Multiple sequence alignment - TraesCS6B01G407700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G407700 chr6B 100.000 3344 0 0 1 3344 682135100 682138443 0.000000e+00 6176.0
1 TraesCS6B01G407700 chr6B 93.823 1117 66 1 981 2094 682312820 682311704 0.000000e+00 1677.0
2 TraesCS6B01G407700 chr6B 96.914 648 18 1 1957 2602 682310376 682309729 0.000000e+00 1085.0
3 TraesCS6B01G407700 chr6B 91.520 684 29 13 293 962 682313978 682313310 0.000000e+00 915.0
4 TraesCS6B01G407700 chr6B 96.774 310 8 2 2 310 539199683 539199375 1.780000e-142 516.0
5 TraesCS6B01G407700 chr6B 85.012 407 39 9 2637 3041 682316696 682316310 8.700000e-106 394.0
6 TraesCS6B01G407700 chr6B 85.000 400 38 10 2637 3034 682121408 682121787 1.460000e-103 387.0
7 TraesCS6B01G407700 chr6B 88.710 62 4 3 432 492 467454404 467454345 4.630000e-09 73.1
8 TraesCS6B01G407700 chr6B 100.000 29 0 0 807 835 682135808 682135836 2.000000e-03 54.7
9 TraesCS6B01G407700 chr6B 100.000 29 0 0 807 835 682313558 682313530 2.000000e-03 54.7
10 TraesCS6B01G407700 chr6B 100.000 28 0 0 777 804 682135712 682135685 6.000000e-03 52.8
11 TraesCS6B01G407700 chr6B 100.000 28 0 0 586 613 682135903 682135876 6.000000e-03 52.8
12 TraesCS6B01G407700 chr6D 93.064 1932 113 10 829 2750 449971479 449973399 0.000000e+00 2806.0
13 TraesCS6B01G407700 chr6D 86.691 2179 241 29 829 2989 449922005 449924152 0.000000e+00 2372.0
14 TraesCS6B01G407700 chr6D 83.591 1554 212 22 971 2516 449993960 449995478 0.000000e+00 1417.0
15 TraesCS6B01G407700 chr6D 92.786 402 22 3 2749 3149 449973560 449973955 2.890000e-160 575.0
16 TraesCS6B01G407700 chr6D 84.131 397 43 10 2638 3034 449920781 449921157 1.900000e-97 366.0
17 TraesCS6B01G407700 chr6D 94.845 194 9 1 3147 3340 463798319 463798511 5.420000e-78 302.0
18 TraesCS6B01G407700 chr6D 86.111 144 16 2 503 646 297668904 297669043 5.780000e-33 152.0
19 TraesCS6B01G407700 chr6D 87.097 62 5 3 432 492 302053833 302053774 2.150000e-07 67.6
20 TraesCS6B01G407700 chr6A 92.746 1668 104 6 826 2487 595497997 595499653 0.000000e+00 2394.0
21 TraesCS6B01G407700 chr6A 89.697 495 29 10 293 774 595493467 595493952 2.210000e-171 612.0
22 TraesCS6B01G407700 chr6A 91.111 270 15 6 2479 2745 595501969 595502232 1.140000e-94 357.0
23 TraesCS6B01G407700 chr6A 83.750 80 11 1 440 517 414872723 414872802 1.290000e-09 75.0
24 TraesCS6B01G407700 chr5B 99.315 292 2 0 1 292 314264333 314264624 2.280000e-146 529.0
25 TraesCS6B01G407700 chr5B 98.983 295 3 0 1 295 522774564 522774270 2.280000e-146 529.0
26 TraesCS6B01G407700 chr5B 95.288 191 9 0 3150 3340 598743000 598742810 1.510000e-78 303.0
27 TraesCS6B01G407700 chr2B 98.339 301 5 0 1 301 11718679 11718979 2.280000e-146 529.0
28 TraesCS6B01G407700 chr2B 98.328 299 4 1 1 298 103747733 103748031 1.060000e-144 523.0
29 TraesCS6B01G407700 chr2B 92.453 106 8 0 3044 3149 493975628 493975523 5.780000e-33 152.0
30 TraesCS6B01G407700 chr1B 98.980 294 3 0 1 294 621301699 621301992 8.220000e-146 527.0
31 TraesCS6B01G407700 chr1B 98.976 293 3 0 1 293 83199523 83199815 2.960000e-145 525.0
32 TraesCS6B01G407700 chr1B 93.171 205 13 1 3137 3340 609703254 609703050 1.950000e-77 300.0
33 TraesCS6B01G407700 chrUn 98.644 295 4 0 1 295 85648053 85648347 1.060000e-144 523.0
34 TraesCS6B01G407700 chrUn 94.845 194 8 2 3150 3342 348131498 348131306 5.420000e-78 302.0
35 TraesCS6B01G407700 chr4B 98.328 299 4 1 1 298 445185204 445184906 1.060000e-144 523.0
36 TraesCS6B01G407700 chr4B 94.845 194 8 2 3150 3342 641640395 641640203 5.420000e-78 302.0
37 TraesCS6B01G407700 chr5D 95.812 191 8 0 3150 3340 537335341 537335151 3.240000e-80 309.0
38 TraesCS6B01G407700 chr5D 83.051 295 36 9 2638 2932 442365692 442365972 4.280000e-64 255.0
39 TraesCS6B01G407700 chr5D 86.885 61 6 2 432 492 217080281 217080339 2.150000e-07 67.6
40 TraesCS6B01G407700 chr5D 92.683 41 0 3 612 651 300756940 300756978 4.660000e-04 56.5
41 TraesCS6B01G407700 chr3A 95.312 192 9 0 3151 3342 482803248 482803057 4.190000e-79 305.0
42 TraesCS6B01G407700 chr3A 89.655 58 4 2 434 489 640841291 640841348 4.630000e-09 73.1
43 TraesCS6B01G407700 chr7D 95.288 191 9 0 3150 3340 225492705 225492515 1.510000e-78 303.0
44 TraesCS6B01G407700 chr7D 94.330 194 11 0 3147 3340 136519045 136518852 7.010000e-77 298.0
45 TraesCS6B01G407700 chr7D 83.390 295 35 9 2638 2932 179698590 179698310 9.200000e-66 261.0
46 TraesCS6B01G407700 chr3D 83.051 295 36 9 2638 2932 50834867 50835147 4.280000e-64 255.0
47 TraesCS6B01G407700 chr1D 83.051 295 36 9 2638 2932 460357381 460357661 4.280000e-64 255.0
48 TraesCS6B01G407700 chr2A 89.720 107 9 2 3045 3149 754471035 754470929 5.820000e-28 135.0
49 TraesCS6B01G407700 chr3B 96.000 50 2 0 440 489 447014902 447014853 7.690000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G407700 chr6B 682135100 682138443 3343 False 3115.35 6176 100.0000 1 3344 2 chr6B.!!$F2 3343
1 TraesCS6B01G407700 chr6B 682309729 682316696 6967 True 825.14 1677 93.4538 293 3041 5 chr6B.!!$R4 2748
2 TraesCS6B01G407700 chr6D 449971479 449973955 2476 False 1690.50 2806 92.9250 829 3149 2 chr6D.!!$F5 2320
3 TraesCS6B01G407700 chr6D 449993960 449995478 1518 False 1417.00 1417 83.5910 971 2516 1 chr6D.!!$F2 1545
4 TraesCS6B01G407700 chr6D 449920781 449924152 3371 False 1369.00 2372 85.4110 829 3034 2 chr6D.!!$F4 2205
5 TraesCS6B01G407700 chr6A 595497997 595502232 4235 False 1375.50 2394 91.9285 826 2745 2 chr6A.!!$F3 1919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 2760 0.252696 TGGGCCTACTCCTGTCATGT 60.253 55.0 4.53 0.0 0.0 3.21 F
1774 4695 0.745845 CAAGATCCTTCCCACGCCAG 60.746 60.0 0.00 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 4713 0.105593 TAGTAGGCCGAGTCGACGAT 59.894 55.0 15.64 0.0 35.09 3.73 R
3181 10063 0.037160 GGGACAAAAGGCCCTTACGA 59.963 55.0 0.00 0.0 41.31 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.844349 TCTTTGTGCTAGGCTTAGGATT 57.156 40.909 4.88 0.00 29.47 3.01
23 24 4.517285 TCTTTGTGCTAGGCTTAGGATTG 58.483 43.478 4.88 0.00 29.47 2.67
24 25 3.281727 TTGTGCTAGGCTTAGGATTGG 57.718 47.619 4.88 0.00 29.47 3.16
26 27 1.490910 GTGCTAGGCTTAGGATTGGGT 59.509 52.381 4.88 0.00 29.47 4.51
27 28 1.768870 TGCTAGGCTTAGGATTGGGTC 59.231 52.381 4.88 0.00 0.00 4.46
29 30 2.439880 GCTAGGCTTAGGATTGGGTCTT 59.560 50.000 4.88 0.00 0.00 3.01
31 32 2.279173 AGGCTTAGGATTGGGTCTTGT 58.721 47.619 0.00 0.00 0.00 3.16
34 35 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
38 39 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
40 41 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
42 43 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
43 44 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
44 45 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
45 46 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
47 48 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
48 49 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
49 50 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
51 52 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
52 53 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
54 55 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
64 65 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
70 71 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
71 72 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
72 73 6.147821 CCTAATGATGTGATCCCGTTATCAAC 59.852 42.308 0.00 0.00 37.61 3.18
86 87 4.342772 GTTATCAACGACATCCAATGTGC 58.657 43.478 0.00 0.00 45.03 4.57
91 92 1.097232 CGACATCCAATGTGCATGGT 58.903 50.000 4.77 0.00 45.03 3.55
92 93 1.064505 CGACATCCAATGTGCATGGTC 59.935 52.381 4.77 0.00 45.03 4.02
93 94 2.093890 GACATCCAATGTGCATGGTCA 58.906 47.619 4.77 0.00 45.03 4.02
94 95 2.097036 ACATCCAATGTGCATGGTCAG 58.903 47.619 4.77 0.00 43.01 3.51
95 96 1.407618 CATCCAATGTGCATGGTCAGG 59.592 52.381 4.77 0.00 39.09 3.86
96 97 0.697658 TCCAATGTGCATGGTCAGGA 59.302 50.000 4.77 0.00 39.09 3.86
97 98 1.075212 TCCAATGTGCATGGTCAGGAA 59.925 47.619 4.77 0.00 39.09 3.36
99 100 2.353011 CCAATGTGCATGGTCAGGAAAC 60.353 50.000 0.00 0.00 33.08 2.78
101 102 0.888736 TGTGCATGGTCAGGAAACCG 60.889 55.000 0.00 0.00 42.62 4.44
105 106 1.467342 GCATGGTCAGGAAACCGTAAC 59.533 52.381 0.00 0.00 42.62 2.50
107 108 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
108 109 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
109 110 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
110 111 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
111 112 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
112 113 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
113 114 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
114 115 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
115 116 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
116 117 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
118 119 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
119 120 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
120 121 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
121 122 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
122 123 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
123 124 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
124 125 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
126 127 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
127 128 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
130 131 7.014326 ACCATCTATTGATCAACGAGCTAGTTA 59.986 37.037 11.07 2.13 32.35 2.24
131 132 7.867909 CCATCTATTGATCAACGAGCTAGTTAA 59.132 37.037 11.07 0.00 32.35 2.01
132 133 8.695284 CATCTATTGATCAACGAGCTAGTTAAC 58.305 37.037 11.07 7.31 32.35 2.01
133 134 7.997482 TCTATTGATCAACGAGCTAGTTAACT 58.003 34.615 11.07 13.68 32.35 2.24
134 135 9.117183 TCTATTGATCAACGAGCTAGTTAACTA 57.883 33.333 11.07 14.52 32.35 2.24
135 136 9.388346 CTATTGATCAACGAGCTAGTTAACTAG 57.612 37.037 30.40 30.40 46.63 2.57
136 137 6.997239 TGATCAACGAGCTAGTTAACTAGA 57.003 37.500 36.09 19.69 46.80 2.43
137 138 7.017498 TGATCAACGAGCTAGTTAACTAGAG 57.983 40.000 36.09 27.88 46.80 2.43
138 139 5.814764 TCAACGAGCTAGTTAACTAGAGG 57.185 43.478 36.09 26.51 46.80 3.69
139 140 4.096081 TCAACGAGCTAGTTAACTAGAGGC 59.904 45.833 36.09 25.29 46.80 4.70
141 142 4.271661 ACGAGCTAGTTAACTAGAGGCTT 58.728 43.478 36.09 19.30 46.80 4.35
144 145 5.528320 CGAGCTAGTTAACTAGAGGCTTACT 59.472 44.000 36.09 24.33 46.80 2.24
145 146 6.705381 CGAGCTAGTTAACTAGAGGCTTACTA 59.295 42.308 36.09 6.50 46.80 1.82
147 148 6.999871 AGCTAGTTAACTAGAGGCTTACTAGG 59.000 42.308 36.09 13.94 46.80 3.02
148 149 6.207221 GCTAGTTAACTAGAGGCTTACTAGGG 59.793 46.154 36.09 13.57 46.80 3.53
150 151 6.128486 AGTTAACTAGAGGCTTACTAGGGAC 58.872 44.000 6.26 8.89 40.86 4.46
152 153 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
156 157 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
158 159 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
160 161 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
161 162 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
162 163 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
164 165 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
165 166 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
166 167 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
167 168 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
172 173 3.688694 TGGTGTTGTCTATGTACCCAC 57.311 47.619 0.00 0.00 0.00 4.61
173 174 2.973406 TGGTGTTGTCTATGTACCCACA 59.027 45.455 0.00 0.00 39.52 4.17
174 175 3.244284 TGGTGTTGTCTATGTACCCACAC 60.244 47.826 0.00 0.00 37.54 3.82
175 176 3.244284 GGTGTTGTCTATGTACCCACACA 60.244 47.826 0.00 0.00 37.54 3.72
176 177 4.564821 GGTGTTGTCTATGTACCCACACAT 60.565 45.833 0.00 0.00 41.88 3.21
177 178 4.391830 GTGTTGTCTATGTACCCACACATG 59.608 45.833 0.00 0.00 39.46 3.21
178 179 4.041075 TGTTGTCTATGTACCCACACATGT 59.959 41.667 0.00 0.00 39.46 3.21
181 182 6.156748 TGTCTATGTACCCACACATGTATC 57.843 41.667 0.00 0.00 39.46 2.24
183 184 6.183360 TGTCTATGTACCCACACATGTATCTG 60.183 42.308 0.00 0.00 39.46 2.90
185 186 4.736126 TGTACCCACACATGTATCTGAG 57.264 45.455 0.00 0.00 0.00 3.35
186 187 4.093743 TGTACCCACACATGTATCTGAGT 58.906 43.478 0.00 0.00 0.00 3.41
188 189 4.640771 ACCCACACATGTATCTGAGTTT 57.359 40.909 0.00 0.00 0.00 2.66
190 191 3.941483 CCCACACATGTATCTGAGTTTCC 59.059 47.826 0.00 0.00 0.00 3.13
192 193 5.104941 CCCACACATGTATCTGAGTTTCCTA 60.105 44.000 0.00 0.00 0.00 2.94
195 196 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
196 197 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
198 199 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
199 200 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
200 201 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
292 293 4.792068 CCTCTAGGGCATATTTCCAACAA 58.208 43.478 0.00 0.00 0.00 2.83
295 296 5.385198 TCTAGGGCATATTTCCAACAATCC 58.615 41.667 0.00 0.00 0.00 3.01
325 2752 2.579410 TTGAAAAGTGGGCCTACTCC 57.421 50.000 23.48 14.70 0.00 3.85
326 2753 1.742308 TGAAAAGTGGGCCTACTCCT 58.258 50.000 23.48 12.48 0.00 3.69
333 2760 0.252696 TGGGCCTACTCCTGTCATGT 60.253 55.000 4.53 0.00 0.00 3.21
623 3058 2.890808 TCTCATCATTAGTCCGTGGC 57.109 50.000 0.00 0.00 0.00 5.01
647 3082 2.728225 CGCACGGACACTCAACTAGTAG 60.728 54.545 0.00 0.00 35.76 2.57
662 3097 9.250624 CTCAACTAGTAGTATCTAAAATGCCAC 57.749 37.037 2.50 0.00 0.00 5.01
666 3101 8.634444 ACTAGTAGTATCTAAAATGCCACTGAG 58.366 37.037 0.00 0.00 0.00 3.35
688 3123 8.590719 TGAGTCTAGTACTAATACACATCTCG 57.409 38.462 14.38 0.00 39.07 4.04
707 3142 2.766263 TCGGTCTCTTGCATTGGATACT 59.234 45.455 0.00 0.00 37.61 2.12
734 3169 5.769662 GGGTGTTAAATGATGGAGATATGCA 59.230 40.000 0.00 0.00 0.00 3.96
735 3170 6.265196 GGGTGTTAAATGATGGAGATATGCAA 59.735 38.462 0.00 0.00 0.00 4.08
736 3171 7.201902 GGGTGTTAAATGATGGAGATATGCAAA 60.202 37.037 0.00 0.00 0.00 3.68
777 3212 9.991906 ATGCCACGTAATTTAGTACTAATACAT 57.008 29.630 15.92 4.48 33.30 2.29
778 3213 9.251792 TGCCACGTAATTTAGTACTAATACATG 57.748 33.333 15.92 13.81 33.30 3.21
779 3214 9.467258 GCCACGTAATTTAGTACTAATACATGA 57.533 33.333 17.73 4.96 33.30 3.07
1153 4066 2.923426 GGACGCCGATGGCTTCATGA 62.923 60.000 15.08 0.00 46.83 3.07
1187 4103 3.157680 CTTCCACCACCGTCCCTT 58.842 61.111 0.00 0.00 0.00 3.95
1395 4311 2.297895 CCTCCATCCGACCAACCCA 61.298 63.158 0.00 0.00 0.00 4.51
1506 4423 3.527253 ACACCATCATTCTGGGTAATCCA 59.473 43.478 0.00 0.00 44.79 3.41
1539 4456 2.676471 GGCATCGCCTTTGGGTGT 60.676 61.111 0.00 0.00 46.69 4.16
1774 4695 0.745845 CAAGATCCTTCCCACGCCAG 60.746 60.000 0.00 0.00 0.00 4.85
1780 4701 3.832237 CTTCCCACGCCAGCACACT 62.832 63.158 0.00 0.00 0.00 3.55
1792 4713 2.203139 CACACTTCCCACACGGCA 60.203 61.111 0.00 0.00 0.00 5.69
1887 4808 0.032678 CTATGTTCGAGCGGAGGCAT 59.967 55.000 0.00 0.00 43.41 4.40
1891 4812 2.645192 TTCGAGCGGAGGCATGACA 61.645 57.895 0.00 0.00 43.41 3.58
1928 4849 2.512515 GGATGCCGGCACAGAGAC 60.513 66.667 35.50 17.90 0.00 3.36
1934 4855 4.742201 CGGCACAGAGACCACCCG 62.742 72.222 0.00 0.00 0.00 5.28
2078 6464 2.753966 CGCGCATCCCAAGGTTGAG 61.754 63.158 8.75 0.00 0.00 3.02
2087 6473 0.895530 CCAAGGTTGAGGCTCGACTA 59.104 55.000 29.09 1.30 31.43 2.59
2193 6579 2.976271 GCAGTTGTTGTGCTTTGGG 58.024 52.632 0.00 0.00 37.96 4.12
2326 6712 3.966026 GAAGACGACACCGAGCCCG 62.966 68.421 0.00 0.00 39.50 6.13
2557 9273 8.554490 ACCACATCATTAGTTAGTTAGGATCT 57.446 34.615 0.00 0.00 0.00 2.75
2662 9381 7.019656 ACCATGCTTCCAAGGAAATTAAAAT 57.980 32.000 2.78 0.00 34.03 1.82
2674 9393 6.768483 AGGAAATTAAAATGGTGGACCTTTG 58.232 36.000 0.00 0.00 34.14 2.77
2727 9446 0.968901 TCGCACTGATTCCCGGTACT 60.969 55.000 0.00 0.00 31.91 2.73
2761 9642 9.502091 GTAACTTAAACCCTATGATATGATGCA 57.498 33.333 0.00 0.00 0.00 3.96
2792 9673 8.831715 TTTCCTTCCTTTAGCAATTGAAATTC 57.168 30.769 10.34 0.00 0.00 2.17
2825 9706 4.428209 CTCACACTACCATCTGATGACAC 58.572 47.826 18.92 0.00 0.00 3.67
2880 9761 7.083858 TGATGAAAAAGTTCCATTTCGACATC 58.916 34.615 0.00 0.00 38.16 3.06
2903 9784 1.059264 GGACGTCTCGAATTTTCAGCG 59.941 52.381 16.46 0.00 0.00 5.18
2997 9878 9.587772 GATACTAAGTTGATGTGTCAAGTGTAT 57.412 33.333 0.00 4.65 45.08 2.29
3003 9884 4.967036 TGATGTGTCAAGTGTATTGGACA 58.033 39.130 0.00 0.00 37.89 4.02
3015 9896 2.867109 ATTGGACACTGCAGCTAACT 57.133 45.000 15.27 0.00 0.00 2.24
3016 9897 3.981071 ATTGGACACTGCAGCTAACTA 57.019 42.857 15.27 0.00 0.00 2.24
3017 9898 3.762407 TTGGACACTGCAGCTAACTAA 57.238 42.857 15.27 4.65 0.00 2.24
3018 9899 3.981071 TGGACACTGCAGCTAACTAAT 57.019 42.857 15.27 0.00 0.00 1.73
3060 9942 4.871933 TTGATTTTTCTGAGGGAAAGCC 57.128 40.909 0.00 0.00 43.68 4.35
3065 9947 2.276732 TTCTGAGGGAAAGCCAGTTG 57.723 50.000 0.00 0.00 35.15 3.16
3099 9981 4.647964 CTGGTTCGAAAATGTTACATCCG 58.352 43.478 0.00 3.59 0.00 4.18
3108 9990 6.735063 CGAAAATGTTACATCCGTTAAGACAC 59.265 38.462 0.00 0.00 0.00 3.67
3125 10007 5.786264 AGACACGAGGAAGAAGAAAACTA 57.214 39.130 0.00 0.00 0.00 2.24
3129 10011 4.686554 CACGAGGAAGAAGAAAACTAGGTG 59.313 45.833 0.00 0.00 0.00 4.00
3135 10017 5.644206 GGAAGAAGAAAACTAGGTGGATCAC 59.356 44.000 0.00 0.00 0.00 3.06
3150 10032 4.810191 GGATCACCATCCTACCAGTATC 57.190 50.000 0.00 0.00 45.06 2.24
3151 10033 4.160329 GGATCACCATCCTACCAGTATCA 58.840 47.826 0.00 0.00 45.06 2.15
3152 10034 4.021016 GGATCACCATCCTACCAGTATCAC 60.021 50.000 0.00 0.00 45.06 3.06
3153 10035 4.265856 TCACCATCCTACCAGTATCACT 57.734 45.455 0.00 0.00 0.00 3.41
3154 10036 5.397553 TCACCATCCTACCAGTATCACTA 57.602 43.478 0.00 0.00 0.00 2.74
3155 10037 5.386060 TCACCATCCTACCAGTATCACTAG 58.614 45.833 0.00 0.00 0.00 2.57
3156 10038 5.103643 TCACCATCCTACCAGTATCACTAGT 60.104 44.000 0.00 0.00 0.00 2.57
3157 10039 6.102174 TCACCATCCTACCAGTATCACTAGTA 59.898 42.308 0.00 0.00 0.00 1.82
3158 10040 6.431543 CACCATCCTACCAGTATCACTAGTAG 59.568 46.154 0.00 5.31 39.23 2.57
3159 10041 6.332103 ACCATCCTACCAGTATCACTAGTAGA 59.668 42.308 11.83 0.00 41.08 2.59
3160 10042 7.147177 ACCATCCTACCAGTATCACTAGTAGAA 60.147 40.741 11.83 0.00 41.08 2.10
3161 10043 7.724506 CCATCCTACCAGTATCACTAGTAGAAA 59.275 40.741 11.83 2.90 41.08 2.52
3162 10044 9.132923 CATCCTACCAGTATCACTAGTAGAAAA 57.867 37.037 11.83 1.01 41.08 2.29
3163 10045 9.710818 ATCCTACCAGTATCACTAGTAGAAAAA 57.289 33.333 11.83 0.00 41.08 1.94
3164 10046 9.710818 TCCTACCAGTATCACTAGTAGAAAAAT 57.289 33.333 11.83 0.00 41.08 1.82
3165 10047 9.751542 CCTACCAGTATCACTAGTAGAAAAATG 57.248 37.037 11.83 0.00 41.08 2.32
3166 10048 9.751542 CTACCAGTATCACTAGTAGAAAAATGG 57.248 37.037 3.59 16.63 41.08 3.16
3167 10049 7.048512 ACCAGTATCACTAGTAGAAAAATGGC 58.951 38.462 3.59 0.00 0.00 4.40
3168 10050 6.483640 CCAGTATCACTAGTAGAAAAATGGCC 59.516 42.308 3.59 0.00 0.00 5.36
3169 10051 7.047891 CAGTATCACTAGTAGAAAAATGGCCA 58.952 38.462 8.56 8.56 0.00 5.36
3170 10052 7.552687 CAGTATCACTAGTAGAAAAATGGCCAA 59.447 37.037 10.96 0.00 0.00 4.52
3171 10053 8.275040 AGTATCACTAGTAGAAAAATGGCCAAT 58.725 33.333 10.96 0.00 0.00 3.16
3172 10054 7.961326 ATCACTAGTAGAAAAATGGCCAATT 57.039 32.000 10.96 4.20 0.00 2.32
3173 10055 7.156876 TCACTAGTAGAAAAATGGCCAATTG 57.843 36.000 10.96 0.00 0.00 2.32
3174 10056 6.719370 TCACTAGTAGAAAAATGGCCAATTGT 59.281 34.615 10.96 1.12 0.00 2.71
3175 10057 7.029563 CACTAGTAGAAAAATGGCCAATTGTC 58.970 38.462 15.04 15.04 0.00 3.18
3176 10058 5.405935 AGTAGAAAAATGGCCAATTGTCC 57.594 39.130 18.55 6.06 0.00 4.02
3177 10059 3.701205 AGAAAAATGGCCAATTGTCCC 57.299 42.857 18.55 4.32 0.00 4.46
3178 10060 2.028203 AGAAAAATGGCCAATTGTCCCG 60.028 45.455 18.55 0.00 0.00 5.14
3179 10061 0.612744 AAAATGGCCAATTGTCCCGG 59.387 50.000 10.96 0.00 0.00 5.73
3180 10062 0.544120 AAATGGCCAATTGTCCCGGT 60.544 50.000 10.96 0.00 0.00 5.28
3181 10063 0.544120 AATGGCCAATTGTCCCGGTT 60.544 50.000 10.96 0.00 0.00 4.44
3182 10064 0.970427 ATGGCCAATTGTCCCGGTTC 60.970 55.000 10.96 0.00 0.00 3.62
3183 10065 2.696759 GGCCAATTGTCCCGGTTCG 61.697 63.158 4.43 0.00 0.00 3.95
3184 10066 1.969589 GCCAATTGTCCCGGTTCGT 60.970 57.895 4.43 0.00 0.00 3.85
3185 10067 0.674269 GCCAATTGTCCCGGTTCGTA 60.674 55.000 4.43 0.00 0.00 3.43
3186 10068 1.810959 CCAATTGTCCCGGTTCGTAA 58.189 50.000 4.43 0.00 0.00 3.18
3187 10069 1.735571 CCAATTGTCCCGGTTCGTAAG 59.264 52.381 4.43 0.00 0.00 2.34
3188 10070 1.735571 CAATTGTCCCGGTTCGTAAGG 59.264 52.381 0.00 0.00 38.47 2.69
3189 10071 0.251073 ATTGTCCCGGTTCGTAAGGG 59.749 55.000 0.00 0.00 46.40 3.95
3190 10072 2.125391 GTCCCGGTTCGTAAGGGC 60.125 66.667 0.00 0.00 44.70 5.19
3191 10073 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
3192 10074 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
3193 10075 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
3194 10076 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
3195 10077 0.607217 CCGGTTCGTAAGGGCCTTTT 60.607 55.000 26.29 2.86 38.47 2.27
3196 10078 0.519961 CGGTTCGTAAGGGCCTTTTG 59.480 55.000 26.29 17.07 38.47 2.44
3197 10079 1.612676 GGTTCGTAAGGGCCTTTTGT 58.387 50.000 26.29 1.50 38.47 2.83
3198 10080 1.538512 GGTTCGTAAGGGCCTTTTGTC 59.461 52.381 26.29 11.62 38.47 3.18
3199 10081 1.538512 GTTCGTAAGGGCCTTTTGTCC 59.461 52.381 26.29 6.64 38.47 4.02
3200 10082 0.037160 TCGTAAGGGCCTTTTGTCCC 59.963 55.000 26.29 5.03 42.94 4.46
3204 10086 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
3205 10087 1.835267 GGGCCTTTTGTCCCGGTTT 60.835 57.895 0.84 0.00 32.00 3.27
3206 10088 1.404479 GGGCCTTTTGTCCCGGTTTT 61.404 55.000 0.84 0.00 32.00 2.43
3207 10089 0.249699 GGCCTTTTGTCCCGGTTTTG 60.250 55.000 0.00 0.00 0.00 2.44
3208 10090 0.249699 GCCTTTTGTCCCGGTTTTGG 60.250 55.000 0.00 0.00 0.00 3.28
3209 10091 1.404843 CCTTTTGTCCCGGTTTTGGA 58.595 50.000 0.00 0.00 0.00 3.53
3210 10092 1.757699 CCTTTTGTCCCGGTTTTGGAA 59.242 47.619 0.00 0.00 32.59 3.53
3211 10093 2.482316 CCTTTTGTCCCGGTTTTGGAAC 60.482 50.000 0.00 0.00 32.59 3.62
3224 10106 5.196341 GTTTTGGAACCAGGACTAAAAGG 57.804 43.478 0.00 0.00 29.96 3.11
3225 10107 4.529716 TTTGGAACCAGGACTAAAAGGT 57.470 40.909 0.00 0.00 35.47 3.50
3226 10108 3.782656 TGGAACCAGGACTAAAAGGTC 57.217 47.619 0.00 0.00 32.05 3.85
3227 10109 2.038033 TGGAACCAGGACTAAAAGGTCG 59.962 50.000 0.00 0.00 37.12 4.79
3228 10110 2.038164 GGAACCAGGACTAAAAGGTCGT 59.962 50.000 0.00 0.00 37.12 4.34
3229 10111 3.495629 GGAACCAGGACTAAAAGGTCGTT 60.496 47.826 0.00 0.00 37.12 3.85
3230 10112 4.262592 GGAACCAGGACTAAAAGGTCGTTA 60.263 45.833 0.00 0.00 37.12 3.18
3231 10113 4.263018 ACCAGGACTAAAAGGTCGTTAC 57.737 45.455 0.00 0.00 37.12 2.50
3232 10114 3.899980 ACCAGGACTAAAAGGTCGTTACT 59.100 43.478 0.00 0.00 37.12 2.24
3233 10115 5.079643 ACCAGGACTAAAAGGTCGTTACTA 58.920 41.667 0.00 0.00 37.12 1.82
3234 10116 5.539955 ACCAGGACTAAAAGGTCGTTACTAA 59.460 40.000 0.00 0.00 37.12 2.24
3235 10117 6.212187 ACCAGGACTAAAAGGTCGTTACTAAT 59.788 38.462 0.00 0.00 37.12 1.73
3236 10118 6.534079 CCAGGACTAAAAGGTCGTTACTAATG 59.466 42.308 0.00 0.00 37.12 1.90
3237 10119 6.035758 CAGGACTAAAAGGTCGTTACTAATGC 59.964 42.308 0.00 0.00 37.12 3.56
3238 10120 5.292834 GGACTAAAAGGTCGTTACTAATGCC 59.707 44.000 0.00 0.00 37.12 4.40
3239 10121 5.181009 ACTAAAAGGTCGTTACTAATGCCC 58.819 41.667 0.00 0.00 0.00 5.36
3240 10122 3.994931 AAAGGTCGTTACTAATGCCCT 57.005 42.857 0.00 0.00 0.00 5.19
3241 10123 3.994931 AAGGTCGTTACTAATGCCCTT 57.005 42.857 0.00 0.00 0.00 3.95
3242 10124 3.261981 AGGTCGTTACTAATGCCCTTG 57.738 47.619 0.00 0.00 0.00 3.61
3243 10125 2.093128 AGGTCGTTACTAATGCCCTTGG 60.093 50.000 0.00 0.00 0.00 3.61
3253 10135 4.338815 GCCCTTGGCCTTTAGTCC 57.661 61.111 3.32 0.00 44.06 3.85
3254 10136 1.379977 GCCCTTGGCCTTTAGTCCC 60.380 63.158 3.32 0.00 44.06 4.46
3255 10137 1.077716 CCCTTGGCCTTTAGTCCCG 60.078 63.158 3.32 0.00 0.00 5.14
3256 10138 1.077716 CCTTGGCCTTTAGTCCCGG 60.078 63.158 3.32 0.00 0.00 5.73
3257 10139 1.683441 CTTGGCCTTTAGTCCCGGT 59.317 57.895 3.32 0.00 0.00 5.28
3258 10140 0.037734 CTTGGCCTTTAGTCCCGGTT 59.962 55.000 3.32 0.00 0.00 4.44
3259 10141 0.037160 TTGGCCTTTAGTCCCGGTTC 59.963 55.000 3.32 0.00 0.00 3.62
3260 10142 0.838987 TGGCCTTTAGTCCCGGTTCT 60.839 55.000 3.32 0.15 0.00 3.01
3261 10143 0.327259 GGCCTTTAGTCCCGGTTCTT 59.673 55.000 0.00 0.00 0.00 2.52
3262 10144 1.556451 GGCCTTTAGTCCCGGTTCTTA 59.444 52.381 0.00 0.00 0.00 2.10
3263 10145 2.625737 GCCTTTAGTCCCGGTTCTTAC 58.374 52.381 0.00 0.00 0.00 2.34
3264 10146 2.027837 GCCTTTAGTCCCGGTTCTTACA 60.028 50.000 0.00 0.00 0.00 2.41
3265 10147 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
3266 10148 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
3267 10149 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
3268 10150 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
3269 10151 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
3274 10156 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
3275 10157 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
3276 10158 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
3277 10159 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
3278 10160 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
3279 10161 0.314935 TTACACGAACCGGGACAGAC 59.685 55.000 6.32 0.00 32.98 3.51
3280 10162 1.855213 TACACGAACCGGGACAGACG 61.855 60.000 6.32 4.55 32.98 4.18
3289 10171 4.699522 GGACAGACGGGCCACCAC 62.700 72.222 4.39 0.00 36.13 4.16
3290 10172 3.936203 GACAGACGGGCCACCACA 61.936 66.667 4.39 0.00 36.13 4.17
3291 10173 3.249189 ACAGACGGGCCACCACAT 61.249 61.111 4.39 0.00 36.13 3.21
3292 10174 2.747460 CAGACGGGCCACCACATG 60.747 66.667 4.39 0.00 36.13 3.21
3335 10217 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
3336 10218 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
3337 10219 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
3338 10220 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
3339 10221 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
3340 10222 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
3341 10223 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.620488 CCAATCCTAAGCCTAGCACAAA 58.380 45.455 0.00 0.00 0.00 2.83
4 5 2.092429 CCCAATCCTAAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
7 8 1.768870 GACCCAATCCTAAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
8 9 2.050918 AGACCCAATCCTAAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
9 10 3.456277 ACAAGACCCAATCCTAAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
11 12 2.239907 GACAAGACCCAATCCTAAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
12 13 2.644676 GACAAGACCCAATCCTAAGCC 58.355 52.381 0.00 0.00 0.00 4.35
14 15 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
15 16 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
16 17 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
18 19 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
19 20 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
21 22 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
22 23 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
23 24 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
24 25 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
26 27 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
27 28 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
29 30 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
31 32 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
40 41 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
42 43 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
43 44 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
44 45 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
45 46 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
47 48 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
48 49 7.121974 GTTGATAACGGGATCACATCATTAG 57.878 40.000 0.00 0.00 35.56 1.73
64 65 4.142708 TGCACATTGGATGTCGTTGATAAC 60.143 41.667 0.00 0.00 42.70 1.89
70 71 1.473677 CCATGCACATTGGATGTCGTT 59.526 47.619 0.00 0.00 43.51 3.85
71 72 1.097232 CCATGCACATTGGATGTCGT 58.903 50.000 0.00 0.00 43.51 4.34
72 73 1.064505 GACCATGCACATTGGATGTCG 59.935 52.381 11.80 0.00 43.51 4.35
76 77 1.285667 TCCTGACCATGCACATTGGAT 59.714 47.619 11.80 0.00 0.00 3.41
78 79 1.548081 TTCCTGACCATGCACATTGG 58.452 50.000 3.18 3.18 0.00 3.16
79 80 2.353011 GGTTTCCTGACCATGCACATTG 60.353 50.000 0.00 0.00 39.57 2.82
80 81 1.895131 GGTTTCCTGACCATGCACATT 59.105 47.619 0.00 0.00 39.57 2.71
81 82 1.549203 GGTTTCCTGACCATGCACAT 58.451 50.000 0.00 0.00 39.57 3.21
82 83 0.888736 CGGTTTCCTGACCATGCACA 60.889 55.000 0.00 0.00 39.78 4.57
83 84 0.889186 ACGGTTTCCTGACCATGCAC 60.889 55.000 0.00 0.00 39.78 4.57
84 85 0.687920 TACGGTTTCCTGACCATGCA 59.312 50.000 0.00 0.00 39.78 3.96
86 87 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
91 92 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
92 93 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
93 94 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
94 95 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
95 96 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
96 97 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
97 98 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
99 100 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
101 102 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
105 106 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
107 108 8.634444 AGTTAACTAGCTCGTTGATCAATAGAT 58.366 33.333 19.51 16.66 37.13 1.98
108 109 7.997482 AGTTAACTAGCTCGTTGATCAATAGA 58.003 34.615 19.51 16.55 0.00 1.98
109 110 9.388346 CTAGTTAACTAGCTCGTTGATCAATAG 57.612 37.037 25.64 13.07 39.43 1.73
110 111 9.117183 TCTAGTTAACTAGCTCGTTGATCAATA 57.883 33.333 30.09 11.06 44.24 1.90
111 112 7.997482 TCTAGTTAACTAGCTCGTTGATCAAT 58.003 34.615 30.09 0.00 44.24 2.57
112 113 7.387119 TCTAGTTAACTAGCTCGTTGATCAA 57.613 36.000 30.09 3.38 44.24 2.57
113 114 6.038382 CCTCTAGTTAACTAGCTCGTTGATCA 59.962 42.308 30.09 13.28 44.24 2.92
114 115 6.432107 CCTCTAGTTAACTAGCTCGTTGATC 58.568 44.000 30.09 4.38 44.24 2.92
115 116 5.221087 GCCTCTAGTTAACTAGCTCGTTGAT 60.221 44.000 30.09 2.51 44.24 2.57
116 117 4.096081 GCCTCTAGTTAACTAGCTCGTTGA 59.904 45.833 30.09 15.24 44.24 3.18
118 119 4.271661 AGCCTCTAGTTAACTAGCTCGTT 58.728 43.478 30.09 17.62 44.24 3.85
119 120 3.888583 AGCCTCTAGTTAACTAGCTCGT 58.111 45.455 30.09 16.11 44.24 4.18
120 121 4.904253 AAGCCTCTAGTTAACTAGCTCG 57.096 45.455 30.09 21.45 44.24 5.03
121 122 6.947644 AGTAAGCCTCTAGTTAACTAGCTC 57.052 41.667 30.09 21.75 44.24 4.09
122 123 6.999871 CCTAGTAAGCCTCTAGTTAACTAGCT 59.000 42.308 30.09 23.71 44.24 3.32
123 124 6.207221 CCCTAGTAAGCCTCTAGTTAACTAGC 59.793 46.154 30.09 22.17 44.24 3.42
124 125 7.445096 GTCCCTAGTAAGCCTCTAGTTAACTAG 59.555 44.444 29.36 29.36 45.57 2.57
126 127 6.128486 GTCCCTAGTAAGCCTCTAGTTAACT 58.872 44.000 13.68 13.68 34.72 2.24
127 128 5.890419 TGTCCCTAGTAAGCCTCTAGTTAAC 59.110 44.000 0.00 0.00 34.72 2.01
130 131 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
131 132 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
132 133 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
133 134 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
134 135 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
135 136 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
136 137 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
137 138 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
138 139 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
139 140 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
150 151 3.938963 GTGGGTACATAGACAACACCATG 59.061 47.826 0.00 0.00 0.00 3.66
152 153 2.973406 TGTGGGTACATAGACAACACCA 59.027 45.455 0.00 0.00 31.47 4.17
156 157 4.575885 ACATGTGTGGGTACATAGACAAC 58.424 43.478 0.00 0.00 39.17 3.32
158 159 5.897250 AGATACATGTGTGGGTACATAGACA 59.103 40.000 9.11 0.00 39.17 3.41
160 161 6.133356 TCAGATACATGTGTGGGTACATAGA 58.867 40.000 9.11 0.00 39.17 1.98
161 162 6.040955 ACTCAGATACATGTGTGGGTACATAG 59.959 42.308 9.11 0.00 39.17 2.23
162 163 5.897250 ACTCAGATACATGTGTGGGTACATA 59.103 40.000 9.11 0.00 39.17 2.29
164 165 4.093743 ACTCAGATACATGTGTGGGTACA 58.906 43.478 9.11 0.00 34.63 2.90
165 166 4.737855 ACTCAGATACATGTGTGGGTAC 57.262 45.455 9.11 0.00 0.00 3.34
166 167 5.338056 GGAAACTCAGATACATGTGTGGGTA 60.338 44.000 9.11 0.00 0.00 3.69
167 168 4.565652 GGAAACTCAGATACATGTGTGGGT 60.566 45.833 9.11 6.49 0.00 4.51
172 173 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
173 174 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
174 175 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
271 272 5.474876 GGATTGTTGGAAATATGCCCTAGAG 59.525 44.000 0.00 0.00 0.00 2.43
272 273 5.385198 GGATTGTTGGAAATATGCCCTAGA 58.615 41.667 0.00 0.00 0.00 2.43
273 274 4.524328 GGGATTGTTGGAAATATGCCCTAG 59.476 45.833 0.00 0.00 29.23 3.02
275 276 3.308401 GGGATTGTTGGAAATATGCCCT 58.692 45.455 0.00 0.00 29.23 5.19
276 277 3.037549 TGGGATTGTTGGAAATATGCCC 58.962 45.455 0.00 0.00 32.72 5.36
277 278 4.081198 TGTTGGGATTGTTGGAAATATGCC 60.081 41.667 0.00 0.00 33.76 4.40
278 279 5.083533 TGTTGGGATTGTTGGAAATATGC 57.916 39.130 0.00 0.00 0.00 3.14
282 283 9.835389 CAAATATATGTTGGGATTGTTGGAAAT 57.165 29.630 0.00 0.00 0.00 2.17
286 287 9.664332 TTTTCAAATATATGTTGGGATTGTTGG 57.336 29.630 0.00 0.00 0.00 3.77
289 290 9.874205 CACTTTTCAAATATATGTTGGGATTGT 57.126 29.630 0.00 0.00 0.00 2.71
290 291 9.316730 CCACTTTTCAAATATATGTTGGGATTG 57.683 33.333 0.00 0.00 0.00 2.67
292 293 7.418942 GCCCACTTTTCAAATATATGTTGGGAT 60.419 37.037 11.04 0.00 32.45 3.85
295 296 6.048509 GGCCCACTTTTCAAATATATGTTGG 58.951 40.000 0.00 0.00 0.00 3.77
325 2752 6.595326 TGCCTAGTTTTTCTCATACATGACAG 59.405 38.462 0.00 0.00 32.50 3.51
326 2753 6.472016 TGCCTAGTTTTTCTCATACATGACA 58.528 36.000 0.00 0.00 32.50 3.58
333 2760 5.523916 GCTCGAATGCCTAGTTTTTCTCATA 59.476 40.000 0.00 0.00 0.00 2.15
416 2843 2.835156 TCATACAAGGACATCGGGAACA 59.165 45.455 0.00 0.00 0.00 3.18
417 2844 3.132289 TCTCATACAAGGACATCGGGAAC 59.868 47.826 0.00 0.00 0.00 3.62
518 2945 1.774110 TGTCACAAACCCTTGCATGT 58.226 45.000 0.00 0.00 35.84 3.21
519 2946 2.610976 CCATGTCACAAACCCTTGCATG 60.611 50.000 0.00 0.00 35.84 4.06
521 2948 1.039068 CCATGTCACAAACCCTTGCA 58.961 50.000 0.00 0.00 35.84 4.08
522 2949 1.039856 ACCATGTCACAAACCCTTGC 58.960 50.000 0.00 0.00 35.84 4.01
523 2950 2.305928 TCACCATGTCACAAACCCTTG 58.694 47.619 0.00 0.00 38.61 3.61
526 2953 4.522789 AGTTTATCACCATGTCACAAACCC 59.477 41.667 0.00 0.00 0.00 4.11
599 3034 6.037098 GCCACGGACTAATGATGAGATATAC 58.963 44.000 0.00 0.00 0.00 1.47
607 3042 1.327460 CGTTGCCACGGACTAATGATG 59.673 52.381 1.68 0.00 43.16 3.07
623 3058 1.151777 AGTTGAGTGTCCGTGCGTTG 61.152 55.000 0.00 0.00 0.00 4.10
633 3068 9.804758 GCATTTTAGATACTACTAGTTGAGTGT 57.195 33.333 11.43 3.08 39.39 3.55
647 3082 7.493367 ACTAGACTCAGTGGCATTTTAGATAC 58.507 38.462 0.00 0.00 0.00 2.24
662 3097 8.705134 CGAGATGTGTATTAGTACTAGACTCAG 58.295 40.741 18.65 8.45 39.81 3.35
666 3101 7.656948 AGACCGAGATGTGTATTAGTACTAGAC 59.343 40.741 2.23 6.41 0.00 2.59
688 3123 3.624861 CACAGTATCCAATGCAAGAGACC 59.375 47.826 0.00 0.00 0.00 3.85
707 3142 4.649267 TCTCCATCATTTAACACCCACA 57.351 40.909 0.00 0.00 0.00 4.17
744 3179 9.439500 AGTACTAAATTACGTGGCATTTTAGAA 57.561 29.630 17.00 0.00 35.11 2.10
794 3229 9.747898 TCATTTAACACCCACTCTAAATAATGT 57.252 29.630 0.00 0.00 0.00 2.71
797 3232 9.184523 CCATCATTTAACACCCACTCTAAATAA 57.815 33.333 0.00 0.00 0.00 1.40
798 3233 8.553153 TCCATCATTTAACACCCACTCTAAATA 58.447 33.333 0.00 0.00 0.00 1.40
799 3234 7.410174 TCCATCATTTAACACCCACTCTAAAT 58.590 34.615 0.00 0.00 0.00 1.40
800 3235 6.785076 TCCATCATTTAACACCCACTCTAAA 58.215 36.000 0.00 0.00 0.00 1.85
801 3236 6.214615 TCTCCATCATTTAACACCCACTCTAA 59.785 38.462 0.00 0.00 0.00 2.10
802 3237 5.724370 TCTCCATCATTTAACACCCACTCTA 59.276 40.000 0.00 0.00 0.00 2.43
803 3238 4.536090 TCTCCATCATTTAACACCCACTCT 59.464 41.667 0.00 0.00 0.00 3.24
804 3239 4.843728 TCTCCATCATTTAACACCCACTC 58.156 43.478 0.00 0.00 0.00 3.51
805 3240 4.927267 TCTCCATCATTTAACACCCACT 57.073 40.909 0.00 0.00 0.00 4.00
810 3245 9.403110 GATTTGCATATCTCCATCATTTAACAC 57.597 33.333 9.62 0.00 0.00 3.32
1774 4695 3.660111 GCCGTGTGGGAAGTGTGC 61.660 66.667 0.00 0.00 38.47 4.57
1792 4713 0.105593 TAGTAGGCCGAGTCGACGAT 59.894 55.000 15.64 0.00 35.09 3.73
1796 4717 1.086067 CACGTAGTAGGCCGAGTCGA 61.086 60.000 15.64 0.00 41.61 4.20
1887 4808 3.625897 CACCCGCCTGACCTGTCA 61.626 66.667 0.00 0.00 38.06 3.58
1891 4812 4.021925 GAAGCACCCGCCTGACCT 62.022 66.667 0.00 0.00 39.83 3.85
1981 4902 4.371417 CCCCCACTGCTGCACCAT 62.371 66.667 0.00 0.00 0.00 3.55
2078 6464 1.797211 CGGACCCTCATAGTCGAGCC 61.797 65.000 0.00 0.00 34.97 4.70
2087 6473 1.828660 CGAGTAGGCGGACCCTCAT 60.829 63.158 0.00 0.00 44.96 2.90
2557 9273 7.899178 TCTTAACATCAGAGCGTTATTTTCA 57.101 32.000 0.00 0.00 0.00 2.69
2662 9381 0.260230 TGGCTTTCAAAGGTCCACCA 59.740 50.000 0.00 0.00 38.89 4.17
2674 9393 2.026262 TGAACCCATCCTACTGGCTTTC 60.026 50.000 0.00 0.00 34.77 2.62
2709 9428 0.806102 CAGTACCGGGAATCAGTGCG 60.806 60.000 6.32 0.00 0.00 5.34
2792 9673 3.512033 GTAGTGTGAGCTACCTTCTGG 57.488 52.381 0.00 0.00 36.30 3.86
2825 9706 9.705471 AAATTGCAAAACGATAAATGCATATTG 57.295 25.926 1.71 0.00 46.97 1.90
2880 9761 3.423645 GCTGAAAATTCGAGACGTCCAAG 60.424 47.826 13.01 3.95 0.00 3.61
2933 9814 6.349363 GGTCGAAGGAAAATTATTCAAGCAGT 60.349 38.462 0.00 0.00 0.00 4.40
2934 9815 6.030228 GGTCGAAGGAAAATTATTCAAGCAG 58.970 40.000 0.00 0.00 0.00 4.24
2997 9878 3.762407 TTAGTTAGCTGCAGTGTCCAA 57.238 42.857 16.64 0.24 0.00 3.53
3003 9884 5.799213 AGACTGAAATTAGTTAGCTGCAGT 58.201 37.500 16.64 4.79 37.99 4.40
3048 9930 2.952714 CCAACTGGCTTTCCCTCAG 58.047 57.895 0.00 0.00 34.91 3.35
3060 9942 2.297033 ACCAGCAATAAAGTGCCAACTG 59.703 45.455 0.00 0.00 46.14 3.16
3065 9947 1.810151 TCGAACCAGCAATAAAGTGCC 59.190 47.619 0.00 0.00 46.14 5.01
3099 9981 6.479331 AGTTTTCTTCTTCCTCGTGTCTTAAC 59.521 38.462 0.00 0.00 0.00 2.01
3108 9990 4.021368 TCCACCTAGTTTTCTTCTTCCTCG 60.021 45.833 0.00 0.00 0.00 4.63
3141 10023 8.202137 GCCATTTTTCTACTAGTGATACTGGTA 58.798 37.037 5.39 5.31 40.52 3.25
3149 10031 6.719370 ACAATTGGCCATTTTTCTACTAGTGA 59.281 34.615 6.09 0.00 0.00 3.41
3150 10032 6.924111 ACAATTGGCCATTTTTCTACTAGTG 58.076 36.000 6.09 0.00 0.00 2.74
3151 10033 6.152831 GGACAATTGGCCATTTTTCTACTAGT 59.847 38.462 26.25 0.00 44.76 2.57
3152 10034 6.564328 GGACAATTGGCCATTTTTCTACTAG 58.436 40.000 26.25 7.27 44.76 2.57
3153 10035 6.524101 GGACAATTGGCCATTTTTCTACTA 57.476 37.500 26.25 0.00 44.76 1.82
3154 10036 5.405935 GGACAATTGGCCATTTTTCTACT 57.594 39.130 26.25 0.00 44.76 2.57
3165 10047 2.696759 CGAACCGGGACAATTGGCC 61.697 63.158 23.25 23.25 44.61 5.36
3166 10048 0.674269 TACGAACCGGGACAATTGGC 60.674 55.000 10.83 6.56 0.00 4.52
3167 10049 1.735571 CTTACGAACCGGGACAATTGG 59.264 52.381 10.83 0.00 0.00 3.16
3168 10050 1.735571 CCTTACGAACCGGGACAATTG 59.264 52.381 6.32 3.24 0.00 2.32
3169 10051 1.339342 CCCTTACGAACCGGGACAATT 60.339 52.381 6.32 0.00 40.55 2.32
3170 10052 0.251073 CCCTTACGAACCGGGACAAT 59.749 55.000 6.32 0.00 40.55 2.71
3171 10053 1.672898 CCCTTACGAACCGGGACAA 59.327 57.895 6.32 0.00 40.55 3.18
3172 10054 2.946346 GCCCTTACGAACCGGGACA 61.946 63.158 6.32 0.00 40.55 4.02
3173 10055 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
3174 10056 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
3175 10057 2.473891 AAAGGCCCTTACGAACCGGG 62.474 60.000 6.32 0.00 41.06 5.73
3176 10058 0.607217 AAAAGGCCCTTACGAACCGG 60.607 55.000 0.00 0.00 0.00 5.28
3177 10059 0.519961 CAAAAGGCCCTTACGAACCG 59.480 55.000 0.00 0.00 0.00 4.44
3178 10060 1.538512 GACAAAAGGCCCTTACGAACC 59.461 52.381 0.00 0.00 0.00 3.62
3179 10061 1.538512 GGACAAAAGGCCCTTACGAAC 59.461 52.381 0.00 0.00 0.00 3.95
3180 10062 1.546099 GGGACAAAAGGCCCTTACGAA 60.546 52.381 0.00 0.00 41.31 3.85
3181 10063 0.037160 GGGACAAAAGGCCCTTACGA 59.963 55.000 0.00 0.00 41.31 3.43
3182 10064 1.303091 CGGGACAAAAGGCCCTTACG 61.303 60.000 4.64 0.00 42.40 3.18
3183 10065 0.963856 CCGGGACAAAAGGCCCTTAC 60.964 60.000 4.64 0.00 42.40 2.34
3184 10066 1.381076 CCGGGACAAAAGGCCCTTA 59.619 57.895 4.64 0.00 42.40 2.69
3185 10067 2.117423 CCGGGACAAAAGGCCCTT 59.883 61.111 4.64 0.00 42.40 3.95
3186 10068 2.306715 AAACCGGGACAAAAGGCCCT 62.307 55.000 6.32 0.00 42.40 5.19
3187 10069 1.404479 AAAACCGGGACAAAAGGCCC 61.404 55.000 6.32 0.00 41.11 5.80
3188 10070 0.249699 CAAAACCGGGACAAAAGGCC 60.250 55.000 6.32 0.00 0.00 5.19
3189 10071 0.249699 CCAAAACCGGGACAAAAGGC 60.250 55.000 6.32 0.00 0.00 4.35
3190 10072 1.404843 TCCAAAACCGGGACAAAAGG 58.595 50.000 6.32 0.00 0.00 3.11
3191 10073 2.482316 GGTTCCAAAACCGGGACAAAAG 60.482 50.000 6.32 0.00 45.33 2.27
3192 10074 1.481363 GGTTCCAAAACCGGGACAAAA 59.519 47.619 6.32 0.00 45.33 2.44
3193 10075 1.112950 GGTTCCAAAACCGGGACAAA 58.887 50.000 6.32 0.00 45.33 2.83
3194 10076 2.809952 GGTTCCAAAACCGGGACAA 58.190 52.632 6.32 0.00 45.33 3.18
3195 10077 4.583086 GGTTCCAAAACCGGGACA 57.417 55.556 6.32 0.00 45.33 4.02
3202 10084 4.647853 ACCTTTTAGTCCTGGTTCCAAAAC 59.352 41.667 0.00 0.00 34.46 2.43
3203 10085 4.874199 ACCTTTTAGTCCTGGTTCCAAAA 58.126 39.130 0.00 0.00 0.00 2.44
3204 10086 4.466827 GACCTTTTAGTCCTGGTTCCAAA 58.533 43.478 0.00 0.00 32.30 3.28
3205 10087 3.495453 CGACCTTTTAGTCCTGGTTCCAA 60.495 47.826 0.00 0.00 32.91 3.53
3206 10088 2.038033 CGACCTTTTAGTCCTGGTTCCA 59.962 50.000 0.00 0.00 32.91 3.53
3207 10089 2.038164 ACGACCTTTTAGTCCTGGTTCC 59.962 50.000 0.00 0.00 32.91 3.62
3208 10090 3.397849 ACGACCTTTTAGTCCTGGTTC 57.602 47.619 0.00 0.00 32.91 3.62
3209 10091 3.851458 AACGACCTTTTAGTCCTGGTT 57.149 42.857 0.00 0.00 32.91 3.67
3210 10092 3.899980 AGTAACGACCTTTTAGTCCTGGT 59.100 43.478 0.00 0.00 32.91 4.00
3211 10093 4.532314 AGTAACGACCTTTTAGTCCTGG 57.468 45.455 0.00 0.00 32.91 4.45
3212 10094 6.035758 GCATTAGTAACGACCTTTTAGTCCTG 59.964 42.308 0.00 0.00 32.91 3.86
3213 10095 6.104665 GCATTAGTAACGACCTTTTAGTCCT 58.895 40.000 0.00 0.00 32.91 3.85
3214 10096 5.292834 GGCATTAGTAACGACCTTTTAGTCC 59.707 44.000 0.00 0.00 32.91 3.85
3215 10097 5.292834 GGGCATTAGTAACGACCTTTTAGTC 59.707 44.000 0.00 0.00 0.00 2.59
3216 10098 5.046087 AGGGCATTAGTAACGACCTTTTAGT 60.046 40.000 0.00 0.00 0.00 2.24
3217 10099 5.425630 AGGGCATTAGTAACGACCTTTTAG 58.574 41.667 0.00 0.00 0.00 1.85
3218 10100 5.425196 AGGGCATTAGTAACGACCTTTTA 57.575 39.130 0.00 0.00 0.00 1.52
3219 10101 4.296621 AGGGCATTAGTAACGACCTTTT 57.703 40.909 0.00 0.00 0.00 2.27
3220 10102 3.994931 AGGGCATTAGTAACGACCTTT 57.005 42.857 0.00 0.00 0.00 3.11
3221 10103 3.606687 CAAGGGCATTAGTAACGACCTT 58.393 45.455 10.39 10.39 37.33 3.50
3222 10104 2.093128 CCAAGGGCATTAGTAACGACCT 60.093 50.000 0.00 0.00 0.00 3.85
3223 10105 2.285977 CCAAGGGCATTAGTAACGACC 58.714 52.381 0.00 0.00 0.00 4.79
3237 10119 1.077716 CGGGACTAAAGGCCAAGGG 60.078 63.158 5.01 0.00 0.00 3.95
3238 10120 1.077716 CCGGGACTAAAGGCCAAGG 60.078 63.158 5.01 2.66 0.00 3.61
3239 10121 0.037734 AACCGGGACTAAAGGCCAAG 59.962 55.000 6.32 1.14 0.00 3.61
3240 10122 0.037160 GAACCGGGACTAAAGGCCAA 59.963 55.000 6.32 0.00 0.00 4.52
3241 10123 0.838987 AGAACCGGGACTAAAGGCCA 60.839 55.000 6.32 0.00 0.00 5.36
3242 10124 0.327259 AAGAACCGGGACTAAAGGCC 59.673 55.000 6.32 0.00 0.00 5.19
3243 10125 2.027837 TGTAAGAACCGGGACTAAAGGC 60.028 50.000 6.32 0.00 0.00 4.35
3244 10126 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
3245 10127 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
3246 10128 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
3247 10129 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
3248 10130 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
3249 10131 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
3250 10132 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
3251 10133 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
3257 10139 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
3258 10140 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
3259 10141 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
3260 10142 0.314935 GTCTGTCCCGGTTCGTGTAA 59.685 55.000 0.00 0.00 0.00 2.41
3261 10143 1.855213 CGTCTGTCCCGGTTCGTGTA 61.855 60.000 0.00 0.00 0.00 2.90
3262 10144 2.732658 GTCTGTCCCGGTTCGTGT 59.267 61.111 0.00 0.00 0.00 4.49
3263 10145 2.430244 CGTCTGTCCCGGTTCGTG 60.430 66.667 0.00 0.00 0.00 4.35
3264 10146 3.677648 CCGTCTGTCCCGGTTCGT 61.678 66.667 0.00 0.00 40.59 3.85
3265 10147 4.430765 CCCGTCTGTCCCGGTTCG 62.431 72.222 0.00 0.00 43.98 3.95
3266 10148 4.754667 GCCCGTCTGTCCCGGTTC 62.755 72.222 0.00 0.00 43.98 3.62
3272 10154 4.699522 GTGGTGGCCCGTCTGTCC 62.700 72.222 0.00 0.00 0.00 4.02
3273 10155 3.254024 ATGTGGTGGCCCGTCTGTC 62.254 63.158 0.00 0.00 0.00 3.51
3274 10156 3.249189 ATGTGGTGGCCCGTCTGT 61.249 61.111 0.00 0.00 0.00 3.41
3275 10157 2.747460 CATGTGGTGGCCCGTCTG 60.747 66.667 0.00 0.00 0.00 3.51
3276 10158 4.033776 CCATGTGGTGGCCCGTCT 62.034 66.667 0.00 0.00 42.12 4.18
3318 10200 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
3319 10201 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
3320 10202 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
3321 10203 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
3322 10204 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
3323 10205 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
3324 10206 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.