Multiple sequence alignment - TraesCS6B01G408300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G408300 chr6B 100.000 4831 0 0 1 4831 682559420 682564250 0.000000e+00 8922.0
1 TraesCS6B01G408300 chr6B 92.530 415 26 3 1326 1737 591787470 591787058 1.500000e-164 590.0
2 TraesCS6B01G408300 chr6B 91.587 416 30 3 1326 1738 42693887 42694300 1.950000e-158 569.0
3 TraesCS6B01G408300 chr6B 91.587 416 30 3 1326 1738 83635686 83635273 1.950000e-158 569.0
4 TraesCS6B01G408300 chr6B 97.222 144 4 0 2164 2307 682561516 682561659 1.340000e-60 244.0
5 TraesCS6B01G408300 chr6B 97.222 144 4 0 2097 2240 682561583 682561726 1.340000e-60 244.0
6 TraesCS6B01G408300 chr6B 94.805 77 4 0 2231 2307 682561516 682561592 2.360000e-23 121.0
7 TraesCS6B01G408300 chr6B 94.805 77 4 0 2097 2173 682561650 682561726 2.360000e-23 121.0
8 TraesCS6B01G408300 chr6D 90.424 1650 103 29 560 2173 450110100 450111730 0.000000e+00 2121.0
9 TraesCS6B01G408300 chr6D 90.754 1287 92 18 2928 4205 450112318 450113586 0.000000e+00 1692.0
10 TraesCS6B01G408300 chr6D 95.308 682 29 3 2231 2910 450111653 450112333 0.000000e+00 1079.0
11 TraesCS6B01G408300 chr6D 96.421 503 17 1 1 503 450109617 450110118 0.000000e+00 828.0
12 TraesCS6B01G408300 chr6D 87.836 633 55 12 4202 4829 450113621 450114236 0.000000e+00 723.0
13 TraesCS6B01G408300 chr6D 94.872 78 3 1 2164 2240 450111653 450111730 2.360000e-23 121.0
14 TraesCS6B01G408300 chr6A 89.666 1645 100 32 575 2173 595624540 595626160 0.000000e+00 2032.0
15 TraesCS6B01G408300 chr6A 89.256 1089 85 22 2928 4012 595626750 595627810 0.000000e+00 1334.0
16 TraesCS6B01G408300 chr6A 94.876 683 31 4 2231 2910 595626084 595626765 0.000000e+00 1064.0
17 TraesCS6B01G408300 chr6A 88.587 552 49 8 4283 4829 595627968 595628510 0.000000e+00 658.0
18 TraesCS6B01G408300 chr6A 85.124 484 47 11 1 477 595624047 595624512 5.660000e-129 472.0
19 TraesCS6B01G408300 chr6A 94.805 77 4 0 2164 2240 595626084 595626160 2.360000e-23 121.0
20 TraesCS6B01G408300 chr4B 87.897 661 55 12 1100 1738 591213179 591213836 0.000000e+00 754.0
21 TraesCS6B01G408300 chr4A 87.439 613 51 11 1150 1738 731452997 731452387 0.000000e+00 682.0
22 TraesCS6B01G408300 chr4A 84.350 377 33 10 1100 1452 699840426 699840800 3.580000e-91 346.0
23 TraesCS6B01G408300 chr4A 93.220 59 4 0 509 567 733934453 733934395 2.400000e-13 87.9
24 TraesCS6B01G408300 chr1B 91.827 416 29 3 1326 1738 62849310 62848897 4.190000e-160 575.0
25 TraesCS6B01G408300 chr1B 91.827 416 29 3 1326 1738 585229313 585228900 4.190000e-160 575.0
26 TraesCS6B01G408300 chr1B 91.587 416 30 3 1326 1738 671753600 671753187 1.950000e-158 569.0
27 TraesCS6B01G408300 chr7A 91.587 416 30 3 1326 1738 38147679 38148092 1.950000e-158 569.0
28 TraesCS6B01G408300 chr7B 84.574 564 53 13 1165 1696 18364868 18364307 3.310000e-146 529.0
29 TraesCS6B01G408300 chr5B 84.350 377 33 10 1100 1452 34585904 34585530 3.580000e-91 346.0
30 TraesCS6B01G408300 chr3B 98.246 57 1 0 504 560 422559673 422559729 3.080000e-17 100.0
31 TraesCS6B01G408300 chr5A 96.552 58 2 0 503 560 539904712 539904655 3.980000e-16 97.1
32 TraesCS6B01G408300 chr3A 98.182 55 1 0 504 558 32127569 32127515 3.980000e-16 97.1
33 TraesCS6B01G408300 chr2A 94.737 57 3 0 504 560 10724482 10724426 6.660000e-14 89.8
34 TraesCS6B01G408300 chr7D 94.545 55 2 1 504 558 192366903 192366850 3.100000e-12 84.2
35 TraesCS6B01G408300 chr2B 91.228 57 3 2 504 560 13918089 13918143 5.180000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G408300 chr6B 682559420 682564250 4830 False 1930.400000 8922 96.810800 1 4831 5 chr6B.!!$F2 4830
1 TraesCS6B01G408300 chr6D 450109617 450114236 4619 False 1094.000000 2121 92.602500 1 4829 6 chr6D.!!$F1 4828
2 TraesCS6B01G408300 chr6A 595624047 595628510 4463 False 946.833333 2032 90.385667 1 4829 6 chr6A.!!$F1 4828
3 TraesCS6B01G408300 chr4B 591213179 591213836 657 False 754.000000 754 87.897000 1100 1738 1 chr4B.!!$F1 638
4 TraesCS6B01G408300 chr4A 731452387 731452997 610 True 682.000000 682 87.439000 1150 1738 1 chr4A.!!$R1 588
5 TraesCS6B01G408300 chr7B 18364307 18364868 561 True 529.000000 529 84.574000 1165 1696 1 chr7B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 940 0.035152 CTGCAGTATTGGCCCACTGA 60.035 55.0 25.43 13.63 43.99 3.41 F
1368 1431 0.478072 TGGTGGTTTGCTCTGATGGT 59.522 50.0 0.00 0.00 0.00 3.55 F
2230 2295 0.962356 ATCCTTGCAGCTTCAACCCG 60.962 55.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2343 0.112995 TGGGTTGAAGCTGCAAGGAT 59.887 50.0 7.6 0.00 0.00 3.24 R
2280 2345 0.971386 AATGGGTTGAAGCTGCAAGG 59.029 50.0 7.6 0.00 0.00 3.61 R
3952 4022 0.247655 CATACACGAGCGCGCAATTT 60.248 50.0 35.1 13.12 42.48 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 137 4.640771 TCATTACCATATGCTCCCTTCC 57.359 45.455 0.00 0.00 0.00 3.46
176 183 4.699637 ACGAAACACACTCTGGTAATTCA 58.300 39.130 0.00 0.00 0.00 2.57
184 191 4.080129 ACACTCTGGTAATTCATGGCATCT 60.080 41.667 0.00 0.00 0.00 2.90
203 210 4.073293 TCTCTCTGTTCTTTGTTGGTCC 57.927 45.455 0.00 0.00 0.00 4.46
234 241 3.380637 ACCGATCTCGTGTATTTACTGCT 59.619 43.478 0.00 0.00 37.74 4.24
291 298 1.973281 CCCATCTTGTTGGCGCTGT 60.973 57.895 7.64 0.00 35.29 4.40
393 400 0.250467 CAGGACAGTTGAGGTGGTGG 60.250 60.000 0.00 0.00 0.00 4.61
495 502 4.647424 TTTTTGGGCAGTTAAGAGTGTG 57.353 40.909 0.00 0.00 0.00 3.82
496 503 1.604604 TTGGGCAGTTAAGAGTGTGC 58.395 50.000 0.00 0.00 35.07 4.57
497 504 0.764890 TGGGCAGTTAAGAGTGTGCT 59.235 50.000 0.00 0.00 36.15 4.40
498 505 1.974957 TGGGCAGTTAAGAGTGTGCTA 59.025 47.619 0.00 0.00 36.15 3.49
499 506 2.370519 TGGGCAGTTAAGAGTGTGCTAA 59.629 45.455 0.00 0.00 36.15 3.09
500 507 2.742589 GGGCAGTTAAGAGTGTGCTAAC 59.257 50.000 0.00 0.00 36.15 2.34
501 508 3.557264 GGGCAGTTAAGAGTGTGCTAACT 60.557 47.826 0.00 0.00 36.15 2.24
502 509 3.680458 GGCAGTTAAGAGTGTGCTAACTC 59.320 47.826 10.36 10.36 45.82 3.01
543 550 9.485591 TCGAAACTTTATTTCTCAAATAATCGC 57.514 29.630 13.00 0.00 41.51 4.58
544 551 9.272901 CGAAACTTTATTTCTCAAATAATCGCA 57.727 29.630 8.43 0.00 41.51 5.10
547 554 9.573133 AACTTTATTTCTCAAATAATCGCAAGG 57.427 29.630 2.97 0.00 41.51 3.61
548 555 8.739972 ACTTTATTTCTCAAATAATCGCAAGGT 58.260 29.630 2.97 0.00 41.51 3.50
549 556 9.226345 CTTTATTTCTCAAATAATCGCAAGGTC 57.774 33.333 2.97 0.00 41.51 3.85
550 557 6.757897 ATTTCTCAAATAATCGCAAGGTCA 57.242 33.333 0.00 0.00 38.47 4.02
551 558 6.757897 TTTCTCAAATAATCGCAAGGTCAT 57.242 33.333 0.00 0.00 38.47 3.06
552 559 6.757897 TTCTCAAATAATCGCAAGGTCATT 57.242 33.333 0.00 0.00 38.47 2.57
553 560 6.757897 TCTCAAATAATCGCAAGGTCATTT 57.242 33.333 0.00 0.00 24.57 2.32
554 561 7.857734 TCTCAAATAATCGCAAGGTCATTTA 57.142 32.000 0.00 0.00 23.98 1.40
555 562 7.693952 TCTCAAATAATCGCAAGGTCATTTAC 58.306 34.615 0.00 0.00 23.98 2.01
556 563 7.335673 TCTCAAATAATCGCAAGGTCATTTACA 59.664 33.333 0.00 0.00 23.98 2.41
557 564 7.821652 TCAAATAATCGCAAGGTCATTTACAA 58.178 30.769 0.00 0.00 23.98 2.41
558 565 7.967854 TCAAATAATCGCAAGGTCATTTACAAG 59.032 33.333 0.00 0.00 23.98 3.16
698 705 6.564328 CAAATAAAACCCAGATGCTTAGACC 58.436 40.000 0.00 0.00 0.00 3.85
704 711 3.780294 ACCCAGATGCTTAGACCACATTA 59.220 43.478 0.00 0.00 0.00 1.90
744 751 4.323715 GGTGGATCCATTCATTTGCCTTTT 60.324 41.667 19.62 0.00 35.97 2.27
786 795 4.326826 TGGCTGTTTTTCTGAGTAGATGG 58.673 43.478 0.00 0.00 31.81 3.51
920 932 3.668447 AGTGACAGAACTGCAGTATTGG 58.332 45.455 22.01 12.58 0.00 3.16
928 940 0.035152 CTGCAGTATTGGCCCACTGA 60.035 55.000 25.43 13.63 43.99 3.41
930 942 1.202989 TGCAGTATTGGCCCACTGAAA 60.203 47.619 25.43 13.95 43.99 2.69
948 960 7.360438 CCACTGAAATTACTTCTTGAGCTACAC 60.360 40.741 0.00 0.00 34.86 2.90
1016 1033 4.862447 CATGCCGCTGCTAGCCCA 62.862 66.667 13.29 2.00 38.18 5.36
1018 1035 3.643595 ATGCCGCTGCTAGCCCAAA 62.644 57.895 13.29 0.00 38.18 3.28
1020 1037 2.045926 CCGCTGCTAGCCCAAACT 60.046 61.111 13.29 0.00 38.18 2.66
1032 1049 2.109304 AGCCCAAACTGCTAAAACCCTA 59.891 45.455 0.00 0.00 37.28 3.53
1291 1317 1.677217 CCCCTCTGCTTTGCTACTGTC 60.677 57.143 0.00 0.00 0.00 3.51
1302 1339 1.890489 TGCTACTGTCCGTGTGTATGT 59.110 47.619 0.00 0.00 0.00 2.29
1310 1347 3.240069 GTCCGTGTGTATGTACTGTGTC 58.760 50.000 0.00 0.00 0.00 3.67
1317 1377 5.050363 GTGTGTATGTACTGTGTCTGTTTGG 60.050 44.000 0.00 0.00 0.00 3.28
1323 1383 5.620206 TGTACTGTGTCTGTTTGGATGAAT 58.380 37.500 0.00 0.00 0.00 2.57
1357 1420 1.421646 AGCTTAGCTCACTGGTGGTTT 59.578 47.619 0.00 0.00 30.62 3.27
1358 1421 1.537202 GCTTAGCTCACTGGTGGTTTG 59.463 52.381 0.00 0.00 0.00 2.93
1359 1422 1.537202 CTTAGCTCACTGGTGGTTTGC 59.463 52.381 0.00 1.94 0.00 3.68
1360 1423 0.764890 TAGCTCACTGGTGGTTTGCT 59.235 50.000 0.00 8.24 37.55 3.91
1361 1424 0.536006 AGCTCACTGGTGGTTTGCTC 60.536 55.000 0.70 0.00 31.39 4.26
1362 1425 0.536006 GCTCACTGGTGGTTTGCTCT 60.536 55.000 0.70 0.00 0.00 4.09
1364 1427 0.836606 TCACTGGTGGTTTGCTCTGA 59.163 50.000 0.70 0.00 0.00 3.27
1365 1428 1.421268 TCACTGGTGGTTTGCTCTGAT 59.579 47.619 0.70 0.00 0.00 2.90
1367 1430 1.171308 CTGGTGGTTTGCTCTGATGG 58.829 55.000 0.00 0.00 0.00 3.51
1368 1431 0.478072 TGGTGGTTTGCTCTGATGGT 59.522 50.000 0.00 0.00 0.00 3.55
1398 1461 2.586792 GAGAACGCCTGCAGGGAT 59.413 61.111 33.46 18.12 37.23 3.85
1414 1477 1.361993 GATGACGAGGAGATGCGCT 59.638 57.895 9.73 0.00 0.00 5.92
1476 1539 1.676006 CAGAGGGTGCGTTTTTCTGTT 59.324 47.619 0.00 0.00 32.60 3.16
1481 1544 4.426416 AGGGTGCGTTTTTCTGTTAAAAC 58.574 39.130 0.00 0.00 42.04 2.43
1705 1769 8.236586 TGAACACACATGTATTTTTATCTGCTC 58.763 33.333 0.00 0.00 38.45 4.26
1748 1812 3.875727 GTGATTCTGGACCAGATGATGTG 59.124 47.826 24.85 0.00 40.39 3.21
1764 1828 2.741759 TGTGCTTCAATCAGTAGCGA 57.258 45.000 0.00 0.00 42.93 4.93
1765 1829 2.610433 TGTGCTTCAATCAGTAGCGAG 58.390 47.619 0.00 0.00 42.93 5.03
1811 1875 6.310149 TGCTCTCTCTGTATCCATGATTCTA 58.690 40.000 0.00 0.00 0.00 2.10
1871 1935 9.691362 GAAATAATAATAACACGGCATTTCCAT 57.309 29.630 0.00 0.00 34.01 3.41
1872 1936 9.474920 AAATAATAATAACACGGCATTTCCATG 57.525 29.630 0.00 0.00 33.41 3.66
1881 1945 2.480073 CGGCATTTCCATGAACATCCAC 60.480 50.000 0.00 0.00 31.07 4.02
1909 1973 5.581874 CCAAAACAACTTCTGCTTTCAATGT 59.418 36.000 0.00 0.00 0.00 2.71
1922 1986 8.271458 TCTGCTTTCAATGTAGTATTTCCCATA 58.729 33.333 0.00 0.00 0.00 2.74
1940 2004 4.414852 CCATATTTCAAACTGAGGCAACG 58.585 43.478 0.00 0.00 46.39 4.10
1949 2013 3.340814 ACTGAGGCAACGATCTGAATT 57.659 42.857 0.00 0.00 46.39 2.17
1954 2018 1.818674 GGCAACGATCTGAATTTGGGT 59.181 47.619 0.00 0.00 0.00 4.51
1968 2032 6.422333 TGAATTTGGGTCACTCTAATGCATA 58.578 36.000 0.00 0.00 0.00 3.14
2009 2073 6.093219 AGCTAAGTTAGACATCAACATTGCAG 59.907 38.462 14.27 0.00 31.10 4.41
2023 2087 3.569701 ACATTGCAGAGACGGTTGATTTT 59.430 39.130 0.00 0.00 0.00 1.82
2067 2131 9.466497 AGTACACAAAAGGTTGATATGATGATT 57.534 29.630 0.00 0.00 38.20 2.57
2069 2133 8.125978 ACACAAAAGGTTGATATGATGATTGT 57.874 30.769 0.00 0.00 38.20 2.71
2070 2134 8.587608 ACACAAAAGGTTGATATGATGATTGTT 58.412 29.630 0.00 0.00 38.20 2.83
2086 2150 6.258230 TGATTGTTGTGAAAGCAATAGGAG 57.742 37.500 0.00 0.00 33.56 3.69
2087 2151 4.503741 TTGTTGTGAAAGCAATAGGAGC 57.496 40.909 0.00 0.00 0.00 4.70
2173 2238 2.228822 AGCTTCAACCCGTTAAATGCTG 59.771 45.455 0.00 0.00 0.00 4.41
2174 2239 2.030274 GCTTCAACCCGTTAAATGCTGT 60.030 45.455 0.00 0.00 0.00 4.40
2175 2240 3.564511 CTTCAACCCGTTAAATGCTGTG 58.435 45.455 0.00 0.00 0.00 3.66
2176 2241 1.883275 TCAACCCGTTAAATGCTGTGG 59.117 47.619 0.00 0.00 0.00 4.17
2177 2242 1.883275 CAACCCGTTAAATGCTGTGGA 59.117 47.619 0.00 0.00 0.00 4.02
2178 2243 1.821216 ACCCGTTAAATGCTGTGGAG 58.179 50.000 0.00 0.00 0.00 3.86
2179 2244 1.073284 ACCCGTTAAATGCTGTGGAGT 59.927 47.619 0.00 0.00 0.00 3.85
2180 2245 1.737793 CCCGTTAAATGCTGTGGAGTC 59.262 52.381 0.00 0.00 0.00 3.36
2181 2246 2.615493 CCCGTTAAATGCTGTGGAGTCT 60.615 50.000 0.00 0.00 0.00 3.24
2182 2247 3.074412 CCGTTAAATGCTGTGGAGTCTT 58.926 45.455 0.00 0.00 0.00 3.01
2183 2248 4.250464 CCGTTAAATGCTGTGGAGTCTTA 58.750 43.478 0.00 0.00 0.00 2.10
2184 2249 4.876107 CCGTTAAATGCTGTGGAGTCTTAT 59.124 41.667 0.00 0.00 0.00 1.73
2185 2250 5.220662 CCGTTAAATGCTGTGGAGTCTTATG 60.221 44.000 0.00 0.00 0.00 1.90
2186 2251 5.580691 CGTTAAATGCTGTGGAGTCTTATGA 59.419 40.000 0.00 0.00 0.00 2.15
2187 2252 6.092122 CGTTAAATGCTGTGGAGTCTTATGAA 59.908 38.462 0.00 0.00 0.00 2.57
2188 2253 5.886960 AAATGCTGTGGAGTCTTATGAAC 57.113 39.130 0.00 0.00 0.00 3.18
2189 2254 4.833478 ATGCTGTGGAGTCTTATGAACT 57.167 40.909 0.00 0.00 0.00 3.01
2190 2255 4.193826 TGCTGTGGAGTCTTATGAACTC 57.806 45.455 0.00 0.00 0.00 3.01
2191 2256 3.834813 TGCTGTGGAGTCTTATGAACTCT 59.165 43.478 3.55 0.00 0.00 3.24
2192 2257 4.180057 GCTGTGGAGTCTTATGAACTCTG 58.820 47.826 3.55 0.00 0.00 3.35
2193 2258 4.081972 GCTGTGGAGTCTTATGAACTCTGA 60.082 45.833 3.55 0.00 0.00 3.27
2194 2259 5.567623 GCTGTGGAGTCTTATGAACTCTGAA 60.568 44.000 3.55 0.00 0.00 3.02
2195 2260 6.611613 TGTGGAGTCTTATGAACTCTGAAT 57.388 37.500 3.55 0.00 0.00 2.57
2196 2261 6.634805 TGTGGAGTCTTATGAACTCTGAATC 58.365 40.000 3.55 0.00 0.00 2.52
2197 2262 6.438741 TGTGGAGTCTTATGAACTCTGAATCT 59.561 38.462 3.55 0.00 0.00 2.40
2198 2263 6.978080 GTGGAGTCTTATGAACTCTGAATCTC 59.022 42.308 3.55 0.00 0.00 2.75
2199 2264 6.665248 TGGAGTCTTATGAACTCTGAATCTCA 59.335 38.462 3.55 0.00 0.00 3.27
2200 2265 7.344093 TGGAGTCTTATGAACTCTGAATCTCAT 59.656 37.037 3.55 0.00 33.26 2.90
2201 2266 8.203485 GGAGTCTTATGAACTCTGAATCTCATT 58.797 37.037 3.55 0.00 31.20 2.57
2202 2267 9.598517 GAGTCTTATGAACTCTGAATCTCATTT 57.401 33.333 0.00 0.00 31.20 2.32
2210 2275 9.730705 TGAACTCTGAATCTCATTTATCTTTGT 57.269 29.630 0.00 0.00 0.00 2.83
2218 2283 9.890352 GAATCTCATTTATCTTTGTATCCTTGC 57.110 33.333 0.00 0.00 0.00 4.01
2219 2284 8.985315 ATCTCATTTATCTTTGTATCCTTGCA 57.015 30.769 0.00 0.00 0.00 4.08
2220 2285 8.442632 TCTCATTTATCTTTGTATCCTTGCAG 57.557 34.615 0.00 0.00 0.00 4.41
2221 2286 7.012704 TCTCATTTATCTTTGTATCCTTGCAGC 59.987 37.037 0.00 0.00 0.00 5.25
2222 2287 6.830324 TCATTTATCTTTGTATCCTTGCAGCT 59.170 34.615 0.00 0.00 0.00 4.24
2223 2288 7.340232 TCATTTATCTTTGTATCCTTGCAGCTT 59.660 33.333 0.00 0.00 0.00 3.74
2224 2289 6.683974 TTATCTTTGTATCCTTGCAGCTTC 57.316 37.500 0.00 0.00 0.00 3.86
2225 2290 4.019792 TCTTTGTATCCTTGCAGCTTCA 57.980 40.909 0.00 0.00 0.00 3.02
2226 2291 4.397420 TCTTTGTATCCTTGCAGCTTCAA 58.603 39.130 0.00 0.00 0.00 2.69
2227 2292 4.216257 TCTTTGTATCCTTGCAGCTTCAAC 59.784 41.667 0.00 0.00 0.00 3.18
2228 2293 2.436417 TGTATCCTTGCAGCTTCAACC 58.564 47.619 0.00 0.00 0.00 3.77
2229 2294 1.745653 GTATCCTTGCAGCTTCAACCC 59.254 52.381 0.00 0.00 0.00 4.11
2230 2295 0.962356 ATCCTTGCAGCTTCAACCCG 60.962 55.000 0.00 0.00 0.00 5.28
2231 2296 1.898574 CCTTGCAGCTTCAACCCGT 60.899 57.895 0.00 0.00 0.00 5.28
2232 2297 1.455383 CCTTGCAGCTTCAACCCGTT 61.455 55.000 0.00 0.00 0.00 4.44
2233 2298 1.234821 CTTGCAGCTTCAACCCGTTA 58.765 50.000 0.00 0.00 0.00 3.18
2234 2299 1.606668 CTTGCAGCTTCAACCCGTTAA 59.393 47.619 0.00 0.00 0.00 2.01
2235 2300 1.681538 TGCAGCTTCAACCCGTTAAA 58.318 45.000 0.00 0.00 0.00 1.52
2236 2301 2.235016 TGCAGCTTCAACCCGTTAAAT 58.765 42.857 0.00 0.00 0.00 1.40
2237 2302 2.030363 TGCAGCTTCAACCCGTTAAATG 60.030 45.455 0.00 0.00 0.00 2.32
2238 2303 2.595386 CAGCTTCAACCCGTTAAATGC 58.405 47.619 0.00 0.00 0.00 3.56
2239 2304 2.228822 CAGCTTCAACCCGTTAAATGCT 59.771 45.455 0.00 0.00 0.00 3.79
2240 2305 2.228822 AGCTTCAACCCGTTAAATGCTG 59.771 45.455 0.00 0.00 0.00 4.41
2241 2306 2.030274 GCTTCAACCCGTTAAATGCTGT 60.030 45.455 0.00 0.00 0.00 4.40
2242 2307 3.564511 CTTCAACCCGTTAAATGCTGTG 58.435 45.455 0.00 0.00 0.00 3.66
2243 2308 1.883275 TCAACCCGTTAAATGCTGTGG 59.117 47.619 0.00 0.00 0.00 4.17
2244 2309 1.883275 CAACCCGTTAAATGCTGTGGA 59.117 47.619 0.00 0.00 0.00 4.02
2245 2310 1.821216 ACCCGTTAAATGCTGTGGAG 58.179 50.000 0.00 0.00 0.00 3.86
2246 2311 1.073284 ACCCGTTAAATGCTGTGGAGT 59.927 47.619 0.00 0.00 0.00 3.85
2247 2312 1.737793 CCCGTTAAATGCTGTGGAGTC 59.262 52.381 0.00 0.00 0.00 3.36
2248 2313 2.615493 CCCGTTAAATGCTGTGGAGTCT 60.615 50.000 0.00 0.00 0.00 3.24
2249 2314 3.074412 CCGTTAAATGCTGTGGAGTCTT 58.926 45.455 0.00 0.00 0.00 3.01
2250 2315 4.250464 CCGTTAAATGCTGTGGAGTCTTA 58.750 43.478 0.00 0.00 0.00 2.10
2251 2316 4.876107 CCGTTAAATGCTGTGGAGTCTTAT 59.124 41.667 0.00 0.00 0.00 1.73
2252 2317 5.220662 CCGTTAAATGCTGTGGAGTCTTATG 60.221 44.000 0.00 0.00 0.00 1.90
2253 2318 5.580691 CGTTAAATGCTGTGGAGTCTTATGA 59.419 40.000 0.00 0.00 0.00 2.15
2254 2319 6.092122 CGTTAAATGCTGTGGAGTCTTATGAA 59.908 38.462 0.00 0.00 0.00 2.57
2255 2320 5.886960 AAATGCTGTGGAGTCTTATGAAC 57.113 39.130 0.00 0.00 0.00 3.18
2256 2321 4.833478 ATGCTGTGGAGTCTTATGAACT 57.167 40.909 0.00 0.00 0.00 3.01
2257 2322 4.193826 TGCTGTGGAGTCTTATGAACTC 57.806 45.455 0.00 0.00 0.00 3.01
2258 2323 3.834813 TGCTGTGGAGTCTTATGAACTCT 59.165 43.478 3.55 0.00 0.00 3.24
2259 2324 4.180057 GCTGTGGAGTCTTATGAACTCTG 58.820 47.826 3.55 0.00 0.00 3.35
2260 2325 4.081972 GCTGTGGAGTCTTATGAACTCTGA 60.082 45.833 3.55 0.00 0.00 3.27
2261 2326 5.567623 GCTGTGGAGTCTTATGAACTCTGAA 60.568 44.000 3.55 0.00 0.00 3.02
2262 2327 6.611613 TGTGGAGTCTTATGAACTCTGAAT 57.388 37.500 3.55 0.00 0.00 2.57
2263 2328 6.634805 TGTGGAGTCTTATGAACTCTGAATC 58.365 40.000 3.55 0.00 0.00 2.52
2264 2329 6.438741 TGTGGAGTCTTATGAACTCTGAATCT 59.561 38.462 3.55 0.00 0.00 2.40
2265 2330 6.978080 GTGGAGTCTTATGAACTCTGAATCTC 59.022 42.308 3.55 0.00 0.00 2.75
2266 2331 6.665248 TGGAGTCTTATGAACTCTGAATCTCA 59.335 38.462 3.55 0.00 0.00 3.27
2267 2332 7.344093 TGGAGTCTTATGAACTCTGAATCTCAT 59.656 37.037 3.55 0.00 33.26 2.90
2268 2333 8.203485 GGAGTCTTATGAACTCTGAATCTCATT 58.797 37.037 3.55 0.00 31.20 2.57
2269 2334 9.598517 GAGTCTTATGAACTCTGAATCTCATTT 57.401 33.333 0.00 0.00 31.20 2.32
2277 2342 9.730705 TGAACTCTGAATCTCATTTATCTTTGT 57.269 29.630 0.00 0.00 0.00 2.83
2285 2350 9.890352 GAATCTCATTTATCTTTGTATCCTTGC 57.110 33.333 0.00 0.00 0.00 4.01
2286 2351 8.985315 ATCTCATTTATCTTTGTATCCTTGCA 57.015 30.769 0.00 0.00 0.00 4.08
2287 2352 8.442632 TCTCATTTATCTTTGTATCCTTGCAG 57.557 34.615 0.00 0.00 0.00 4.41
2288 2353 7.012704 TCTCATTTATCTTTGTATCCTTGCAGC 59.987 37.037 0.00 0.00 0.00 5.25
2289 2354 6.830324 TCATTTATCTTTGTATCCTTGCAGCT 59.170 34.615 0.00 0.00 0.00 4.24
2290 2355 7.340232 TCATTTATCTTTGTATCCTTGCAGCTT 59.660 33.333 0.00 0.00 0.00 3.74
2291 2356 6.683974 TTATCTTTGTATCCTTGCAGCTTC 57.316 37.500 0.00 0.00 0.00 3.86
2292 2357 4.019792 TCTTTGTATCCTTGCAGCTTCA 57.980 40.909 0.00 0.00 0.00 3.02
2293 2358 4.397420 TCTTTGTATCCTTGCAGCTTCAA 58.603 39.130 0.00 0.00 0.00 2.69
2294 2359 4.216257 TCTTTGTATCCTTGCAGCTTCAAC 59.784 41.667 0.00 0.00 0.00 3.18
2295 2360 2.436417 TGTATCCTTGCAGCTTCAACC 58.564 47.619 0.00 0.00 0.00 3.77
2296 2361 1.745653 GTATCCTTGCAGCTTCAACCC 59.254 52.381 0.00 0.00 0.00 4.11
2297 2362 0.112995 ATCCTTGCAGCTTCAACCCA 59.887 50.000 0.00 0.00 0.00 4.51
2298 2363 0.112995 TCCTTGCAGCTTCAACCCAT 59.887 50.000 0.00 0.00 0.00 4.00
2299 2364 0.971386 CCTTGCAGCTTCAACCCATT 59.029 50.000 0.00 0.00 0.00 3.16
2300 2365 2.170166 CCTTGCAGCTTCAACCCATTA 58.830 47.619 0.00 0.00 0.00 1.90
2301 2366 2.562298 CCTTGCAGCTTCAACCCATTAA 59.438 45.455 0.00 0.00 0.00 1.40
2302 2367 3.006752 CCTTGCAGCTTCAACCCATTAAA 59.993 43.478 0.00 0.00 0.00 1.52
2303 2368 4.322953 CCTTGCAGCTTCAACCCATTAAAT 60.323 41.667 0.00 0.00 0.00 1.40
2304 2369 4.191033 TGCAGCTTCAACCCATTAAATG 57.809 40.909 0.00 0.00 0.00 2.32
2305 2370 2.931969 GCAGCTTCAACCCATTAAATGC 59.068 45.455 0.00 0.00 0.00 3.56
2306 2371 3.368739 GCAGCTTCAACCCATTAAATGCT 60.369 43.478 0.00 0.00 0.00 3.79
2417 2482 4.101585 TGGATTCTCATCGTAGAAAGCCAT 59.898 41.667 13.39 0.00 43.58 4.40
2436 2501 1.669115 CACCCTGTCTTGACGGCAG 60.669 63.158 0.00 1.18 0.00 4.85
2447 2512 1.221466 TGACGGCAGCTGTTTCTTCG 61.221 55.000 16.64 11.87 0.00 3.79
2546 2611 7.894753 TTGATATTTGAATCCTACATTGCCA 57.105 32.000 0.00 0.00 0.00 4.92
2549 2614 2.036958 TGAATCCTACATTGCCACCG 57.963 50.000 0.00 0.00 0.00 4.94
2557 2623 2.217429 ACATTGCCACCGTGTTTTTC 57.783 45.000 0.00 0.00 0.00 2.29
2628 2694 8.565896 AACTGAAAGATAATACTGTGCATCAA 57.434 30.769 0.00 0.00 37.43 2.57
2650 2716 3.453059 TCTAAGAGAAACCCTCCGAGT 57.547 47.619 0.00 0.00 42.97 4.18
2847 2914 5.185454 CAGTCACACAGGCCAAGATATTAA 58.815 41.667 5.01 0.00 0.00 1.40
2849 2916 6.319658 CAGTCACACAGGCCAAGATATTAAAT 59.680 38.462 5.01 0.00 0.00 1.40
2890 2958 8.108551 ACCTCTTATAGTAGCGTTTACCTATG 57.891 38.462 0.00 0.00 0.00 2.23
2891 2959 7.176340 ACCTCTTATAGTAGCGTTTACCTATGG 59.824 40.741 0.00 0.00 0.00 2.74
2894 2962 3.729862 AGTAGCGTTTACCTATGGAGC 57.270 47.619 0.00 0.00 0.00 4.70
2895 2963 3.297736 AGTAGCGTTTACCTATGGAGCT 58.702 45.455 0.00 0.00 37.27 4.09
2896 2964 4.467769 AGTAGCGTTTACCTATGGAGCTA 58.532 43.478 0.00 0.00 35.02 3.32
2897 2965 5.078256 AGTAGCGTTTACCTATGGAGCTAT 58.922 41.667 0.00 0.00 37.91 2.97
2898 2966 4.957684 AGCGTTTACCTATGGAGCTATT 57.042 40.909 0.00 0.00 0.00 1.73
2899 2967 4.884247 AGCGTTTACCTATGGAGCTATTC 58.116 43.478 0.00 0.00 0.00 1.75
2900 2968 4.589374 AGCGTTTACCTATGGAGCTATTCT 59.411 41.667 0.00 0.00 0.00 2.40
2901 2969 5.070580 AGCGTTTACCTATGGAGCTATTCTT 59.929 40.000 0.00 0.00 0.00 2.52
2902 2970 5.758784 GCGTTTACCTATGGAGCTATTCTTT 59.241 40.000 0.00 0.00 0.00 2.52
2903 2971 6.927381 GCGTTTACCTATGGAGCTATTCTTTA 59.073 38.462 0.00 0.00 0.00 1.85
2904 2972 7.603024 GCGTTTACCTATGGAGCTATTCTTTAT 59.397 37.037 0.00 0.00 0.00 1.40
2905 2973 9.141400 CGTTTACCTATGGAGCTATTCTTTATC 57.859 37.037 0.00 0.00 0.00 1.75
2906 2974 9.998106 GTTTACCTATGGAGCTATTCTTTATCA 57.002 33.333 0.00 0.00 0.00 2.15
2909 2977 8.677870 ACCTATGGAGCTATTCTTTATCATCT 57.322 34.615 0.00 0.00 0.00 2.90
2910 2978 8.757877 ACCTATGGAGCTATTCTTTATCATCTC 58.242 37.037 0.00 0.00 0.00 2.75
2911 2979 8.756927 CCTATGGAGCTATTCTTTATCATCTCA 58.243 37.037 0.00 0.00 0.00 3.27
2912 2980 9.585099 CTATGGAGCTATTCTTTATCATCTCAC 57.415 37.037 0.00 0.00 0.00 3.51
2913 2981 6.763355 TGGAGCTATTCTTTATCATCTCACC 58.237 40.000 0.00 0.00 0.00 4.02
2914 2982 6.169800 GGAGCTATTCTTTATCATCTCACCC 58.830 44.000 0.00 0.00 0.00 4.61
2915 2983 5.788450 AGCTATTCTTTATCATCTCACCCG 58.212 41.667 0.00 0.00 0.00 5.28
2916 2984 4.390297 GCTATTCTTTATCATCTCACCCGC 59.610 45.833 0.00 0.00 0.00 6.13
2917 2985 3.904800 TTCTTTATCATCTCACCCGCA 57.095 42.857 0.00 0.00 0.00 5.69
2918 2986 3.904800 TCTTTATCATCTCACCCGCAA 57.095 42.857 0.00 0.00 0.00 4.85
2919 2987 4.214986 TCTTTATCATCTCACCCGCAAA 57.785 40.909 0.00 0.00 0.00 3.68
2920 2988 4.584874 TCTTTATCATCTCACCCGCAAAA 58.415 39.130 0.00 0.00 0.00 2.44
2921 2989 5.007034 TCTTTATCATCTCACCCGCAAAAA 58.993 37.500 0.00 0.00 0.00 1.94
2963 3031 8.641541 TCATCTGATTACAACATCTATGTAGCA 58.358 33.333 0.00 0.00 40.80 3.49
2964 3032 8.923683 CATCTGATTACAACATCTATGTAGCAG 58.076 37.037 0.00 0.00 40.80 4.24
2965 3033 8.237811 TCTGATTACAACATCTATGTAGCAGA 57.762 34.615 7.22 7.22 40.80 4.26
2966 3034 8.138074 TCTGATTACAACATCTATGTAGCAGAC 58.862 37.037 7.22 0.00 40.80 3.51
2968 3036 4.720649 ACAACATCTATGTAGCAGACGT 57.279 40.909 0.00 0.00 40.80 4.34
2969 3037 5.073311 ACAACATCTATGTAGCAGACGTT 57.927 39.130 0.00 0.00 40.80 3.99
2970 3038 4.864806 ACAACATCTATGTAGCAGACGTTG 59.135 41.667 9.09 9.09 46.38 4.10
2971 3039 4.720649 ACATCTATGTAGCAGACGTTGT 57.279 40.909 0.00 0.00 39.68 3.32
2984 3052 9.507280 GTAGCAGACGTTGTAAGTTTATGTATA 57.493 33.333 0.00 0.00 0.00 1.47
3007 3075 0.248565 AGCTCGCATGCTTCTTCTGA 59.751 50.000 17.13 2.43 40.93 3.27
3019 3087 7.387122 GCATGCTTCTTCTGATGTTCTATGATA 59.613 37.037 11.37 0.00 0.00 2.15
3021 3089 8.883954 TGCTTCTTCTGATGTTCTATGATAAG 57.116 34.615 0.00 0.00 0.00 1.73
3036 3104 9.886132 TTCTATGATAAGTTAGTTGTTTCCCTC 57.114 33.333 0.00 0.00 0.00 4.30
3037 3105 9.042450 TCTATGATAAGTTAGTTGTTTCCCTCA 57.958 33.333 0.00 0.00 0.00 3.86
3040 3108 8.197592 TGATAAGTTAGTTGTTTCCCTCACTA 57.802 34.615 0.00 0.00 0.00 2.74
3095 3164 0.040058 TGGCCAACTCAATGCTGGAT 59.960 50.000 0.61 0.00 33.88 3.41
3110 3179 3.279434 GCTGGATTTTGACCCTTCGTAT 58.721 45.455 0.00 0.00 0.00 3.06
3181 3250 4.507756 CAGTGATGTCGAGTTTCAAGACAA 59.492 41.667 1.57 0.00 46.22 3.18
3194 3263 2.642311 TCAAGACAATTGGGGCAGAGTA 59.358 45.455 10.83 0.00 0.00 2.59
3251 3320 4.094442 GCCTTGTAAAGTGGTGTATGCTAC 59.906 45.833 0.00 0.00 44.25 3.58
3272 3341 9.147732 TGCTACTCTGGAAATCATCTTCTATTA 57.852 33.333 0.00 0.00 0.00 0.98
3391 3460 8.991026 CACTGACTTAGTAGAATATACGTAGCT 58.009 37.037 0.08 0.00 37.60 3.32
3458 3527 4.978099 AGATTGTGGAGATAAATCGGCAT 58.022 39.130 0.00 0.00 35.83 4.40
3490 3559 4.882671 ACTCTGCAACCATTTATTAGCG 57.117 40.909 0.00 0.00 0.00 4.26
3493 3562 3.625764 TCTGCAACCATTTATTAGCGGAC 59.374 43.478 0.00 0.00 32.91 4.79
3499 3568 2.504367 CATTTATTAGCGGACCCCCAG 58.496 52.381 0.00 0.00 0.00 4.45
3584 3653 6.704937 TCATGTCTTCATTTGCTAGCTCTATG 59.295 38.462 17.23 15.41 31.15 2.23
3627 3696 6.164876 CCTCCTAAGCAACATCATCTCATAG 58.835 44.000 0.00 0.00 0.00 2.23
3629 3698 5.070847 TCCTAAGCAACATCATCTCATAGCA 59.929 40.000 0.00 0.00 0.00 3.49
3633 3702 5.131067 AGCAACATCATCTCATAGCACATT 58.869 37.500 0.00 0.00 0.00 2.71
3800 3869 1.880340 GGAAGGCATGACGAGCTCG 60.880 63.158 33.45 33.45 46.33 5.03
3849 3918 9.920946 AAATATAGGAATCAACAAGTGGTATGT 57.079 29.630 0.00 0.00 0.00 2.29
3890 3960 1.141881 ACGCAGCCCTCAATAGTCG 59.858 57.895 0.00 0.00 0.00 4.18
3904 3974 8.552034 CCCTCAATAGTCGAGATAAATTTTGTC 58.448 37.037 0.00 0.00 31.84 3.18
3939 4009 0.910088 AGTAGTCCCAACTCCCAGGC 60.910 60.000 0.00 0.00 36.92 4.85
3941 4011 2.119847 TAGTCCCAACTCCCAGGCCT 62.120 60.000 0.00 0.00 36.92 5.19
3965 4035 2.091152 AGATTTAAATTGCGCGCTCG 57.909 45.000 33.29 0.00 39.07 5.03
3969 4039 1.069255 TTAAATTGCGCGCTCGTGTA 58.931 45.000 33.29 14.15 38.14 2.90
3976 4046 1.482955 CGCGCTCGTGTATGTATGC 59.517 57.895 5.56 0.00 0.00 3.14
3987 4057 7.740346 GCTCGTGTATGTATGCATGTAAATAAC 59.260 37.037 10.16 0.00 36.58 1.89
4012 4082 1.650528 AAGGCTAGTGTCCTTGCTCT 58.349 50.000 0.00 0.00 42.03 4.09
4013 4083 2.534042 AGGCTAGTGTCCTTGCTCTA 57.466 50.000 0.00 0.00 39.12 2.43
4014 4084 2.383855 AGGCTAGTGTCCTTGCTCTAG 58.616 52.381 0.00 0.00 39.12 2.43
4015 4085 2.104170 GGCTAGTGTCCTTGCTCTAGT 58.896 52.381 0.00 0.00 39.12 2.57
4016 4086 2.159170 GGCTAGTGTCCTTGCTCTAGTG 60.159 54.545 0.00 0.00 39.12 2.74
4017 4087 2.737039 GCTAGTGTCCTTGCTCTAGTGC 60.737 54.545 9.86 9.86 36.64 4.40
4018 4088 0.610687 AGTGTCCTTGCTCTAGTGCC 59.389 55.000 13.91 0.00 0.00 5.01
4019 4089 0.321671 GTGTCCTTGCTCTAGTGCCA 59.678 55.000 13.91 2.41 0.00 4.92
4020 4090 1.055849 TGTCCTTGCTCTAGTGCCAA 58.944 50.000 13.91 7.65 0.00 4.52
4021 4091 1.630369 TGTCCTTGCTCTAGTGCCAAT 59.370 47.619 13.91 0.00 0.00 3.16
4022 4092 2.012673 GTCCTTGCTCTAGTGCCAATG 58.987 52.381 13.91 6.23 0.00 2.82
4023 4093 1.065199 TCCTTGCTCTAGTGCCAATGG 60.065 52.381 13.91 10.22 0.00 3.16
4024 4094 1.340405 CCTTGCTCTAGTGCCAATGGT 60.340 52.381 13.91 0.00 0.00 3.55
4025 4095 2.012673 CTTGCTCTAGTGCCAATGGTC 58.987 52.381 13.91 0.00 0.00 4.02
4065 4135 1.067985 GCTCTTTGGCTGCTTTCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
4066 4136 2.233271 CTCTTTGGCTGCTTTCCTTCA 58.767 47.619 0.00 0.00 0.00 3.02
4079 4149 1.377725 CCTTCACCGCCAAGATGCT 60.378 57.895 0.00 0.00 0.00 3.79
4084 4154 0.597568 CACCGCCAAGATGCTTTTGA 59.402 50.000 0.00 0.00 0.00 2.69
4085 4155 0.883833 ACCGCCAAGATGCTTTTGAG 59.116 50.000 0.00 0.00 0.00 3.02
4086 4156 0.171903 CCGCCAAGATGCTTTTGAGG 59.828 55.000 0.00 0.00 0.00 3.86
4088 4158 1.135575 CGCCAAGATGCTTTTGAGGAC 60.136 52.381 0.00 0.00 0.00 3.85
4107 4177 3.198635 GGACAAGGTGGATGAGAGATTCA 59.801 47.826 0.00 0.00 40.85 2.57
4150 4223 2.167281 GCCTCTGCTAGTGATGTCAAGA 59.833 50.000 0.00 0.00 33.53 3.02
4156 4229 3.829026 TGCTAGTGATGTCAAGACAGTCT 59.171 43.478 8.99 0.00 45.48 3.24
4198 4271 1.101331 GCTTCCCATTCCTCAAGCAG 58.899 55.000 0.00 0.00 40.86 4.24
4239 4351 1.911766 TTCCCCCTCAGTGACCGTC 60.912 63.158 0.00 0.00 0.00 4.79
4251 4363 1.153881 GACCGTCGGTAGCCAAGAC 60.154 63.158 18.88 0.00 35.25 3.01
4266 4378 4.065110 GACGCAAGGCCTTCACTT 57.935 55.556 17.29 4.15 42.36 3.16
4278 4390 1.407437 CCTTCACTTTCTATGGCCGCT 60.407 52.381 0.00 0.00 0.00 5.52
4280 4392 0.901827 TCACTTTCTATGGCCGCTGA 59.098 50.000 0.00 0.00 0.00 4.26
4281 4393 1.009829 CACTTTCTATGGCCGCTGAC 58.990 55.000 0.00 0.00 0.00 3.51
4291 4403 2.809601 CCGCTGACGTTCCGGAAG 60.810 66.667 19.50 14.20 44.55 3.46
4310 4422 4.202172 GGAAGCTTAGTCTAGTGGGATGTC 60.202 50.000 0.00 0.00 0.00 3.06
4321 4433 3.445008 AGTGGGATGTCAGCTCTTCTTA 58.555 45.455 0.00 0.00 0.00 2.10
4325 4437 5.649831 GTGGGATGTCAGCTCTTCTTATTTT 59.350 40.000 0.00 0.00 0.00 1.82
4398 4512 7.417003 GGTTAGAGAGTTTGAGAGGTAGAATCC 60.417 44.444 0.00 0.00 0.00 3.01
4408 4522 5.022227 AGAGGTAGAATCCATGGCTAGAT 57.978 43.478 6.96 0.00 0.00 1.98
4427 4541 7.325660 CTAGATAGCATTTTCATGTGGTTGT 57.674 36.000 0.00 0.00 32.28 3.32
4435 4549 6.646240 GCATTTTCATGTGGTTGTACTTCAAT 59.354 34.615 0.00 0.00 34.15 2.57
4441 4555 6.545666 TCATGTGGTTGTACTTCAATTTGACT 59.454 34.615 0.00 0.00 38.38 3.41
4520 4638 4.551410 CGTGTTTTTCCGTCCTCTGTTTAC 60.551 45.833 0.00 0.00 0.00 2.01
4525 4643 3.313012 TCCGTCCTCTGTTTACATGTG 57.687 47.619 9.11 0.00 0.00 3.21
4567 4685 3.674997 TGCAGAGTTTGGGTATCTTGTC 58.325 45.455 0.00 0.00 0.00 3.18
4577 4695 2.351726 GGGTATCTTGTCGTGCATGAAC 59.648 50.000 10.93 3.84 35.34 3.18
4578 4696 3.000041 GGTATCTTGTCGTGCATGAACA 59.000 45.455 10.93 8.53 35.34 3.18
4579 4697 3.435327 GGTATCTTGTCGTGCATGAACAA 59.565 43.478 10.93 15.15 35.34 2.83
4581 4699 1.264020 TCTTGTCGTGCATGAACAAGC 59.736 47.619 28.16 13.52 38.06 4.01
4630 4748 2.823747 AGCTAGACAATCACACGGTACA 59.176 45.455 0.00 0.00 0.00 2.90
4671 4789 4.385825 TGAAACAACACTAGACATGTCCC 58.614 43.478 22.21 0.00 0.00 4.46
4684 4802 6.319048 AGACATGTCCCTGAAACATCTTAT 57.681 37.500 22.21 0.00 35.19 1.73
4694 4812 6.402550 CCCTGAAACATCTTATCGAAACACAG 60.403 42.308 0.00 0.00 0.00 3.66
4704 4822 1.576421 GAAACACAGGCCTTCAGCG 59.424 57.895 0.00 0.00 45.17 5.18
4716 4834 1.507141 CTTCAGCGGGCAAAACGAGT 61.507 55.000 0.00 0.00 0.00 4.18
4730 4848 5.258622 CAAAACGAGTAAGACATAGCATGC 58.741 41.667 10.51 10.51 0.00 4.06
4735 4853 5.299531 ACGAGTAAGACATAGCATGCTCTTA 59.700 40.000 26.57 21.37 34.67 2.10
4744 4862 6.381801 ACATAGCATGCTCTTAAAACAACAC 58.618 36.000 26.57 0.00 0.00 3.32
4746 4864 4.863491 AGCATGCTCTTAAAACAACACTG 58.137 39.130 16.30 0.00 0.00 3.66
4750 4868 2.360801 GCTCTTAAAACAACACTGGGCA 59.639 45.455 0.00 0.00 0.00 5.36
4751 4869 3.550842 GCTCTTAAAACAACACTGGGCAG 60.551 47.826 0.00 0.00 0.00 4.85
4761 4879 1.064758 ACACTGGGCAGTTCACTCAAA 60.065 47.619 0.00 0.00 40.20 2.69
4809 4928 3.782046 CGATGTAACAACCAGGACTAGG 58.218 50.000 0.00 0.00 0.00 3.02
4829 4948 7.902087 ACTAGGACTATGCTTAGGAATTGATC 58.098 38.462 11.03 0.00 0.00 2.92
4830 4949 7.732593 ACTAGGACTATGCTTAGGAATTGATCT 59.267 37.037 11.03 0.70 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 137 1.466167 CTTGCACGATGGAAGGTTCAG 59.534 52.381 10.05 0.00 41.35 3.02
176 183 4.298103 ACAAAGAACAGAGAGATGCCAT 57.702 40.909 0.00 0.00 0.00 4.40
184 191 3.199946 AGTGGACCAACAAAGAACAGAGA 59.800 43.478 0.00 0.00 0.00 3.10
203 210 4.288670 ACACGAGATCGGTATTACAGTG 57.711 45.455 7.22 0.00 44.95 3.66
234 241 7.489574 GGCACCTGAAAACAATTTTTGATAA 57.510 32.000 0.00 0.00 34.94 1.75
291 298 1.079819 GAGCACAGCTCGCAACCTA 60.080 57.895 2.96 0.00 45.85 3.08
318 325 1.880796 TTCGTGCACGCGATATGGG 60.881 57.895 33.63 5.25 40.76 4.00
393 400 2.223745 TCCGGCTAACAAGGTGTTTTC 58.776 47.619 0.00 0.00 41.45 2.29
479 486 2.742589 GTTAGCACACTCTTAACTGCCC 59.257 50.000 0.00 0.00 0.00 5.36
480 487 3.665190 AGTTAGCACACTCTTAACTGCC 58.335 45.455 0.00 0.00 30.73 4.85
481 488 4.912528 GAGTTAGCACACTCTTAACTGC 57.087 45.455 7.82 0.00 40.23 4.40
517 524 9.485591 GCGATTATTTGAGAAATAAAGTTTCGA 57.514 29.630 17.99 0.00 44.07 3.71
518 525 9.272901 TGCGATTATTTGAGAAATAAAGTTTCG 57.727 29.630 13.28 13.28 44.07 3.46
521 528 9.573133 CCTTGCGATTATTTGAGAAATAAAGTT 57.427 29.630 5.78 0.00 44.07 2.66
522 529 8.739972 ACCTTGCGATTATTTGAGAAATAAAGT 58.260 29.630 5.78 0.00 44.07 2.66
523 530 9.226345 GACCTTGCGATTATTTGAGAAATAAAG 57.774 33.333 5.78 5.08 44.07 1.85
524 531 8.735315 TGACCTTGCGATTATTTGAGAAATAAA 58.265 29.630 5.78 0.00 44.07 1.40
525 532 8.275015 TGACCTTGCGATTATTTGAGAAATAA 57.725 30.769 4.43 4.43 44.73 1.40
526 533 7.857734 TGACCTTGCGATTATTTGAGAAATA 57.142 32.000 0.00 0.00 32.38 1.40
527 534 6.757897 TGACCTTGCGATTATTTGAGAAAT 57.242 33.333 0.00 0.00 34.90 2.17
528 535 6.757897 ATGACCTTGCGATTATTTGAGAAA 57.242 33.333 0.00 0.00 0.00 2.52
529 536 6.757897 AATGACCTTGCGATTATTTGAGAA 57.242 33.333 0.00 0.00 0.00 2.87
530 537 6.757897 AAATGACCTTGCGATTATTTGAGA 57.242 33.333 0.00 0.00 0.00 3.27
531 538 7.471721 TGTAAATGACCTTGCGATTATTTGAG 58.528 34.615 0.00 0.00 0.00 3.02
532 539 7.384439 TGTAAATGACCTTGCGATTATTTGA 57.616 32.000 0.00 0.00 0.00 2.69
533 540 7.220683 CCTTGTAAATGACCTTGCGATTATTTG 59.779 37.037 0.00 0.00 0.00 2.32
534 541 7.093945 ACCTTGTAAATGACCTTGCGATTATTT 60.094 33.333 0.00 0.00 0.00 1.40
535 542 6.377146 ACCTTGTAAATGACCTTGCGATTATT 59.623 34.615 0.00 0.00 0.00 1.40
536 543 5.885912 ACCTTGTAAATGACCTTGCGATTAT 59.114 36.000 0.00 0.00 0.00 1.28
537 544 5.250200 ACCTTGTAAATGACCTTGCGATTA 58.750 37.500 0.00 0.00 0.00 1.75
538 545 4.079253 ACCTTGTAAATGACCTTGCGATT 58.921 39.130 0.00 0.00 0.00 3.34
539 546 3.686016 ACCTTGTAAATGACCTTGCGAT 58.314 40.909 0.00 0.00 0.00 4.58
540 547 3.134574 ACCTTGTAAATGACCTTGCGA 57.865 42.857 0.00 0.00 0.00 5.10
541 548 3.915437 AACCTTGTAAATGACCTTGCG 57.085 42.857 0.00 0.00 0.00 4.85
542 549 6.206829 ACTCTTAACCTTGTAAATGACCTTGC 59.793 38.462 0.00 0.00 0.00 4.01
543 550 7.228706 ACACTCTTAACCTTGTAAATGACCTTG 59.771 37.037 0.00 0.00 0.00 3.61
544 551 7.228706 CACACTCTTAACCTTGTAAATGACCTT 59.771 37.037 0.00 0.00 0.00 3.50
545 552 6.710744 CACACTCTTAACCTTGTAAATGACCT 59.289 38.462 0.00 0.00 0.00 3.85
546 553 6.567891 GCACACTCTTAACCTTGTAAATGACC 60.568 42.308 0.00 0.00 0.00 4.02
547 554 6.204882 AGCACACTCTTAACCTTGTAAATGAC 59.795 38.462 0.00 0.00 0.00 3.06
548 555 6.296026 AGCACACTCTTAACCTTGTAAATGA 58.704 36.000 0.00 0.00 0.00 2.57
549 556 6.560253 AGCACACTCTTAACCTTGTAAATG 57.440 37.500 0.00 0.00 0.00 2.32
550 557 7.937394 AGTTAGCACACTCTTAACCTTGTAAAT 59.063 33.333 0.00 0.00 0.00 1.40
551 558 7.277396 AGTTAGCACACTCTTAACCTTGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
552 559 6.823497 AGTTAGCACACTCTTAACCTTGTAA 58.177 36.000 0.00 0.00 0.00 2.41
553 560 6.041182 TGAGTTAGCACACTCTTAACCTTGTA 59.959 38.462 14.46 0.00 43.32 2.41
554 561 5.163343 TGAGTTAGCACACTCTTAACCTTGT 60.163 40.000 14.46 0.00 43.32 3.16
555 562 5.297547 TGAGTTAGCACACTCTTAACCTTG 58.702 41.667 14.46 0.00 43.32 3.61
556 563 5.546621 TGAGTTAGCACACTCTTAACCTT 57.453 39.130 14.46 0.00 43.32 3.50
557 564 5.546621 TTGAGTTAGCACACTCTTAACCT 57.453 39.130 14.46 0.00 43.32 3.50
558 565 6.803154 AATTGAGTTAGCACACTCTTAACC 57.197 37.500 14.46 0.00 43.32 2.85
605 612 5.741673 GCACATTGCTTCCTTTTCCCTAAAA 60.742 40.000 0.00 0.00 40.96 1.52
698 705 3.438087 CAGAACAGAACAGGCCTAATGTG 59.562 47.826 3.98 8.87 0.00 3.21
704 711 1.062488 ACCCAGAACAGAACAGGCCT 61.062 55.000 0.00 0.00 0.00 5.19
763 772 4.761739 CCATCTACTCAGAAAAACAGCCAA 59.238 41.667 0.00 0.00 33.50 4.52
767 776 5.947228 TTGCCATCTACTCAGAAAAACAG 57.053 39.130 0.00 0.00 33.50 3.16
826 835 9.262358 GCCACACAAACCAGTTTTTAATTATTA 57.738 29.630 0.00 0.00 0.00 0.98
829 838 6.879400 AGCCACACAAACCAGTTTTTAATTA 58.121 32.000 0.00 0.00 0.00 1.40
831 840 5.351948 AGCCACACAAACCAGTTTTTAAT 57.648 34.783 0.00 0.00 0.00 1.40
832 841 4.810191 AGCCACACAAACCAGTTTTTAA 57.190 36.364 0.00 0.00 0.00 1.52
840 852 1.965754 GCCCAAAGCCACACAAACCA 61.966 55.000 0.00 0.00 34.35 3.67
842 854 4.436515 GCCCAAAGCCACACAAAC 57.563 55.556 0.00 0.00 34.35 2.93
920 932 4.379918 GCTCAAGAAGTAATTTCAGTGGGC 60.380 45.833 0.00 1.43 40.29 5.36
948 960 4.184629 CCACCACCTTATCTTCTTCTTCG 58.815 47.826 0.00 0.00 0.00 3.79
1016 1033 6.210784 GGAAAGGAATAGGGTTTTAGCAGTTT 59.789 38.462 0.00 0.00 0.00 2.66
1018 1035 5.262009 GGAAAGGAATAGGGTTTTAGCAGT 58.738 41.667 0.00 0.00 0.00 4.40
1020 1037 4.606210 GGGAAAGGAATAGGGTTTTAGCA 58.394 43.478 0.00 0.00 0.00 3.49
1032 1049 3.007542 GGGAGGCGGGAAAGGAAT 58.992 61.111 0.00 0.00 0.00 3.01
1267 1293 0.036388 TAGCAAAGCAGAGGGGTTCG 60.036 55.000 0.00 0.00 35.85 3.95
1291 1317 3.242518 CAGACACAGTACATACACACGG 58.757 50.000 0.00 0.00 0.00 4.94
1302 1339 5.245531 GGATTCATCCAAACAGACACAGTA 58.754 41.667 0.51 0.00 46.38 2.74
1357 1420 2.026262 GGACCCTAAAACCATCAGAGCA 60.026 50.000 0.00 0.00 0.00 4.26
1358 1421 2.239907 AGGACCCTAAAACCATCAGAGC 59.760 50.000 0.00 0.00 0.00 4.09
1359 1422 3.370953 CCAGGACCCTAAAACCATCAGAG 60.371 52.174 0.00 0.00 0.00 3.35
1360 1423 2.576191 CCAGGACCCTAAAACCATCAGA 59.424 50.000 0.00 0.00 0.00 3.27
1361 1424 2.576191 TCCAGGACCCTAAAACCATCAG 59.424 50.000 0.00 0.00 0.00 2.90
1362 1425 2.576191 CTCCAGGACCCTAAAACCATCA 59.424 50.000 0.00 0.00 0.00 3.07
1364 1427 2.929301 TCTCCAGGACCCTAAAACCAT 58.071 47.619 0.00 0.00 0.00 3.55
1365 1428 2.374170 GTTCTCCAGGACCCTAAAACCA 59.626 50.000 0.00 0.00 0.00 3.67
1367 1430 2.696506 CGTTCTCCAGGACCCTAAAAC 58.303 52.381 0.00 0.00 0.00 2.43
1368 1431 1.002773 GCGTTCTCCAGGACCCTAAAA 59.997 52.381 0.00 0.00 0.00 1.52
1398 1461 2.801421 GAGCGCATCTCCTCGTCA 59.199 61.111 11.47 0.00 35.77 4.35
1414 1477 3.838271 GCTGTCGCCGAGGATGGA 61.838 66.667 0.00 0.00 0.00 3.41
1476 1539 6.475596 TCAAAACCCCGGTTATTTGTTTTA 57.524 33.333 17.40 2.28 37.10 1.52
1481 1544 5.400066 AGAATCAAAACCCCGGTTATTTG 57.600 39.130 13.82 13.82 37.35 2.32
1676 1739 9.213819 CAGATAAAAATACATGTGTGTTCATCG 57.786 33.333 9.11 0.00 39.77 3.84
1705 1769 3.251729 ACTTTAAGCTATCATGCATGCCG 59.748 43.478 22.25 12.73 34.99 5.69
1748 1812 4.115516 TGAATCTCGCTACTGATTGAAGC 58.884 43.478 0.00 0.00 33.60 3.86
1764 1828 5.587388 AATCGATGTTTGGCAATGAATCT 57.413 34.783 0.00 0.00 0.00 2.40
1765 1829 5.501252 GCAAATCGATGTTTGGCAATGAATC 60.501 40.000 12.19 4.13 39.03 2.52
1861 1925 2.496871 TGTGGATGTTCATGGAAATGCC 59.503 45.455 0.00 0.00 37.10 4.40
1866 1930 4.044946 TGGATTGTGGATGTTCATGGAA 57.955 40.909 0.00 0.00 0.00 3.53
1871 1935 5.128499 AGTTGTTTTGGATTGTGGATGTTCA 59.872 36.000 0.00 0.00 0.00 3.18
1872 1936 5.600696 AGTTGTTTTGGATTGTGGATGTTC 58.399 37.500 0.00 0.00 0.00 3.18
1881 1945 5.811613 TGAAAGCAGAAGTTGTTTTGGATTG 59.188 36.000 0.00 0.00 39.87 2.67
1909 1973 9.627123 CCTCAGTTTGAAATATGGGAAATACTA 57.373 33.333 0.00 0.00 0.00 1.82
1922 1986 4.074970 AGATCGTTGCCTCAGTTTGAAAT 58.925 39.130 0.00 0.00 0.00 2.17
1940 2004 6.238593 GCATTAGAGTGACCCAAATTCAGATC 60.239 42.308 0.00 0.00 0.00 2.75
1949 2013 6.422333 TGATTTATGCATTAGAGTGACCCAA 58.578 36.000 3.54 0.00 0.00 4.12
1954 2018 8.959548 ACATTGTTGATTTATGCATTAGAGTGA 58.040 29.630 3.54 0.00 0.00 3.41
1993 2057 2.998670 CGTCTCTGCAATGTTGATGTCT 59.001 45.455 0.00 0.00 0.00 3.41
2034 2098 4.412858 TCAACCTTTTGTGTACTCCCCTAA 59.587 41.667 0.00 0.00 34.02 2.69
2035 2099 3.975312 TCAACCTTTTGTGTACTCCCCTA 59.025 43.478 0.00 0.00 34.02 3.53
2048 2112 8.805175 TCACAACAATCATCATATCAACCTTTT 58.195 29.630 0.00 0.00 0.00 2.27
2049 2113 8.352137 TCACAACAATCATCATATCAACCTTT 57.648 30.769 0.00 0.00 0.00 3.11
2051 2115 7.943079 TTCACAACAATCATCATATCAACCT 57.057 32.000 0.00 0.00 0.00 3.50
2067 2131 3.754965 AGCTCCTATTGCTTTCACAACA 58.245 40.909 0.00 0.00 37.52 3.33
2086 2150 4.746611 CCACATCTTTGAACTTGGAAAAGC 59.253 41.667 0.00 0.00 32.20 3.51
2087 2151 6.147864 TCCACATCTTTGAACTTGGAAAAG 57.852 37.500 0.00 0.00 30.08 2.27
2173 2238 6.872920 AGATTCAGAGTTCATAAGACTCCAC 58.127 40.000 0.96 0.00 0.00 4.02
2174 2239 6.665248 TGAGATTCAGAGTTCATAAGACTCCA 59.335 38.462 0.96 0.00 0.00 3.86
2175 2240 7.106439 TGAGATTCAGAGTTCATAAGACTCC 57.894 40.000 0.96 0.00 0.00 3.85
2176 2241 9.598517 AAATGAGATTCAGAGTTCATAAGACTC 57.401 33.333 0.00 0.00 30.53 3.36
2184 2249 9.730705 ACAAAGATAAATGAGATTCAGAGTTCA 57.269 29.630 0.00 0.00 0.00 3.18
2192 2257 9.890352 GCAAGGATACAAAGATAAATGAGATTC 57.110 33.333 0.00 0.00 41.41 2.52
2193 2258 9.412460 TGCAAGGATACAAAGATAAATGAGATT 57.588 29.630 0.00 0.00 41.41 2.40
2194 2259 8.985315 TGCAAGGATACAAAGATAAATGAGAT 57.015 30.769 0.00 0.00 41.41 2.75
2195 2260 7.012704 GCTGCAAGGATACAAAGATAAATGAGA 59.987 37.037 0.00 0.00 41.41 3.27
2196 2261 7.013083 AGCTGCAAGGATACAAAGATAAATGAG 59.987 37.037 1.02 0.00 41.41 2.90
2197 2262 6.830324 AGCTGCAAGGATACAAAGATAAATGA 59.170 34.615 1.02 0.00 41.41 2.57
2198 2263 7.035840 AGCTGCAAGGATACAAAGATAAATG 57.964 36.000 1.02 0.00 41.41 2.32
2199 2264 7.340232 TGAAGCTGCAAGGATACAAAGATAAAT 59.660 33.333 1.02 0.00 41.41 1.40
2200 2265 6.658816 TGAAGCTGCAAGGATACAAAGATAAA 59.341 34.615 1.02 0.00 41.41 1.40
2201 2266 6.179756 TGAAGCTGCAAGGATACAAAGATAA 58.820 36.000 1.02 0.00 41.41 1.75
2202 2267 5.744171 TGAAGCTGCAAGGATACAAAGATA 58.256 37.500 1.02 0.00 41.41 1.98
2203 2268 4.592942 TGAAGCTGCAAGGATACAAAGAT 58.407 39.130 1.02 0.00 41.41 2.40
2204 2269 4.019792 TGAAGCTGCAAGGATACAAAGA 57.980 40.909 1.02 0.00 41.41 2.52
2205 2270 4.479619 GTTGAAGCTGCAAGGATACAAAG 58.520 43.478 7.60 0.00 41.41 2.77
2206 2271 3.255642 GGTTGAAGCTGCAAGGATACAAA 59.744 43.478 7.60 0.00 41.41 2.83
2207 2272 2.819608 GGTTGAAGCTGCAAGGATACAA 59.180 45.455 7.60 0.00 41.41 2.41
2208 2273 2.436417 GGTTGAAGCTGCAAGGATACA 58.564 47.619 7.60 0.00 41.41 2.29
2209 2274 1.745653 GGGTTGAAGCTGCAAGGATAC 59.254 52.381 7.60 0.00 0.00 2.24
2210 2275 1.678728 CGGGTTGAAGCTGCAAGGATA 60.679 52.381 7.60 0.00 0.00 2.59
2211 2276 0.962356 CGGGTTGAAGCTGCAAGGAT 60.962 55.000 7.60 0.00 0.00 3.24
2212 2277 1.600636 CGGGTTGAAGCTGCAAGGA 60.601 57.895 7.60 0.00 0.00 3.36
2213 2278 1.455383 AACGGGTTGAAGCTGCAAGG 61.455 55.000 7.60 2.84 0.00 3.61
2214 2279 1.234821 TAACGGGTTGAAGCTGCAAG 58.765 50.000 7.60 0.00 0.00 4.01
2215 2280 1.681538 TTAACGGGTTGAAGCTGCAA 58.318 45.000 1.85 1.85 0.00 4.08
2216 2281 1.681538 TTTAACGGGTTGAAGCTGCA 58.318 45.000 2.65 0.00 0.00 4.41
2217 2282 2.595386 CATTTAACGGGTTGAAGCTGC 58.405 47.619 2.65 0.00 0.00 5.25
2218 2283 2.228822 AGCATTTAACGGGTTGAAGCTG 59.771 45.455 0.99 0.99 0.00 4.24
2219 2284 2.228822 CAGCATTTAACGGGTTGAAGCT 59.771 45.455 0.00 1.79 0.00 3.74
2220 2285 2.030274 ACAGCATTTAACGGGTTGAAGC 60.030 45.455 0.00 0.00 0.00 3.86
2221 2286 3.564511 CACAGCATTTAACGGGTTGAAG 58.435 45.455 0.00 0.00 0.00 3.02
2222 2287 2.294791 CCACAGCATTTAACGGGTTGAA 59.705 45.455 0.00 0.00 0.00 2.69
2223 2288 1.883275 CCACAGCATTTAACGGGTTGA 59.117 47.619 0.00 0.00 0.00 3.18
2224 2289 1.883275 TCCACAGCATTTAACGGGTTG 59.117 47.619 0.00 0.00 0.00 3.77
2225 2290 2.159382 CTCCACAGCATTTAACGGGTT 58.841 47.619 0.00 0.00 0.00 4.11
2226 2291 1.073284 ACTCCACAGCATTTAACGGGT 59.927 47.619 0.00 0.00 0.00 5.28
2227 2292 1.737793 GACTCCACAGCATTTAACGGG 59.262 52.381 0.00 0.00 0.00 5.28
2228 2293 2.699954 AGACTCCACAGCATTTAACGG 58.300 47.619 0.00 0.00 0.00 4.44
2229 2294 5.580691 TCATAAGACTCCACAGCATTTAACG 59.419 40.000 0.00 0.00 0.00 3.18
2230 2295 6.985188 TCATAAGACTCCACAGCATTTAAC 57.015 37.500 0.00 0.00 0.00 2.01
2231 2296 7.168219 AGTTCATAAGACTCCACAGCATTTAA 58.832 34.615 0.00 0.00 0.00 1.52
2232 2297 6.711277 AGTTCATAAGACTCCACAGCATTTA 58.289 36.000 0.00 0.00 0.00 1.40
2233 2298 5.564550 AGTTCATAAGACTCCACAGCATTT 58.435 37.500 0.00 0.00 0.00 2.32
2234 2299 5.046014 AGAGTTCATAAGACTCCACAGCATT 60.046 40.000 0.96 0.00 0.00 3.56
2235 2300 4.469227 AGAGTTCATAAGACTCCACAGCAT 59.531 41.667 0.96 0.00 0.00 3.79
2236 2301 3.834813 AGAGTTCATAAGACTCCACAGCA 59.165 43.478 0.96 0.00 0.00 4.41
2237 2302 4.081972 TCAGAGTTCATAAGACTCCACAGC 60.082 45.833 0.96 0.00 0.00 4.40
2238 2303 5.651387 TCAGAGTTCATAAGACTCCACAG 57.349 43.478 0.96 0.00 0.00 3.66
2239 2304 6.438741 AGATTCAGAGTTCATAAGACTCCACA 59.561 38.462 0.96 0.00 0.00 4.17
2240 2305 6.872920 AGATTCAGAGTTCATAAGACTCCAC 58.127 40.000 0.96 0.00 0.00 4.02
2241 2306 6.665248 TGAGATTCAGAGTTCATAAGACTCCA 59.335 38.462 0.96 0.00 0.00 3.86
2242 2307 7.106439 TGAGATTCAGAGTTCATAAGACTCC 57.894 40.000 0.96 0.00 0.00 3.85
2243 2308 9.598517 AAATGAGATTCAGAGTTCATAAGACTC 57.401 33.333 0.00 0.00 30.53 3.36
2251 2316 9.730705 ACAAAGATAAATGAGATTCAGAGTTCA 57.269 29.630 0.00 0.00 0.00 3.18
2259 2324 9.890352 GCAAGGATACAAAGATAAATGAGATTC 57.110 33.333 0.00 0.00 41.41 2.52
2260 2325 9.412460 TGCAAGGATACAAAGATAAATGAGATT 57.588 29.630 0.00 0.00 41.41 2.40
2261 2326 8.985315 TGCAAGGATACAAAGATAAATGAGAT 57.015 30.769 0.00 0.00 41.41 2.75
2262 2327 7.012704 GCTGCAAGGATACAAAGATAAATGAGA 59.987 37.037 0.00 0.00 41.41 3.27
2263 2328 7.013083 AGCTGCAAGGATACAAAGATAAATGAG 59.987 37.037 1.02 0.00 41.41 2.90
2264 2329 6.830324 AGCTGCAAGGATACAAAGATAAATGA 59.170 34.615 1.02 0.00 41.41 2.57
2265 2330 7.035840 AGCTGCAAGGATACAAAGATAAATG 57.964 36.000 1.02 0.00 41.41 2.32
2266 2331 7.340232 TGAAGCTGCAAGGATACAAAGATAAAT 59.660 33.333 1.02 0.00 41.41 1.40
2267 2332 6.658816 TGAAGCTGCAAGGATACAAAGATAAA 59.341 34.615 1.02 0.00 41.41 1.40
2268 2333 6.179756 TGAAGCTGCAAGGATACAAAGATAA 58.820 36.000 1.02 0.00 41.41 1.75
2269 2334 5.744171 TGAAGCTGCAAGGATACAAAGATA 58.256 37.500 1.02 0.00 41.41 1.98
2270 2335 4.592942 TGAAGCTGCAAGGATACAAAGAT 58.407 39.130 1.02 0.00 41.41 2.40
2271 2336 4.019792 TGAAGCTGCAAGGATACAAAGA 57.980 40.909 1.02 0.00 41.41 2.52
2272 2337 4.479619 GTTGAAGCTGCAAGGATACAAAG 58.520 43.478 7.60 0.00 41.41 2.77
2273 2338 3.255642 GGTTGAAGCTGCAAGGATACAAA 59.744 43.478 7.60 0.00 41.41 2.83
2274 2339 2.819608 GGTTGAAGCTGCAAGGATACAA 59.180 45.455 7.60 0.00 41.41 2.41
2275 2340 2.436417 GGTTGAAGCTGCAAGGATACA 58.564 47.619 7.60 0.00 41.41 2.29
2276 2341 1.745653 GGGTTGAAGCTGCAAGGATAC 59.254 52.381 7.60 0.00 0.00 2.24
2277 2342 1.354031 TGGGTTGAAGCTGCAAGGATA 59.646 47.619 7.60 0.00 0.00 2.59
2278 2343 0.112995 TGGGTTGAAGCTGCAAGGAT 59.887 50.000 7.60 0.00 0.00 3.24
2279 2344 0.112995 ATGGGTTGAAGCTGCAAGGA 59.887 50.000 7.60 0.00 0.00 3.36
2280 2345 0.971386 AATGGGTTGAAGCTGCAAGG 59.029 50.000 7.60 0.00 0.00 3.61
2281 2346 3.940209 TTAATGGGTTGAAGCTGCAAG 57.060 42.857 7.60 0.00 0.00 4.01
2282 2347 4.567971 CATTTAATGGGTTGAAGCTGCAA 58.432 39.130 1.85 1.85 0.00 4.08
2283 2348 3.617045 GCATTTAATGGGTTGAAGCTGCA 60.617 43.478 7.08 0.00 0.00 4.41
2284 2349 2.931969 GCATTTAATGGGTTGAAGCTGC 59.068 45.455 7.08 0.00 0.00 5.25
2285 2350 4.460948 AGCATTTAATGGGTTGAAGCTG 57.539 40.909 7.08 0.00 0.00 4.24
2286 2351 5.011943 TGAAAGCATTTAATGGGTTGAAGCT 59.988 36.000 7.08 0.00 39.27 3.74
2287 2352 5.237048 TGAAAGCATTTAATGGGTTGAAGC 58.763 37.500 7.08 0.00 39.27 3.86
2288 2353 7.277098 CAGATGAAAGCATTTAATGGGTTGAAG 59.723 37.037 7.08 0.00 39.27 3.02
2289 2354 7.098477 CAGATGAAAGCATTTAATGGGTTGAA 58.902 34.615 7.08 0.00 39.27 2.69
2290 2355 6.351202 CCAGATGAAAGCATTTAATGGGTTGA 60.351 38.462 7.08 0.00 39.27 3.18
2291 2356 5.813672 CCAGATGAAAGCATTTAATGGGTTG 59.186 40.000 7.08 0.00 39.27 3.77
2292 2357 5.484998 ACCAGATGAAAGCATTTAATGGGTT 59.515 36.000 7.08 0.00 39.27 4.11
2293 2358 5.025453 ACCAGATGAAAGCATTTAATGGGT 58.975 37.500 7.08 0.00 39.27 4.51
2294 2359 5.603170 ACCAGATGAAAGCATTTAATGGG 57.397 39.130 7.08 0.00 39.27 4.00
2295 2360 7.098477 TCAAACCAGATGAAAGCATTTAATGG 58.902 34.615 7.08 0.00 39.27 3.16
2296 2361 8.437742 GTTCAAACCAGATGAAAGCATTTAATG 58.562 33.333 0.00 0.00 39.27 1.90
2297 2362 8.370182 AGTTCAAACCAGATGAAAGCATTTAAT 58.630 29.630 0.00 0.00 39.27 1.40
2298 2363 7.725251 AGTTCAAACCAGATGAAAGCATTTAA 58.275 30.769 0.00 0.00 39.27 1.52
2299 2364 7.231317 AGAGTTCAAACCAGATGAAAGCATTTA 59.769 33.333 0.00 0.00 39.27 1.40
2300 2365 6.041296 AGAGTTCAAACCAGATGAAAGCATTT 59.959 34.615 0.00 0.00 43.98 2.32
2301 2366 5.537674 AGAGTTCAAACCAGATGAAAGCATT 59.462 36.000 0.00 0.00 38.44 3.56
2302 2367 5.075493 AGAGTTCAAACCAGATGAAAGCAT 58.925 37.500 0.00 0.00 38.44 3.79
2303 2368 4.464008 AGAGTTCAAACCAGATGAAAGCA 58.536 39.130 0.00 0.00 38.44 3.91
2304 2369 5.444663 AAGAGTTCAAACCAGATGAAAGC 57.555 39.130 0.00 0.00 38.44 3.51
2305 2370 6.039717 TCCAAAGAGTTCAAACCAGATGAAAG 59.960 38.462 0.00 0.00 38.44 2.62
2306 2371 5.890985 TCCAAAGAGTTCAAACCAGATGAAA 59.109 36.000 0.00 0.00 38.44 2.69
2405 2470 1.066143 ACAGGGTGATGGCTTTCTACG 60.066 52.381 0.00 0.00 0.00 3.51
2417 2482 2.099652 CTGCCGTCAAGACAGGGTGA 62.100 60.000 11.19 0.00 0.00 4.02
2436 2501 3.188460 TGAATAACCTGCGAAGAAACAGC 59.812 43.478 0.00 0.00 32.37 4.40
2447 2512 1.839424 ACCAAGCCTGAATAACCTGC 58.161 50.000 0.00 0.00 0.00 4.85
2546 2611 4.642885 TGGAAATGAGAAGAAAAACACGGT 59.357 37.500 0.00 0.00 0.00 4.83
2549 2614 6.476706 CCAACTGGAAATGAGAAGAAAAACAC 59.523 38.462 0.00 0.00 37.39 3.32
2628 2694 4.354662 ACTCGGAGGGTTTCTCTTAGAAT 58.645 43.478 10.23 0.00 42.10 2.40
2670 2736 5.428253 AGACACCGAGTATAATGTGCAAAT 58.572 37.500 0.00 0.00 31.98 2.32
2684 2750 6.462073 TTTCGAAATTTAGAAGACACCGAG 57.538 37.500 6.47 0.00 0.00 4.63
2721 2788 3.269381 AGGGGTGGTTCACATATCACAAT 59.731 43.478 0.38 0.00 35.86 2.71
2729 2796 2.758130 ACAAAAAGGGGTGGTTCACAT 58.242 42.857 0.38 0.00 35.86 3.21
2737 2804 7.519032 TTACATAGAGAAACAAAAAGGGGTG 57.481 36.000 0.00 0.00 0.00 4.61
2859 2927 6.527057 AACGCTACTATAAGAGGTCAAACT 57.473 37.500 0.00 0.00 0.00 2.66
2864 2932 6.631971 AGGTAAACGCTACTATAAGAGGTC 57.368 41.667 0.00 0.00 0.00 3.85
2890 2958 6.169800 GGGTGAGATGATAAAGAATAGCTCC 58.830 44.000 0.00 0.00 0.00 4.70
2891 2959 5.866633 CGGGTGAGATGATAAAGAATAGCTC 59.133 44.000 0.00 0.00 0.00 4.09
2894 2962 5.541845 TGCGGGTGAGATGATAAAGAATAG 58.458 41.667 0.00 0.00 0.00 1.73
2895 2963 5.545063 TGCGGGTGAGATGATAAAGAATA 57.455 39.130 0.00 0.00 0.00 1.75
2896 2964 4.422073 TGCGGGTGAGATGATAAAGAAT 57.578 40.909 0.00 0.00 0.00 2.40
2897 2965 3.904800 TGCGGGTGAGATGATAAAGAA 57.095 42.857 0.00 0.00 0.00 2.52
2898 2966 3.904800 TTGCGGGTGAGATGATAAAGA 57.095 42.857 0.00 0.00 0.00 2.52
2899 2967 4.963276 TTTTGCGGGTGAGATGATAAAG 57.037 40.909 0.00 0.00 0.00 1.85
2944 3012 6.806751 ACGTCTGCTACATAGATGTTGTAAT 58.193 36.000 0.00 0.00 40.53 1.89
2969 3037 9.752961 TGCGAGCTTTATATACATAAACTTACA 57.247 29.630 0.00 0.00 33.88 2.41
2992 3060 2.676839 AGAACATCAGAAGAAGCATGCG 59.323 45.455 13.01 0.00 0.00 4.73
3025 3093 9.099454 CAAGTCTAATATAGTGAGGGAAACAAC 57.901 37.037 0.00 0.00 0.00 3.32
3026 3094 8.822805 ACAAGTCTAATATAGTGAGGGAAACAA 58.177 33.333 0.00 0.00 0.00 2.83
3028 3096 8.475639 TCACAAGTCTAATATAGTGAGGGAAAC 58.524 37.037 0.00 0.00 32.76 2.78
3095 3164 5.800296 TCAGAATCATACGAAGGGTCAAAA 58.200 37.500 0.00 0.00 0.00 2.44
3181 3250 2.443255 CCTTACCATACTCTGCCCCAAT 59.557 50.000 0.00 0.00 0.00 3.16
3194 3263 6.256053 ACTGAATGTTTCCAATCCTTACCAT 58.744 36.000 0.00 0.00 0.00 3.55
3272 3341 1.203174 CCCAAGGTCCACCCTGAAATT 60.203 52.381 0.00 0.00 45.47 1.82
3391 3460 5.654603 TGATACTTCTTCCGAGCTAAACA 57.345 39.130 0.00 0.00 0.00 2.83
3458 3527 1.953686 GTTGCAGAGTTAAGGTGCCAA 59.046 47.619 0.00 0.00 36.31 4.52
3490 3559 3.049080 GCCTCACATCTGGGGGTCC 62.049 68.421 0.00 0.00 38.72 4.46
3493 3562 0.918983 TTTAGCCTCACATCTGGGGG 59.081 55.000 0.00 0.00 38.72 5.40
3499 3568 8.604890 GTTCTACAATTAGTTTAGCCTCACATC 58.395 37.037 0.00 0.00 0.00 3.06
3584 3653 6.010850 AGGAGGGTTTTAGAAACCAGAAATC 58.989 40.000 20.56 11.37 45.61 2.17
3601 3670 3.118531 AGATGATGTTGCTTAGGAGGGT 58.881 45.455 0.00 0.00 0.00 4.34
3654 3723 5.814705 TGGTTAAATTTGGAAAACTGTGCAG 59.185 36.000 0.00 0.00 0.00 4.41
3728 3797 1.002315 ACCTGTTTGATGCCCAAATGC 59.998 47.619 4.94 0.00 45.48 3.56
3800 3869 5.023533 TGAAGTGCTTGTATCCATAGTCC 57.976 43.478 0.00 0.00 0.00 3.85
3865 3934 4.554036 GAGGGCTGCGTGATCCCC 62.554 72.222 0.00 0.00 40.97 4.81
3890 3960 8.705048 ACTCGTTCCTAGACAAAATTTATCTC 57.295 34.615 7.90 0.00 0.00 2.75
3904 3974 4.815846 GGACTACTCCTAACTCGTTCCTAG 59.184 50.000 0.00 0.00 33.07 3.02
3939 4009 3.632189 GCGCAATTTAAATCTAGCCAGG 58.368 45.455 0.30 0.00 0.00 4.45
3941 4011 2.540769 GCGCGCAATTTAAATCTAGCCA 60.541 45.455 29.10 0.00 0.00 4.75
3946 4016 1.396996 ACGAGCGCGCAATTTAAATCT 59.603 42.857 35.10 8.08 42.48 2.40
3952 4022 0.247655 CATACACGAGCGCGCAATTT 60.248 50.000 35.10 13.12 42.48 1.82
3953 4023 1.348250 CATACACGAGCGCGCAATT 59.652 52.632 35.10 13.58 42.48 2.32
3965 4035 9.878599 GGAAGTTATTTACATGCATACATACAC 57.121 33.333 0.00 0.00 33.67 2.90
3976 4046 8.184192 CACTAGCCTTTGGAAGTTATTTACATG 58.816 37.037 0.00 0.00 27.16 3.21
3987 4057 3.077359 CAAGGACACTAGCCTTTGGAAG 58.923 50.000 0.00 0.00 42.99 3.46
4012 4082 2.040947 TGACCATTGACCATTGGCACTA 59.959 45.455 1.54 0.00 35.76 2.74
4013 4083 1.203038 TGACCATTGACCATTGGCACT 60.203 47.619 1.54 0.00 35.76 4.40
4014 4084 1.255882 TGACCATTGACCATTGGCAC 58.744 50.000 1.54 0.00 35.76 5.01
4015 4085 1.894466 CTTGACCATTGACCATTGGCA 59.106 47.619 1.54 0.00 35.76 4.92
4016 4086 2.165030 CTCTTGACCATTGACCATTGGC 59.835 50.000 1.54 0.00 35.76 4.52
4017 4087 2.165030 GCTCTTGACCATTGACCATTGG 59.835 50.000 0.00 0.00 37.73 3.16
4018 4088 2.821378 TGCTCTTGACCATTGACCATTG 59.179 45.455 0.00 0.00 0.00 2.82
4019 4089 3.159213 TGCTCTTGACCATTGACCATT 57.841 42.857 0.00 0.00 0.00 3.16
4020 4090 2.885135 TGCTCTTGACCATTGACCAT 57.115 45.000 0.00 0.00 0.00 3.55
4021 4091 2.885135 ATGCTCTTGACCATTGACCA 57.115 45.000 0.00 0.00 0.00 4.02
4022 4092 4.125703 CTCTATGCTCTTGACCATTGACC 58.874 47.826 0.00 0.00 0.00 4.02
4023 4093 4.125703 CCTCTATGCTCTTGACCATTGAC 58.874 47.826 0.00 0.00 0.00 3.18
4024 4094 3.432749 GCCTCTATGCTCTTGACCATTGA 60.433 47.826 0.00 0.00 0.00 2.57
4025 4095 2.877168 GCCTCTATGCTCTTGACCATTG 59.123 50.000 0.00 0.00 0.00 2.82
4065 4135 0.597568 TCAAAAGCATCTTGGCGGTG 59.402 50.000 0.00 0.00 39.27 4.94
4066 4136 0.883833 CTCAAAAGCATCTTGGCGGT 59.116 50.000 0.00 0.00 39.27 5.68
4079 4149 3.394274 TCTCATCCACCTTGTCCTCAAAA 59.606 43.478 0.00 0.00 32.87 2.44
4084 4154 2.630889 TCTCTCATCCACCTTGTCCT 57.369 50.000 0.00 0.00 0.00 3.85
4085 4155 3.198635 TGAATCTCTCATCCACCTTGTCC 59.801 47.826 0.00 0.00 0.00 4.02
4086 4156 4.478206 TGAATCTCTCATCCACCTTGTC 57.522 45.455 0.00 0.00 0.00 3.18
4088 4158 4.582869 TGTTGAATCTCTCATCCACCTTG 58.417 43.478 0.00 0.00 32.78 3.61
4107 4177 4.202151 GCAACCTTCAACTCCAAAGATGTT 60.202 41.667 0.00 0.00 0.00 2.71
4150 4223 5.431765 CCTTGCCATCATTTACTAGACTGT 58.568 41.667 0.00 0.00 0.00 3.55
4179 4252 1.101331 CTGCTTGAGGAATGGGAAGC 58.899 55.000 0.00 0.00 41.03 3.86
4180 4253 2.503895 ACTGCTTGAGGAATGGGAAG 57.496 50.000 0.00 0.00 0.00 3.46
4181 4254 2.892852 CAAACTGCTTGAGGAATGGGAA 59.107 45.455 0.00 0.00 37.17 3.97
4182 4255 2.517959 CAAACTGCTTGAGGAATGGGA 58.482 47.619 0.00 0.00 37.17 4.37
4183 4256 1.067354 GCAAACTGCTTGAGGAATGGG 60.067 52.381 0.00 0.00 40.96 4.00
4239 4351 2.100631 CCTTGCGTCTTGGCTACCG 61.101 63.158 0.00 0.00 0.00 4.02
4251 4363 1.808411 TAGAAAGTGAAGGCCTTGCG 58.192 50.000 26.25 0.00 0.00 4.85
4258 4370 1.017387 GCGGCCATAGAAAGTGAAGG 58.983 55.000 2.24 0.00 0.00 3.46
4265 4377 0.036765 AACGTCAGCGGCCATAGAAA 60.037 50.000 2.24 0.00 43.45 2.52
4266 4378 0.459585 GAACGTCAGCGGCCATAGAA 60.460 55.000 2.24 0.00 43.45 2.10
4291 4403 3.491792 GCTGACATCCCACTAGACTAAGC 60.492 52.174 0.00 0.00 0.00 3.09
4310 4422 6.865205 CCCTTTGACAAAAATAAGAAGAGCTG 59.135 38.462 1.62 0.00 0.00 4.24
4353 4466 2.582636 ACCATAAAGACCCATGAAGCCT 59.417 45.455 0.00 0.00 0.00 4.58
4408 4522 6.488344 TGAAGTACAACCACATGAAAATGCTA 59.512 34.615 0.00 0.00 0.00 3.49
4520 4638 6.263842 ACACAAATGAATAGGATAGCCACATG 59.736 38.462 0.00 0.00 36.29 3.21
4525 4643 5.067674 TGCAACACAAATGAATAGGATAGCC 59.932 40.000 0.00 0.00 0.00 3.93
4567 4685 1.664016 GGTTCAGCTTGTTCATGCACG 60.664 52.381 11.97 0.00 0.00 5.34
4577 4695 0.675083 TGCCATGTTGGTTCAGCTTG 59.325 50.000 0.00 0.00 40.46 4.01
4578 4696 1.342174 CTTGCCATGTTGGTTCAGCTT 59.658 47.619 0.00 0.00 40.46 3.74
4579 4697 0.963962 CTTGCCATGTTGGTTCAGCT 59.036 50.000 0.00 0.00 40.46 4.24
4581 4699 2.361757 TGAACTTGCCATGTTGGTTCAG 59.638 45.455 0.10 0.00 40.47 3.02
4630 4748 7.669427 TGTTTCAGGATTGTGCTAATTGATTT 58.331 30.769 0.00 0.00 0.00 2.17
4671 4789 6.537566 CCTGTGTTTCGATAAGATGTTTCAG 58.462 40.000 0.00 0.00 0.00 3.02
4684 4802 0.884704 GCTGAAGGCCTGTGTTTCGA 60.885 55.000 5.69 0.00 34.27 3.71
4704 4822 3.063588 GCTATGTCTTACTCGTTTTGCCC 59.936 47.826 0.00 0.00 0.00 5.36
4716 4834 8.450964 GTTGTTTTAAGAGCATGCTATGTCTTA 58.549 33.333 22.74 19.93 34.67 2.10
4730 4848 3.632145 ACTGCCCAGTGTTGTTTTAAGAG 59.368 43.478 0.00 0.00 40.75 2.85
4735 4853 2.094234 GTGAACTGCCCAGTGTTGTTTT 60.094 45.455 1.07 0.00 41.58 2.43
4744 4862 1.679139 TGTTTGAGTGAACTGCCCAG 58.321 50.000 0.00 0.00 0.00 4.45
4746 4864 2.508526 AGATGTTTGAGTGAACTGCCC 58.491 47.619 0.00 0.00 0.00 5.36
4781 4900 4.020928 TCCTGGTTGTTACATCGCTAAAGA 60.021 41.667 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.