.677 47.826 0.00 0.00 41.38 2.77
662 715 0.322816 GGATCCACTGCTTTGCTGGA 60.323 55.000 6.95 3.58 38.47 3.86
718 782 2.368875 TCCACAAGTTCTTCCTCACTCC 59.631 50.000 0.00 0.00 0.00 3.85
753 825 6.123651 CCTTCTTCTTCCTCTGCTACTAGTA 58.876 44.000 1.89 1.89 0.00 1.82
760 832 2.359531 CCTCTGCTACTAGTACCAGTGC 59.640 54.545 19.94 12.79 0.00 4.40
799 876 2.167900 GCCCGAGTACTACCATTTCACT 59.832 50.000 0.00 0.00 0.00 3.41
824 901 5.379732 CTCAGAAAGAGGTACGAAGAAGT 57.620 43.478 0.00 0.00 40.84 3.01
825 902 6.497785 CTCAGAAAGAGGTACGAAGAAGTA 57.502 41.667 0.00 0.00 40.84 2.24
826 903 6.497785 TCAGAAAGAGGTACGAAGAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
827 904 5.096849 CAGAAAGAGGTACGAAGAAGTAGC 58.903 45.833 0.00 0.00 43.26 3.58
828 905 4.765856 AGAAAGAGGTACGAAGAAGTAGCA 59.234 41.667 8.68 0.00 44.78 3.49
829 906 4.437772 AAGAGGTACGAAGAAGTAGCAC 57.562 45.455 8.68 3.09 44.78 4.40
856 933 3.196254 ACTGCATTTTCACAATCCATCCC 59.804 43.478 0.00 0.00 0.00 3.85
947 1041 5.238650 AGCGCAGTATGTTTTAGTTTGAACT 59.761 36.000 11.47 1.60 40.00 3.01
948 1042 5.339611 GCGCAGTATGTTTTAGTTTGAACTG 59.660 40.000 0.30 0.00 38.01 3.16
958 1063 8.842280 TGTTTTAGTTTGAACTGTAACCATAGG 58.158 33.333 6.64 0.00 40.07 2.57
1154 1264 4.559063 CATGGCGGCCTCCTCCAG 62.559 72.222 21.46 0.00 32.78 3.86
1240 1380 3.857309 AAGCAGCAGCCCCAGTGAC 62.857 63.158 0.00 0.00 43.56 3.67
1283 1427 3.044059 GCATGCAGTCGTGGAAGCC 62.044 63.158 14.21 0.00 33.03 4.35
1287 1431 2.092882 GCAGTCGTGGAAGCCGTAC 61.093 63.158 0.00 0.00 0.00 3.67
1290 1434 1.513586 GTCGTGGAAGCCGTACTCG 60.514 63.158 0.00 0.00 0.00 4.18
1294 1438 0.179169 GTGGAAGCCGTACTCGTCTC 60.179 60.000 0.00 0.00 35.01 3.36
1395 1553 9.490379 AGTAGTGATTTAGTTCTACTTTTGGTG 57.510 33.333 0.00 0.00 39.66 4.17
1396 1554 9.485206 GTAGTGATTTAGTTCTACTTTTGGTGA 57.515 33.333 0.00 0.00 32.64 4.02
1403 1561 8.911918 TTAGTTCTACTTTTGGTGATTTAGCA 57.088 30.769 0.00 0.00 34.39 3.49
1413 1571 4.326826 TGGTGATTTAGCAAGAGGAAGTG 58.673 43.478 0.00 0.00 33.01 3.16
1420 1578 2.609747 AGCAAGAGGAAGTGGTAGTGA 58.390 47.619 0.00 0.00 0.00 3.41
1452 1613 2.422597 GCTTTTGGGGGTTGTATTTGC 58.577 47.619 0.00 0.00 0.00 3.68
1490 1652 2.053627 GCGCCATTTCTTGTTTCAGTG 58.946 47.619 0.00 0.00 0.00 3.66
1495 1657 4.682860 GCCATTTCTTGTTTCAGTGTGATG 59.317 41.667 0.00 0.00 0.00 3.07
1496 1663 5.507817 GCCATTTCTTGTTTCAGTGTGATGA 60.508 40.000 0.00 0.00 0.00 2.92
1514 1681 4.162540 CCCTGATGGTGGTGGGTA 57.837 61.111 0.00 0.00 35.13 3.69
1515 1682 1.607612 CCCTGATGGTGGTGGGTAC 59.392 63.158 0.00 0.00 35.13 3.34
1550 1754 5.794894 ACCAGACTACCAGTAACATGAAAG 58.205 41.667 0.00 0.00 0.00 2.62
1551 1755 5.542635 ACCAGACTACCAGTAACATGAAAGA 59.457 40.000 0.00 0.00 0.00 2.52
1552 1756 6.213600 ACCAGACTACCAGTAACATGAAAGAT 59.786 38.462 0.00 0.00 0.00 2.40
1553 1757 6.536582 CCAGACTACCAGTAACATGAAAGATG 59.463 42.308 0.00 0.00 0.00 2.90
1554 1758 6.536582 CAGACTACCAGTAACATGAAAGATGG 59.463 42.308 0.00 3.47 0.00 3.51
1555 1759 6.213600 AGACTACCAGTAACATGAAAGATGGT 59.786 38.462 0.00 9.41 42.08 3.55
1556 1760 6.779860 ACTACCAGTAACATGAAAGATGGTT 58.220 36.000 15.67 0.00 40.03 3.67
1557 1761 6.879458 ACTACCAGTAACATGAAAGATGGTTC 59.121 38.462 15.67 0.00 40.03 3.62
1558 1762 5.630121 ACCAGTAACATGAAAGATGGTTCA 58.370 37.500 0.00 0.00 41.59 3.18
1559 1763 5.473504 ACCAGTAACATGAAAGATGGTTCAC 59.526 40.000 0.00 0.00 40.22 3.18
1560 1764 5.390885 CCAGTAACATGAAAGATGGTTCACG 60.391 44.000 0.00 0.00 40.22 4.35
1561 1765 5.179368 CAGTAACATGAAAGATGGTTCACGT 59.821 40.000 0.00 0.00 40.22 4.49
1562 1766 5.763204 AGTAACATGAAAGATGGTTCACGTT 59.237 36.000 0.00 4.98 43.88 3.99
1563 1767 6.932400 AGTAACATGAAAGATGGTTCACGTTA 59.068 34.615 0.00 3.29 40.89 3.18
1564 1768 6.817765 AACATGAAAGATGGTTCACGTTAT 57.182 33.333 0.00 0.00 40.89 1.89
1565 1769 6.817765 ACATGAAAGATGGTTCACGTTATT 57.182 33.333 0.00 0.00 40.22 1.40
1566 1770 6.842163 ACATGAAAGATGGTTCACGTTATTC 58.158 36.000 0.00 0.00 40.22 1.75
1567 1771 5.524511 TGAAAGATGGTTCACGTTATTCG 57.475 39.130 0.00 0.00 46.00 3.34
1568 1772 5.231702 TGAAAGATGGTTCACGTTATTCGA 58.768 37.500 0.00 0.00 43.23 3.71
1569 1773 5.347635 TGAAAGATGGTTCACGTTATTCGAG 59.652 40.000 0.00 0.00 43.23 4.04
1570 1774 4.451629 AGATGGTTCACGTTATTCGAGT 57.548 40.909 0.00 0.00 42.86 4.18
1571 1775 5.571784 AGATGGTTCACGTTATTCGAGTA 57.428 39.130 0.00 0.00 42.86 2.59
1572 1776 5.338365 AGATGGTTCACGTTATTCGAGTAC 58.662 41.667 0.00 0.00 42.86 2.73
1573 1777 4.771590 TGGTTCACGTTATTCGAGTACT 57.228 40.909 0.00 0.00 42.86 2.73
1574 1778 4.478699 TGGTTCACGTTATTCGAGTACTG 58.521 43.478 0.00 0.00 42.86 2.74
1575 1779 3.855950 GGTTCACGTTATTCGAGTACTGG 59.144 47.826 0.00 0.00 42.86 4.00
1576 1780 3.141002 TCACGTTATTCGAGTACTGGC 57.859 47.619 0.00 0.00 42.86 4.85
1577 1781 1.844357 CACGTTATTCGAGTACTGGCG 59.156 52.381 0.00 0.00 42.86 5.69
1578 1782 1.739466 ACGTTATTCGAGTACTGGCGA 59.261 47.619 0.00 0.35 42.86 5.54
1586 1790 1.324736 CGAGTACTGGCGAAAATCTGC 59.675 52.381 0.00 0.00 0.00 4.26
1605 1809 9.979578 AAATCTGCAGTTTAATGTGAACAATTA 57.020 25.926 14.67 0.00 0.00 1.40
1672 1876 0.038251 TCGACTGCCAGACATGTGTC 60.038 55.000 1.15 2.01 45.08 3.67
1684 1888 2.814336 GACATGTGTCTGAAGGGGTTTC 59.186 50.000 1.15 0.00 41.65 2.78
1719 1923 5.334414 GCTCCTGACCGAAATATTGCAATAG 60.334 44.000 22.76 12.15 0.00 1.73
1743 1947 1.597854 CACTTGCGGACTGAAGGCA 60.598 57.895 0.00 0.00 34.35 4.75
1745 1949 0.613260 ACTTGCGGACTGAAGGCATA 59.387 50.000 0.00 0.00 36.44 3.14
1746 1950 1.003118 ACTTGCGGACTGAAGGCATAA 59.997 47.619 0.00 0.00 36.44 1.90
1747 1951 1.667724 CTTGCGGACTGAAGGCATAAG 59.332 52.381 0.00 0.00 36.44 1.73
1748 1952 0.107703 TGCGGACTGAAGGCATAAGG 60.108 55.000 0.00 0.00 0.00 2.69
1749 1953 0.178068 GCGGACTGAAGGCATAAGGA 59.822 55.000 0.00 0.00 0.00 3.36
1750 1954 1.406887 GCGGACTGAAGGCATAAGGAA 60.407 52.381 0.00 0.00 0.00 3.36
1751 1955 2.746472 GCGGACTGAAGGCATAAGGAAT 60.746 50.000 0.00 0.00 0.00 3.01
1752 1956 3.134458 CGGACTGAAGGCATAAGGAATC 58.866 50.000 0.00 0.00 0.00 2.52
1753 1957 3.432186 CGGACTGAAGGCATAAGGAATCA 60.432 47.826 0.00 0.00 0.00 2.57
1754 1958 4.723309 GGACTGAAGGCATAAGGAATCAT 58.277 43.478 0.00 0.00 0.00 2.45
1755 1959 4.759183 GGACTGAAGGCATAAGGAATCATC 59.241 45.833 0.00 0.00 0.00 2.92
1756 1960 5.455899 GGACTGAAGGCATAAGGAATCATCT 60.456 44.000 0.00 0.00 0.00 2.90
1757 1961 6.239714 GGACTGAAGGCATAAGGAATCATCTA 60.240 42.308 0.00 0.00 0.00 1.98
1758 1962 6.529220 ACTGAAGGCATAAGGAATCATCTAC 58.471 40.000 0.00 0.00 0.00 2.59
1759 1963 6.100279 ACTGAAGGCATAAGGAATCATCTACA 59.900 38.462 0.00 0.00 0.00 2.74
1760 1964 6.291377 TGAAGGCATAAGGAATCATCTACAC 58.709 40.000 0.00 0.00 0.00 2.90
1761 1965 4.887748 AGGCATAAGGAATCATCTACACG 58.112 43.478 0.00 0.00 0.00 4.49
1762 1966 3.433615 GGCATAAGGAATCATCTACACGC 59.566 47.826 0.00 0.00 0.00 5.34
1763 1967 4.058124 GCATAAGGAATCATCTACACGCA 58.942 43.478 0.00 0.00 0.00 5.24
1815 2022 5.945144 AGCTTTGCCTCATCCATTAATTT 57.055 34.783 0.00 0.00 0.00 1.82
1816 2023 6.303903 AGCTTTGCCTCATCCATTAATTTT 57.696 33.333 0.00 0.00 0.00 1.82
1823 2071 8.821686 TGCCTCATCCATTAATTTTAAGAAGA 57.178 30.769 0.00 0.00 0.00 2.87
1888 2138 1.417890 ACTAGCTGTTTGGTGCTCAGT 59.582 47.619 0.00 0.00 40.35 3.41
1920 2172 3.270877 GTGTAAATTCCGGCTCACATCT 58.729 45.455 0.00 0.00 0.00 2.90
1927 2179 1.478510 TCCGGCTCACATCTTTCTCTC 59.521 52.381 0.00 0.00 0.00 3.20
1949 2201 1.078497 CTGCCACATCAGCCCGTTA 60.078 57.895 0.00 0.00 0.00 3.18
2012 2303 2.534990 CCAAACTTTAGCCCATTCCCA 58.465 47.619 0.00 0.00 0.00 4.37
2013 2304 2.233676 CCAAACTTTAGCCCATTCCCAC 59.766 50.000 0.00 0.00 0.00 4.61
2014 2305 3.165071 CAAACTTTAGCCCATTCCCACT 58.835 45.455 0.00 0.00 0.00 4.00
2024 2315 2.774234 CCCATTCCCACTATCTCACACT 59.226 50.000 0.00 0.00 0.00 3.55
2040 2331 0.742505 CACTCCGACCGCCATAGTAA 59.257 55.000 0.00 0.00 0.00 2.24
2045 2336 3.875134 CTCCGACCGCCATAGTAAATTTT 59.125 43.478 0.00 0.00 0.00 1.82
2047 2338 3.302870 CCGACCGCCATAGTAAATTTTCG 60.303 47.826 0.00 0.00 0.00 3.46
2050 2341 3.307782 ACCGCCATAGTAAATTTTCGTCG 59.692 43.478 0.00 0.00 0.00 5.12
2056 2347 1.392510 AGTAAATTTTCGTCGCCGCTC 59.607 47.619 0.00 0.00 0.00 5.03
2065 2356 3.760035 TCGCCGCTCCCAACTCTC 61.760 66.667 0.00 0.00 0.00 3.20
2075 2366 1.241990 CCCAACTCTCTCCGTCACGA 61.242 60.000 0.00 0.00 0.00 4.35
2080 2371 1.968703 CTCTCTCCGTCACGACCGTC 61.969 65.000 0.00 0.00 0.00 4.79
2121 2412 3.345808 CCGGTTGTCACTGCGTGG 61.346 66.667 0.00 0.00 33.87 4.94
2133 2424 4.752879 GCGTGGGCCGAGCAGTAA 62.753 66.667 16.64 0.00 39.56 2.24
2184 2475 1.609501 CCGTCCCCAACTCTCTCCA 60.610 63.158 0.00 0.00 0.00 3.86
2194 2485 0.035343 ACTCTCTCCATCACCGTCGA 60.035 55.000 0.00 0.00 0.00 4.20
2198 2489 3.052620 CTCCATCACCGTCGACGCT 62.053 63.158 31.73 16.93 38.18 5.07
2204 2495 3.735029 ACCGTCGACGCTGTCCTC 61.735 66.667 31.73 0.00 38.18 3.71
2205 2496 3.432588 CCGTCGACGCTGTCCTCT 61.433 66.667 31.73 0.00 38.18 3.69
2206 2497 2.561885 CGTCGACGCTGTCCTCTT 59.438 61.111 26.59 0.00 0.00 2.85
2208 2499 1.444553 GTCGACGCTGTCCTCTTGG 60.445 63.158 0.00 0.00 0.00 3.61
2209 2500 1.901948 TCGACGCTGTCCTCTTGGT 60.902 57.895 0.00 0.00 34.23 3.67
2210 2501 1.734477 CGACGCTGTCCTCTTGGTG 60.734 63.158 3.65 0.00 34.23 4.17
2211 2502 1.374758 GACGCTGTCCTCTTGGTGG 60.375 63.158 0.00 0.00 34.23 4.61
2212 2503 2.046892 CGCTGTCCTCTTGGTGGG 60.047 66.667 0.00 0.00 34.23 4.61
2235 2526 4.262851 GCCTCCTTATCCATTCCTCTTCTC 60.263 50.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.091449 AGAAGTATACATCGAAAGGATCCAATC 58.909 37.037 15.82 10.53 31.28 2.67
7 8 7.967908 AGAAGTATACATCGAAAGGATCCAAT 58.032 34.615 15.82 0.94 31.28 3.16
8 9 7.287927 AGAGAAGTATACATCGAAAGGATCCAA 59.712 37.037 15.82 0.00 31.28 3.53
9 10 6.778069 AGAGAAGTATACATCGAAAGGATCCA 59.222 38.462 15.82 0.00 31.28 3.41
10 11 7.222000 AGAGAAGTATACATCGAAAGGATCC 57.778 40.000 2.48 2.48 31.28 3.36
11 12 8.573035 AGAAGAGAAGTATACATCGAAAGGATC 58.427 37.037 5.50 0.00 31.28 3.36
12 13 8.472007 AGAAGAGAAGTATACATCGAAAGGAT 57.528 34.615 5.50 0.00 35.09 3.24
13 14 7.883391 AGAAGAGAAGTATACATCGAAAGGA 57.117 36.000 5.50 0.00 0.00 3.36
14 15 7.377397 CGAAGAAGAGAAGTATACATCGAAAGG 59.623 40.741 5.50 0.00 0.00 3.11
15 16 7.377397 CCGAAGAAGAGAAGTATACATCGAAAG 59.623 40.741 5.50 0.00 0.00 2.62
16 17 7.194278 CCGAAGAAGAGAAGTATACATCGAAA 58.806 38.462 5.50 0.00 0.00 3.46
17 18 6.726230 CCGAAGAAGAGAAGTATACATCGAA 58.274 40.000 5.50 0.00 0.00 3.71
18 19 5.277876 GCCGAAGAAGAGAAGTATACATCGA 60.278 44.000 5.50 0.00 0.00 3.59
19 20 4.912766 GCCGAAGAAGAGAAGTATACATCG 59.087 45.833 5.50 0.00 0.00 3.84
20 21 4.912766 CGCCGAAGAAGAGAAGTATACATC 59.087 45.833 5.50 2.46 0.00 3.06
21 22 4.579340 TCGCCGAAGAAGAGAAGTATACAT 59.421 41.667 5.50 0.00 0.00 2.29
22 23 3.943381 TCGCCGAAGAAGAGAAGTATACA 59.057 43.478 5.50 0.00 0.00 2.29
23 24 4.035441 AGTCGCCGAAGAAGAGAAGTATAC 59.965 45.833 0.00 0.00 0.00 1.47
24 25 4.035324 CAGTCGCCGAAGAAGAGAAGTATA 59.965 45.833 0.00 0.00 0.00 1.47
25 26 3.018149 AGTCGCCGAAGAAGAGAAGTAT 58.982 45.455 0.00 0.00 0.00 2.12
26 27 2.161808 CAGTCGCCGAAGAAGAGAAGTA 59.838 50.000 0.00 0.00 0.00 2.24
27 28 1.068194 CAGTCGCCGAAGAAGAGAAGT 60.068 52.381 0.00 0.00 0.00 3.01
28 29 1.068194 ACAGTCGCCGAAGAAGAGAAG 60.068 52.381 0.00 0.00 0.00 2.85
29 30 0.959553 ACAGTCGCCGAAGAAGAGAA 59.040 50.000 0.00 0.00 0.00 2.87
30 31 0.959553 AACAGTCGCCGAAGAAGAGA 59.040 50.000 0.00 0.00 0.00 3.10
31 32 1.063806 CAACAGTCGCCGAAGAAGAG 58.936 55.000 0.00 0.00 0.00 2.85
32 33 0.944311 GCAACAGTCGCCGAAGAAGA 60.944 55.000 0.00 0.00 0.00 2.87
33 34 0.946221 AGCAACAGTCGCCGAAGAAG 60.946 55.000 0.00 0.00 0.00 2.85
34 35 0.315886 TAGCAACAGTCGCCGAAGAA 59.684 50.000 0.00 0.00 0.00 2.52
35 36 0.530744 ATAGCAACAGTCGCCGAAGA 59.469 50.000 0.00 0.00 0.00 2.87
36 37 1.359848 AATAGCAACAGTCGCCGAAG 58.640 50.000 0.00 0.00 0.00 3.79
37 38 1.803334 AAATAGCAACAGTCGCCGAA 58.197 45.000 0.00 0.00 0.00 4.30
38 39 1.803334 AAAATAGCAACAGTCGCCGA 58.197 45.000 0.00 0.00 0.00 5.54
39 40 2.671396 ACTAAAATAGCAACAGTCGCCG 59.329 45.455 0.00 0.00 0.00 6.46
40 41 3.727970 GCACTAAAATAGCAACAGTCGCC 60.728 47.826 0.00 0.00 0.00 5.54
41 42 3.120338 TGCACTAAAATAGCAACAGTCGC 60.120 43.478 0.00 0.00 34.97 5.19
42 43 4.152402 AGTGCACTAAAATAGCAACAGTCG 59.848 41.667 20.16 0.00 40.35 4.18
43 44 5.385617 CAGTGCACTAAAATAGCAACAGTC 58.614 41.667 21.20 0.00 40.35 3.51
44 45 4.216257 CCAGTGCACTAAAATAGCAACAGT 59.784 41.667 21.20 0.00 40.35 3.55
45 46 4.216257 ACCAGTGCACTAAAATAGCAACAG 59.784 41.667 21.20 1.75 40.35 3.16
46 47 4.141287 ACCAGTGCACTAAAATAGCAACA 58.859 39.130 21.20 0.00 40.35 3.33
47 48 4.379499 GGACCAGTGCACTAAAATAGCAAC 60.379 45.833 21.20 2.41 40.35 4.17
48 49 3.756434 GGACCAGTGCACTAAAATAGCAA 59.244 43.478 21.20 0.00 40.35 3.91
49 50 3.343617 GGACCAGTGCACTAAAATAGCA 58.656 45.455 21.20 0.00 35.63 3.49
50 51 2.351726 CGGACCAGTGCACTAAAATAGC 59.648 50.000 21.20 4.86 0.00 2.97
51 52 2.936498 CCGGACCAGTGCACTAAAATAG 59.064 50.000 21.20 5.78 0.00 1.73
52 53 2.303600 ACCGGACCAGTGCACTAAAATA 59.696 45.455 21.20 0.00 0.00 1.40
53 54 1.073284 ACCGGACCAGTGCACTAAAAT 59.927 47.619 21.20 4.95 0.00 1.82
54 55 0.470766 ACCGGACCAGTGCACTAAAA 59.529 50.000 21.20 0.00 0.00 1.52
55 56 0.470766 AACCGGACCAGTGCACTAAA 59.529 50.000 21.20 0.00 0.00 1.85
56 57 0.034337 GAACCGGACCAGTGCACTAA 59.966 55.000 21.20 0.00 0.00 2.24
57 58 0.830444 AGAACCGGACCAGTGCACTA 60.830 55.000 21.20 0.00 0.00 2.74
58 59 1.696097 AAGAACCGGACCAGTGCACT 61.696 55.000 15.25 15.25 0.00 4.40
59 60 0.034337 TAAGAACCGGACCAGTGCAC 59.966 55.000 9.46 9.40 0.00 4.57
60 61 0.320374 CTAAGAACCGGACCAGTGCA 59.680 55.000 9.46 0.00 0.00 4.57
61 62 1.019805 GCTAAGAACCGGACCAGTGC 61.020 60.000 9.46 1.47 0.00 4.40
62 63 0.320374 TGCTAAGAACCGGACCAGTG 59.680 55.000 9.46 0.00 0.00 3.66
63 64 0.320697 GTGCTAAGAACCGGACCAGT 59.679 55.000 9.46 0.00 0.00 4.00
64 65 0.736325 CGTGCTAAGAACCGGACCAG 60.736 60.000 9.46 3.52 0.00 4.00
65 66 1.180456 TCGTGCTAAGAACCGGACCA 61.180 55.000 9.46 0.00 0.00 4.02
66 67 0.735287 GTCGTGCTAAGAACCGGACC 60.735 60.000 9.46 0.00 0.00 4.46
67 68 1.069378 CGTCGTGCTAAGAACCGGAC 61.069 60.000 9.46 0.99 0.00 4.79
68 69 1.210931 CGTCGTGCTAAGAACCGGA 59.789 57.895 9.46 0.00 0.00 5.14
69 70 1.069378 GTCGTCGTGCTAAGAACCGG 61.069 60.000 0.00 0.00 0.00 5.28
70 71 0.109873 AGTCGTCGTGCTAAGAACCG 60.110 55.000 0.00 0.00 0.00 4.44
71 72 2.061740 AAGTCGTCGTGCTAAGAACC 57.938 50.000 0.00 0.00 0.00 3.62
72 73 2.407696 GGAAAGTCGTCGTGCTAAGAAC 59.592 50.000 0.00 0.00 0.00 3.01
73 74 2.669364 GGAAAGTCGTCGTGCTAAGAA 58.331 47.619 0.00 0.00 0.00 2.52
74 75 1.400629 CGGAAAGTCGTCGTGCTAAGA 60.401 52.381 0.00 0.00 0.00 2.10
75 76 0.982673 CGGAAAGTCGTCGTGCTAAG 59.017 55.000 0.00 0.00 0.00 2.18
76 77 0.592637 TCGGAAAGTCGTCGTGCTAA 59.407 50.000 0.00 0.00 0.00 3.09
77 78 0.110056 GTCGGAAAGTCGTCGTGCTA 60.110 55.000 0.00 0.00 0.00 3.49
78 79 1.371389 GTCGGAAAGTCGTCGTGCT 60.371 57.895 0.00 0.00 0.00 4.40
79 80 1.371389 AGTCGGAAAGTCGTCGTGC 60.371 57.895 0.00 0.00 0.00 5.34
80 81 0.317603 ACAGTCGGAAAGTCGTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
81 82 0.040603 GACAGTCGGAAAGTCGTCGT 60.041 55.000 0.00 0.00 0.00 4.34
82 83 0.237761 AGACAGTCGGAAAGTCGTCG 59.762 55.000 0.00 0.00 37.36 5.12
83 84 2.483491 AGTAGACAGTCGGAAAGTCGTC 59.517 50.000 0.00 0.00 37.36 4.20
84 85 2.502295 AGTAGACAGTCGGAAAGTCGT 58.498 47.619 0.00 0.00 37.36 4.34
85 86 3.434641 TGTAGTAGACAGTCGGAAAGTCG 59.565 47.826 0.00 0.00 37.36 4.18
86 87 5.152804 GTTGTAGTAGACAGTCGGAAAGTC 58.847 45.833 0.00 3.60 39.88 3.01
87 88 4.581824 TGTTGTAGTAGACAGTCGGAAAGT 59.418 41.667 0.00 0.00 39.88 2.66
88 89 5.117355 TGTTGTAGTAGACAGTCGGAAAG 57.883 43.478 0.00 0.00 39.88 2.62
89 90 5.068198 ACTTGTTGTAGTAGACAGTCGGAAA 59.932 40.000 0.00 0.00 39.88 3.13
90 91 4.581824 ACTTGTTGTAGTAGACAGTCGGAA 59.418 41.667 0.00 0.00 39.88 4.30
91 92 4.139786 ACTTGTTGTAGTAGACAGTCGGA 58.860 43.478 0.00 0.00 39.88 4.55
92 93 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
93 94 5.175126 CCAAACTTGTTGTAGTAGACAGTCG 59.825 44.000 0.00 0.00 39.88 4.18
94 95 5.050295 GCCAAACTTGTTGTAGTAGACAGTC 60.050 44.000 0.00 0.00 39.88 3.51
95 96 4.814771 GCCAAACTTGTTGTAGTAGACAGT 59.185 41.667 0.00 0.00 39.88 3.55
96 97 4.213482 GGCCAAACTTGTTGTAGTAGACAG 59.787 45.833 0.00 0.00 39.88 3.51
97 98 4.131596 GGCCAAACTTGTTGTAGTAGACA 58.868 43.478 0.00 0.00 35.78 3.41
98 99 4.213482 CAGGCCAAACTTGTTGTAGTAGAC 59.787 45.833 5.01 0.00 0.00 2.59
99 100 4.101898 TCAGGCCAAACTTGTTGTAGTAGA 59.898 41.667 5.01 0.00 0.00 2.59
100 101 4.213482 GTCAGGCCAAACTTGTTGTAGTAG 59.787 45.833 5.01 0.00 0.00 2.57
101 102 4.131596 GTCAGGCCAAACTTGTTGTAGTA 58.868 43.478 5.01 0.00 0.00 1.82
102 103 2.949644 GTCAGGCCAAACTTGTTGTAGT 59.050 45.455 5.01 0.00 0.00 2.73
103 104 3.214328 AGTCAGGCCAAACTTGTTGTAG 58.786 45.455 5.01 0.00 0.00 2.74
104 105 3.211045 GAGTCAGGCCAAACTTGTTGTA 58.789 45.455 5.01 0.00 0.00 2.41
105 106 2.024414 GAGTCAGGCCAAACTTGTTGT 58.976 47.619 5.01 0.00 0.00 3.32
106 107 1.338020 GGAGTCAGGCCAAACTTGTTG 59.662 52.381 5.01 0.00 0.00 3.33
107 108 1.692411 GGAGTCAGGCCAAACTTGTT 58.308 50.000 5.01 0.00 0.00 2.83
108 109 0.535102 CGGAGTCAGGCCAAACTTGT 60.535 55.000 5.01 0.00 0.00 3.16
109 110 0.250295 TCGGAGTCAGGCCAAACTTG 60.250 55.000 5.01 5.05 0.00 3.16
110 111 0.693049 ATCGGAGTCAGGCCAAACTT 59.307 50.000 5.01 0.00 0.00 2.66
111 112 1.568504 TATCGGAGTCAGGCCAAACT 58.431 50.000 5.01 7.79 0.00 2.66
112 113 2.280628 CTTATCGGAGTCAGGCCAAAC 58.719 52.381 5.01 1.66 0.00 2.93
113 114 1.209504 CCTTATCGGAGTCAGGCCAAA 59.790 52.381 5.01 0.00 33.16 3.28
114 115 0.830648 CCTTATCGGAGTCAGGCCAA 59.169 55.000 5.01 0.00 33.16 4.52
115 116 1.048724 CCCTTATCGGAGTCAGGCCA 61.049 60.000 5.01 0.00 33.16 5.36
116 117 0.759436 TCCCTTATCGGAGTCAGGCC 60.759 60.000 0.00 0.00 33.16 5.19
117 118 0.676736 CTCCCTTATCGGAGTCAGGC 59.323 60.000 0.00 0.00 43.94 4.85
124 125 0.469331 ATCACCGCTCCCTTATCGGA 60.469 55.000 6.91 0.00 45.53 4.55
126 127 0.673985 TCATCACCGCTCCCTTATCG 59.326 55.000 0.00 0.00 0.00 2.92
127 128 1.001406 CCTCATCACCGCTCCCTTATC 59.999 57.143 0.00 0.00 0.00 1.75
128 129 1.051812 CCTCATCACCGCTCCCTTAT 58.948 55.000 0.00 0.00 0.00 1.73
129 130 0.032515 TCCTCATCACCGCTCCCTTA 60.033 55.000 0.00 0.00 0.00 2.69
130 131 1.306141 TCCTCATCACCGCTCCCTT 60.306 57.895 0.00 0.00 0.00 3.95
131 132 2.060980 GTCCTCATCACCGCTCCCT 61.061 63.158 0.00 0.00 0.00 4.20
132 133 2.501610 GTCCTCATCACCGCTCCC 59.498 66.667 0.00 0.00 0.00 4.30
133 134 2.105128 CGTCCTCATCACCGCTCC 59.895 66.667 0.00 0.00 0.00 4.70
134 135 2.105128 CCGTCCTCATCACCGCTC 59.895 66.667 0.00 0.00 0.00 5.03
135 136 4.148825 GCCGTCCTCATCACCGCT 62.149 66.667 0.00 0.00 0.00 5.52
137 138 4.129737 ACGCCGTCCTCATCACCG 62.130 66.667 0.00 0.00 0.00 4.94
138 139 2.202756 GACGCCGTCCTCATCACC 60.203 66.667 5.81 0.00 0.00 4.02
155 156 5.712919 AAGCACTGGAGTGATCCAAAGGG 62.713 52.174 11.06 0.00 44.74 3.95
156 157 2.553904 AAGCACTGGAGTGATCCAAAGG 60.554 50.000 11.06 0.00 44.74 3.11
157 158 2.787994 AAGCACTGGAGTGATCCAAAG 58.212 47.619 11.06 0.00 44.74 2.77
158 159 2.957402 AAGCACTGGAGTGATCCAAA 57.043 45.000 11.06 0.00 44.74 3.28
159 160 2.957402 AAAGCACTGGAGTGATCCAA 57.043 45.000 11.06 0.00 44.74 3.53
160 161 2.906389 ACTAAAGCACTGGAGTGATCCA 59.094 45.455 11.06 0.00 44.74 3.41
161 162 3.055819 TGACTAAAGCACTGGAGTGATCC 60.056 47.826 11.06 0.00 44.74 3.36
162 163 4.193826 TGACTAAAGCACTGGAGTGATC 57.806 45.455 11.06 0.00 44.74 2.92
166 167 3.077359 GCAATGACTAAAGCACTGGAGT 58.923 45.455 0.00 0.00 0.00 3.85
167 168 3.341823 AGCAATGACTAAAGCACTGGAG 58.658 45.455 0.00 0.00 0.00 3.86
168 169 3.423539 AGCAATGACTAAAGCACTGGA 57.576 42.857 0.00 0.00 0.00 3.86
169 170 4.002982 TGTAGCAATGACTAAAGCACTGG 58.997 43.478 0.00 0.00 0.00 4.00
170 171 5.049474 TGTTGTAGCAATGACTAAAGCACTG 60.049 40.000 0.00 0.00 0.00 3.66
171 172 5.063204 TGTTGTAGCAATGACTAAAGCACT 58.937 37.500 0.00 0.00 0.00 4.40
172 173 5.356882 TGTTGTAGCAATGACTAAAGCAC 57.643 39.130 0.00 0.00 0.00 4.40
173 174 5.106197 CCATGTTGTAGCAATGACTAAAGCA 60.106 40.000 0.00 0.00 0.00 3.91
174 175 5.123820 TCCATGTTGTAGCAATGACTAAAGC 59.876 40.000 0.00 0.00 0.00 3.51
175 176 6.741992 TCCATGTTGTAGCAATGACTAAAG 57.258 37.500 0.00 0.00 0.00 1.85
176 177 6.404623 GCATCCATGTTGTAGCAATGACTAAA 60.405 38.462 0.00 0.00 0.00 1.85
177 178 5.066375 GCATCCATGTTGTAGCAATGACTAA 59.934 40.000 0.00 0.00 0.00 2.24
178 179 4.576053 GCATCCATGTTGTAGCAATGACTA 59.424 41.667 0.00 0.00 0.00 2.59
179 180 3.379372 GCATCCATGTTGTAGCAATGACT 59.621 43.478 0.00 0.00 0.00 3.41
180 181 3.129113 TGCATCCATGTTGTAGCAATGAC 59.871 43.478 0.00 0.00 0.00 3.06
181 182 3.354467 TGCATCCATGTTGTAGCAATGA 58.646 40.909 0.00 0.00 0.00 2.57
182 183 3.786516 TGCATCCATGTTGTAGCAATG 57.213 42.857 0.00 0.00 0.00 2.82
183 184 4.647853 AGAATGCATCCATGTTGTAGCAAT 59.352 37.500 0.00 0.00 35.45 3.56
184 185 4.018490 AGAATGCATCCATGTTGTAGCAA 58.982 39.130 0.00 0.00 35.45 3.91
185 186 3.623703 AGAATGCATCCATGTTGTAGCA 58.376 40.909 0.00 0.00 36.34 3.49
186 187 4.644103 AAGAATGCATCCATGTTGTAGC 57.356 40.909 0.00 0.00 0.00 3.58
187 188 7.274904 CAGAAAAAGAATGCATCCATGTTGTAG 59.725 37.037 0.00 0.00 0.00 2.74
188 189 7.092079 CAGAAAAAGAATGCATCCATGTTGTA 58.908 34.615 0.00 0.00 0.00 2.41
189 190 5.929992 CAGAAAAAGAATGCATCCATGTTGT 59.070 36.000 0.00 0.00 0.00 3.32
190 191 5.929992 ACAGAAAAAGAATGCATCCATGTTG 59.070 36.000 0.00 0.00 0.00 3.33
191 192 5.929992 CACAGAAAAAGAATGCATCCATGTT 59.070 36.000 0.00 0.00 0.00 2.71
192 193 5.011329 ACACAGAAAAAGAATGCATCCATGT 59.989 36.000 0.00 0.00 0.00 3.21
193 194 5.475719 ACACAGAAAAAGAATGCATCCATG 58.524 37.500 0.00 0.00 0.00 3.66
194 195 5.733620 ACACAGAAAAAGAATGCATCCAT 57.266 34.783 0.00 0.00 0.00 3.41
195 196 5.534207 AACACAGAAAAAGAATGCATCCA 57.466 34.783 0.00 0.00 0.00 3.41
196 197 8.538409 AATAAACACAGAAAAAGAATGCATCC 57.462 30.769 0.00 0.00 0.00 3.51
231 232 0.676466 TCTTTTCATCATGCCGCGGT 60.676 50.000 28.70 4.23 0.00 5.68
234 235 1.334419 CCGATCTTTTCATCATGCCGC 60.334 52.381 0.00 0.00 0.00 6.53
235 236 2.212652 TCCGATCTTTTCATCATGCCG 58.787 47.619 0.00 0.00 0.00 5.69
294 296 5.025986 TCGACGAATTTGTAAAGCTTTCC 57.974 39.130 16.57 4.59 0.00 3.13
303 305 4.270084 GCATCCATTCTCGACGAATTTGTA 59.730 41.667 0.00 0.00 40.33 2.41
306 308 3.063997 GTGCATCCATTCTCGACGAATTT 59.936 43.478 0.00 0.00 40.33 1.82
330 333 2.967887 AGCCCTGAAGAATTTGCAAACT 59.032 40.909 15.41 2.40 0.00 2.66
373 377 3.967326 TCTCTCTCCAGAAACCAGAAACA 59.033 43.478 0.00 0.00 0.00 2.83
374 378 4.282195 TCTCTCTCTCCAGAAACCAGAAAC 59.718 45.833 0.00 0.00 0.00 2.78
375 379 4.483950 TCTCTCTCTCCAGAAACCAGAAA 58.516 43.478 0.00 0.00 0.00 2.52
376 380 4.085733 CTCTCTCTCTCCAGAAACCAGAA 58.914 47.826 0.00 0.00 0.00 3.02
377 381 3.075283 ACTCTCTCTCTCCAGAAACCAGA 59.925 47.826 0.00 0.00 0.00 3.86
378 382 3.193267 CACTCTCTCTCTCCAGAAACCAG 59.807 52.174 0.00 0.00 0.00 4.00
379 383 3.161067 CACTCTCTCTCTCCAGAAACCA 58.839 50.000 0.00 0.00 0.00 3.67
380 384 3.426615 TCACTCTCTCTCTCCAGAAACC 58.573 50.000 0.00 0.00 0.00 3.27
409 417 1.835531 CCAACGTAGTACCCATCCCTT 59.164 52.381 0.00 0.00 45.00 3.95
601 627 3.434319 ACAGCTTCAATGCGGGCG 61.434 61.111 0.00 0.00 38.13 6.13
636 662 3.152341 CAAAGCAGTGGATCCAAAGAGT 58.848 45.455 18.20 0.00 0.00 3.24
637 663 2.094854 GCAAAGCAGTGGATCCAAAGAG 60.095 50.000 18.20 7.80 0.00 2.85
638 664 1.888512 GCAAAGCAGTGGATCCAAAGA 59.111 47.619 18.20 0.00 0.00 2.52
640 666 1.614903 CAGCAAAGCAGTGGATCCAAA 59.385 47.619 18.20 0.00 0.00 3.28
641 667 1.250328 CAGCAAAGCAGTGGATCCAA 58.750 50.000 18.20 0.00 0.00 3.53
642 668 0.609957 CCAGCAAAGCAGTGGATCCA 60.610 55.000 11.44 11.44 32.60 3.41
643 669 0.322816 TCCAGCAAAGCAGTGGATCC 60.323 55.000 4.20 4.20 35.36 3.36
760 832 1.672356 CTTGGAAGGCACGGACAGG 60.672 63.158 0.00 0.00 0.00 4.00
816 893 3.175152 CAGTGCTAGTGCTACTTCTTCG 58.825 50.000 0.00 0.00 40.48 3.79
817 894 2.926838 GCAGTGCTAGTGCTACTTCTTC 59.073 50.000 8.18 0.00 41.22 2.87
818 895 2.300152 TGCAGTGCTAGTGCTACTTCTT 59.700 45.455 17.60 0.00 44.61 2.52
819 896 1.895798 TGCAGTGCTAGTGCTACTTCT 59.104 47.619 17.60 0.00 44.61 2.85
822 899 3.340814 AAATGCAGTGCTAGTGCTACT 57.659 42.857 17.60 0.00 44.61 2.57
823 900 3.436704 TGAAAATGCAGTGCTAGTGCTAC 59.563 43.478 17.60 1.45 44.61 3.58
824 901 3.436704 GTGAAAATGCAGTGCTAGTGCTA 59.563 43.478 17.60 0.00 44.61 3.49
825 902 2.227388 GTGAAAATGCAGTGCTAGTGCT 59.773 45.455 17.60 0.00 44.61 4.40
826 903 2.030893 TGTGAAAATGCAGTGCTAGTGC 60.031 45.455 17.60 8.48 44.57 4.40
827 904 3.902261 TGTGAAAATGCAGTGCTAGTG 57.098 42.857 17.60 0.00 0.00 2.74
828 905 4.082571 GGATTGTGAAAATGCAGTGCTAGT 60.083 41.667 17.60 0.00 0.00 2.57
829 906 4.082625 TGGATTGTGAAAATGCAGTGCTAG 60.083 41.667 17.60 0.00 0.00 3.42
905 982 4.037446 TGCGCTTGATTTAGGAAACAACTT 59.963 37.500 9.73 0.00 0.00 2.66
911 988 4.941263 ACATACTGCGCTTGATTTAGGAAA 59.059 37.500 9.73 0.00 0.00 3.13
958 1063 1.200716 CTGCACCACATTCACATCCAC 59.799 52.381 0.00 0.00 0.00 4.02
1312 1460 6.687081 ACAATCTGCTGAGTACTACTACTC 57.313 41.667 0.00 3.34 46.56 2.59
1317 1465 9.058174 TCTAATCTACAATCTGCTGAGTACTAC 57.942 37.037 0.00 0.00 0.00 2.73
1318 1466 9.278978 CTCTAATCTACAATCTGCTGAGTACTA 57.721 37.037 0.00 0.00 0.00 1.82
1319 1467 7.255451 GCTCTAATCTACAATCTGCTGAGTACT 60.255 40.741 0.00 0.00 0.00 2.73
1360 1508 7.867752 AGAACTAAATCACTACTAGCTCGATC 58.132 38.462 0.00 0.00 0.00 3.69
1361 1509 7.811117 AGAACTAAATCACTACTAGCTCGAT 57.189 36.000 0.00 0.00 0.00 3.59
1362 1510 7.986320 AGTAGAACTAAATCACTACTAGCTCGA 59.014 37.037 0.00 0.00 42.09 4.04
1363 1511 8.145316 AGTAGAACTAAATCACTACTAGCTCG 57.855 38.462 0.00 0.00 42.09 5.03
1395 1553 5.582665 CACTACCACTTCCTCTTGCTAAATC 59.417 44.000 0.00 0.00 0.00 2.17
1396 1554 5.248477 TCACTACCACTTCCTCTTGCTAAAT 59.752 40.000 0.00 0.00 0.00 1.40
1403 1561 2.237392 GCCATCACTACCACTTCCTCTT 59.763 50.000 0.00 0.00 0.00 2.85
1413 1571 0.598680 CGCTAGCTGCCATCACTACC 60.599 60.000 13.93 0.00 38.78 3.18
1465 1627 0.749649 AACAAGAAATGGCGCCACAA 59.250 45.000 35.50 10.08 0.00 3.33
1508 1675 1.003851 TACGCTACGTACGTACCCAC 58.996 55.000 23.60 12.30 44.55 4.61
1529 1702 6.536582 CCATCTTTCATGTTACTGGTAGTCTG 59.463 42.308 0.00 0.00 0.00 3.51
1550 1754 5.229469 CAGTACTCGAATAACGTGAACCATC 59.771 44.000 0.00 0.00 43.13 3.51
1551 1755 5.100259 CAGTACTCGAATAACGTGAACCAT 58.900 41.667 0.00 0.00 43.13 3.55
1552 1756 4.478699 CAGTACTCGAATAACGTGAACCA 58.521 43.478 0.00 0.00 43.13 3.67
1553 1757 3.855950 CCAGTACTCGAATAACGTGAACC 59.144 47.826 0.00 0.00 43.13 3.62
1554 1758 3.302699 GCCAGTACTCGAATAACGTGAAC 59.697 47.826 0.00 0.00 43.13 3.18
1555 1759 3.504863 GCCAGTACTCGAATAACGTGAA 58.495 45.455 0.00 0.00 43.13 3.18
1556 1760 2.476686 CGCCAGTACTCGAATAACGTGA 60.477 50.000 0.00 0.00 43.13 4.35
1557 1761 1.844357 CGCCAGTACTCGAATAACGTG 59.156 52.381 0.00 0.00 43.13 4.49
1558 1762 1.739466 TCGCCAGTACTCGAATAACGT 59.261 47.619 4.33 0.00 43.13 3.99
1559 1763 2.463553 TCGCCAGTACTCGAATAACG 57.536 50.000 4.33 0.00 44.09 3.18
1560 1764 5.519206 AGATTTTCGCCAGTACTCGAATAAC 59.481 40.000 17.13 12.31 43.09 1.89
1561 1765 5.518847 CAGATTTTCGCCAGTACTCGAATAA 59.481 40.000 17.13 14.29 43.09 1.40
1562 1766 5.041287 CAGATTTTCGCCAGTACTCGAATA 58.959 41.667 17.13 13.74 43.09 1.75
1563 1767 3.865745 CAGATTTTCGCCAGTACTCGAAT 59.134 43.478 17.13 6.43 43.09 3.34
1564 1768 3.250744 CAGATTTTCGCCAGTACTCGAA 58.749 45.455 13.62 13.62 42.11 3.71
1565 1769 2.876091 CAGATTTTCGCCAGTACTCGA 58.124 47.619 2.76 2.76 0.00 4.04
1566 1770 1.324736 GCAGATTTTCGCCAGTACTCG 59.675 52.381 0.00 0.00 0.00 4.18
1567 1771 2.346803 TGCAGATTTTCGCCAGTACTC 58.653 47.619 0.00 0.00 0.00 2.59
1568 1772 2.289694 ACTGCAGATTTTCGCCAGTACT 60.290 45.455 23.35 0.00 33.26 2.73
1569 1773 2.076863 ACTGCAGATTTTCGCCAGTAC 58.923 47.619 23.35 0.00 33.26 2.73
1570 1774 2.472695 ACTGCAGATTTTCGCCAGTA 57.527 45.000 23.35 0.00 33.26 2.74
1571 1775 1.609208 AACTGCAGATTTTCGCCAGT 58.391 45.000 23.35 0.00 35.31 4.00
1572 1776 2.712057 AAACTGCAGATTTTCGCCAG 57.288 45.000 23.35 0.00 0.00 4.85
1573 1777 4.022416 ACATTAAACTGCAGATTTTCGCCA 60.022 37.500 23.35 0.00 0.00 5.69
1574 1778 4.324402 CACATTAAACTGCAGATTTTCGCC 59.676 41.667 23.35 0.00 0.00 5.54
1575 1779 5.153513 TCACATTAAACTGCAGATTTTCGC 58.846 37.500 23.35 0.00 0.00 4.70
1576 1780 6.636447 TGTTCACATTAAACTGCAGATTTTCG 59.364 34.615 23.35 8.87 0.00 3.46
1577 1781 7.928908 TGTTCACATTAAACTGCAGATTTTC 57.071 32.000 23.35 0.00 0.00 2.29
1578 1782 8.891671 ATTGTTCACATTAAACTGCAGATTTT 57.108 26.923 23.35 14.01 0.00 1.82
1579 1783 8.891671 AATTGTTCACATTAAACTGCAGATTT 57.108 26.923 23.35 18.30 0.00 2.17
1580 1784 9.630098 CTAATTGTTCACATTAAACTGCAGATT 57.370 29.630 23.35 18.24 0.00 2.40
1586 1790 8.500837 TTTCGCTAATTGTTCACATTAAACTG 57.499 30.769 0.00 0.00 0.00 3.16
1605 1809 8.169268 CGTATTTGTAAAAGAGAGATTTTCGCT 58.831 33.333 0.00 0.00 37.57 4.93
1628 1832 3.372660 TTGCATATACATCACGCCGTA 57.627 42.857 0.00 0.00 0.00 4.02
1679 1883 2.155279 GGAGCCTCACTTTCTGAAACC 58.845 52.381 0.00 0.00 0.00 3.27
1684 1888 1.338579 GGTCAGGAGCCTCACTTTCTG 60.339 57.143 0.00 0.00 33.70 3.02
1691 1895 1.860641 TATTTCGGTCAGGAGCCTCA 58.139 50.000 0.00 0.00 0.00 3.86
1719 1923 2.974698 AGTCCGCAAGTGCAGCAC 60.975 61.111 18.55 18.55 42.21 4.40
1724 1928 2.970974 GCCTTCAGTCCGCAAGTGC 61.971 63.158 0.00 0.00 37.78 4.40
1730 1934 0.178068 TCCTTATGCCTTCAGTCCGC 59.822 55.000 0.00 0.00 0.00 5.54
1743 1947 6.349300 ACTTTGCGTGTAGATGATTCCTTAT 58.651 36.000 0.00 0.00 0.00 1.73
1745 1949 4.579869 ACTTTGCGTGTAGATGATTCCTT 58.420 39.130 0.00 0.00 0.00 3.36
1746 1950 4.207891 ACTTTGCGTGTAGATGATTCCT 57.792 40.909 0.00 0.00 0.00 3.36
1747 1951 4.946784 AACTTTGCGTGTAGATGATTCC 57.053 40.909 0.00 0.00 0.00 3.01
1776 1980 1.812571 AGCTTATGCCTTCGTTTGTGG 59.187 47.619 0.00 0.00 40.80 4.17
1778 1982 3.857010 GCAAAGCTTATGCCTTCGTTTGT 60.857 43.478 17.56 0.00 40.80 2.83
1779 1983 2.663119 GCAAAGCTTATGCCTTCGTTTG 59.337 45.455 17.56 3.01 40.80 2.93
1780 1984 2.946564 GCAAAGCTTATGCCTTCGTTT 58.053 42.857 17.56 0.00 40.80 3.60
1781 1985 2.636768 GCAAAGCTTATGCCTTCGTT 57.363 45.000 17.56 0.00 40.80 3.85
1823 2071 7.007723 TGGGTGGTGTAACAAATTCTATTCTT 58.992 34.615 0.00 0.00 39.98 2.52
1832 2080 5.066764 GCGTAATATGGGTGGTGTAACAAAT 59.933 40.000 0.00 0.00 39.98 2.32
1920 2172 2.037121 TGATGTGGCAGAACGAGAGAAA 59.963 45.455 0.00 0.00 0.00 2.52
1927 2179 2.401766 GGGCTGATGTGGCAGAACG 61.402 63.158 0.00 0.00 38.14 3.95
1949 2201 3.074412 CAAGTGTTACGGAAAGGATGCT 58.926 45.455 0.00 0.00 0.00 3.79
2012 2303 1.380524 CGGTCGGAGTGTGAGATAGT 58.619 55.000 0.00 0.00 0.00 2.12
2013 2304 0.029567 GCGGTCGGAGTGTGAGATAG 59.970 60.000 0.00 0.00 0.00 2.08
2014 2305 1.381928 GGCGGTCGGAGTGTGAGATA 61.382 60.000 0.00 0.00 0.00 1.98
2024 2315 3.547054 AAATTTACTATGGCGGTCGGA 57.453 42.857 0.00 0.00 0.00 4.55
2047 2338 3.991536 GAGAGTTGGGAGCGGCGAC 62.992 68.421 12.98 3.05 0.00 5.19
2050 2341 2.185608 GAGAGAGTTGGGAGCGGC 59.814 66.667 0.00 0.00 0.00 6.53
2056 2347 1.213013 CGTGACGGAGAGAGTTGGG 59.787 63.158 0.00 0.00 0.00 4.12
2065 2356 3.036783 GAGGACGGTCGTGACGGAG 62.037 68.421 8.23 0.00 35.84 4.63
2075 2366 2.190756 GTCAATCGGAGAGGACGGT 58.809 57.895 0.00 0.00 43.63 4.83
2121 2412 2.740826 TGCGTTTACTGCTCGGCC 60.741 61.111 0.00 0.00 0.00 6.13
2131 2422 0.663688 AACAACATGCCGTGCGTTTA 59.336 45.000 0.00 0.00 0.00 2.01
2132 2423 0.869454 CAACAACATGCCGTGCGTTT 60.869 50.000 0.00 0.00 0.00 3.60
2133 2424 1.299014 CAACAACATGCCGTGCGTT 60.299 52.632 0.00 0.00 0.00 4.84
2172 2463 0.898320 ACGGTGATGGAGAGAGTTGG 59.102 55.000 0.00 0.00 0.00 3.77
2194 2485 2.743718 CCACCAAGAGGACAGCGT 59.256 61.111 0.00 0.00 38.69 5.07
2198 2489 2.121963 AGGCCCACCAAGAGGACA 60.122 61.111 0.00 0.00 39.06 4.02
2204 2495 0.183731 GGATAAGGAGGCCCACCAAG 59.816 60.000 17.23 0.00 39.06 3.61
2205 2496 0.551377 TGGATAAGGAGGCCCACCAA 60.551 55.000 17.23 6.71 39.06 3.67
2206 2497 0.328450 ATGGATAAGGAGGCCCACCA 60.328 55.000 17.23 8.93 39.06 4.17
2208 2499 1.202940 GGAATGGATAAGGAGGCCCAC 60.203 57.143 0.00 0.00 33.88 4.61
2209 2500 1.149101 GGAATGGATAAGGAGGCCCA 58.851 55.000 0.00 0.00 33.88 5.36
2210 2501 1.352687 GAGGAATGGATAAGGAGGCCC 59.647 57.143 0.00 0.00 0.00 5.80
2211 2502 2.343625 AGAGGAATGGATAAGGAGGCC 58.656 52.381 0.00 0.00 0.00 5.19
2212 2503 3.650461 AGAAGAGGAATGGATAAGGAGGC 59.350 47.826 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.