Multiple sequence alignment - TraesCS6B01G407500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G407500 chr6B 100.000 5404 0 0 1 5404 681918633 681924036 0.000000e+00 9980.0
1 TraesCS6B01G407500 chr6B 94.681 94 5 0 4216 4309 681922818 681922911 4.360000e-31 147.0
2 TraesCS6B01G407500 chr6B 94.681 94 5 0 4186 4279 681922848 681922941 4.360000e-31 147.0
3 TraesCS6B01G407500 chr6B 94.505 91 5 0 3048 3138 308529202 308529292 2.030000e-29 141.0
4 TraesCS6B01G407500 chr6A 88.397 2396 172 46 702 3051 595476464 595478799 0.000000e+00 2787.0
5 TraesCS6B01G407500 chr6A 90.106 2163 135 30 3278 5404 595478868 595480987 0.000000e+00 2736.0
6 TraesCS6B01G407500 chr6A 87.550 249 22 5 4705 4947 410909883 410910128 4.120000e-71 279.0
7 TraesCS6B01G407500 chr6A 95.745 94 4 0 4216 4309 595479765 595479858 9.370000e-33 152.0
8 TraesCS6B01G407500 chr6A 93.750 64 4 0 4186 4249 595479825 595479888 4.460000e-16 97.1
9 TraesCS6B01G407500 chr6D 90.875 1578 83 29 1482 3051 449807983 449809507 0.000000e+00 2060.0
10 TraesCS6B01G407500 chr6D 90.130 1611 108 19 3135 4713 449809505 449811096 0.000000e+00 2047.0
11 TraesCS6B01G407500 chr6D 82.609 828 67 32 698 1484 449807100 449807891 0.000000e+00 660.0
12 TraesCS6B01G407500 chr6D 83.844 588 46 32 118 683 449806477 449807037 1.040000e-141 514.0
13 TraesCS6B01G407500 chr6D 90.476 336 20 6 5077 5404 449811173 449811504 2.990000e-117 433.0
14 TraesCS6B01G407500 chr6D 86.891 267 26 7 4711 4972 304278370 304278108 1.900000e-74 291.0
15 TraesCS6B01G407500 chr6D 94.681 94 5 0 4216 4309 449810552 449810645 4.360000e-31 147.0
16 TraesCS6B01G407500 chr6D 95.312 64 3 0 4246 4309 449810552 449810615 9.580000e-18 102.0
17 TraesCS6B01G407500 chr6D 86.517 89 10 2 4971 5058 449811100 449811187 4.460000e-16 97.1
18 TraesCS6B01G407500 chr5B 87.891 256 26 3 4711 4964 266013067 266012815 4.090000e-76 296.0
19 TraesCS6B01G407500 chr5B 91.262 103 4 4 3049 3151 138777620 138777523 9.440000e-28 135.0
20 TraesCS6B01G407500 chr1A 86.567 268 24 8 4711 4967 434422676 434422942 8.860000e-73 285.0
21 TraesCS6B01G407500 chr5A 86.641 262 27 4 4711 4964 289025581 289025842 3.190000e-72 283.0
22 TraesCS6B01G407500 chr5A 92.233 103 4 2 3041 3143 355734047 355734145 5.640000e-30 143.0
23 TraesCS6B01G407500 chr5A 95.455 88 3 1 3050 3137 659866877 659866963 7.300000e-29 139.0
24 TraesCS6B01G407500 chr3B 86.364 264 29 6 4705 4964 519860651 519860911 1.150000e-71 281.0
25 TraesCS6B01G407500 chr3B 86.822 258 24 6 4719 4967 394098013 394097757 4.120000e-71 279.0
26 TraesCS6B01G407500 chr2A 85.926 270 28 7 4700 4965 468290659 468290396 4.120000e-71 279.0
27 TraesCS6B01G407500 chr2A 94.444 90 3 1 3050 3139 522506949 522506862 2.630000e-28 137.0
28 TraesCS6B01G407500 chr4D 96.591 88 1 1 3050 3137 481110365 481110280 1.570000e-30 145.0
29 TraesCS6B01G407500 chr4D 92.929 99 3 3 3041 3138 28237800 28237895 2.030000e-29 141.0
30 TraesCS6B01G407500 chr4A 94.505 91 5 0 3049 3139 601204634 601204544 2.030000e-29 141.0
31 TraesCS6B01G407500 chr2D 94.624 93 2 1 3050 3142 67547507 67547596 2.030000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G407500 chr6B 681918633 681924036 5403 False 3424.666667 9980 96.4540 1 5404 3 chr6B.!!$F2 5403
1 TraesCS6B01G407500 chr6A 595476464 595480987 4523 False 1443.025000 2787 91.9995 702 5404 4 chr6A.!!$F2 4702
2 TraesCS6B01G407500 chr6D 449806477 449811504 5027 False 757.512500 2060 89.3055 118 5404 8 chr6D.!!$F1 5286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.038159 CTCTGTCCCTCCGTTCACAC 60.038 60.0 0.00 0.0 0.00 3.82 F
276 286 0.094216 CACATCTCTTCACGCTTGCG 59.906 55.0 13.70 13.7 0.00 4.85 F
805 879 0.111398 GACGCCTCGTTTGTTCGTTC 60.111 55.0 0.00 0.0 41.37 3.95 F
1293 1417 0.034756 TTTCTACAGGCGCAAGAGCA 59.965 50.0 10.83 0.0 42.27 4.26 F
2188 2425 0.110238 TTCTGCGCAAAGTGAATCGC 60.110 50.0 13.05 0.0 46.78 4.58 F
3701 3949 0.039617 GCACTAAAATGCGTGTGCCA 60.040 50.0 7.66 0.0 46.84 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1405 0.107312 AAGATCATGCTCTTGCGCCT 60.107 50.000 10.92 0.0 43.34 5.52 R
1282 1406 0.307146 GAAGATCATGCTCTTGCGCC 59.693 55.000 16.21 0.0 43.34 6.53 R
2719 2959 0.835941 TGCCTGCACAACCCAAAAAT 59.164 45.000 0.00 0.0 0.00 1.82 R
2895 3135 0.940126 GAGGCTGCATGTGTTATCGG 59.060 55.000 0.50 0.0 0.00 4.18 R
4142 4394 0.108138 GGTACTGCTGCTGGTACTGG 60.108 60.000 23.90 0.0 38.52 4.00 R
5353 5645 1.736645 TCTGCGTGTTTCTAGCGGC 60.737 57.895 0.00 0.0 37.20 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.154347 CGCCCAGCTCTGTCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
20 21 3.791586 GCCCAGCTCTGTCCCTCC 61.792 72.222 0.00 0.00 0.00 4.30
21 22 3.465403 CCCAGCTCTGTCCCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
22 23 2.681778 CCAGCTCTGTCCCTCCGT 60.682 66.667 0.00 0.00 0.00 4.69
23 24 2.286523 CCAGCTCTGTCCCTCCGTT 61.287 63.158 0.00 0.00 0.00 4.44
24 25 1.216710 CAGCTCTGTCCCTCCGTTC 59.783 63.158 0.00 0.00 0.00 3.95
25 26 1.228894 AGCTCTGTCCCTCCGTTCA 60.229 57.895 0.00 0.00 0.00 3.18
26 27 1.079750 GCTCTGTCCCTCCGTTCAC 60.080 63.158 0.00 0.00 0.00 3.18
27 28 1.816863 GCTCTGTCCCTCCGTTCACA 61.817 60.000 0.00 0.00 0.00 3.58
28 29 0.038159 CTCTGTCCCTCCGTTCACAC 60.038 60.000 0.00 0.00 0.00 3.82
29 30 1.372997 CTGTCCCTCCGTTCACACG 60.373 63.158 0.00 0.00 46.71 4.49
30 31 2.737376 GTCCCTCCGTTCACACGC 60.737 66.667 0.00 0.00 45.72 5.34
31 32 3.228017 TCCCTCCGTTCACACGCA 61.228 61.111 0.00 0.00 45.72 5.24
32 33 3.041940 CCCTCCGTTCACACGCAC 61.042 66.667 0.00 0.00 45.72 5.34
33 34 3.041940 CCTCCGTTCACACGCACC 61.042 66.667 0.00 0.00 45.72 5.01
34 35 2.029073 CTCCGTTCACACGCACCT 59.971 61.111 0.00 0.00 45.72 4.00
35 36 1.594293 CTCCGTTCACACGCACCTT 60.594 57.895 0.00 0.00 45.72 3.50
36 37 1.831389 CTCCGTTCACACGCACCTTG 61.831 60.000 0.00 0.00 45.72 3.61
37 38 2.052237 CGTTCACACGCACCTTGC 60.052 61.111 0.00 0.00 40.18 4.01
38 39 2.331451 GTTCACACGCACCTTGCC 59.669 61.111 0.00 0.00 41.12 4.52
39 40 2.186826 GTTCACACGCACCTTGCCT 61.187 57.895 0.00 0.00 41.12 4.75
40 41 1.891919 TTCACACGCACCTTGCCTC 60.892 57.895 0.00 0.00 41.12 4.70
41 42 3.357079 CACACGCACCTTGCCTCC 61.357 66.667 0.00 0.00 41.12 4.30
42 43 3.560251 ACACGCACCTTGCCTCCT 61.560 61.111 0.00 0.00 41.12 3.69
43 44 2.281761 CACGCACCTTGCCTCCTT 60.282 61.111 0.00 0.00 41.12 3.36
44 45 2.032681 ACGCACCTTGCCTCCTTC 59.967 61.111 0.00 0.00 41.12 3.46
45 46 2.348998 CGCACCTTGCCTCCTTCT 59.651 61.111 0.00 0.00 41.12 2.85
46 47 1.302832 CGCACCTTGCCTCCTTCTT 60.303 57.895 0.00 0.00 41.12 2.52
47 48 1.301677 CGCACCTTGCCTCCTTCTTC 61.302 60.000 0.00 0.00 41.12 2.87
48 49 0.962855 GCACCTTGCCTCCTTCTTCC 60.963 60.000 0.00 0.00 37.42 3.46
49 50 0.322906 CACCTTGCCTCCTTCTTCCC 60.323 60.000 0.00 0.00 0.00 3.97
50 51 0.476611 ACCTTGCCTCCTTCTTCCCT 60.477 55.000 0.00 0.00 0.00 4.20
51 52 0.254462 CCTTGCCTCCTTCTTCCCTC 59.746 60.000 0.00 0.00 0.00 4.30
52 53 0.254462 CTTGCCTCCTTCTTCCCTCC 59.746 60.000 0.00 0.00 0.00 4.30
53 54 1.208165 TTGCCTCCTTCTTCCCTCCC 61.208 60.000 0.00 0.00 0.00 4.30
54 55 1.307430 GCCTCCTTCTTCCCTCCCT 60.307 63.158 0.00 0.00 0.00 4.20
55 56 1.341913 GCCTCCTTCTTCCCTCCCTC 61.342 65.000 0.00 0.00 0.00 4.30
56 57 0.692756 CCTCCTTCTTCCCTCCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
57 58 0.692756 CTCCTTCTTCCCTCCCTCCC 60.693 65.000 0.00 0.00 0.00 4.30
58 59 1.162951 TCCTTCTTCCCTCCCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
59 60 0.692756 CCTTCTTCCCTCCCTCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
60 61 0.692756 CTTCTTCCCTCCCTCCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
61 62 2.040359 CTTCCCTCCCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
62 63 2.543637 TTCCCTCCCTCCCTCCCT 60.544 66.667 0.00 0.00 0.00 4.20
63 64 2.613576 CTTCCCTCCCTCCCTCCCTC 62.614 70.000 0.00 0.00 0.00 4.30
64 65 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
65 66 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
66 67 4.548513 CTCCCTCCCTCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
68 69 4.548513 CCCTCCCTCCCTCCCGAG 62.549 77.778 0.00 0.00 0.00 4.63
78 79 3.947841 CTCCCGAGCGAGCGAGAG 61.948 72.222 0.00 0.00 30.04 3.20
79 80 4.468689 TCCCGAGCGAGCGAGAGA 62.469 66.667 0.00 0.00 0.00 3.10
80 81 3.947841 CCCGAGCGAGCGAGAGAG 61.948 72.222 0.00 0.00 0.00 3.20
81 82 2.892914 CCGAGCGAGCGAGAGAGA 60.893 66.667 0.00 0.00 0.00 3.10
82 83 2.465299 CCGAGCGAGCGAGAGAGAA 61.465 63.158 0.00 0.00 0.00 2.87
83 84 1.011242 CGAGCGAGCGAGAGAGAAG 60.011 63.158 0.00 0.00 0.00 2.85
84 85 1.298339 GAGCGAGCGAGAGAGAAGC 60.298 63.158 0.00 0.00 0.00 3.86
85 86 2.650602 GCGAGCGAGAGAGAAGCG 60.651 66.667 0.00 0.00 35.78 4.68
86 87 3.094154 CGAGCGAGAGAGAAGCGA 58.906 61.111 0.00 0.00 35.78 4.93
87 88 1.011242 CGAGCGAGAGAGAAGCGAG 60.011 63.158 0.00 0.00 35.78 5.03
88 89 1.298339 GAGCGAGAGAGAAGCGAGC 60.298 63.158 0.00 0.00 35.78 5.03
89 90 1.987704 GAGCGAGAGAGAAGCGAGCA 61.988 60.000 0.00 0.00 35.78 4.26
90 91 1.153939 GCGAGAGAGAAGCGAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
91 92 1.139226 GCGAGAGAGAAGCGAGCAAG 61.139 60.000 0.00 0.00 0.00 4.01
92 93 1.139226 CGAGAGAGAAGCGAGCAAGC 61.139 60.000 0.00 0.00 37.41 4.01
93 94 0.108898 GAGAGAGAAGCGAGCAAGCA 60.109 55.000 6.21 0.00 40.15 3.91
94 95 0.319728 AGAGAGAAGCGAGCAAGCAA 59.680 50.000 6.21 0.00 40.15 3.91
95 96 0.720590 GAGAGAAGCGAGCAAGCAAG 59.279 55.000 6.21 0.00 40.15 4.01
96 97 0.319728 AGAGAAGCGAGCAAGCAAGA 59.680 50.000 6.21 0.00 40.15 3.02
97 98 0.720590 GAGAAGCGAGCAAGCAAGAG 59.279 55.000 6.21 0.00 40.15 2.85
98 99 0.673022 AGAAGCGAGCAAGCAAGAGG 60.673 55.000 6.21 0.00 40.15 3.69
99 100 0.671781 GAAGCGAGCAAGCAAGAGGA 60.672 55.000 6.21 0.00 40.15 3.71
100 101 0.250467 AAGCGAGCAAGCAAGAGGAA 60.250 50.000 6.21 0.00 40.15 3.36
101 102 0.952984 AGCGAGCAAGCAAGAGGAAC 60.953 55.000 6.21 0.00 40.15 3.62
102 103 1.916697 GCGAGCAAGCAAGAGGAACC 61.917 60.000 0.00 0.00 37.05 3.62
103 104 0.603707 CGAGCAAGCAAGAGGAACCA 60.604 55.000 0.00 0.00 0.00 3.67
104 105 1.609208 GAGCAAGCAAGAGGAACCAA 58.391 50.000 0.00 0.00 0.00 3.67
105 106 1.956477 GAGCAAGCAAGAGGAACCAAA 59.044 47.619 0.00 0.00 0.00 3.28
106 107 1.683385 AGCAAGCAAGAGGAACCAAAC 59.317 47.619 0.00 0.00 0.00 2.93
107 108 1.683385 GCAAGCAAGAGGAACCAAACT 59.317 47.619 0.00 0.00 0.00 2.66
108 109 2.101415 GCAAGCAAGAGGAACCAAACTT 59.899 45.455 0.00 0.00 0.00 2.66
109 110 3.709987 CAAGCAAGAGGAACCAAACTTG 58.290 45.455 15.18 15.18 41.46 3.16
111 112 2.800881 CAAGAGGAACCAAACTTGCC 57.199 50.000 0.00 0.00 34.46 4.52
112 113 2.031120 CAAGAGGAACCAAACTTGCCA 58.969 47.619 0.00 0.00 34.46 4.92
113 114 1.986882 AGAGGAACCAAACTTGCCAG 58.013 50.000 0.00 0.00 0.00 4.85
114 115 0.315251 GAGGAACCAAACTTGCCAGC 59.685 55.000 0.00 0.00 0.00 4.85
115 116 1.115326 AGGAACCAAACTTGCCAGCC 61.115 55.000 0.00 0.00 0.00 4.85
116 117 1.115326 GGAACCAAACTTGCCAGCCT 61.115 55.000 0.00 0.00 0.00 4.58
138 139 4.697756 CTCCTCCGCCCAACGCAA 62.698 66.667 0.00 0.00 41.76 4.85
153 154 4.712425 CAACGCAGGCAGGCAAGC 62.712 66.667 0.00 0.00 0.00 4.01
231 233 1.162698 TACAGTCGAGACCACTTCCG 58.837 55.000 0.00 0.00 0.00 4.30
239 241 0.252284 AGACCACTTCCGTCCATCCT 60.252 55.000 0.00 0.00 0.00 3.24
240 242 0.175989 GACCACTTCCGTCCATCCTC 59.824 60.000 0.00 0.00 0.00 3.71
241 243 0.252284 ACCACTTCCGTCCATCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
242 244 0.176680 CCACTTCCGTCCATCCTCTG 59.823 60.000 0.00 0.00 0.00 3.35
244 246 1.144936 CTTCCGTCCATCCTCTGGC 59.855 63.158 0.00 0.00 45.52 4.85
249 259 1.760875 GTCCATCCTCTGGCCGGTA 60.761 63.158 12.43 0.00 45.52 4.02
253 263 1.689233 ATCCTCTGGCCGGTAAGCA 60.689 57.895 12.43 0.00 0.00 3.91
266 276 3.941483 CCGGTAAGCAATTCACATCTCTT 59.059 43.478 0.00 0.00 0.00 2.85
276 286 0.094216 CACATCTCTTCACGCTTGCG 59.906 55.000 13.70 13.70 0.00 4.85
277 287 1.059994 CATCTCTTCACGCTTGCGC 59.940 57.895 15.21 0.00 0.00 6.09
296 306 1.499502 GCTCCGCTGCTTCAGTTTC 59.500 57.895 0.00 0.00 33.43 2.78
298 308 0.667487 CTCCGCTGCTTCAGTTTCGA 60.667 55.000 0.00 0.00 33.43 3.71
301 311 0.581529 CGCTGCTTCAGTTTCGACAA 59.418 50.000 0.00 0.00 33.43 3.18
310 320 4.893424 TCAGTTTCGACAAGGGAAAAAG 57.107 40.909 0.00 0.00 35.36 2.27
311 321 3.066203 TCAGTTTCGACAAGGGAAAAAGC 59.934 43.478 0.00 0.00 35.36 3.51
312 322 3.066760 CAGTTTCGACAAGGGAAAAAGCT 59.933 43.478 0.00 0.00 35.36 3.74
313 323 3.699538 AGTTTCGACAAGGGAAAAAGCTT 59.300 39.130 0.00 0.00 35.36 3.74
316 326 3.283751 TCGACAAGGGAAAAAGCTTTGA 58.716 40.909 13.54 0.00 0.00 2.69
330 340 0.627986 CTTTGATCCCTTCCCTGCCT 59.372 55.000 0.00 0.00 0.00 4.75
331 341 0.332632 TTTGATCCCTTCCCTGCCTG 59.667 55.000 0.00 0.00 0.00 4.85
332 342 2.194326 GATCCCTTCCCTGCCTGC 59.806 66.667 0.00 0.00 0.00 4.85
333 343 3.764160 GATCCCTTCCCTGCCTGCG 62.764 68.421 0.00 0.00 0.00 5.18
392 404 7.821846 CAGATTTCTTCTGCCTTTCTTACTAGT 59.178 37.037 0.00 0.00 45.16 2.57
398 410 7.873505 TCTTCTGCCTTTCTTACTAGTCTTTTC 59.126 37.037 0.00 0.00 0.00 2.29
401 413 8.211629 TCTGCCTTTCTTACTAGTCTTTTCTTT 58.788 33.333 0.00 0.00 0.00 2.52
402 414 8.747538 TGCCTTTCTTACTAGTCTTTTCTTTT 57.252 30.769 0.00 0.00 0.00 2.27
403 415 9.185680 TGCCTTTCTTACTAGTCTTTTCTTTTT 57.814 29.630 0.00 0.00 0.00 1.94
436 452 6.425417 TCTTGGTTTGTTTGTTTGTTTTCTCC 59.575 34.615 0.00 0.00 0.00 3.71
448 464 6.071108 TGTTTGTTTTCTCCCAACTGAATGAA 60.071 34.615 0.00 0.00 0.00 2.57
453 469 5.514274 TTCTCCCAACTGAATGAACAAAC 57.486 39.130 0.00 0.00 0.00 2.93
469 485 3.194062 ACAAACCAATTTTCGGTTGCTG 58.806 40.909 0.00 0.00 46.12 4.41
486 502 3.675563 GATCCGCCGCTCCGATCT 61.676 66.667 0.00 0.00 0.00 2.75
487 503 3.618710 GATCCGCCGCTCCGATCTC 62.619 68.421 0.00 0.00 0.00 2.75
500 516 1.424493 CGATCTCGCTGCTTCCAACC 61.424 60.000 0.00 0.00 0.00 3.77
540 556 3.774528 CCGCTCCTGCCACTGCTA 61.775 66.667 0.00 0.00 38.71 3.49
541 557 2.202851 CGCTCCTGCCACTGCTAG 60.203 66.667 0.00 0.00 38.71 3.42
542 558 2.188994 GCTCCTGCCACTGCTAGG 59.811 66.667 0.00 0.00 38.71 3.02
545 561 0.326264 CTCCTGCCACTGCTAGGTTT 59.674 55.000 0.00 0.00 37.20 3.27
547 563 1.144913 TCCTGCCACTGCTAGGTTTTT 59.855 47.619 0.00 0.00 37.20 1.94
572 588 4.779993 ACTAGGATTCTTGTTGGGGATC 57.220 45.455 0.00 0.00 0.00 3.36
638 654 3.520550 GGGATTTGTCCCCACCCT 58.479 61.111 1.91 0.00 44.18 4.34
640 656 1.214992 GGGATTTGTCCCCACCCTCT 61.215 60.000 1.91 0.00 44.18 3.69
642 658 0.256177 GATTTGTCCCCACCCTCTCC 59.744 60.000 0.00 0.00 0.00 3.71
648 668 2.041405 CCCACCCTCTCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
654 674 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
660 680 1.589399 CCCTCTCCCTCTCCCTCACT 61.589 65.000 0.00 0.00 0.00 3.41
671 691 1.068753 CCCTCACTATCAGCCGCAG 59.931 63.158 0.00 0.00 0.00 5.18
683 703 1.324134 CAGCCGCAGTTTGTTTGTTTG 59.676 47.619 0.00 0.00 0.00 2.93
686 706 2.158645 GCCGCAGTTTGTTTGTTTGTTT 59.841 40.909 0.00 0.00 0.00 2.83
688 708 3.185391 CCGCAGTTTGTTTGTTTGTTTGT 59.815 39.130 0.00 0.00 0.00 2.83
690 710 4.606414 CGCAGTTTGTTTGTTTGTTTGTTG 59.394 37.500 0.00 0.00 0.00 3.33
691 711 4.908730 GCAGTTTGTTTGTTTGTTTGTTGG 59.091 37.500 0.00 0.00 0.00 3.77
692 712 5.277538 GCAGTTTGTTTGTTTGTTTGTTGGA 60.278 36.000 0.00 0.00 0.00 3.53
693 713 6.567511 GCAGTTTGTTTGTTTGTTTGTTGGAT 60.568 34.615 0.00 0.00 0.00 3.41
694 714 7.358830 CAGTTTGTTTGTTTGTTTGTTGGATT 58.641 30.769 0.00 0.00 0.00 3.01
695 715 7.859875 CAGTTTGTTTGTTTGTTTGTTGGATTT 59.140 29.630 0.00 0.00 0.00 2.17
696 716 7.859875 AGTTTGTTTGTTTGTTTGTTGGATTTG 59.140 29.630 0.00 0.00 0.00 2.32
723 791 1.963464 TTCCACCCCGAGCCGATTAC 61.963 60.000 0.00 0.00 0.00 1.89
729 797 1.436983 CCCGAGCCGATTACTTTGCC 61.437 60.000 0.00 0.00 0.00 4.52
753 827 1.883084 CCACCGCCGATCTGTTAGC 60.883 63.158 0.00 0.00 0.00 3.09
766 840 0.248661 TGTTAGCTCGCGCTCTGATC 60.249 55.000 1.61 0.00 45.15 2.92
772 846 0.919981 CTCGCGCTCTGATCTTTGAC 59.080 55.000 5.56 0.00 0.00 3.18
780 854 4.121317 GCTCTGATCTTTGACAGATGAGG 58.879 47.826 0.00 0.00 42.15 3.86
800 874 0.872388 GATTGGACGCCTCGTTTGTT 59.128 50.000 0.00 0.00 41.37 2.83
802 876 1.492319 TTGGACGCCTCGTTTGTTCG 61.492 55.000 0.00 0.00 41.37 3.95
803 877 1.952635 GGACGCCTCGTTTGTTCGT 60.953 57.895 0.00 0.00 41.37 3.85
804 878 1.493134 GGACGCCTCGTTTGTTCGTT 61.493 55.000 0.00 0.00 41.37 3.85
805 879 0.111398 GACGCCTCGTTTGTTCGTTC 60.111 55.000 0.00 0.00 41.37 3.95
806 880 1.154908 CGCCTCGTTTGTTCGTTCG 60.155 57.895 0.00 0.00 0.00 3.95
807 881 1.814211 CGCCTCGTTTGTTCGTTCGT 61.814 55.000 0.00 0.00 0.00 3.85
808 882 0.302589 GCCTCGTTTGTTCGTTCGTT 59.697 50.000 0.00 0.00 0.00 3.85
809 883 1.655600 GCCTCGTTTGTTCGTTCGTTC 60.656 52.381 0.00 0.00 0.00 3.95
810 884 1.395080 CCTCGTTTGTTCGTTCGTTCG 60.395 52.381 0.00 0.00 0.00 3.95
813 887 2.015133 CGTTTGTTCGTTCGTTCGTTC 58.985 47.619 2.67 0.00 0.00 3.95
820 894 1.063951 CGTTCGTTCGTTCCCTCTCG 61.064 60.000 0.00 0.00 0.00 4.04
822 896 2.791396 TTCGTTCGTTCCCTCTCGCG 62.791 60.000 0.00 0.00 0.00 5.87
835 913 2.541999 CCTCTCGCGTCTCTTTCATACC 60.542 54.545 5.77 0.00 0.00 2.73
836 914 1.404391 TCTCGCGTCTCTTTCATACCC 59.596 52.381 5.77 0.00 0.00 3.69
845 923 2.295349 CTCTTTCATACCCCATGCATGC 59.705 50.000 21.69 11.82 34.35 4.06
875 953 1.378514 AGCATGGCAGTTTACCCCG 60.379 57.895 0.00 0.00 0.00 5.73
876 954 3.063743 GCATGGCAGTTTACCCCGC 62.064 63.158 0.00 0.00 0.00 6.13
877 955 2.044352 ATGGCAGTTTACCCCGCC 60.044 61.111 0.00 0.00 45.11 6.13
878 956 3.655350 ATGGCAGTTTACCCCGCCC 62.655 63.158 0.00 0.00 44.22 6.13
880 958 4.354162 GCAGTTTACCCCGCCCCA 62.354 66.667 0.00 0.00 0.00 4.96
881 959 2.045340 CAGTTTACCCCGCCCCAG 60.045 66.667 0.00 0.00 0.00 4.45
901 979 3.865745 CAGTAACTAAACTCTGCATCCGG 59.134 47.826 0.00 0.00 0.00 5.14
943 1021 4.350368 TGTTGCAGATCAGTAAGGTGAA 57.650 40.909 0.00 0.00 0.00 3.18
965 1043 3.883549 GAGGATCCCCTGGCCTGC 61.884 72.222 8.55 0.00 44.53 4.85
1114 1235 1.118356 ATCGCCATCCCTCTCTGTCC 61.118 60.000 0.00 0.00 0.00 4.02
1118 1239 1.589414 CCATCCCTCTCTGTCCCTTT 58.411 55.000 0.00 0.00 0.00 3.11
1119 1240 1.918957 CCATCCCTCTCTGTCCCTTTT 59.081 52.381 0.00 0.00 0.00 2.27
1135 1256 8.827832 TGTCCCTTTTATCATTCATCTCAAAT 57.172 30.769 0.00 0.00 0.00 2.32
1148 1269 9.850628 CATTCATCTCAAATTTTGCTTCTAGAA 57.149 29.630 4.81 4.81 0.00 2.10
1151 1272 9.850628 TCATCTCAAATTTTGCTTCTAGAATTG 57.149 29.630 5.44 6.05 0.00 2.32
1231 1355 3.254629 CACCAACCATGTGGAGAGG 57.745 57.895 9.25 6.81 41.65 3.69
1260 1384 6.568869 CAAAGGAGAAGTACATCAGAGGTAG 58.431 44.000 0.31 0.00 0.00 3.18
1279 1403 8.867097 AGAGGTAGTAACAAACTCATGTTTCTA 58.133 33.333 0.00 0.88 43.75 2.10
1283 1407 7.730364 AGTAACAAACTCATGTTTCTACAGG 57.270 36.000 0.00 0.00 43.75 4.00
1285 1409 3.498397 ACAAACTCATGTTTCTACAGGCG 59.502 43.478 0.00 0.00 43.75 5.52
1286 1410 1.726853 ACTCATGTTTCTACAGGCGC 58.273 50.000 0.00 0.00 37.77 6.53
1287 1411 1.001974 ACTCATGTTTCTACAGGCGCA 59.998 47.619 10.83 0.00 37.77 6.09
1288 1412 2.076100 CTCATGTTTCTACAGGCGCAA 58.924 47.619 10.83 0.00 37.77 4.85
1290 1414 2.076100 CATGTTTCTACAGGCGCAAGA 58.924 47.619 10.83 3.03 37.77 3.02
1291 1415 1.795768 TGTTTCTACAGGCGCAAGAG 58.204 50.000 10.83 0.00 43.02 2.85
1293 1417 0.034756 TTTCTACAGGCGCAAGAGCA 59.965 50.000 10.83 0.00 42.27 4.26
1294 1418 0.250234 TTCTACAGGCGCAAGAGCAT 59.750 50.000 10.83 0.00 42.27 3.79
1301 1425 0.307146 GGCGCAAGAGCATGATCTTC 59.693 55.000 22.89 15.87 42.27 2.87
1304 1428 2.286301 GCGCAAGAGCATGATCTTCTTC 60.286 50.000 22.89 13.62 42.27 2.87
1305 1429 3.196463 CGCAAGAGCATGATCTTCTTCT 58.804 45.455 22.89 0.00 42.27 2.85
1306 1430 3.001431 CGCAAGAGCATGATCTTCTTCTG 59.999 47.826 22.89 13.57 42.27 3.02
1307 1431 3.940221 GCAAGAGCATGATCTTCTTCTGT 59.060 43.478 22.89 0.00 37.43 3.41
1308 1432 4.034279 GCAAGAGCATGATCTTCTTCTGTC 59.966 45.833 22.89 5.90 37.43 3.51
1309 1433 5.421277 CAAGAGCATGATCTTCTTCTGTCT 58.579 41.667 22.89 0.00 37.43 3.41
1310 1434 5.266733 AGAGCATGATCTTCTTCTGTCTC 57.733 43.478 7.89 0.00 0.00 3.36
1311 1435 4.710865 AGAGCATGATCTTCTTCTGTCTCA 59.289 41.667 7.89 0.00 0.00 3.27
1313 1437 5.421277 AGCATGATCTTCTTCTGTCTCAAG 58.579 41.667 0.00 0.00 0.00 3.02
1316 1440 6.370994 GCATGATCTTCTTCTGTCTCAAGAAA 59.629 38.462 0.00 0.00 38.98 2.52
1322 1459 5.296151 TCTTCTGTCTCAAGAAACACCAT 57.704 39.130 0.00 0.00 35.79 3.55
1323 1460 5.684704 TCTTCTGTCTCAAGAAACACCATT 58.315 37.500 0.00 0.00 35.79 3.16
1324 1461 6.122277 TCTTCTGTCTCAAGAAACACCATTT 58.878 36.000 0.00 0.00 35.79 2.32
1329 1466 6.795399 TGTCTCAAGAAACACCATTTTTCTC 58.205 36.000 0.00 0.00 41.48 2.87
1344 1481 5.633830 TTTTTCTCATCATGTGCTTCCTC 57.366 39.130 0.00 0.00 0.00 3.71
1346 1483 4.564782 TTCTCATCATGTGCTTCCTCTT 57.435 40.909 0.00 0.00 0.00 2.85
1347 1484 4.134379 TCTCATCATGTGCTTCCTCTTC 57.866 45.455 0.00 0.00 0.00 2.87
1348 1485 3.773667 TCTCATCATGTGCTTCCTCTTCT 59.226 43.478 0.00 0.00 0.00 2.85
1356 1493 3.326006 TGTGCTTCCTCTTCTCAGACATT 59.674 43.478 0.00 0.00 0.00 2.71
1462 1599 2.672295 GGGCGGTATGTCCACCAA 59.328 61.111 0.00 0.00 44.04 3.67
1465 1602 1.249407 GGCGGTATGTCCACCAAAAA 58.751 50.000 0.00 0.00 38.25 1.94
1531 1762 3.181461 ACTTGCTACTATCTGGGTGATGC 60.181 47.826 0.00 0.00 36.65 3.91
1544 1775 5.189736 TCTGGGTGATGCTCAGTAACTAATT 59.810 40.000 0.00 0.00 45.80 1.40
1545 1776 6.382859 TCTGGGTGATGCTCAGTAACTAATTA 59.617 38.462 0.00 0.00 45.80 1.40
1546 1777 6.953101 TGGGTGATGCTCAGTAACTAATTAA 58.047 36.000 0.00 0.00 0.00 1.40
1553 1784 6.403878 TGCTCAGTAACTAATTAAGGTGGAC 58.596 40.000 0.00 0.00 0.00 4.02
1559 1790 4.569719 ACTAATTAAGGTGGACTGGTGG 57.430 45.455 0.00 0.00 0.00 4.61
1577 1808 6.375455 ACTGGTGGTTATGATTGATGAACTTC 59.625 38.462 0.00 0.00 0.00 3.01
1579 1810 6.599244 TGGTGGTTATGATTGATGAACTTCTC 59.401 38.462 0.00 0.00 0.00 2.87
1584 1815 9.727627 GGTTATGATTGATGAACTTCTCATTTC 57.272 33.333 0.00 0.00 45.23 2.17
1615 1846 0.532862 ACCAGGTTGCACTGAAGACG 60.533 55.000 5.92 0.00 40.97 4.18
1673 1904 1.923204 CTTCTTTCCGTGATGAGCTCG 59.077 52.381 9.64 0.00 0.00 5.03
1732 1963 6.825721 ACATGTCCTATTTCAAAGATGACTCC 59.174 38.462 0.00 0.00 34.61 3.85
1764 1995 0.172803 ACTAGTTGCCGCTAACCTCG 59.827 55.000 0.00 0.00 0.00 4.63
1808 2041 6.027749 TCTGAACTTTCTCTTTCGCAAAAAC 58.972 36.000 0.00 0.00 0.00 2.43
1827 2064 7.255277 GCAAAAACTAGAACTTTCTCCTGACAT 60.255 37.037 0.00 0.00 38.70 3.06
1828 2065 7.736447 AAAACTAGAACTTTCTCCTGACATG 57.264 36.000 0.00 0.00 38.70 3.21
1829 2066 6.426646 AACTAGAACTTTCTCCTGACATGT 57.573 37.500 0.00 0.00 38.70 3.21
1830 2067 6.031751 ACTAGAACTTTCTCCTGACATGTC 57.968 41.667 19.27 19.27 38.70 3.06
1876 2113 4.512944 CACTCTGCTTGGATACGCAATTAT 59.487 41.667 0.00 0.00 42.51 1.28
1927 2164 5.185454 TCTTTCCGTGTGCTGAATTATGAT 58.815 37.500 0.00 0.00 0.00 2.45
2012 2249 4.895297 ACAAATATTGGCTTGGTCCATAGG 59.105 41.667 0.00 0.00 35.77 2.57
2023 2260 1.133792 GGTCCATAGGGTGTCAATGGG 60.134 57.143 0.00 0.00 40.53 4.00
2025 2262 2.025321 GTCCATAGGGTGTCAATGGGTT 60.025 50.000 0.00 0.00 40.53 4.11
2038 2275 5.880332 TGTCAATGGGTTACTTTAGCATCTC 59.120 40.000 0.00 0.00 0.00 2.75
2046 2283 6.374333 GGGTTACTTTAGCATCTCATTTGTGA 59.626 38.462 0.00 0.00 0.00 3.58
2047 2284 7.067494 GGGTTACTTTAGCATCTCATTTGTGAT 59.933 37.037 0.00 0.00 0.00 3.06
2048 2285 9.109393 GGTTACTTTAGCATCTCATTTGTGATA 57.891 33.333 0.00 0.00 0.00 2.15
2163 2400 3.504906 AGTTGTCAGGTGATTCATTGCTG 59.495 43.478 0.00 0.00 0.00 4.41
2165 2402 3.076621 TGTCAGGTGATTCATTGCTGTC 58.923 45.455 0.00 0.00 0.00 3.51
2188 2425 0.110238 TTCTGCGCAAAGTGAATCGC 60.110 50.000 13.05 0.00 46.78 4.58
2206 2443 4.916983 TCGCATCCAATATTTTTGAGGG 57.083 40.909 0.00 0.00 0.00 4.30
2208 2445 3.732212 GCATCCAATATTTTTGAGGGGC 58.268 45.455 0.00 0.00 0.00 5.80
2213 2450 3.710677 CCAATATTTTTGAGGGGCCATGA 59.289 43.478 4.39 0.00 0.00 3.07
2335 2575 7.667219 AGGATTCAGAACATTTATGAACAGTGT 59.333 33.333 0.00 0.00 35.89 3.55
2461 2701 6.919775 ACTCAATCTAGTTGACAAGGTACT 57.080 37.500 0.00 0.00 41.79 2.73
2479 2719 4.335594 GGTACTGGCCACTAGCTTATTTTG 59.664 45.833 0.00 0.00 43.05 2.44
2483 2723 5.648092 ACTGGCCACTAGCTTATTTTGTAAG 59.352 40.000 0.00 0.00 43.05 2.34
2484 2724 5.811190 TGGCCACTAGCTTATTTTGTAAGA 58.189 37.500 0.00 0.00 43.05 2.10
2485 2725 6.423182 TGGCCACTAGCTTATTTTGTAAGAT 58.577 36.000 0.00 0.00 43.05 2.40
2486 2726 6.889722 TGGCCACTAGCTTATTTTGTAAGATT 59.110 34.615 0.00 0.00 43.05 2.40
2487 2727 7.148086 TGGCCACTAGCTTATTTTGTAAGATTG 60.148 37.037 0.00 0.00 43.05 2.67
2526 2766 9.357652 CTTCATTTGTTTATCTTACACCATTGG 57.642 33.333 0.00 0.00 0.00 3.16
2536 2776 2.592102 ACACCATTGGCATCTTCTGT 57.408 45.000 1.54 0.00 0.00 3.41
2584 2824 1.289380 CGACGCTATTAGGGCCCTC 59.711 63.158 32.80 13.29 0.00 4.30
2697 2937 3.569277 CACAACACCTGAAATGATGTCCA 59.431 43.478 0.00 0.00 31.39 4.02
2707 2947 6.825213 CCTGAAATGATGTCCATGTTTCTCTA 59.175 38.462 12.30 0.00 35.24 2.43
2719 2959 8.350722 GTCCATGTTTCTCTATACTTATCGTCA 58.649 37.037 0.00 0.00 0.00 4.35
2813 3053 5.006165 GGATGAGAAGCTGTTAACAATCGAG 59.994 44.000 10.03 0.00 0.00 4.04
2821 3061 4.153475 GCTGTTAACAATCGAGCAGGTTTA 59.847 41.667 10.03 0.00 0.00 2.01
2895 3135 6.148811 TGTTTGTAAACTTGCTGATAGCCTAC 59.851 38.462 8.74 0.00 38.95 3.18
2916 3156 1.473965 CGATAACACATGCAGCCTCCT 60.474 52.381 0.00 0.00 0.00 3.69
3051 3293 8.414778 AGTTCAGCTAGTATCCTTGTATTGTAC 58.585 37.037 0.00 0.00 0.00 2.90
3052 3294 8.414778 GTTCAGCTAGTATCCTTGTATTGTACT 58.585 37.037 0.00 0.00 0.00 2.73
3053 3295 8.167605 TCAGCTAGTATCCTTGTATTGTACTC 57.832 38.462 0.00 0.00 0.00 2.59
3054 3296 7.230913 TCAGCTAGTATCCTTGTATTGTACTCC 59.769 40.741 0.00 0.00 0.00 3.85
3055 3297 6.494146 AGCTAGTATCCTTGTATTGTACTCCC 59.506 42.308 0.00 0.00 0.00 4.30
3056 3298 6.494146 GCTAGTATCCTTGTATTGTACTCCCT 59.506 42.308 0.00 0.00 0.00 4.20
3057 3299 6.980416 AGTATCCTTGTATTGTACTCCCTC 57.020 41.667 0.00 0.00 0.00 4.30
3058 3300 5.839606 AGTATCCTTGTATTGTACTCCCTCC 59.160 44.000 0.00 0.00 0.00 4.30
3059 3301 3.028850 TCCTTGTATTGTACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
3061 3303 3.181478 CCTTGTATTGTACTCCCTCCGTC 60.181 52.174 0.00 0.00 0.00 4.79
3062 3304 2.381911 TGTATTGTACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
3063 3305 1.685517 GTATTGTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
3065 3307 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3067 3309 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3068 3310 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3070 3312 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3071 3313 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3073 3315 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3074 3316 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3075 3317 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3076 3318 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3077 3319 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3079 3321 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3080 3322 4.154195 CCGTCCCAAAATAAGTGACTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3081 3323 4.755123 CGTCCCAAAATAAGTGACTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
3084 3326 6.918022 GTCCCAAAATAAGTGACTCAAGTTTG 59.082 38.462 11.50 11.50 0.00 2.93
3085 3327 6.605594 TCCCAAAATAAGTGACTCAAGTTTGT 59.394 34.615 15.07 0.00 0.00 2.83
3087 3329 7.860872 CCCAAAATAAGTGACTCAAGTTTGTAC 59.139 37.037 15.07 0.00 0.00 2.90
3088 3330 8.621286 CCAAAATAAGTGACTCAAGTTTGTACT 58.379 33.333 15.07 0.00 35.68 2.73
3091 3333 8.535690 AATAAGTGACTCAAGTTTGTACTAGC 57.464 34.615 0.00 0.00 33.17 3.42
3092 3334 5.793030 AGTGACTCAAGTTTGTACTAGCT 57.207 39.130 0.00 0.00 33.17 3.32
3093 3335 6.163135 AGTGACTCAAGTTTGTACTAGCTT 57.837 37.500 0.00 0.82 33.17 3.74
3094 3336 6.583562 AGTGACTCAAGTTTGTACTAGCTTT 58.416 36.000 3.82 0.00 33.17 3.51
3095 3337 6.480320 AGTGACTCAAGTTTGTACTAGCTTTG 59.520 38.462 3.82 3.70 33.17 2.77
3096 3338 6.258068 GTGACTCAAGTTTGTACTAGCTTTGT 59.742 38.462 3.82 6.40 33.17 2.83
3097 3339 7.437267 GTGACTCAAGTTTGTACTAGCTTTGTA 59.563 37.037 3.82 0.00 33.17 2.41
3098 3340 7.652105 TGACTCAAGTTTGTACTAGCTTTGTAG 59.348 37.037 3.82 5.33 33.17 2.74
3099 3341 7.498443 ACTCAAGTTTGTACTAGCTTTGTAGT 58.502 34.615 3.82 5.84 37.09 2.73
3100 3342 8.636213 ACTCAAGTTTGTACTAGCTTTGTAGTA 58.364 33.333 3.82 0.00 34.91 1.82
3110 3352 7.948278 ACTAGCTTTGTAGTACAAACTTGAG 57.052 36.000 26.25 21.44 42.55 3.02
3111 3353 7.498443 ACTAGCTTTGTAGTACAAACTTGAGT 58.502 34.615 26.25 21.80 42.55 3.41
3112 3354 6.846325 AGCTTTGTAGTACAAACTTGAGTC 57.154 37.500 21.79 9.90 42.55 3.36
3113 3355 6.346096 AGCTTTGTAGTACAAACTTGAGTCA 58.654 36.000 21.79 1.84 42.55 3.41
3114 3356 6.258068 AGCTTTGTAGTACAAACTTGAGTCAC 59.742 38.462 21.79 2.99 42.55 3.67
3115 3357 6.258068 GCTTTGTAGTACAAACTTGAGTCACT 59.742 38.462 21.79 0.00 42.55 3.41
3116 3358 7.201617 GCTTTGTAGTACAAACTTGAGTCACTT 60.202 37.037 21.79 0.00 42.55 3.16
3117 3359 9.309516 CTTTGTAGTACAAACTTGAGTCACTTA 57.690 33.333 21.79 0.11 42.55 2.24
3118 3360 9.826574 TTTGTAGTACAAACTTGAGTCACTTAT 57.173 29.630 21.79 0.00 42.55 1.73
3119 3361 9.826574 TTGTAGTACAAACTTGAGTCACTTATT 57.173 29.630 13.36 0.00 34.76 1.40
3120 3362 9.826574 TGTAGTACAAACTTGAGTCACTTATTT 57.173 29.630 0.00 0.00 37.15 1.40
3123 3365 8.621286 AGTACAAACTTGAGTCACTTATTTTGG 58.379 33.333 9.57 0.00 29.00 3.28
3124 3366 6.805713 ACAAACTTGAGTCACTTATTTTGGG 58.194 36.000 9.57 0.00 0.00 4.12
3125 3367 6.605594 ACAAACTTGAGTCACTTATTTTGGGA 59.394 34.615 9.57 0.00 0.00 4.37
3126 3368 6.635030 AACTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
3127 3369 4.755123 ACTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3128 3370 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3129 3371 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3130 3372 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3131 3373 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3132 3374 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3133 3375 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3134 3376 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3135 3377 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3136 3378 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3146 3388 5.720520 GGGACGGAGGGAGTATAATTCTTAT 59.279 44.000 0.00 0.00 0.00 1.73
3180 3422 8.429641 TGATGGAAGACTAAAGTAAGAAACAGT 58.570 33.333 0.00 0.00 0.00 3.55
3181 3423 9.274206 GATGGAAGACTAAAGTAAGAAACAGTT 57.726 33.333 0.00 0.00 0.00 3.16
3192 3434 6.687604 AGTAAGAAACAGTTGTTGCAAAACT 58.312 32.000 16.38 16.38 38.44 2.66
3201 3443 3.163630 TGTTGCAAAACTGAGCTTTCC 57.836 42.857 0.00 0.00 0.00 3.13
3219 3461 5.048083 GCTTTCCATTGTTCAGTTGACCATA 60.048 40.000 0.00 0.00 0.00 2.74
3222 3464 5.814481 TCCATTGTTCAGTTGACCATATGA 58.186 37.500 3.65 0.00 0.00 2.15
3278 3521 6.971726 TCGTCCTTGCTAATATTTCTAGGA 57.028 37.500 12.87 12.87 31.21 2.94
3360 3603 0.478072 AAGCATCAACTCCACCACCA 59.522 50.000 0.00 0.00 0.00 4.17
3477 3720 4.623932 TTTCCATGTCACTAGAGCAACT 57.376 40.909 0.00 0.00 0.00 3.16
3478 3721 3.599730 TCCATGTCACTAGAGCAACTG 57.400 47.619 0.00 0.00 0.00 3.16
3578 3821 2.599082 CACGTCCGAGCTAGATCAAAAC 59.401 50.000 8.99 1.88 0.00 2.43
3632 3877 7.000472 CAGGTACATACATCTTCCAAATGGAT 59.000 38.462 2.38 0.00 44.98 3.41
3693 3941 6.393171 AGAAGAAAATCAGGCACTAAAATGC 58.607 36.000 0.00 0.00 45.34 3.56
3701 3949 0.039617 GCACTAAAATGCGTGTGCCA 60.040 50.000 7.66 0.00 46.84 4.92
3708 3956 1.246649 AATGCGTGTGCCAATTCTCA 58.753 45.000 0.00 0.00 41.78 3.27
3712 3960 0.798776 CGTGTGCCAATTCTCACCTC 59.201 55.000 4.65 0.00 32.51 3.85
3743 3991 0.962356 AATGCGCCTAAAGCTGCTGT 60.962 50.000 4.18 0.00 40.29 4.40
3745 3993 0.321210 TGCGCCTAAAGCTGCTGTTA 60.321 50.000 4.18 3.73 40.29 2.41
3828 4076 7.702348 AGTGAAAATGTTGCTACTTCAAGAAAC 59.298 33.333 0.00 0.00 35.81 2.78
3855 4103 7.039313 GGTGAATACCTGAAACACTTTCTTT 57.961 36.000 0.00 0.00 43.97 2.52
3856 4104 8.161699 GGTGAATACCTGAAACACTTTCTTTA 57.838 34.615 0.00 0.00 43.97 1.85
3857 4105 8.074370 GGTGAATACCTGAAACACTTTCTTTAC 58.926 37.037 0.00 0.00 43.97 2.01
3858 4106 8.074370 GTGAATACCTGAAACACTTTCTTTACC 58.926 37.037 0.00 0.00 40.32 2.85
3860 4108 7.745620 ATACCTGAAACACTTTCTTTACCTG 57.254 36.000 0.00 0.00 40.32 4.00
3861 4109 5.751586 ACCTGAAACACTTTCTTTACCTGA 58.248 37.500 0.00 0.00 40.32 3.86
3862 4110 6.365520 ACCTGAAACACTTTCTTTACCTGAT 58.634 36.000 0.00 0.00 40.32 2.90
3863 4111 6.263168 ACCTGAAACACTTTCTTTACCTGATG 59.737 38.462 0.00 0.00 40.32 3.07
3864 4112 6.486657 CCTGAAACACTTTCTTTACCTGATGA 59.513 38.462 0.00 0.00 40.32 2.92
3874 4126 7.797038 TTCTTTACCTGATGATGATCATGTG 57.203 36.000 14.30 5.09 37.20 3.21
3882 4134 6.238402 CCTGATGATGATCATGTGTCTGAAAC 60.238 42.308 14.30 0.00 37.20 2.78
3897 4149 6.253512 GTGTCTGAAACCAAACTGACATTTTC 59.746 38.462 0.00 0.00 43.04 2.29
3902 4154 1.665735 CCAAACTGACATTTTCCCGCG 60.666 52.381 0.00 0.00 0.00 6.46
4025 4277 4.161295 CCGGCTTCATCGGCTCCA 62.161 66.667 0.00 0.00 41.07 3.86
4145 4397 2.746671 CTCCAGCAGCAGCACCAG 60.747 66.667 3.17 0.00 45.49 4.00
4146 4398 3.548306 CTCCAGCAGCAGCACCAGT 62.548 63.158 3.17 0.00 45.49 4.00
4147 4399 2.176314 CTCCAGCAGCAGCACCAGTA 62.176 60.000 3.17 0.00 45.49 2.74
4148 4400 2.037136 CCAGCAGCAGCACCAGTAC 61.037 63.158 3.17 0.00 45.49 2.73
4149 4401 2.037136 CAGCAGCAGCACCAGTACC 61.037 63.158 3.17 0.00 45.49 3.34
4411 4678 2.335752 CGGCATGATGTAGAGATGCTC 58.664 52.381 0.00 0.00 41.85 4.26
4429 4696 3.056465 TGCTCGTGGTGGTTTTTCTTTTT 60.056 39.130 0.00 0.00 0.00 1.94
4444 4711 1.139734 TTTTTGCTTCGCCGTTGCA 59.860 47.368 3.10 3.10 37.32 4.08
4482 4749 4.101856 AGTAGGCACCTGGTGTATAGTTT 58.898 43.478 26.48 8.43 35.75 2.66
4494 4761 9.698309 CCTGGTGTATAGTTTAGATGAGTAATG 57.302 37.037 0.00 0.00 0.00 1.90
4674 4950 5.296748 ACAGAGCAACTTTTCTCTCTCTTC 58.703 41.667 0.00 0.00 37.56 2.87
4766 5042 7.203255 AGATTTTTAGGAAAGTCAAACCTCG 57.797 36.000 0.00 0.00 34.85 4.63
4956 5239 2.865079 TGCCCTACATTTTGAAACGGA 58.135 42.857 0.00 0.00 0.00 4.69
4989 5272 4.556697 AGTTTTTCCTTTTGAGATGGGGT 58.443 39.130 0.00 0.00 0.00 4.95
5026 5310 5.181811 TGAACTGAAACTATGCATCAACAGG 59.818 40.000 0.19 0.00 0.00 4.00
5070 5354 5.168569 CAAGATGCATTTTGCTCAGATGTT 58.831 37.500 16.12 0.00 45.31 2.71
5074 5358 5.300969 TGCATTTTGCTCAGATGTTAGTC 57.699 39.130 0.75 0.00 45.31 2.59
5081 5365 3.433274 TGCTCAGATGTTAGTCAAAAGCG 59.567 43.478 0.00 0.00 0.00 4.68
5245 5537 4.617995 GCTAGCAGGCAGATATCTGTACAG 60.618 50.000 28.92 17.17 45.45 2.74
5350 5642 8.324191 AGTTGATGATCCCTATTTCTAGTGAA 57.676 34.615 0.00 0.00 0.00 3.18
5353 5645 7.730084 TGATGATCCCTATTTCTAGTGAAGTG 58.270 38.462 0.00 0.00 33.28 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.154347 GAGGGACAGAGCTGGGCG 62.154 72.222 0.00 0.00 34.19 6.13
3 4 3.791586 GGAGGGACAGAGCTGGGC 61.792 72.222 0.00 0.00 34.19 5.36
4 5 3.465403 CGGAGGGACAGAGCTGGG 61.465 72.222 0.00 0.00 34.19 4.45
5 6 2.232298 GAACGGAGGGACAGAGCTGG 62.232 65.000 0.00 0.00 34.19 4.85
6 7 1.216710 GAACGGAGGGACAGAGCTG 59.783 63.158 0.00 0.00 0.00 4.24
7 8 1.228894 TGAACGGAGGGACAGAGCT 60.229 57.895 0.00 0.00 0.00 4.09
8 9 1.079750 GTGAACGGAGGGACAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
9 10 0.038159 GTGTGAACGGAGGGACAGAG 60.038 60.000 0.00 0.00 0.00 3.35
10 11 1.802337 CGTGTGAACGGAGGGACAGA 61.802 60.000 0.00 0.00 0.00 3.41
11 12 1.372997 CGTGTGAACGGAGGGACAG 60.373 63.158 0.00 0.00 0.00 3.51
12 13 2.732016 CGTGTGAACGGAGGGACA 59.268 61.111 0.00 0.00 0.00 4.02
13 14 2.737376 GCGTGTGAACGGAGGGAC 60.737 66.667 0.00 0.00 0.00 4.46
14 15 3.228017 TGCGTGTGAACGGAGGGA 61.228 61.111 0.00 0.00 0.00 4.20
15 16 3.041940 GTGCGTGTGAACGGAGGG 61.042 66.667 0.00 0.00 33.37 4.30
16 17 2.989055 AAGGTGCGTGTGAACGGAGG 62.989 60.000 0.00 0.00 33.37 4.30
17 18 1.594293 AAGGTGCGTGTGAACGGAG 60.594 57.895 0.00 0.00 33.37 4.63
18 19 1.885388 CAAGGTGCGTGTGAACGGA 60.885 57.895 0.00 0.00 0.00 4.69
19 20 2.631428 CAAGGTGCGTGTGAACGG 59.369 61.111 0.00 0.00 0.00 4.44
20 21 2.052237 GCAAGGTGCGTGTGAACG 60.052 61.111 0.00 0.00 31.71 3.95
21 22 2.117941 GAGGCAAGGTGCGTGTGAAC 62.118 60.000 0.00 0.00 46.21 3.18
22 23 1.891919 GAGGCAAGGTGCGTGTGAA 60.892 57.895 0.00 0.00 46.21 3.18
23 24 2.280797 GAGGCAAGGTGCGTGTGA 60.281 61.111 0.00 0.00 46.21 3.58
24 25 3.357079 GGAGGCAAGGTGCGTGTG 61.357 66.667 0.00 0.00 46.21 3.82
25 26 3.120086 AAGGAGGCAAGGTGCGTGT 62.120 57.895 0.00 0.00 46.21 4.49
26 27 2.281761 AAGGAGGCAAGGTGCGTG 60.282 61.111 0.00 0.00 46.21 5.34
27 28 2.032681 GAAGGAGGCAAGGTGCGT 59.967 61.111 0.00 0.00 46.21 5.24
28 29 1.301677 GAAGAAGGAGGCAAGGTGCG 61.302 60.000 0.00 0.00 46.21 5.34
29 30 0.962855 GGAAGAAGGAGGCAAGGTGC 60.963 60.000 0.00 0.00 44.08 5.01
30 31 0.322906 GGGAAGAAGGAGGCAAGGTG 60.323 60.000 0.00 0.00 0.00 4.00
31 32 0.476611 AGGGAAGAAGGAGGCAAGGT 60.477 55.000 0.00 0.00 0.00 3.50
32 33 0.254462 GAGGGAAGAAGGAGGCAAGG 59.746 60.000 0.00 0.00 0.00 3.61
33 34 0.254462 GGAGGGAAGAAGGAGGCAAG 59.746 60.000 0.00 0.00 0.00 4.01
34 35 1.208165 GGGAGGGAAGAAGGAGGCAA 61.208 60.000 0.00 0.00 0.00 4.52
35 36 1.616628 GGGAGGGAAGAAGGAGGCA 60.617 63.158 0.00 0.00 0.00 4.75
36 37 1.307430 AGGGAGGGAAGAAGGAGGC 60.307 63.158 0.00 0.00 0.00 4.70
37 38 0.692756 GGAGGGAGGGAAGAAGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
38 39 0.692756 GGGAGGGAGGGAAGAAGGAG 60.693 65.000 0.00 0.00 0.00 3.69
39 40 1.162951 AGGGAGGGAGGGAAGAAGGA 61.163 60.000 0.00 0.00 0.00 3.36
40 41 0.692756 GAGGGAGGGAGGGAAGAAGG 60.693 65.000 0.00 0.00 0.00 3.46
41 42 0.692756 GGAGGGAGGGAGGGAAGAAG 60.693 65.000 0.00 0.00 0.00 2.85
42 43 1.396594 GGAGGGAGGGAGGGAAGAA 59.603 63.158 0.00 0.00 0.00 2.52
43 44 2.647949 GGGAGGGAGGGAGGGAAGA 61.648 68.421 0.00 0.00 0.00 2.87
44 45 2.040359 GGGAGGGAGGGAGGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
45 46 2.543637 AGGGAGGGAGGGAGGGAA 60.544 66.667 0.00 0.00 0.00 3.97
46 47 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
47 48 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
48 49 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
49 50 4.548513 CGGGAGGGAGGGAGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
51 52 4.548513 CTCGGGAGGGAGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
62 63 4.468689 TCTCTCGCTCGCTCGGGA 62.469 66.667 0.00 0.00 36.49 5.14
63 64 3.947841 CTCTCTCGCTCGCTCGGG 61.948 72.222 0.00 0.00 0.00 5.14
64 65 2.373524 CTTCTCTCTCGCTCGCTCGG 62.374 65.000 0.00 0.00 0.00 4.63
65 66 1.011242 CTTCTCTCTCGCTCGCTCG 60.011 63.158 0.00 0.00 0.00 5.03
66 67 1.298339 GCTTCTCTCTCGCTCGCTC 60.298 63.158 0.00 0.00 0.00 5.03
67 68 2.798009 GCTTCTCTCTCGCTCGCT 59.202 61.111 0.00 0.00 0.00 4.93
68 69 2.650602 CGCTTCTCTCTCGCTCGC 60.651 66.667 0.00 0.00 0.00 5.03
69 70 1.011242 CTCGCTTCTCTCTCGCTCG 60.011 63.158 0.00 0.00 0.00 5.03
70 71 1.298339 GCTCGCTTCTCTCTCGCTC 60.298 63.158 0.00 0.00 0.00 5.03
71 72 1.590610 TTGCTCGCTTCTCTCTCGCT 61.591 55.000 0.00 0.00 0.00 4.93
72 73 1.139226 CTTGCTCGCTTCTCTCTCGC 61.139 60.000 0.00 0.00 0.00 5.03
73 74 1.139226 GCTTGCTCGCTTCTCTCTCG 61.139 60.000 0.00 0.00 0.00 4.04
74 75 0.108898 TGCTTGCTCGCTTCTCTCTC 60.109 55.000 0.00 0.00 0.00 3.20
75 76 0.319728 TTGCTTGCTCGCTTCTCTCT 59.680 50.000 0.00 0.00 0.00 3.10
76 77 0.720590 CTTGCTTGCTCGCTTCTCTC 59.279 55.000 0.00 0.00 0.00 3.20
77 78 0.319728 TCTTGCTTGCTCGCTTCTCT 59.680 50.000 0.00 0.00 0.00 3.10
78 79 0.720590 CTCTTGCTTGCTCGCTTCTC 59.279 55.000 0.00 0.00 0.00 2.87
79 80 0.673022 CCTCTTGCTTGCTCGCTTCT 60.673 55.000 0.00 0.00 0.00 2.85
80 81 0.671781 TCCTCTTGCTTGCTCGCTTC 60.672 55.000 0.00 0.00 0.00 3.86
81 82 0.250467 TTCCTCTTGCTTGCTCGCTT 60.250 50.000 0.00 0.00 0.00 4.68
82 83 0.952984 GTTCCTCTTGCTTGCTCGCT 60.953 55.000 0.00 0.00 0.00 4.93
83 84 1.499502 GTTCCTCTTGCTTGCTCGC 59.500 57.895 0.00 0.00 0.00 5.03
84 85 0.603707 TGGTTCCTCTTGCTTGCTCG 60.604 55.000 0.00 0.00 0.00 5.03
85 86 1.609208 TTGGTTCCTCTTGCTTGCTC 58.391 50.000 0.00 0.00 0.00 4.26
86 87 1.683385 GTTTGGTTCCTCTTGCTTGCT 59.317 47.619 0.00 0.00 0.00 3.91
87 88 1.683385 AGTTTGGTTCCTCTTGCTTGC 59.317 47.619 0.00 0.00 0.00 4.01
88 89 3.709987 CAAGTTTGGTTCCTCTTGCTTG 58.290 45.455 0.00 0.00 32.54 4.01
92 93 2.031120 TGGCAAGTTTGGTTCCTCTTG 58.969 47.619 13.02 13.02 39.83 3.02
93 94 2.310538 CTGGCAAGTTTGGTTCCTCTT 58.689 47.619 0.00 0.00 0.00 2.85
94 95 1.986882 CTGGCAAGTTTGGTTCCTCT 58.013 50.000 0.00 0.00 0.00 3.69
95 96 0.315251 GCTGGCAAGTTTGGTTCCTC 59.685 55.000 0.00 0.00 0.00 3.71
96 97 1.115326 GGCTGGCAAGTTTGGTTCCT 61.115 55.000 0.00 0.00 0.00 3.36
97 98 1.115326 AGGCTGGCAAGTTTGGTTCC 61.115 55.000 3.38 0.00 0.00 3.62
98 99 0.315251 GAGGCTGGCAAGTTTGGTTC 59.685 55.000 3.38 0.00 0.00 3.62
99 100 1.115326 GGAGGCTGGCAAGTTTGGTT 61.115 55.000 3.38 0.00 0.00 3.67
100 101 1.531602 GGAGGCTGGCAAGTTTGGT 60.532 57.895 3.38 0.00 0.00 3.67
101 102 1.530013 CTGGAGGCTGGCAAGTTTGG 61.530 60.000 3.38 0.00 0.00 3.28
102 103 1.962144 CTGGAGGCTGGCAAGTTTG 59.038 57.895 3.38 0.00 0.00 2.93
103 104 1.905354 GCTGGAGGCTGGCAAGTTT 60.905 57.895 3.38 0.00 38.06 2.66
104 105 2.282745 GCTGGAGGCTGGCAAGTT 60.283 61.111 3.38 0.00 38.06 2.66
171 172 1.902432 GAGGATACGGGAGGACGGG 60.902 68.421 0.00 0.00 46.39 5.28
208 210 4.319622 CGGAAGTGGTCTCGACTGTATATC 60.320 50.000 0.00 0.00 0.00 1.63
209 211 3.564644 CGGAAGTGGTCTCGACTGTATAT 59.435 47.826 0.00 0.00 0.00 0.86
210 212 2.941064 CGGAAGTGGTCTCGACTGTATA 59.059 50.000 0.00 0.00 0.00 1.47
211 213 1.743958 CGGAAGTGGTCTCGACTGTAT 59.256 52.381 0.00 0.00 0.00 2.29
212 214 1.162698 CGGAAGTGGTCTCGACTGTA 58.837 55.000 0.00 0.00 0.00 2.74
239 241 0.326595 TGAATTGCTTACCGGCCAGA 59.673 50.000 0.00 0.00 0.00 3.86
240 242 0.451783 GTGAATTGCTTACCGGCCAG 59.548 55.000 0.00 0.00 0.00 4.85
241 243 0.250945 TGTGAATTGCTTACCGGCCA 60.251 50.000 0.00 0.00 0.00 5.36
242 244 1.065551 GATGTGAATTGCTTACCGGCC 59.934 52.381 0.00 0.00 0.00 6.13
243 245 2.017049 AGATGTGAATTGCTTACCGGC 58.983 47.619 0.00 0.00 0.00 6.13
244 246 3.535561 AGAGATGTGAATTGCTTACCGG 58.464 45.455 0.00 0.00 0.00 5.28
249 259 3.120060 GCGTGAAGAGATGTGAATTGCTT 60.120 43.478 0.00 0.00 0.00 3.91
253 263 3.120060 GCAAGCGTGAAGAGATGTGAATT 60.120 43.478 2.99 0.00 0.00 2.17
279 289 0.667487 TCGAAACTGAAGCAGCGGAG 60.667 55.000 0.00 0.00 34.37 4.63
280 290 0.944311 GTCGAAACTGAAGCAGCGGA 60.944 55.000 0.00 0.00 34.37 5.54
281 291 1.221466 TGTCGAAACTGAAGCAGCGG 61.221 55.000 0.00 0.00 34.37 5.52
282 292 0.581529 TTGTCGAAACTGAAGCAGCG 59.418 50.000 0.00 0.00 34.37 5.18
283 293 1.069636 CCTTGTCGAAACTGAAGCAGC 60.070 52.381 0.00 0.00 34.37 5.25
284 294 1.532868 CCCTTGTCGAAACTGAAGCAG 59.467 52.381 0.00 0.00 37.52 4.24
285 295 1.140052 TCCCTTGTCGAAACTGAAGCA 59.860 47.619 0.00 0.00 0.00 3.91
286 296 1.878953 TCCCTTGTCGAAACTGAAGC 58.121 50.000 0.00 0.00 0.00 3.86
287 297 4.893424 TTTTCCCTTGTCGAAACTGAAG 57.107 40.909 0.00 0.00 0.00 3.02
288 298 4.439563 GCTTTTTCCCTTGTCGAAACTGAA 60.440 41.667 0.00 0.00 0.00 3.02
289 299 3.066203 GCTTTTTCCCTTGTCGAAACTGA 59.934 43.478 0.00 0.00 0.00 3.41
290 300 3.066760 AGCTTTTTCCCTTGTCGAAACTG 59.933 43.478 0.00 0.00 0.00 3.16
291 301 3.288092 AGCTTTTTCCCTTGTCGAAACT 58.712 40.909 0.00 0.00 0.00 2.66
292 302 3.710326 AGCTTTTTCCCTTGTCGAAAC 57.290 42.857 0.00 0.00 0.00 2.78
296 306 3.708563 TCAAAGCTTTTTCCCTTGTCG 57.291 42.857 9.53 0.00 0.00 4.35
298 308 3.324846 GGGATCAAAGCTTTTTCCCTTGT 59.675 43.478 32.11 8.63 42.37 3.16
310 320 1.039785 GGCAGGGAAGGGATCAAAGC 61.040 60.000 0.00 0.00 0.00 3.51
311 321 0.627986 AGGCAGGGAAGGGATCAAAG 59.372 55.000 0.00 0.00 0.00 2.77
312 322 0.332632 CAGGCAGGGAAGGGATCAAA 59.667 55.000 0.00 0.00 0.00 2.69
313 323 2.001803 CAGGCAGGGAAGGGATCAA 58.998 57.895 0.00 0.00 0.00 2.57
316 326 3.801997 CGCAGGCAGGGAAGGGAT 61.802 66.667 0.00 0.00 0.00 3.85
330 340 2.110213 AGAAACCAACCGAGCGCA 59.890 55.556 11.47 0.00 0.00 6.09
331 341 2.556287 CAGAAACCAACCGAGCGC 59.444 61.111 0.00 0.00 0.00 5.92
332 342 2.175184 CTGCAGAAACCAACCGAGCG 62.175 60.000 8.42 0.00 0.00 5.03
333 343 1.576421 CTGCAGAAACCAACCGAGC 59.424 57.895 8.42 0.00 0.00 5.03
335 345 0.394938 TAGCTGCAGAAACCAACCGA 59.605 50.000 20.43 0.00 0.00 4.69
336 346 0.517316 GTAGCTGCAGAAACCAACCG 59.483 55.000 20.43 0.00 0.00 4.44
337 347 0.881796 GGTAGCTGCAGAAACCAACC 59.118 55.000 25.14 15.11 32.04 3.77
338 348 0.517316 CGGTAGCTGCAGAAACCAAC 59.483 55.000 27.64 12.86 32.04 3.77
339 349 0.605319 CCGGTAGCTGCAGAAACCAA 60.605 55.000 27.64 3.14 32.04 3.67
415 431 4.998033 TGGGAGAAAACAAACAAACAAACC 59.002 37.500 0.00 0.00 0.00 3.27
436 452 6.923928 AAATTGGTTTGTTCATTCAGTTGG 57.076 33.333 0.00 0.00 0.00 3.77
453 469 2.879826 GGATCAGCAACCGAAAATTGG 58.120 47.619 0.00 0.00 0.00 3.16
486 502 3.825160 AAGCGGTTGGAAGCAGCGA 62.825 57.895 0.00 0.00 37.32 4.93
487 503 3.314388 GAAGCGGTTGGAAGCAGCG 62.314 63.158 3.70 0.00 38.18 5.18
545 561 6.273730 TCCCCAACAAGAATCCTAGTAGAAAA 59.726 38.462 0.00 0.00 0.00 2.29
547 563 5.347124 TCCCCAACAAGAATCCTAGTAGAA 58.653 41.667 0.00 0.00 0.00 2.10
548 564 4.955335 TCCCCAACAAGAATCCTAGTAGA 58.045 43.478 0.00 0.00 0.00 2.59
549 565 5.509840 CGATCCCCAACAAGAATCCTAGTAG 60.510 48.000 0.00 0.00 0.00 2.57
550 566 4.344102 CGATCCCCAACAAGAATCCTAGTA 59.656 45.833 0.00 0.00 0.00 1.82
551 567 3.134804 CGATCCCCAACAAGAATCCTAGT 59.865 47.826 0.00 0.00 0.00 2.57
552 568 3.733337 CGATCCCCAACAAGAATCCTAG 58.267 50.000 0.00 0.00 0.00 3.02
553 569 2.158813 GCGATCCCCAACAAGAATCCTA 60.159 50.000 0.00 0.00 0.00 2.94
554 570 1.408822 GCGATCCCCAACAAGAATCCT 60.409 52.381 0.00 0.00 0.00 3.24
555 571 1.025041 GCGATCCCCAACAAGAATCC 58.975 55.000 0.00 0.00 0.00 3.01
612 628 0.034477 GGACAAATCCCCACCGTGAT 60.034 55.000 0.00 0.00 39.39 3.06
634 650 1.230819 AGAGGGAGAGGGAGAGGGT 60.231 63.158 0.00 0.00 0.00 4.34
638 654 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
640 656 1.230650 TGAGGGAGAGGGAGAGGGA 60.231 63.158 0.00 0.00 0.00 4.20
642 658 1.227249 TAGTGAGGGAGAGGGAGAGG 58.773 60.000 0.00 0.00 0.00 3.69
648 668 1.337118 GGCTGATAGTGAGGGAGAGG 58.663 60.000 0.00 0.00 0.00 3.69
654 674 0.176680 AACTGCGGCTGATAGTGAGG 59.823 55.000 14.07 0.00 0.00 3.86
660 680 2.226330 ACAAACAAACTGCGGCTGATA 58.774 42.857 14.07 0.00 0.00 2.15
671 691 7.645735 ACAAATCCAACAAACAAACAAACAAAC 59.354 29.630 0.00 0.00 0.00 2.93
691 711 2.826128 GGGGTGGAAGAAGGAACAAATC 59.174 50.000 0.00 0.00 0.00 2.17
692 712 2.817839 CGGGGTGGAAGAAGGAACAAAT 60.818 50.000 0.00 0.00 0.00 2.32
693 713 1.477923 CGGGGTGGAAGAAGGAACAAA 60.478 52.381 0.00 0.00 0.00 2.83
694 714 0.109723 CGGGGTGGAAGAAGGAACAA 59.890 55.000 0.00 0.00 0.00 2.83
695 715 0.765135 TCGGGGTGGAAGAAGGAACA 60.765 55.000 0.00 0.00 0.00 3.18
696 716 0.036294 CTCGGGGTGGAAGAAGGAAC 60.036 60.000 0.00 0.00 0.00 3.62
723 791 2.335712 GCGGTGGGAGAAGGCAAAG 61.336 63.158 0.00 0.00 0.00 2.77
729 797 2.107141 GATCGGCGGTGGGAGAAG 59.893 66.667 7.21 0.00 0.00 2.85
753 827 0.919981 GTCAAAGATCAGAGCGCGAG 59.080 55.000 12.10 0.00 0.00 5.03
766 840 3.944015 GTCCAATCCCTCATCTGTCAAAG 59.056 47.826 0.00 0.00 0.00 2.77
772 846 0.533755 GGCGTCCAATCCCTCATCTG 60.534 60.000 0.00 0.00 0.00 2.90
780 854 0.953960 ACAAACGAGGCGTCCAATCC 60.954 55.000 0.00 0.00 39.99 3.01
800 874 0.239347 GAGAGGGAACGAACGAACGA 59.761 55.000 11.97 0.00 37.03 3.85
802 876 1.342796 GCGAGAGGGAACGAACGAAC 61.343 60.000 0.14 0.00 0.00 3.95
803 877 1.080974 GCGAGAGGGAACGAACGAA 60.081 57.895 0.14 0.00 0.00 3.85
804 878 2.564975 GCGAGAGGGAACGAACGA 59.435 61.111 0.14 0.00 0.00 3.85
820 894 2.213499 CATGGGGTATGAAAGAGACGC 58.787 52.381 0.00 0.00 39.21 5.19
822 896 3.281727 TGCATGGGGTATGAAAGAGAC 57.718 47.619 0.00 0.00 39.21 3.36
835 913 4.246206 CGCTGTCGCATGCATGGG 62.246 66.667 31.87 31.87 41.55 4.00
836 914 2.540228 ATCGCTGTCGCATGCATGG 61.540 57.895 27.34 17.21 35.30 3.66
845 923 2.323447 CATGCTGCATCGCTGTCG 59.677 61.111 13.10 0.00 0.00 4.35
875 953 2.290071 TGCAGAGTTTAGTTACTGGGGC 60.290 50.000 0.00 0.00 0.00 5.80
876 954 3.695830 TGCAGAGTTTAGTTACTGGGG 57.304 47.619 0.00 0.00 0.00 4.96
877 955 4.192317 GGATGCAGAGTTTAGTTACTGGG 58.808 47.826 0.00 0.00 0.00 4.45
878 956 3.865745 CGGATGCAGAGTTTAGTTACTGG 59.134 47.826 0.00 0.00 0.00 4.00
879 957 3.865745 CCGGATGCAGAGTTTAGTTACTG 59.134 47.826 0.00 0.00 0.00 2.74
880 958 3.679083 GCCGGATGCAGAGTTTAGTTACT 60.679 47.826 5.05 0.00 40.77 2.24
881 959 2.608090 GCCGGATGCAGAGTTTAGTTAC 59.392 50.000 5.05 0.00 40.77 2.50
943 1021 1.237458 GCCAGGGGATCCTCCTAGT 59.763 63.158 18.33 0.00 42.67 2.57
985 1086 2.203082 CCATCGATCCTCGGCCTGA 61.203 63.158 0.00 0.00 40.88 3.86
1014 1115 3.201290 CACATACTTCCTGATGCTGGTC 58.799 50.000 0.00 0.00 0.00 4.02
1229 1353 1.003696 GTACTTCTCCTTTGCAGGCCT 59.996 52.381 0.00 0.00 40.58 5.19
1231 1355 2.185004 TGTACTTCTCCTTTGCAGGC 57.815 50.000 0.00 0.00 40.58 4.85
1279 1403 1.077930 ATCATGCTCTTGCGCCTGT 60.078 52.632 4.18 0.00 43.34 4.00
1280 1404 0.814410 AGATCATGCTCTTGCGCCTG 60.814 55.000 4.18 0.00 43.34 4.85
1281 1405 0.107312 AAGATCATGCTCTTGCGCCT 60.107 50.000 10.92 0.00 43.34 5.52
1282 1406 0.307146 GAAGATCATGCTCTTGCGCC 59.693 55.000 16.21 0.00 43.34 6.53
1283 1407 1.297664 AGAAGATCATGCTCTTGCGC 58.702 50.000 16.21 0.00 43.34 6.09
1285 1409 3.940221 ACAGAAGAAGATCATGCTCTTGC 59.060 43.478 16.21 8.21 35.63 4.01
1286 1410 5.421277 AGACAGAAGAAGATCATGCTCTTG 58.579 41.667 16.21 5.23 35.63 3.02
1287 1411 5.187381 TGAGACAGAAGAAGATCATGCTCTT 59.813 40.000 11.50 11.50 38.18 2.85
1288 1412 4.710865 TGAGACAGAAGAAGATCATGCTCT 59.289 41.667 0.00 0.00 0.00 4.09
1290 1414 5.187381 TCTTGAGACAGAAGAAGATCATGCT 59.813 40.000 0.00 0.00 0.00 3.79
1291 1415 5.417811 TCTTGAGACAGAAGAAGATCATGC 58.582 41.667 0.00 0.00 0.00 4.06
1293 1417 7.387397 GTGTTTCTTGAGACAGAAGAAGATCAT 59.613 37.037 0.00 0.00 39.86 2.45
1294 1418 6.703607 GTGTTTCTTGAGACAGAAGAAGATCA 59.296 38.462 0.00 0.00 39.86 2.92
1295 1419 6.147000 GGTGTTTCTTGAGACAGAAGAAGATC 59.853 42.308 0.00 0.00 39.86 2.75
1301 1425 6.382869 AAATGGTGTTTCTTGAGACAGAAG 57.617 37.500 0.00 0.00 34.22 2.85
1304 1428 6.799512 AGAAAAATGGTGTTTCTTGAGACAG 58.200 36.000 0.00 0.00 41.47 3.51
1305 1429 6.376864 TGAGAAAAATGGTGTTTCTTGAGACA 59.623 34.615 1.29 0.00 43.65 3.41
1306 1430 6.795399 TGAGAAAAATGGTGTTTCTTGAGAC 58.205 36.000 1.29 0.00 43.65 3.36
1307 1431 7.285172 TGATGAGAAAAATGGTGTTTCTTGAGA 59.715 33.333 1.29 0.00 43.65 3.27
1308 1432 7.428020 TGATGAGAAAAATGGTGTTTCTTGAG 58.572 34.615 1.29 0.00 43.65 3.02
1309 1433 7.345422 TGATGAGAAAAATGGTGTTTCTTGA 57.655 32.000 1.29 0.00 43.65 3.02
1310 1434 7.654520 ACATGATGAGAAAAATGGTGTTTCTTG 59.345 33.333 0.00 0.00 43.65 3.02
1311 1435 7.654520 CACATGATGAGAAAAATGGTGTTTCTT 59.345 33.333 0.00 0.00 43.65 2.52
1313 1437 6.128742 GCACATGATGAGAAAAATGGTGTTTC 60.129 38.462 0.00 0.00 35.60 2.78
1316 1440 4.525487 AGCACATGATGAGAAAAATGGTGT 59.475 37.500 0.00 0.00 0.00 4.16
1322 1459 5.319453 AGAGGAAGCACATGATGAGAAAAA 58.681 37.500 0.00 0.00 0.00 1.94
1323 1460 4.914983 AGAGGAAGCACATGATGAGAAAA 58.085 39.130 0.00 0.00 0.00 2.29
1324 1461 4.564782 AGAGGAAGCACATGATGAGAAA 57.435 40.909 0.00 0.00 0.00 2.52
1329 1466 3.870274 TGAGAAGAGGAAGCACATGATG 58.130 45.455 0.00 0.00 0.00 3.07
1344 1481 6.438259 AGATGCATGAAAATGTCTGAGAAG 57.562 37.500 2.46 0.00 0.00 2.85
1346 1483 7.926674 TTAAGATGCATGAAAATGTCTGAGA 57.073 32.000 2.46 0.00 0.00 3.27
1347 1484 9.234384 GAATTAAGATGCATGAAAATGTCTGAG 57.766 33.333 2.46 0.00 0.00 3.35
1348 1485 8.192774 GGAATTAAGATGCATGAAAATGTCTGA 58.807 33.333 2.46 0.00 0.00 3.27
1356 1493 3.068024 GCCCGGAATTAAGATGCATGAAA 59.932 43.478 2.46 0.00 0.00 2.69
1419 1556 2.185608 GTCTTGGAGAGGCGCCTC 59.814 66.667 43.08 43.08 43.03 4.70
1488 1719 3.069079 ACAGCAGACATCATTTGCTCT 57.931 42.857 0.00 0.00 45.75 4.09
1489 1720 3.937706 AGTACAGCAGACATCATTTGCTC 59.062 43.478 0.00 0.00 45.75 4.26
1531 1762 7.042335 CCAGTCCACCTTAATTAGTTACTGAG 58.958 42.308 13.51 0.00 32.73 3.35
1544 1775 3.522759 TCATAACCACCAGTCCACCTTA 58.477 45.455 0.00 0.00 0.00 2.69
1545 1776 2.344592 TCATAACCACCAGTCCACCTT 58.655 47.619 0.00 0.00 0.00 3.50
1546 1777 2.038863 TCATAACCACCAGTCCACCT 57.961 50.000 0.00 0.00 0.00 4.00
1553 1784 6.600822 AGAAGTTCATCAATCATAACCACCAG 59.399 38.462 5.50 0.00 0.00 4.00
1577 1808 8.511604 ACCTGGTGAATAAATACAGAAATGAG 57.488 34.615 0.00 0.00 0.00 2.90
1579 1810 7.489113 GCAACCTGGTGAATAAATACAGAAATG 59.511 37.037 0.00 0.00 0.00 2.32
1584 1815 5.415701 AGTGCAACCTGGTGAATAAATACAG 59.584 40.000 0.00 0.00 37.80 2.74
1591 1822 3.072330 TCTTCAGTGCAACCTGGTGAATA 59.928 43.478 0.00 0.00 37.80 1.75
1597 1828 1.845809 GCGTCTTCAGTGCAACCTGG 61.846 60.000 4.64 0.00 37.80 4.45
1615 1846 2.031683 GGCACGGTGTATGACAATTAGC 59.968 50.000 10.24 0.00 0.00 3.09
1673 1904 3.548415 CCGCTAGATCTTCCGTAACTGAC 60.548 52.174 0.00 0.00 0.00 3.51
1732 1963 2.743183 GCAACTAGTACCATCAGGGCTG 60.743 54.545 0.00 0.00 42.05 4.85
1764 1995 3.648545 AGATACTAATCCAAGACCAGGGC 59.351 47.826 0.00 0.00 31.98 5.19
1808 2041 6.098679 CAGACATGTCAGGAGAAAGTTCTAG 58.901 44.000 27.02 0.00 37.73 2.43
1827 2064 1.462616 AGCTGCAAACACAACAGACA 58.537 45.000 1.02 0.00 33.10 3.41
1828 2065 2.187707 CAAGCTGCAAACACAACAGAC 58.812 47.619 1.02 0.00 33.10 3.51
1829 2066 1.134753 CCAAGCTGCAAACACAACAGA 59.865 47.619 1.02 0.00 33.10 3.41
1830 2067 1.563111 CCAAGCTGCAAACACAACAG 58.437 50.000 1.02 0.00 34.48 3.16
1876 2113 5.079643 AGCCTCTCTTCCAAAAATAAAGCA 58.920 37.500 0.00 0.00 0.00 3.91
1882 2119 3.703001 TCGAGCCTCTCTTCCAAAAAT 57.297 42.857 0.00 0.00 0.00 1.82
1927 2164 1.628340 ACCAATGGATCCAGTTCGACA 59.372 47.619 21.33 0.00 0.00 4.35
1984 2221 4.222810 GGACCAAGCCAATATTTGTTTCCT 59.777 41.667 0.00 0.00 0.00 3.36
2000 2237 3.282021 CATTGACACCCTATGGACCAAG 58.718 50.000 0.00 0.00 34.81 3.61
2012 2249 4.076394 TGCTAAAGTAACCCATTGACACC 58.924 43.478 0.00 0.00 0.00 4.16
2046 2283 9.726438 GTGTTCCCTGCAGATAATAGTTATTAT 57.274 33.333 17.39 4.48 40.53 1.28
2047 2284 7.870954 CGTGTTCCCTGCAGATAATAGTTATTA 59.129 37.037 17.39 0.00 33.16 0.98
2048 2285 6.706270 CGTGTTCCCTGCAGATAATAGTTATT 59.294 38.462 17.39 0.00 0.00 1.40
2163 2400 4.404507 TTCACTTTGCGCAGAATAAGAC 57.595 40.909 22.74 0.00 0.00 3.01
2165 2402 4.024438 CGATTCACTTTGCGCAGAATAAG 58.976 43.478 19.02 17.60 31.35 1.73
2188 2425 3.710677 TGGCCCCTCAAAAATATTGGATG 59.289 43.478 0.00 0.00 0.00 3.51
2206 2443 6.091713 GCAATGCAGATTTAAATATCATGGCC 59.908 38.462 17.19 0.00 0.00 5.36
2208 2445 8.827177 AAGCAATGCAGATTTAAATATCATGG 57.173 30.769 8.35 4.21 0.00 3.66
2236 2474 6.631971 TGCGGCTGAAAATATGAATCAATA 57.368 33.333 0.00 0.00 0.00 1.90
2237 2475 5.518848 TGCGGCTGAAAATATGAATCAAT 57.481 34.783 0.00 0.00 0.00 2.57
2461 2701 5.811190 TCTTACAAAATAAGCTAGTGGCCA 58.189 37.500 0.00 0.00 43.05 5.36
2483 2723 9.793252 ACAAATGAAGCATACAAGATAACAATC 57.207 29.630 0.00 0.00 0.00 2.67
2485 2725 9.979578 AAACAAATGAAGCATACAAGATAACAA 57.020 25.926 0.00 0.00 0.00 2.83
2503 2743 7.095910 TGCCAATGGTGTAAGATAAACAAATG 58.904 34.615 0.00 0.00 0.00 2.32
2512 2752 4.885907 CAGAAGATGCCAATGGTGTAAGAT 59.114 41.667 0.00 0.00 0.00 2.40
2526 2766 4.394300 AGAACTGCATTGTACAGAAGATGC 59.606 41.667 19.01 19.01 43.83 3.91
2536 2776 5.657470 GCATATCGAAGAACTGCATTGTA 57.343 39.130 0.00 0.00 44.13 2.41
2658 2898 5.641636 GTGTTGTGGAAAACCAATTCAAACT 59.358 36.000 0.00 0.00 0.00 2.66
2707 2947 7.535139 CACAACCCAAAAATGACGATAAGTAT 58.465 34.615 0.00 0.00 0.00 2.12
2719 2959 0.835941 TGCCTGCACAACCCAAAAAT 59.164 45.000 0.00 0.00 0.00 1.82
2813 3053 1.666189 GAGGATGCGAACTAAACCTGC 59.334 52.381 0.00 0.00 0.00 4.85
2821 3061 1.410004 TAATCCCGAGGATGCGAACT 58.590 50.000 6.24 0.00 42.27 3.01
2868 3108 6.884295 AGGCTATCAGCAAGTTTACAAACATA 59.116 34.615 7.53 0.00 44.75 2.29
2869 3109 5.711976 AGGCTATCAGCAAGTTTACAAACAT 59.288 36.000 7.53 0.00 44.75 2.71
2870 3110 5.070001 AGGCTATCAGCAAGTTTACAAACA 58.930 37.500 7.53 0.00 44.75 2.83
2895 3135 0.940126 GAGGCTGCATGTGTTATCGG 59.060 55.000 0.50 0.00 0.00 4.18
2916 3156 1.807139 TAGCTTGCAAGAATGACGCA 58.193 45.000 30.39 2.81 0.00 5.24
3014 3254 7.988028 GGATACTAGCTGAACTGTAAGGAAATT 59.012 37.037 0.00 0.00 39.30 1.82
3015 3255 7.501844 GGATACTAGCTGAACTGTAAGGAAAT 58.498 38.462 0.00 0.00 39.30 2.17
3051 3293 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3052 3294 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3053 3295 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3054 3296 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3055 3297 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3056 3298 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3057 3299 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3058 3300 4.755123 ACTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3059 3301 6.635030 AACTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
3061 3303 6.805713 ACAAACTTGAGTCACTTATTTTGGG 58.194 36.000 9.57 0.00 0.00 4.12
3062 3304 8.621286 AGTACAAACTTGAGTCACTTATTTTGG 58.379 33.333 9.57 0.00 29.00 3.28
3065 3307 8.989980 GCTAGTACAAACTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 37.15 1.40
3067 3309 7.897864 AGCTAGTACAAACTTGAGTCACTTAT 58.102 34.615 0.00 0.00 37.15 1.73
3068 3310 7.286215 AGCTAGTACAAACTTGAGTCACTTA 57.714 36.000 0.00 0.00 37.15 2.24
3070 3312 5.793030 AGCTAGTACAAACTTGAGTCACT 57.207 39.130 0.00 0.00 37.15 3.41
3071 3313 6.258068 ACAAAGCTAGTACAAACTTGAGTCAC 59.742 38.462 0.00 0.00 37.15 3.67
3073 3315 6.846325 ACAAAGCTAGTACAAACTTGAGTC 57.154 37.500 0.00 0.00 37.15 3.36
3074 3316 7.498443 ACTACAAAGCTAGTACAAACTTGAGT 58.502 34.615 0.00 1.43 37.15 3.41
3075 3317 7.948278 ACTACAAAGCTAGTACAAACTTGAG 57.052 36.000 0.00 0.00 37.15 3.02
3076 3318 8.807667 GTACTACAAAGCTAGTACAAACTTGA 57.192 34.615 16.32 0.00 44.61 3.02
3092 3334 9.826574 ATAAGTGACTCAAGTTTGTACTACAAA 57.173 29.630 9.86 9.86 44.91 2.83
3093 3335 9.826574 AATAAGTGACTCAAGTTTGTACTACAA 57.173 29.630 0.00 0.00 36.11 2.41
3094 3336 9.826574 AAATAAGTGACTCAAGTTTGTACTACA 57.173 29.630 0.00 0.00 33.17 2.74
3097 3339 8.621286 CCAAAATAAGTGACTCAAGTTTGTACT 58.379 33.333 15.07 0.00 35.68 2.73
3098 3340 7.860872 CCCAAAATAAGTGACTCAAGTTTGTAC 59.139 37.037 15.07 0.00 0.00 2.90
3099 3341 7.776030 TCCCAAAATAAGTGACTCAAGTTTGTA 59.224 33.333 15.07 5.29 0.00 2.41
3100 3342 6.605594 TCCCAAAATAAGTGACTCAAGTTTGT 59.394 34.615 15.07 0.00 0.00 2.83
3101 3343 6.918022 GTCCCAAAATAAGTGACTCAAGTTTG 59.082 38.462 11.50 11.50 0.00 2.93
3102 3344 6.238648 CGTCCCAAAATAAGTGACTCAAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
3103 3345 5.238650 CGTCCCAAAATAAGTGACTCAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
3104 3346 4.755123 CGTCCCAAAATAAGTGACTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
3105 3347 4.154195 CCGTCCCAAAATAAGTGACTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3106 3348 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3107 3349 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3108 3350 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3109 3351 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3110 3352 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3111 3353 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3112 3354 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3113 3355 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3114 3356 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3115 3357 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3116 3358 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3117 3359 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3118 3360 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3119 3361 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3120 3362 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3121 3363 3.116862 AGAATTATACTCCCTCCGTCCCA 60.117 47.826 0.00 0.00 0.00 4.37
3122 3364 3.508426 AGAATTATACTCCCTCCGTCCC 58.492 50.000 0.00 0.00 0.00 4.46
3123 3365 6.854091 ATAAGAATTATACTCCCTCCGTCC 57.146 41.667 0.00 0.00 40.05 4.79
3150 3392 9.793259 TTTCTTACTTTAGTCTTCCATCACATT 57.207 29.630 0.00 0.00 0.00 2.71
3180 3422 3.056250 TGGAAAGCTCAGTTTTGCAACAA 60.056 39.130 5.70 0.00 32.35 2.83
3181 3423 2.495270 TGGAAAGCTCAGTTTTGCAACA 59.505 40.909 5.70 0.00 32.35 3.33
3192 3434 4.036734 GTCAACTGAACAATGGAAAGCTCA 59.963 41.667 0.00 0.00 0.00 4.26
3201 3443 6.151648 AGGTTCATATGGTCAACTGAACAATG 59.848 38.462 20.36 7.37 45.93 2.82
3219 3461 7.872483 GGACAAACAATGACAATAAAGGTTCAT 59.128 33.333 0.00 0.00 0.00 2.57
3222 3464 7.360113 AGGACAAACAATGACAATAAAGGTT 57.640 32.000 0.00 0.00 0.00 3.50
3257 3499 6.514063 ACGTCCTAGAAATATTAGCAAGGAC 58.486 40.000 19.57 19.57 45.19 3.85
3278 3521 2.543653 GCCTGCAAACAAATGAAGACGT 60.544 45.455 0.00 0.00 0.00 4.34
3280 3523 3.054878 CAGCCTGCAAACAAATGAAGAC 58.945 45.455 0.00 0.00 0.00 3.01
3360 3603 4.067944 AGTTGATACTTGAGGAGGAGGT 57.932 45.455 0.00 0.00 0.00 3.85
3413 3656 2.295349 TCGACTCTAGGCACGACTTTTT 59.705 45.455 0.00 0.00 0.00 1.94
3643 3888 8.775220 TGTTTCTAACATTTCACATGTTAACG 57.225 30.769 0.00 0.00 41.99 3.18
3693 3941 0.798776 GAGGTGAGAATTGGCACACG 59.201 55.000 8.90 0.00 39.29 4.49
3701 3949 2.039480 TCTGCAGCAAGAGGTGAGAATT 59.961 45.455 9.47 0.00 45.95 2.17
3777 4025 2.359230 GGTGCTGTGACCAGAGCC 60.359 66.667 15.19 7.61 45.99 4.70
3828 4076 6.263168 AGAAAGTGTTTCAGGTATTCACCAAG 59.737 38.462 2.44 0.00 42.21 3.61
3857 4105 4.957296 TCAGACACATGATCATCATCAGG 58.043 43.478 4.86 0.00 44.84 3.86
3858 4106 6.238402 GGTTTCAGACACATGATCATCATCAG 60.238 42.308 4.86 1.25 42.53 2.90
3860 4108 5.587443 TGGTTTCAGACACATGATCATCATC 59.413 40.000 4.86 3.84 34.28 2.92
3861 4109 5.503002 TGGTTTCAGACACATGATCATCAT 58.497 37.500 4.86 0.00 37.65 2.45
3862 4110 4.909001 TGGTTTCAGACACATGATCATCA 58.091 39.130 4.86 0.00 0.00 3.07
3863 4111 5.885230 TTGGTTTCAGACACATGATCATC 57.115 39.130 4.86 0.00 0.00 2.92
3864 4112 5.771666 AGTTTGGTTTCAGACACATGATCAT 59.228 36.000 1.18 1.18 31.18 2.45
3874 4126 5.748630 GGAAAATGTCAGTTTGGTTTCAGAC 59.251 40.000 2.44 0.00 0.00 3.51
3882 4134 1.665735 CGCGGGAAAATGTCAGTTTGG 60.666 52.381 2.44 0.00 0.00 3.28
3902 4154 3.391382 AGTCCACCGGCCTGTAGC 61.391 66.667 0.00 0.00 42.60 3.58
4138 4390 2.348998 GCTGCTGGTACTGGTGCT 59.651 61.111 0.00 0.00 0.00 4.40
4139 4391 2.032528 TGCTGCTGGTACTGGTGC 59.967 61.111 0.00 0.00 0.00 5.01
4140 4392 0.608130 TACTGCTGCTGGTACTGGTG 59.392 55.000 11.29 0.00 0.00 4.17
4141 4393 0.608640 GTACTGCTGCTGGTACTGGT 59.391 55.000 20.46 0.75 36.39 4.00
4142 4394 0.108138 GGTACTGCTGCTGGTACTGG 60.108 60.000 23.90 0.00 38.52 4.00
4143 4395 0.608130 TGGTACTGCTGCTGGTACTG 59.392 55.000 23.90 3.55 38.52 2.74
4144 4396 0.898320 CTGGTACTGCTGCTGGTACT 59.102 55.000 23.90 5.05 38.52 2.73
4145 4397 3.442996 CTGGTACTGCTGCTGGTAC 57.557 57.895 19.96 19.96 37.97 3.34
4295 4547 1.373873 GTCGAACGGGTTGGAGGAC 60.374 63.158 0.00 0.00 0.00 3.85
4337 4604 1.044231 TCGCCGGAGCATTAGGGTAA 61.044 55.000 5.05 0.00 39.83 2.85
4344 4611 2.898840 CTGCATCGCCGGAGCATT 60.899 61.111 5.05 0.00 39.83 3.56
4384 4651 0.397941 CTACATCATGCCGGTCCCAT 59.602 55.000 1.90 0.00 0.00 4.00
4385 4652 0.689412 TCTACATCATGCCGGTCCCA 60.689 55.000 1.90 0.00 0.00 4.37
4453 4720 1.520666 CAGGTGCCTACTAACCCGG 59.479 63.158 0.00 0.00 37.13 5.73
4456 4723 0.981943 ACACCAGGTGCCTACTAACC 59.018 55.000 20.48 0.00 36.98 2.85
4466 4733 7.113658 ACTCATCTAAACTATACACCAGGTG 57.886 40.000 18.93 18.93 39.75 4.00
4482 4749 3.344535 TCCCCTGCCATTACTCATCTA 57.655 47.619 0.00 0.00 0.00 1.98
4752 5028 3.692791 AGTTTGCGAGGTTTGACTTTC 57.307 42.857 0.00 0.00 0.00 2.62
4939 5222 3.068560 TCCGTCCGTTTCAAAATGTAGG 58.931 45.455 0.00 0.00 0.00 3.18
4942 5225 2.567985 ACTCCGTCCGTTTCAAAATGT 58.432 42.857 0.00 0.00 0.00 2.71
4947 5230 5.138125 ACTAAATACTCCGTCCGTTTCAA 57.862 39.130 0.00 0.00 0.00 2.69
4953 5236 5.173664 AGGAAAAACTAAATACTCCGTCCG 58.826 41.667 0.00 0.00 0.00 4.79
4956 5239 8.454570 TCAAAAGGAAAAACTAAATACTCCGT 57.545 30.769 0.00 0.00 0.00 4.69
5061 5345 5.164233 TCTCGCTTTTGACTAACATCTGAG 58.836 41.667 0.00 0.00 0.00 3.35
5070 5354 5.817296 ACATAATGCATCTCGCTTTTGACTA 59.183 36.000 0.00 0.00 43.06 2.59
5074 5358 5.334319 TCAACATAATGCATCTCGCTTTTG 58.666 37.500 0.00 0.00 43.06 2.44
5174 5458 5.189342 ACTTCCATTGATGATCTCACTCACT 59.811 40.000 0.00 0.00 32.17 3.41
5175 5459 5.426504 ACTTCCATTGATGATCTCACTCAC 58.573 41.667 0.00 0.00 32.17 3.51
5176 5460 5.688814 ACTTCCATTGATGATCTCACTCA 57.311 39.130 0.00 0.00 32.17 3.41
5177 5461 6.111382 TGAACTTCCATTGATGATCTCACTC 58.889 40.000 0.00 0.00 32.17 3.51
5245 5537 4.333926 GTGAAGTGATCCTATTCAGTTGCC 59.666 45.833 4.99 0.00 38.95 4.52
5259 5551 8.321353 TGACCTTGTTTATATCAGTGAAGTGAT 58.679 33.333 0.00 5.95 40.40 3.06
5350 5642 2.027625 GCGTGTTTCTAGCGGCACT 61.028 57.895 1.45 0.00 0.00 4.40
5353 5645 1.736645 TCTGCGTGTTTCTAGCGGC 60.737 57.895 0.00 0.00 37.20 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.