Multiple sequence alignment - TraesCS6B01G406400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G406400 chr6B 100.000 3615 0 0 1 3615 680893305 680896919 0.000000e+00 6676.0
1 TraesCS6B01G406400 chr6B 94.387 1728 72 14 994 2703 680768031 680766311 0.000000e+00 2630.0
2 TraesCS6B01G406400 chr6B 96.456 790 24 4 2828 3615 680766313 680765526 0.000000e+00 1301.0
3 TraesCS6B01G406400 chr6B 88.344 489 25 18 531 999 680768549 680768073 3.150000e-155 558.0
4 TraesCS6B01G406400 chr6B 75.153 326 79 2 1978 2302 6681920 6681596 6.250000e-33 152.0
5 TraesCS6B01G406400 chr6B 74.085 328 79 5 1978 2302 6605231 6605555 2.930000e-26 130.0
6 TraesCS6B01G406400 chr6A 91.898 1802 95 27 855 2621 595004697 595002912 0.000000e+00 2471.0
7 TraesCS6B01G406400 chr6A 81.525 341 32 19 497 834 595004986 595004674 5.990000e-63 252.0
8 TraesCS6B01G406400 chr6A 94.286 140 8 0 1 140 611336578 611336717 7.860000e-52 215.0
9 TraesCS6B01G406400 chr6D 90.171 1872 121 33 857 2677 449162097 449160238 0.000000e+00 2379.0
10 TraesCS6B01G406400 chr6D 91.848 368 27 3 3231 3596 448917142 448916776 8.950000e-141 510.0
11 TraesCS6B01G406400 chr6D 97.449 196 5 0 1553 1748 449271456 449271261 5.780000e-88 335.0
12 TraesCS6B01G406400 chr6D 96.454 141 5 0 1162 1302 449271122 449271262 2.170000e-57 233.0
13 TraesCS6B01G406400 chr6D 84.274 248 18 14 565 805 449158444 449158211 4.700000e-54 222.0
14 TraesCS6B01G406400 chr6D 80.597 268 28 15 566 833 449162320 449162077 6.160000e-43 185.0
15 TraesCS6B01G406400 chr6D 80.913 241 26 11 3286 3507 448917327 448917088 4.800000e-39 172.0
16 TraesCS6B01G406400 chr6D 79.487 312 11 22 855 1134 449269858 449270148 4.800000e-39 172.0
17 TraesCS6B01G406400 chr6D 73.867 375 88 9 1930 2301 3317489 3317856 1.350000e-29 141.0
18 TraesCS6B01G406400 chr6D 79.186 221 23 14 619 826 449269663 449269873 8.140000e-27 132.0
19 TraesCS6B01G406400 chr6D 79.268 164 17 9 2590 2750 449139873 449139724 8.260000e-17 99.0
20 TraesCS6B01G406400 chr6D 83.186 113 9 4 855 967 449256717 449256819 1.070000e-15 95.3
21 TraesCS6B01G406400 chr6D 97.222 36 1 0 2916 2951 54373520 54373485 1.080000e-05 62.1
22 TraesCS6B01G406400 chr4D 82.715 1267 180 24 998 2241 381737441 381738691 0.000000e+00 1090.0
23 TraesCS6B01G406400 chr4D 81.548 168 28 2 2449 2616 381747005 381747169 6.300000e-28 135.0
24 TraesCS6B01G406400 chr4A 82.538 922 135 15 998 1905 505278696 505277787 0.000000e+00 787.0
25 TraesCS6B01G406400 chr4A 97.436 39 1 0 2913 2951 626960497 626960535 2.330000e-07 67.6
26 TraesCS6B01G406400 chrUn 94.752 343 15 3 3255 3596 227613875 227613535 6.870000e-147 531.0
27 TraesCS6B01G406400 chrUn 94.752 343 15 3 3255 3596 253545413 253545753 6.870000e-147 531.0
28 TraesCS6B01G406400 chr2B 75.926 540 110 15 1977 2506 727221829 727221300 3.580000e-65 259.0
29 TraesCS6B01G406400 chr2B 100.000 28 0 0 3027 3054 526899884 526899911 7.000000e-03 52.8
30 TraesCS6B01G406400 chr2D 75.325 539 113 18 1978 2506 598729002 598728474 1.300000e-59 241.0
31 TraesCS6B01G406400 chr7A 95.000 140 7 0 1 140 493657635 493657774 1.690000e-53 220.0
32 TraesCS6B01G406400 chr7A 92.857 140 10 0 1 140 322239964 322239825 1.700000e-48 204.0
33 TraesCS6B01G406400 chr7A 85.437 103 14 1 2402 2504 157153514 157153413 4.940000e-19 106.0
34 TraesCS6B01G406400 chr7A 93.333 45 1 2 2905 2949 655552193 655552235 8.380000e-07 65.8
35 TraesCS6B01G406400 chr7A 97.222 36 1 0 2916 2951 680020315 680020350 1.080000e-05 62.1
36 TraesCS6B01G406400 chr2A 91.837 147 12 0 1 147 419451200 419451054 4.730000e-49 206.0
37 TraesCS6B01G406400 chr5A 93.382 136 9 0 5 140 353558376 353558511 6.120000e-48 202.0
38 TraesCS6B01G406400 chr3B 92.857 140 9 1 1 140 307476907 307476769 6.120000e-48 202.0
39 TraesCS6B01G406400 chr3B 86.667 60 8 0 2994 3053 435957245 435957304 2.330000e-07 67.6
40 TraesCS6B01G406400 chr3A 91.667 144 11 1 1 144 191960104 191960246 7.920000e-47 198.0
41 TraesCS6B01G406400 chr7B 89.103 156 14 3 1 154 424757195 424757041 1.320000e-44 191.0
42 TraesCS6B01G406400 chr1D 90.000 150 11 4 14 162 60382911 60382765 1.320000e-44 191.0
43 TraesCS6B01G406400 chr1D 97.222 36 1 0 2916 2951 449274094 449274129 1.080000e-05 62.1
44 TraesCS6B01G406400 chr1D 90.909 44 3 1 1342 1385 492537589 492537547 1.400000e-04 58.4
45 TraesCS6B01G406400 chr7D 83.810 105 15 2 2402 2504 155305417 155305313 8.260000e-17 99.0
46 TraesCS6B01G406400 chr1A 87.879 66 6 2 2994 3058 58952587 58952651 3.870000e-10 76.8
47 TraesCS6B01G406400 chr1A 97.297 37 1 0 2913 2949 48711078 48711114 3.010000e-06 63.9
48 TraesCS6B01G406400 chr1A 90.909 44 3 1 1342 1385 590997060 590997018 1.400000e-04 58.4
49 TraesCS6B01G406400 chr3D 91.667 48 3 1 2903 2949 459485747 459485794 8.380000e-07 65.8
50 TraesCS6B01G406400 chr5B 97.222 36 1 0 2916 2951 127198210 127198245 1.080000e-05 62.1
51 TraesCS6B01G406400 chr1B 90.909 44 3 1 1342 1385 685233096 685233054 1.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G406400 chr6B 680893305 680896919 3614 False 6676.000000 6676 100.000000 1 3615 1 chr6B.!!$F2 3614
1 TraesCS6B01G406400 chr6B 680765526 680768549 3023 True 1496.333333 2630 93.062333 531 3615 3 chr6B.!!$R2 3084
2 TraesCS6B01G406400 chr6A 595002912 595004986 2074 True 1361.500000 2471 86.711500 497 2621 2 chr6A.!!$R1 2124
3 TraesCS6B01G406400 chr6D 449158211 449162320 4109 True 928.666667 2379 85.014000 565 2677 3 chr6D.!!$R5 2112
4 TraesCS6B01G406400 chr6D 448916776 448917327 551 True 341.000000 510 86.380500 3231 3596 2 chr6D.!!$R4 365
5 TraesCS6B01G406400 chr4D 381737441 381738691 1250 False 1090.000000 1090 82.715000 998 2241 1 chr4D.!!$F1 1243
6 TraesCS6B01G406400 chr4A 505277787 505278696 909 True 787.000000 787 82.538000 998 1905 1 chr4A.!!$R1 907
7 TraesCS6B01G406400 chr2B 727221300 727221829 529 True 259.000000 259 75.926000 1977 2506 1 chr2B.!!$R1 529
8 TraesCS6B01G406400 chr2D 598728474 598729002 528 True 241.000000 241 75.325000 1978 2506 1 chr2D.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.036306 AGGTTTTAGTCCAGTGGGCG 59.964 55.0 8.44 0.00 0.00 6.13 F
465 466 0.105593 CCAGCTGATCTACATGGCGT 59.894 55.0 17.39 0.00 0.00 5.68 F
592 595 0.326264 CAACACCTTCCCAGCTAGCT 59.674 55.0 12.68 12.68 0.00 3.32 F
1078 1171 0.546747 AACCATCCTCCGGACCAAGA 60.547 55.0 0.00 0.00 32.98 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1695 0.251832 TCTCCTTGAACTCCCTCGCT 60.252 55.000 0.00 0.00 0.00 4.93 R
1964 2091 0.373370 TTCTGCATACGCGCATGAAC 59.627 50.000 23.20 6.74 42.06 3.18 R
1973 2100 1.390123 CGTGAACAGGTTCTGCATACG 59.610 52.381 12.86 9.84 40.14 3.06 R
2704 2875 0.451783 GCCCTCAGCAATACGGTTTG 59.548 55.000 0.00 0.00 42.97 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.599041 ACGGAATGATGGGATTTTTGAGA 58.401 39.130 0.00 0.00 0.00 3.27
23 24 5.203528 ACGGAATGATGGGATTTTTGAGAT 58.796 37.500 0.00 0.00 0.00 2.75
27 28 7.392673 CGGAATGATGGGATTTTTGAGATATCT 59.607 37.037 4.47 4.47 0.00 1.98
28 29 9.745018 GGAATGATGGGATTTTTGAGATATCTA 57.255 33.333 4.89 0.00 0.00 1.98
32 33 9.524496 TGATGGGATTTTTGAGATATCTAATGG 57.476 33.333 4.89 0.00 0.00 3.16
47 48 9.617975 GATATCTAATGGTATTTTTGAGCAAGC 57.382 33.333 0.00 0.00 0.00 4.01
49 50 7.408756 TCTAATGGTATTTTTGAGCAAGCAT 57.591 32.000 0.00 0.00 0.00 3.79
50 51 7.483307 TCTAATGGTATTTTTGAGCAAGCATC 58.517 34.615 0.00 0.00 0.00 3.91
52 53 5.314923 TGGTATTTTTGAGCAAGCATCTC 57.685 39.130 0.00 0.00 0.00 2.75
53 54 4.766373 TGGTATTTTTGAGCAAGCATCTCA 59.234 37.500 0.00 0.00 38.67 3.27
54 55 5.098211 GGTATTTTTGAGCAAGCATCTCAC 58.902 41.667 2.64 0.00 39.99 3.51
55 56 4.859304 ATTTTTGAGCAAGCATCTCACA 57.141 36.364 2.64 0.00 39.99 3.58
56 57 3.909776 TTTTGAGCAAGCATCTCACAG 57.090 42.857 2.64 0.00 39.99 3.66
57 58 2.845363 TTGAGCAAGCATCTCACAGA 57.155 45.000 2.64 0.00 39.99 3.41
58 59 3.345508 TTGAGCAAGCATCTCACAGAT 57.654 42.857 2.64 0.00 39.99 2.90
60 61 1.859703 GAGCAAGCATCTCACAGATCG 59.140 52.381 0.00 0.00 31.32 3.69
61 62 1.479730 AGCAAGCATCTCACAGATCGA 59.520 47.619 0.00 0.00 31.32 3.59
63 64 2.221286 GCAAGCATCTCACAGATCGATG 59.779 50.000 0.54 0.00 38.02 3.84
64 65 2.801111 CAAGCATCTCACAGATCGATGG 59.199 50.000 0.54 0.00 36.07 3.51
66 67 1.539712 GCATCTCACAGATCGATGGCA 60.540 52.381 0.54 0.00 36.07 4.92
67 68 2.870835 GCATCTCACAGATCGATGGCAT 60.871 50.000 0.54 0.00 36.07 4.40
69 70 3.548745 TCTCACAGATCGATGGCATTT 57.451 42.857 0.54 0.00 0.00 2.32
70 71 3.877559 TCTCACAGATCGATGGCATTTT 58.122 40.909 0.54 0.00 0.00 1.82
71 72 4.264253 TCTCACAGATCGATGGCATTTTT 58.736 39.130 0.54 0.00 0.00 1.94
72 73 4.095334 TCTCACAGATCGATGGCATTTTTG 59.905 41.667 0.54 0.00 0.00 2.44
73 74 4.009002 TCACAGATCGATGGCATTTTTGA 58.991 39.130 0.54 0.00 0.00 2.69
74 75 4.095334 TCACAGATCGATGGCATTTTTGAG 59.905 41.667 0.54 0.00 0.00 3.02
75 76 4.012374 ACAGATCGATGGCATTTTTGAGT 58.988 39.130 0.54 0.00 0.00 3.41
76 77 5.065090 CACAGATCGATGGCATTTTTGAGTA 59.935 40.000 0.54 0.00 0.00 2.59
78 79 5.295292 CAGATCGATGGCATTTTTGAGTAGT 59.705 40.000 0.54 0.00 0.00 2.73
80 81 5.295431 TCGATGGCATTTTTGAGTAGTTG 57.705 39.130 0.00 0.00 0.00 3.16
82 83 5.471797 TCGATGGCATTTTTGAGTAGTTGAA 59.528 36.000 0.00 0.00 0.00 2.69
83 84 6.016693 TCGATGGCATTTTTGAGTAGTTGAAA 60.017 34.615 0.00 0.00 0.00 2.69
84 85 6.088085 CGATGGCATTTTTGAGTAGTTGAAAC 59.912 38.462 0.00 0.00 0.00 2.78
87 88 6.978080 TGGCATTTTTGAGTAGTTGAAACTTC 59.022 34.615 0.21 0.00 40.37 3.01
88 89 7.147915 TGGCATTTTTGAGTAGTTGAAACTTCT 60.148 33.333 0.21 1.41 39.03 2.85
89 90 8.349983 GGCATTTTTGAGTAGTTGAAACTTCTA 58.650 33.333 0.21 0.00 36.88 2.10
90 91 9.730420 GCATTTTTGAGTAGTTGAAACTTCTAA 57.270 29.630 0.21 0.00 36.88 2.10
95 96 9.607988 TTTGAGTAGTTGAAACTTCTAATGACA 57.392 29.630 0.21 0.00 36.88 3.58
96 97 9.607988 TTGAGTAGTTGAAACTTCTAATGACAA 57.392 29.630 0.21 0.11 36.88 3.18
97 98 9.607988 TGAGTAGTTGAAACTTCTAATGACAAA 57.392 29.630 0.21 0.00 36.88 2.83
105 106 9.607988 TGAAACTTCTAATGACAAAACTGAGTA 57.392 29.630 0.00 0.00 0.00 2.59
107 108 9.614792 AAACTTCTAATGACAAAACTGAGTAGT 57.385 29.630 0.00 0.00 39.32 2.73
108 109 8.594881 ACTTCTAATGACAAAACTGAGTAGTG 57.405 34.615 0.00 0.00 37.19 2.74
109 110 7.657761 ACTTCTAATGACAAAACTGAGTAGTGG 59.342 37.037 0.00 0.00 37.19 4.00
110 111 6.464222 TCTAATGACAAAACTGAGTAGTGGG 58.536 40.000 0.00 0.00 37.19 4.61
112 113 4.067972 TGACAAAACTGAGTAGTGGGAC 57.932 45.455 0.00 0.00 37.19 4.46
113 114 3.452990 TGACAAAACTGAGTAGTGGGACA 59.547 43.478 0.00 0.00 37.19 4.02
133 134 4.724074 CACAACTGGTGGCATAAATGAT 57.276 40.909 0.00 0.00 44.04 2.45
134 135 5.833406 CACAACTGGTGGCATAAATGATA 57.167 39.130 0.00 0.00 44.04 2.15
135 136 6.206395 CACAACTGGTGGCATAAATGATAA 57.794 37.500 0.00 0.00 44.04 1.75
136 137 6.629128 CACAACTGGTGGCATAAATGATAAA 58.371 36.000 0.00 0.00 44.04 1.40
138 139 7.601886 CACAACTGGTGGCATAAATGATAAAAA 59.398 33.333 0.00 0.00 44.04 1.94
140 141 7.480760 ACTGGTGGCATAAATGATAAAAACT 57.519 32.000 0.00 0.00 0.00 2.66
142 143 7.397192 ACTGGTGGCATAAATGATAAAAACTCT 59.603 33.333 0.00 0.00 0.00 3.24
143 144 8.133024 TGGTGGCATAAATGATAAAAACTCTT 57.867 30.769 0.00 0.00 0.00 2.85
144 145 9.249053 TGGTGGCATAAATGATAAAAACTCTTA 57.751 29.630 0.00 0.00 0.00 2.10
145 146 9.516314 GGTGGCATAAATGATAAAAACTCTTAC 57.484 33.333 0.00 0.00 0.00 2.34
203 204 2.825861 AAAGCACATGGAAAGCTTGG 57.174 45.000 14.71 0.00 46.95 3.61
204 205 1.999648 AAGCACATGGAAAGCTTGGA 58.000 45.000 13.67 0.00 45.99 3.53
205 206 1.999648 AGCACATGGAAAGCTTGGAA 58.000 45.000 0.00 0.00 34.37 3.53
206 207 2.318908 AGCACATGGAAAGCTTGGAAA 58.681 42.857 0.00 0.00 34.37 3.13
207 208 2.699846 AGCACATGGAAAGCTTGGAAAA 59.300 40.909 0.00 0.00 34.37 2.29
208 209 3.325716 AGCACATGGAAAGCTTGGAAAAT 59.674 39.130 0.00 0.00 34.37 1.82
209 210 4.067192 GCACATGGAAAGCTTGGAAAATT 58.933 39.130 0.00 0.00 0.00 1.82
210 211 4.152938 GCACATGGAAAGCTTGGAAAATTC 59.847 41.667 0.00 0.00 0.00 2.17
228 229 9.739276 GGAAAATTCCCATCTTAAAAGGATTTT 57.261 29.630 0.43 0.00 45.36 1.82
245 246 9.492973 AAAGGATTTTTGTTCTATCAACAATGG 57.507 29.630 0.94 0.00 39.56 3.16
246 247 7.614494 AGGATTTTTGTTCTATCAACAATGGG 58.386 34.615 0.94 0.00 39.56 4.00
247 248 6.818142 GGATTTTTGTTCTATCAACAATGGGG 59.182 38.462 0.94 0.00 39.56 4.96
248 249 5.736951 TTTTGTTCTATCAACAATGGGGG 57.263 39.130 0.94 0.00 39.56 5.40
271 272 9.952030 GGGGGAAATCTGTATTTTTAATGAAAA 57.048 29.630 0.00 0.00 41.20 2.29
300 301 9.507329 AAAGAATTCAGCTTAGAAAGATACACA 57.493 29.630 8.44 0.00 0.00 3.72
301 302 9.507329 AAGAATTCAGCTTAGAAAGATACACAA 57.493 29.630 8.44 0.00 0.00 3.33
302 303 9.507329 AGAATTCAGCTTAGAAAGATACACAAA 57.493 29.630 8.44 0.00 0.00 2.83
304 305 9.899226 AATTCAGCTTAGAAAGATACACAAAAC 57.101 29.630 0.00 0.00 0.00 2.43
305 306 8.445275 TTCAGCTTAGAAAGATACACAAAACA 57.555 30.769 0.00 0.00 0.00 2.83
306 307 8.087982 TCAGCTTAGAAAGATACACAAAACAG 57.912 34.615 0.00 0.00 0.00 3.16
307 308 7.173218 TCAGCTTAGAAAGATACACAAAACAGG 59.827 37.037 0.00 0.00 0.00 4.00
308 309 6.998673 AGCTTAGAAAGATACACAAAACAGGT 59.001 34.615 0.00 0.00 0.00 4.00
309 310 7.502561 AGCTTAGAAAGATACACAAAACAGGTT 59.497 33.333 0.00 0.00 0.00 3.50
310 311 8.135529 GCTTAGAAAGATACACAAAACAGGTTT 58.864 33.333 0.00 0.00 0.00 3.27
314 315 9.185680 AGAAAGATACACAAAACAGGTTTTAGT 57.814 29.630 9.59 12.78 40.45 2.24
315 316 9.447040 GAAAGATACACAAAACAGGTTTTAGTC 57.553 33.333 9.59 4.92 40.45 2.59
316 317 7.506328 AGATACACAAAACAGGTTTTAGTCC 57.494 36.000 9.59 7.69 40.45 3.85
317 318 7.057894 AGATACACAAAACAGGTTTTAGTCCA 58.942 34.615 9.59 0.37 40.45 4.02
318 319 5.576447 ACACAAAACAGGTTTTAGTCCAG 57.424 39.130 9.59 0.43 40.45 3.86
319 320 5.014202 ACACAAAACAGGTTTTAGTCCAGT 58.986 37.500 9.59 0.99 40.45 4.00
320 321 5.105917 ACACAAAACAGGTTTTAGTCCAGTG 60.106 40.000 9.59 13.37 40.45 3.66
321 322 4.401202 ACAAAACAGGTTTTAGTCCAGTGG 59.599 41.667 1.40 1.40 40.45 4.00
322 323 2.951229 ACAGGTTTTAGTCCAGTGGG 57.049 50.000 9.92 0.00 0.00 4.61
323 324 1.202891 ACAGGTTTTAGTCCAGTGGGC 60.203 52.381 5.33 5.33 0.00 5.36
324 325 0.036306 AGGTTTTAGTCCAGTGGGCG 59.964 55.000 8.44 0.00 0.00 6.13
325 326 1.583495 GGTTTTAGTCCAGTGGGCGC 61.583 60.000 8.44 0.00 0.00 6.53
326 327 0.887387 GTTTTAGTCCAGTGGGCGCA 60.887 55.000 10.83 0.00 0.00 6.09
327 328 0.887387 TTTTAGTCCAGTGGGCGCAC 60.887 55.000 25.22 25.22 0.00 5.34
328 329 2.046009 TTTAGTCCAGTGGGCGCACA 62.046 55.000 32.29 9.15 0.00 4.57
329 330 2.046009 TTAGTCCAGTGGGCGCACAA 62.046 55.000 32.29 15.96 0.00 3.33
330 331 2.449031 TAGTCCAGTGGGCGCACAAG 62.449 60.000 32.29 23.71 0.00 3.16
331 332 3.872603 TCCAGTGGGCGCACAAGT 61.873 61.111 32.29 12.24 0.00 3.16
332 333 2.906897 CCAGTGGGCGCACAAGTT 60.907 61.111 32.29 11.87 0.00 2.66
333 334 2.332514 CAGTGGGCGCACAAGTTG 59.667 61.111 32.29 19.35 0.00 3.16
345 346 3.344904 CACAAGTTGCTTCAGTCCAAG 57.655 47.619 1.81 0.00 0.00 3.61
346 347 2.684881 CACAAGTTGCTTCAGTCCAAGT 59.315 45.455 1.81 0.00 0.00 3.16
347 348 2.684881 ACAAGTTGCTTCAGTCCAAGTG 59.315 45.455 1.81 0.00 0.00 3.16
348 349 1.972872 AGTTGCTTCAGTCCAAGTGG 58.027 50.000 0.00 0.00 0.00 4.00
349 350 1.212935 AGTTGCTTCAGTCCAAGTGGT 59.787 47.619 0.00 0.00 36.34 4.16
350 351 1.334869 GTTGCTTCAGTCCAAGTGGTG 59.665 52.381 0.00 0.00 36.34 4.17
351 352 0.836606 TGCTTCAGTCCAAGTGGTGA 59.163 50.000 0.00 0.00 36.34 4.02
352 353 1.230324 GCTTCAGTCCAAGTGGTGAC 58.770 55.000 0.00 0.00 36.34 3.67
353 354 1.502231 CTTCAGTCCAAGTGGTGACG 58.498 55.000 0.00 0.00 36.61 4.35
354 355 0.105964 TTCAGTCCAAGTGGTGACGG 59.894 55.000 0.00 0.00 36.61 4.79
355 356 1.301716 CAGTCCAAGTGGTGACGGG 60.302 63.158 0.00 0.00 36.61 5.28
356 357 1.764854 AGTCCAAGTGGTGACGGGT 60.765 57.895 0.00 0.00 36.61 5.28
357 358 1.147600 GTCCAAGTGGTGACGGGTT 59.852 57.895 0.00 0.00 36.34 4.11
358 359 0.883370 GTCCAAGTGGTGACGGGTTC 60.883 60.000 0.00 0.00 36.34 3.62
359 360 1.052124 TCCAAGTGGTGACGGGTTCT 61.052 55.000 0.00 0.00 36.34 3.01
360 361 0.179029 CCAAGTGGTGACGGGTTCTT 60.179 55.000 0.00 0.00 0.00 2.52
361 362 1.675552 CAAGTGGTGACGGGTTCTTT 58.324 50.000 0.00 0.00 0.00 2.52
362 363 1.333619 CAAGTGGTGACGGGTTCTTTG 59.666 52.381 0.00 0.00 0.00 2.77
363 364 0.179029 AGTGGTGACGGGTTCTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
364 365 0.464916 GTGGTGACGGGTTCTTTGGT 60.465 55.000 0.00 0.00 0.00 3.67
365 366 0.256464 TGGTGACGGGTTCTTTGGTT 59.744 50.000 0.00 0.00 0.00 3.67
366 367 1.489649 TGGTGACGGGTTCTTTGGTTA 59.510 47.619 0.00 0.00 0.00 2.85
367 368 2.148768 GGTGACGGGTTCTTTGGTTAG 58.851 52.381 0.00 0.00 0.00 2.34
368 369 2.224354 GGTGACGGGTTCTTTGGTTAGA 60.224 50.000 0.00 0.00 0.00 2.10
369 370 3.064931 GTGACGGGTTCTTTGGTTAGAG 58.935 50.000 0.00 0.00 0.00 2.43
370 371 2.701951 TGACGGGTTCTTTGGTTAGAGT 59.298 45.455 0.00 0.00 0.00 3.24
371 372 3.243975 TGACGGGTTCTTTGGTTAGAGTC 60.244 47.826 0.00 0.00 0.00 3.36
372 373 2.038164 ACGGGTTCTTTGGTTAGAGTCC 59.962 50.000 0.00 0.00 0.00 3.85
373 374 2.614734 CGGGTTCTTTGGTTAGAGTCCC 60.615 54.545 0.00 0.00 37.07 4.46
374 375 2.290768 GGGTTCTTTGGTTAGAGTCCCC 60.291 54.545 0.00 0.00 35.73 4.81
375 376 2.643304 GGTTCTTTGGTTAGAGTCCCCT 59.357 50.000 0.00 0.00 0.00 4.79
376 377 3.559384 GGTTCTTTGGTTAGAGTCCCCTG 60.559 52.174 0.00 0.00 0.00 4.45
377 378 2.266279 TCTTTGGTTAGAGTCCCCTGG 58.734 52.381 0.00 0.00 0.00 4.45
378 379 1.282157 CTTTGGTTAGAGTCCCCTGGG 59.718 57.143 5.50 5.50 0.00 4.45
379 380 0.494551 TTGGTTAGAGTCCCCTGGGA 59.505 55.000 16.20 3.95 42.90 4.37
445 446 6.469782 AAAAATGATTCACAGTGAACACCT 57.530 33.333 18.49 2.26 39.45 4.00
446 447 5.695851 AAATGATTCACAGTGAACACCTC 57.304 39.130 18.49 12.19 39.45 3.85
447 448 3.126001 TGATTCACAGTGAACACCTCC 57.874 47.619 18.49 4.78 39.45 4.30
448 449 2.437651 TGATTCACAGTGAACACCTCCA 59.562 45.455 18.49 7.08 39.45 3.86
449 450 2.620251 TTCACAGTGAACACCTCCAG 57.380 50.000 12.24 0.00 30.26 3.86
450 451 0.106708 TCACAGTGAACACCTCCAGC 59.893 55.000 0.00 0.00 0.00 4.85
451 452 0.107456 CACAGTGAACACCTCCAGCT 59.893 55.000 0.00 0.00 0.00 4.24
452 453 0.107456 ACAGTGAACACCTCCAGCTG 59.893 55.000 6.78 6.78 0.00 4.24
453 454 0.394192 CAGTGAACACCTCCAGCTGA 59.606 55.000 17.39 0.00 0.00 4.26
454 455 1.002888 CAGTGAACACCTCCAGCTGAT 59.997 52.381 17.39 0.00 0.00 2.90
455 456 1.277557 AGTGAACACCTCCAGCTGATC 59.722 52.381 17.39 2.38 0.00 2.92
456 457 1.277557 GTGAACACCTCCAGCTGATCT 59.722 52.381 17.39 0.00 0.00 2.75
457 458 2.497675 GTGAACACCTCCAGCTGATCTA 59.502 50.000 17.39 0.00 0.00 1.98
458 459 2.497675 TGAACACCTCCAGCTGATCTAC 59.502 50.000 17.39 0.00 0.00 2.59
459 460 2.238084 ACACCTCCAGCTGATCTACA 57.762 50.000 17.39 0.00 0.00 2.74
460 461 2.756907 ACACCTCCAGCTGATCTACAT 58.243 47.619 17.39 0.00 0.00 2.29
461 462 2.433604 ACACCTCCAGCTGATCTACATG 59.566 50.000 17.39 6.50 0.00 3.21
462 463 2.045524 ACCTCCAGCTGATCTACATGG 58.954 52.381 17.39 7.41 31.85 3.66
463 464 1.270732 CCTCCAGCTGATCTACATGGC 60.271 57.143 17.39 0.00 30.97 4.40
464 465 0.390492 TCCAGCTGATCTACATGGCG 59.610 55.000 17.39 0.00 30.97 5.69
465 466 0.105593 CCAGCTGATCTACATGGCGT 59.894 55.000 17.39 0.00 0.00 5.68
466 467 1.473965 CCAGCTGATCTACATGGCGTT 60.474 52.381 17.39 0.00 0.00 4.84
467 468 1.596260 CAGCTGATCTACATGGCGTTG 59.404 52.381 8.42 0.00 0.00 4.10
468 469 0.940126 GCTGATCTACATGGCGTTGG 59.060 55.000 0.00 0.00 0.00 3.77
469 470 0.940126 CTGATCTACATGGCGTTGGC 59.060 55.000 0.00 0.00 38.90 4.52
485 486 2.491152 GCCATGTGCCAACATCCG 59.509 61.111 0.00 0.00 45.50 4.18
486 487 2.491152 CCATGTGCCAACATCCGC 59.509 61.111 0.00 0.00 45.50 5.54
487 488 2.100797 CATGTGCCAACATCCGCG 59.899 61.111 0.00 0.00 45.50 6.46
488 489 3.814268 ATGTGCCAACATCCGCGC 61.814 61.111 0.00 0.00 43.85 6.86
527 528 2.682856 TCGCCAGATAGCATTTCCAAAC 59.317 45.455 0.00 0.00 0.00 2.93
535 536 6.869913 CAGATAGCATTTCCAAACACAAATGT 59.130 34.615 6.32 0.00 40.63 2.71
553 554 9.494479 CACAAATGTATATGTTCATTCTCACAC 57.506 33.333 0.00 0.00 33.86 3.82
554 555 8.677300 ACAAATGTATATGTTCATTCTCACACC 58.323 33.333 0.00 0.00 33.86 4.16
555 556 7.482654 AATGTATATGTTCATTCTCACACCG 57.517 36.000 0.00 0.00 29.74 4.94
556 557 5.356426 TGTATATGTTCATTCTCACACCGG 58.644 41.667 0.00 0.00 0.00 5.28
559 560 1.002624 TTCATTCTCACACCGGCCC 60.003 57.895 0.00 0.00 0.00 5.80
591 594 1.308783 GCAACACCTTCCCAGCTAGC 61.309 60.000 6.62 6.62 0.00 3.42
592 595 0.326264 CAACACCTTCCCAGCTAGCT 59.674 55.000 12.68 12.68 0.00 3.32
593 596 1.555075 CAACACCTTCCCAGCTAGCTA 59.445 52.381 18.86 0.00 0.00 3.32
594 597 1.490574 ACACCTTCCCAGCTAGCTAG 58.509 55.000 18.86 16.84 0.00 3.42
645 648 5.221864 ACCATTCCCTCTCGTCTTAAAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
661 664 8.802267 TCTTAAAGTTTGTTAGCTATGCCATTT 58.198 29.630 0.00 0.00 0.00 2.32
662 665 8.980143 TTAAAGTTTGTTAGCTATGCCATTTC 57.020 30.769 0.00 0.00 0.00 2.17
663 666 5.582689 AGTTTGTTAGCTATGCCATTTCC 57.417 39.130 0.00 0.00 0.00 3.13
704 707 8.704234 CATGCTTTCTATCTAACTAATTCGACC 58.296 37.037 0.00 0.00 0.00 4.79
729 732 2.745037 GGCCGGTCACTGTGGTAA 59.255 61.111 0.00 0.00 0.00 2.85
730 733 1.375523 GGCCGGTCACTGTGGTAAG 60.376 63.158 0.00 0.00 0.00 2.34
731 734 2.033194 GCCGGTCACTGTGGTAAGC 61.033 63.158 8.11 3.23 0.00 3.09
732 735 1.369692 CCGGTCACTGTGGTAAGCA 59.630 57.895 8.11 0.00 0.00 3.91
733 736 0.670546 CCGGTCACTGTGGTAAGCAG 60.671 60.000 8.11 0.00 39.67 4.24
734 737 1.291877 CGGTCACTGTGGTAAGCAGC 61.292 60.000 8.11 0.00 37.47 5.25
736 739 1.593196 GTCACTGTGGTAAGCAGCAA 58.407 50.000 8.11 0.00 37.47 3.91
738 741 2.160417 GTCACTGTGGTAAGCAGCAATC 59.840 50.000 8.11 0.00 37.47 2.67
739 742 2.038952 TCACTGTGGTAAGCAGCAATCT 59.961 45.455 8.11 0.00 37.47 2.40
740 743 2.417933 CACTGTGGTAAGCAGCAATCTC 59.582 50.000 0.00 0.00 37.47 2.75
744 747 3.253188 TGTGGTAAGCAGCAATCTCAAAC 59.747 43.478 0.00 0.00 33.05 2.93
747 750 4.937620 TGGTAAGCAGCAATCTCAAACTAG 59.062 41.667 0.00 0.00 0.00 2.57
844 887 1.650912 CTAGATTGCCGGCATGCAC 59.349 57.895 33.25 20.65 41.88 4.57
1014 1107 2.624838 CACCACCATGTTTCAAGAGCTT 59.375 45.455 0.00 0.00 0.00 3.74
1035 1128 4.912317 TGTAGTCCTAGCGATCCTCTAT 57.088 45.455 0.00 0.00 0.00 1.98
1059 1152 0.607217 TTCTCCACTACCTCACGCGA 60.607 55.000 15.93 0.00 0.00 5.87
1078 1171 0.546747 AACCATCCTCCGGACCAAGA 60.547 55.000 0.00 0.00 32.98 3.02
1905 2020 4.866682 AGCTCTACTTAACGTACGTACC 57.133 45.455 23.12 2.84 0.00 3.34
1906 2021 4.253685 AGCTCTACTTAACGTACGTACCA 58.746 43.478 23.12 7.27 0.00 3.25
1907 2022 4.331168 AGCTCTACTTAACGTACGTACCAG 59.669 45.833 23.12 18.75 0.00 4.00
1909 2024 5.163854 GCTCTACTTAACGTACGTACCAGAA 60.164 44.000 23.12 9.92 0.00 3.02
1951 2072 0.876399 TGCATGCACTCATCACACAC 59.124 50.000 18.46 0.00 0.00 3.82
1957 2084 0.778223 CACTCATCACACACGACACG 59.222 55.000 0.00 0.00 0.00 4.49
1973 2100 2.202046 CGTGACACGTTCATGCGC 60.202 61.111 19.77 0.00 36.32 6.09
1975 2102 2.660224 TGACACGTTCATGCGCGT 60.660 55.556 8.43 0.00 42.45 6.01
2138 2302 3.636313 GAATCCGACGTCCCGCACA 62.636 63.158 10.58 0.00 0.00 4.57
2182 2346 2.125512 GAGACGTTCCGCCTGCAT 60.126 61.111 0.00 0.00 0.00 3.96
2703 2874 3.607741 CTGCAGAATGAACTCATGGACT 58.392 45.455 8.42 0.00 39.69 3.85
2704 2875 3.603532 TGCAGAATGAACTCATGGACTC 58.396 45.455 0.00 0.00 39.69 3.36
2706 2877 4.005650 GCAGAATGAACTCATGGACTCAA 58.994 43.478 0.00 0.00 39.69 3.02
2707 2878 4.456911 GCAGAATGAACTCATGGACTCAAA 59.543 41.667 0.00 0.00 39.69 2.69
2708 2879 5.618640 GCAGAATGAACTCATGGACTCAAAC 60.619 44.000 0.00 0.00 39.69 2.93
2709 2880 5.006386 AGAATGAACTCATGGACTCAAACC 58.994 41.667 0.00 0.00 36.56 3.27
2710 2881 2.766313 TGAACTCATGGACTCAAACCG 58.234 47.619 0.00 0.00 0.00 4.44
2711 2882 2.104111 TGAACTCATGGACTCAAACCGT 59.896 45.455 0.00 0.00 0.00 4.83
2712 2883 3.322541 TGAACTCATGGACTCAAACCGTA 59.677 43.478 0.00 0.00 0.00 4.02
2713 2884 4.020573 TGAACTCATGGACTCAAACCGTAT 60.021 41.667 0.00 0.00 0.00 3.06
2716 2887 3.006940 TCATGGACTCAAACCGTATTGC 58.993 45.455 0.00 0.00 0.00 3.56
2717 2888 2.851263 TGGACTCAAACCGTATTGCT 57.149 45.000 0.00 0.00 0.00 3.91
2718 2889 2.422597 TGGACTCAAACCGTATTGCTG 58.577 47.619 0.00 0.00 0.00 4.41
2720 2891 2.673368 GGACTCAAACCGTATTGCTGAG 59.327 50.000 0.00 0.00 39.53 3.35
2721 2892 2.673368 GACTCAAACCGTATTGCTGAGG 59.327 50.000 0.00 0.00 38.25 3.86
2722 2893 2.009774 CTCAAACCGTATTGCTGAGGG 58.990 52.381 0.00 0.00 31.77 4.30
2723 2894 0.451783 CAAACCGTATTGCTGAGGGC 59.548 55.000 0.00 0.00 42.22 5.19
2734 2905 2.181954 GCTGAGGGCATCTCCAATAG 57.818 55.000 0.00 0.00 41.76 1.73
2735 2906 1.419387 GCTGAGGGCATCTCCAATAGT 59.581 52.381 0.00 0.00 41.76 2.12
2738 2909 2.846206 TGAGGGCATCTCCAATAGTTGT 59.154 45.455 0.00 0.00 41.76 3.32
2739 2910 4.037222 TGAGGGCATCTCCAATAGTTGTA 58.963 43.478 0.00 0.00 41.76 2.41
2740 2911 4.660303 TGAGGGCATCTCCAATAGTTGTAT 59.340 41.667 0.00 0.00 41.76 2.29
2741 2912 5.221722 TGAGGGCATCTCCAATAGTTGTATC 60.222 44.000 0.00 0.00 41.76 2.24
2744 2915 5.413833 GGGCATCTCCAATAGTTGTATCATG 59.586 44.000 0.00 0.00 36.21 3.07
2745 2916 6.000219 GGCATCTCCAATAGTTGTATCATGT 59.000 40.000 0.00 0.00 34.01 3.21
2746 2917 7.161404 GGCATCTCCAATAGTTGTATCATGTA 58.839 38.462 0.00 0.00 34.01 2.29
2747 2918 7.118390 GGCATCTCCAATAGTTGTATCATGTAC 59.882 40.741 0.00 0.00 34.01 2.90
2748 2919 7.148738 GCATCTCCAATAGTTGTATCATGTACG 60.149 40.741 0.00 0.00 0.00 3.67
2749 2920 7.576861 TCTCCAATAGTTGTATCATGTACGA 57.423 36.000 0.00 0.00 0.00 3.43
2750 2921 8.002984 TCTCCAATAGTTGTATCATGTACGAA 57.997 34.615 0.00 0.00 0.00 3.85
2751 2922 8.638873 TCTCCAATAGTTGTATCATGTACGAAT 58.361 33.333 0.00 0.00 0.00 3.34
2752 2923 9.908152 CTCCAATAGTTGTATCATGTACGAATA 57.092 33.333 0.00 0.00 0.00 1.75
2758 2929 8.365399 AGTTGTATCATGTACGAATAACCATG 57.635 34.615 0.00 0.00 36.80 3.66
2759 2930 8.201464 AGTTGTATCATGTACGAATAACCATGA 58.799 33.333 0.00 3.91 45.40 3.07
2761 2932 8.757164 TGTATCATGTACGAATAACCATGATC 57.243 34.615 15.06 9.32 46.68 2.92
2762 2933 6.951256 ATCATGTACGAATAACCATGATCG 57.049 37.500 7.88 0.00 46.68 3.69
2763 2934 6.079424 TCATGTACGAATAACCATGATCGA 57.921 37.500 0.00 0.00 38.90 3.59
2764 2935 6.687604 TCATGTACGAATAACCATGATCGAT 58.312 36.000 0.00 0.00 38.90 3.59
2765 2936 6.586082 TCATGTACGAATAACCATGATCGATG 59.414 38.462 0.54 0.00 38.90 3.84
2773 2944 1.376543 CCATGATCGATGGCTATGGC 58.623 55.000 0.54 0.00 45.58 4.40
2774 2945 1.004595 CATGATCGATGGCTATGGCG 58.995 55.000 0.54 0.00 39.81 5.69
2775 2946 0.742281 ATGATCGATGGCTATGGCGC 60.742 55.000 0.54 0.00 39.81 6.53
2776 2947 2.433145 ATCGATGGCTATGGCGCG 60.433 61.111 0.00 0.00 39.81 6.86
2777 2948 3.939837 ATCGATGGCTATGGCGCGG 62.940 63.158 8.83 0.00 39.81 6.46
2779 2950 4.996434 GATGGCTATGGCGCGGCT 62.996 66.667 33.23 20.43 39.81 5.52
2783 2954 3.643978 GCTATGGCGCGGCTTGAG 61.644 66.667 33.23 25.34 0.00 3.02
2784 2955 2.202932 CTATGGCGCGGCTTGAGT 60.203 61.111 33.23 15.79 0.00 3.41
2785 2956 2.202878 TATGGCGCGGCTTGAGTC 60.203 61.111 33.23 0.11 0.00 3.36
2786 2957 3.733344 TATGGCGCGGCTTGAGTCC 62.733 63.158 33.23 11.30 0.00 3.85
2789 2960 3.127533 GCGCGGCTTGAGTCCAAT 61.128 61.111 8.83 0.00 0.00 3.16
2790 2961 2.787249 CGCGGCTTGAGTCCAATG 59.213 61.111 0.00 0.00 0.00 2.82
2791 2962 1.741401 CGCGGCTTGAGTCCAATGA 60.741 57.895 0.00 0.00 0.00 2.57
2792 2963 1.091771 CGCGGCTTGAGTCCAATGAT 61.092 55.000 0.00 0.00 0.00 2.45
2793 2964 0.659957 GCGGCTTGAGTCCAATGATC 59.340 55.000 0.00 0.00 0.00 2.92
2794 2965 0.933097 CGGCTTGAGTCCAATGATCG 59.067 55.000 0.00 0.00 0.00 3.69
2795 2966 1.471501 CGGCTTGAGTCCAATGATCGA 60.472 52.381 0.00 0.00 0.00 3.59
2796 2967 1.936547 GGCTTGAGTCCAATGATCGAC 59.063 52.381 0.00 0.00 0.00 4.20
2797 2968 2.419297 GGCTTGAGTCCAATGATCGACT 60.419 50.000 1.14 1.14 42.02 4.18
2801 2972 2.722071 GAGTCCAATGATCGACTCGTC 58.278 52.381 11.25 0.00 43.97 4.20
2802 2973 2.092323 AGTCCAATGATCGACTCGTCA 58.908 47.619 0.00 2.65 34.15 4.35
2803 2974 2.690497 AGTCCAATGATCGACTCGTCAT 59.310 45.455 9.40 9.40 34.15 3.06
2804 2975 3.131223 AGTCCAATGATCGACTCGTCATT 59.869 43.478 16.76 16.76 43.75 2.57
2805 2976 3.865745 GTCCAATGATCGACTCGTCATTT 59.134 43.478 18.55 8.41 41.70 2.32
2806 2977 5.041287 GTCCAATGATCGACTCGTCATTTA 58.959 41.667 18.55 11.70 41.70 1.40
2807 2978 5.174035 GTCCAATGATCGACTCGTCATTTAG 59.826 44.000 18.55 14.99 41.70 1.85
2808 2979 5.043903 CCAATGATCGACTCGTCATTTAGT 58.956 41.667 18.55 4.49 41.70 2.24
2809 2980 5.174035 CCAATGATCGACTCGTCATTTAGTC 59.826 44.000 18.55 0.00 41.70 2.59
2810 2981 4.957759 TGATCGACTCGTCATTTAGTCA 57.042 40.909 0.00 0.00 41.83 3.41
2811 2982 4.909894 TGATCGACTCGTCATTTAGTCAG 58.090 43.478 0.00 0.00 41.83 3.51
2812 2983 4.634443 TGATCGACTCGTCATTTAGTCAGA 59.366 41.667 0.00 0.00 41.83 3.27
2813 2984 5.297029 TGATCGACTCGTCATTTAGTCAGAT 59.703 40.000 0.00 0.00 41.83 2.90
2814 2985 6.482308 TGATCGACTCGTCATTTAGTCAGATA 59.518 38.462 0.00 0.00 41.83 1.98
2815 2986 6.288426 TCGACTCGTCATTTAGTCAGATAG 57.712 41.667 0.00 0.00 41.83 2.08
2820 2991 8.734218 ACTCGTCATTTAGTCAGATAGTAGAA 57.266 34.615 0.00 0.00 0.00 2.10
2821 2992 9.175312 ACTCGTCATTTAGTCAGATAGTAGAAA 57.825 33.333 0.00 0.00 0.00 2.52
2823 2994 8.953313 TCGTCATTTAGTCAGATAGTAGAAACA 58.047 33.333 0.00 0.00 0.00 2.83
2824 2995 9.737427 CGTCATTTAGTCAGATAGTAGAAACAT 57.263 33.333 0.00 0.00 0.00 2.71
3110 3412 6.912051 GTGCATTATCACAAGCGAATTGATAA 59.088 34.615 12.48 12.48 43.14 1.75
3112 3414 7.431960 TGCATTATCACAAGCGAATTGATAAAC 59.568 33.333 13.50 10.67 42.57 2.01
3146 3453 7.223971 ACAAATCATCATTGAGCATAATGTTGC 59.776 33.333 14.35 0.00 43.09 4.17
3209 3758 9.521841 TTGACCACATATTTGACTACCAAAATA 57.478 29.630 0.00 0.00 46.64 1.40
3269 3901 5.985530 CACAGAAAGGCTAATGATATCGTCA 59.014 40.000 0.00 0.00 42.06 4.35
3607 4570 6.876257 TGCTACAAAATTGGTGAAAACTTTGT 59.124 30.769 2.64 2.64 39.41 2.83
3608 4571 8.035394 TGCTACAAAATTGGTGAAAACTTTGTA 58.965 29.630 4.34 4.34 38.18 2.41
3609 4572 8.539674 GCTACAAAATTGGTGAAAACTTTGTAG 58.460 33.333 19.09 19.09 46.39 2.74
3610 4573 9.581099 CTACAAAATTGGTGAAAACTTTGTAGT 57.419 29.630 16.78 0.00 43.45 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.135189 TGCTTGCTCAAAAATACCATTAGATAT 57.865 29.630 0.00 0.00 0.00 1.63
23 24 8.518430 TGCTTGCTCAAAAATACCATTAGATA 57.482 30.769 0.00 0.00 0.00 1.98
27 28 7.122501 TGAGATGCTTGCTCAAAAATACCATTA 59.877 33.333 0.00 0.00 39.29 1.90
28 29 6.071221 TGAGATGCTTGCTCAAAAATACCATT 60.071 34.615 0.00 0.00 39.29 3.16
30 31 4.766373 TGAGATGCTTGCTCAAAAATACCA 59.234 37.500 0.00 0.00 39.29 3.25
32 33 5.702865 TGTGAGATGCTTGCTCAAAAATAC 58.297 37.500 0.00 0.00 43.39 1.89
35 36 3.884693 TCTGTGAGATGCTTGCTCAAAAA 59.115 39.130 0.00 0.00 43.39 1.94
36 37 3.479489 TCTGTGAGATGCTTGCTCAAAA 58.521 40.909 0.00 0.00 43.39 2.44
37 38 3.130280 TCTGTGAGATGCTTGCTCAAA 57.870 42.857 0.00 0.00 43.39 2.69
38 39 2.845363 TCTGTGAGATGCTTGCTCAA 57.155 45.000 0.00 0.00 43.39 3.02
39 40 2.737679 CGATCTGTGAGATGCTTGCTCA 60.738 50.000 0.00 0.00 39.90 4.26
40 41 1.859703 CGATCTGTGAGATGCTTGCTC 59.140 52.381 0.00 0.00 34.53 4.26
41 42 1.479730 TCGATCTGTGAGATGCTTGCT 59.520 47.619 0.00 0.00 34.53 3.91
42 43 1.931906 TCGATCTGTGAGATGCTTGC 58.068 50.000 0.00 0.00 34.53 4.01
43 44 2.801111 CCATCGATCTGTGAGATGCTTG 59.199 50.000 0.00 0.00 40.11 4.01
44 45 2.806019 GCCATCGATCTGTGAGATGCTT 60.806 50.000 0.00 0.00 40.11 3.91
45 46 1.270199 GCCATCGATCTGTGAGATGCT 60.270 52.381 0.00 0.00 40.11 3.79
46 47 1.146637 GCCATCGATCTGTGAGATGC 58.853 55.000 0.00 0.00 40.11 3.91
47 48 2.521105 TGCCATCGATCTGTGAGATG 57.479 50.000 0.00 0.00 40.86 2.90
49 50 3.548745 AAATGCCATCGATCTGTGAGA 57.451 42.857 0.00 0.00 0.00 3.27
50 51 4.095334 TCAAAAATGCCATCGATCTGTGAG 59.905 41.667 0.00 0.00 0.00 3.51
52 53 4.142534 ACTCAAAAATGCCATCGATCTGTG 60.143 41.667 0.00 0.00 0.00 3.66
53 54 4.012374 ACTCAAAAATGCCATCGATCTGT 58.988 39.130 0.00 0.00 0.00 3.41
54 55 4.627611 ACTCAAAAATGCCATCGATCTG 57.372 40.909 0.00 0.00 0.00 2.90
55 56 5.431765 ACTACTCAAAAATGCCATCGATCT 58.568 37.500 0.00 0.00 0.00 2.75
56 57 5.741388 ACTACTCAAAAATGCCATCGATC 57.259 39.130 0.00 0.00 0.00 3.69
57 58 5.647658 TCAACTACTCAAAAATGCCATCGAT 59.352 36.000 0.00 0.00 0.00 3.59
58 59 5.000591 TCAACTACTCAAAAATGCCATCGA 58.999 37.500 0.00 0.00 0.00 3.59
60 61 7.147976 AGTTTCAACTACTCAAAAATGCCATC 58.852 34.615 0.00 0.00 37.52 3.51
61 62 7.054491 AGTTTCAACTACTCAAAAATGCCAT 57.946 32.000 0.00 0.00 37.52 4.40
63 64 7.203218 AGAAGTTTCAACTACTCAAAAATGCC 58.797 34.615 0.00 0.00 38.57 4.40
64 65 9.730420 TTAGAAGTTTCAACTACTCAAAAATGC 57.270 29.630 0.00 0.00 38.57 3.56
69 70 9.607988 TGTCATTAGAAGTTTCAACTACTCAAA 57.392 29.630 0.00 0.00 38.57 2.69
70 71 9.607988 TTGTCATTAGAAGTTTCAACTACTCAA 57.392 29.630 0.00 0.00 38.57 3.02
71 72 9.607988 TTTGTCATTAGAAGTTTCAACTACTCA 57.392 29.630 0.00 0.00 38.57 3.41
76 77 8.956426 TCAGTTTTGTCATTAGAAGTTTCAACT 58.044 29.630 0.00 0.00 42.04 3.16
78 79 8.956426 ACTCAGTTTTGTCATTAGAAGTTTCAA 58.044 29.630 0.00 0.00 0.00 2.69
82 83 9.046296 CACTACTCAGTTTTGTCATTAGAAGTT 57.954 33.333 0.00 0.00 30.46 2.66
83 84 7.657761 CCACTACTCAGTTTTGTCATTAGAAGT 59.342 37.037 0.00 0.00 30.46 3.01
84 85 7.118390 CCCACTACTCAGTTTTGTCATTAGAAG 59.882 40.741 0.00 0.00 30.46 2.85
87 88 6.369065 GTCCCACTACTCAGTTTTGTCATTAG 59.631 42.308 0.00 0.00 30.46 1.73
88 89 6.183361 TGTCCCACTACTCAGTTTTGTCATTA 60.183 38.462 0.00 0.00 30.46 1.90
89 90 5.063880 GTCCCACTACTCAGTTTTGTCATT 58.936 41.667 0.00 0.00 30.46 2.57
90 91 4.102524 TGTCCCACTACTCAGTTTTGTCAT 59.897 41.667 0.00 0.00 30.46 3.06
91 92 3.452990 TGTCCCACTACTCAGTTTTGTCA 59.547 43.478 0.00 0.00 30.46 3.58
92 93 3.808174 GTGTCCCACTACTCAGTTTTGTC 59.192 47.826 0.00 0.00 30.46 3.18
93 94 3.199071 TGTGTCCCACTACTCAGTTTTGT 59.801 43.478 0.00 0.00 35.11 2.83
95 96 4.080526 AGTTGTGTCCCACTACTCAGTTTT 60.081 41.667 5.79 0.00 44.27 2.43
96 97 3.454812 AGTTGTGTCCCACTACTCAGTTT 59.545 43.478 5.79 0.00 44.27 2.66
97 98 3.039011 AGTTGTGTCCCACTACTCAGTT 58.961 45.455 5.79 0.00 44.27 3.16
98 99 2.365617 CAGTTGTGTCCCACTACTCAGT 59.634 50.000 8.20 0.00 44.27 3.41
99 100 2.289072 CCAGTTGTGTCCCACTACTCAG 60.289 54.545 8.20 1.33 44.27 3.35
100 101 1.691976 CCAGTTGTGTCCCACTACTCA 59.308 52.381 8.20 0.00 44.27 3.41
101 102 1.692519 ACCAGTTGTGTCCCACTACTC 59.307 52.381 8.20 0.00 44.27 2.59
105 106 1.531748 CCACCAGTTGTGTCCCACT 59.468 57.895 0.00 0.00 43.85 4.00
106 107 2.193536 GCCACCAGTTGTGTCCCAC 61.194 63.158 0.00 0.00 43.85 4.61
107 108 2.005606 ATGCCACCAGTTGTGTCCCA 62.006 55.000 0.00 0.00 43.85 4.37
108 109 0.037590 TATGCCACCAGTTGTGTCCC 59.962 55.000 0.00 0.00 43.85 4.46
109 110 1.904287 TTATGCCACCAGTTGTGTCC 58.096 50.000 0.00 0.00 43.85 4.02
110 111 3.505680 TCATTTATGCCACCAGTTGTGTC 59.494 43.478 0.00 0.00 43.85 3.67
112 113 4.724074 ATCATTTATGCCACCAGTTGTG 57.276 40.909 0.00 0.00 45.01 3.33
113 114 6.849085 TTTATCATTTATGCCACCAGTTGT 57.151 33.333 0.00 0.00 0.00 3.32
116 117 7.397192 AGAGTTTTTATCATTTATGCCACCAGT 59.603 33.333 0.00 0.00 0.00 4.00
118 119 7.716799 AGAGTTTTTATCATTTATGCCACCA 57.283 32.000 0.00 0.00 0.00 4.17
119 120 9.516314 GTAAGAGTTTTTATCATTTATGCCACC 57.484 33.333 0.00 0.00 0.00 4.61
182 183 3.134442 TCCAAGCTTTCCATGTGCTTTTT 59.866 39.130 0.00 0.00 43.47 1.94
183 184 2.699846 TCCAAGCTTTCCATGTGCTTTT 59.300 40.909 0.00 0.00 43.47 2.27
184 185 2.318908 TCCAAGCTTTCCATGTGCTTT 58.681 42.857 0.00 0.00 43.47 3.51
185 186 1.999648 TCCAAGCTTTCCATGTGCTT 58.000 45.000 0.00 6.65 46.38 3.91
186 187 1.999648 TTCCAAGCTTTCCATGTGCT 58.000 45.000 0.00 0.00 38.87 4.40
187 188 2.818130 TTTCCAAGCTTTCCATGTGC 57.182 45.000 0.00 0.00 0.00 4.57
188 189 4.692155 GGAATTTTCCAAGCTTTCCATGTG 59.308 41.667 0.00 0.00 46.76 3.21
189 190 4.898320 GGAATTTTCCAAGCTTTCCATGT 58.102 39.130 0.00 0.00 46.76 3.21
190 191 9.422864 AGATGGGAATTTTCCAAGCTTTCCATG 62.423 40.741 12.06 0.00 44.43 3.66
191 192 7.493678 AGATGGGAATTTTCCAAGCTTTCCAT 61.494 38.462 12.06 2.25 44.43 3.41
192 193 6.226831 AGATGGGAATTTTCCAAGCTTTCCA 61.227 40.000 12.06 0.00 44.43 3.53
193 194 4.223700 AGATGGGAATTTTCCAAGCTTTCC 59.776 41.667 11.31 0.00 44.43 3.13
194 195 5.411831 AGATGGGAATTTTCCAAGCTTTC 57.588 39.130 11.31 0.00 44.43 2.62
202 203 9.739276 AAAATCCTTTTAAGATGGGAATTTTCC 57.261 29.630 0.41 0.41 46.82 3.13
207 208 9.725019 GAACAAAAATCCTTTTAAGATGGGAAT 57.275 29.630 0.00 0.00 32.85 3.01
208 209 8.933653 AGAACAAAAATCCTTTTAAGATGGGAA 58.066 29.630 0.00 0.00 32.85 3.97
209 210 8.491045 AGAACAAAAATCCTTTTAAGATGGGA 57.509 30.769 0.00 0.00 32.85 4.37
219 220 9.492973 CCATTGTTGATAGAACAAAAATCCTTT 57.507 29.630 4.23 0.00 42.57 3.11
220 221 8.096414 CCCATTGTTGATAGAACAAAAATCCTT 58.904 33.333 4.23 0.00 42.57 3.36
221 222 7.310609 CCCCATTGTTGATAGAACAAAAATCCT 60.311 37.037 4.23 0.00 42.57 3.24
222 223 6.818142 CCCCATTGTTGATAGAACAAAAATCC 59.182 38.462 4.23 0.00 42.57 3.01
223 224 6.818142 CCCCCATTGTTGATAGAACAAAAATC 59.182 38.462 4.23 0.00 42.57 2.17
224 225 6.710278 CCCCCATTGTTGATAGAACAAAAAT 58.290 36.000 4.23 0.00 42.57 1.82
225 226 6.107901 CCCCCATTGTTGATAGAACAAAAA 57.892 37.500 4.23 0.00 42.57 1.94
226 227 5.736951 CCCCCATTGTTGATAGAACAAAA 57.263 39.130 4.23 0.00 42.57 2.44
245 246 9.952030 TTTTCATTAAAAATACAGATTTCCCCC 57.048 29.630 0.00 0.00 34.01 5.40
274 275 9.507329 TGTGTATCTTTCTAAGCTGAATTCTTT 57.493 29.630 7.05 1.80 0.00 2.52
275 276 9.507329 TTGTGTATCTTTCTAAGCTGAATTCTT 57.493 29.630 7.05 0.00 0.00 2.52
276 277 9.507329 TTTGTGTATCTTTCTAAGCTGAATTCT 57.493 29.630 7.05 0.00 0.00 2.40
278 279 9.899226 GTTTTGTGTATCTTTCTAAGCTGAATT 57.101 29.630 0.00 0.00 0.00 2.17
279 280 9.066892 TGTTTTGTGTATCTTTCTAAGCTGAAT 57.933 29.630 0.00 0.00 0.00 2.57
280 281 8.445275 TGTTTTGTGTATCTTTCTAAGCTGAA 57.555 30.769 0.00 0.00 0.00 3.02
281 282 7.173218 CCTGTTTTGTGTATCTTTCTAAGCTGA 59.827 37.037 0.00 0.00 0.00 4.26
282 283 7.041098 ACCTGTTTTGTGTATCTTTCTAAGCTG 60.041 37.037 0.00 0.00 0.00 4.24
283 284 6.998673 ACCTGTTTTGTGTATCTTTCTAAGCT 59.001 34.615 0.00 0.00 0.00 3.74
284 285 7.203255 ACCTGTTTTGTGTATCTTTCTAAGC 57.797 36.000 0.00 0.00 0.00 3.09
288 289 9.185680 ACTAAAACCTGTTTTGTGTATCTTTCT 57.814 29.630 16.20 0.00 42.18 2.52
289 290 9.447040 GACTAAAACCTGTTTTGTGTATCTTTC 57.553 33.333 16.20 2.02 42.18 2.62
290 291 8.410912 GGACTAAAACCTGTTTTGTGTATCTTT 58.589 33.333 16.20 0.00 42.18 2.52
291 292 7.558444 TGGACTAAAACCTGTTTTGTGTATCTT 59.442 33.333 16.20 0.00 42.18 2.40
292 293 7.057894 TGGACTAAAACCTGTTTTGTGTATCT 58.942 34.615 16.20 0.00 42.18 1.98
293 294 7.012989 ACTGGACTAAAACCTGTTTTGTGTATC 59.987 37.037 16.20 11.09 42.18 2.24
294 295 6.831868 ACTGGACTAAAACCTGTTTTGTGTAT 59.168 34.615 16.20 0.08 42.18 2.29
295 296 6.094325 CACTGGACTAAAACCTGTTTTGTGTA 59.906 38.462 16.20 0.00 42.18 2.90
296 297 5.014202 ACTGGACTAAAACCTGTTTTGTGT 58.986 37.500 16.20 14.08 42.18 3.72
297 298 5.339990 CACTGGACTAAAACCTGTTTTGTG 58.660 41.667 16.20 11.03 42.18 3.33
298 299 4.401202 CCACTGGACTAAAACCTGTTTTGT 59.599 41.667 16.20 12.19 42.18 2.83
299 300 4.202111 CCCACTGGACTAAAACCTGTTTTG 60.202 45.833 16.20 9.69 42.18 2.44
300 301 3.958147 CCCACTGGACTAAAACCTGTTTT 59.042 43.478 12.20 12.20 44.16 2.43
301 302 3.562182 CCCACTGGACTAAAACCTGTTT 58.438 45.455 0.00 0.00 37.45 2.83
302 303 2.751816 GCCCACTGGACTAAAACCTGTT 60.752 50.000 0.00 0.00 37.45 3.16
303 304 1.202891 GCCCACTGGACTAAAACCTGT 60.203 52.381 0.00 0.00 39.50 4.00
304 305 1.534729 GCCCACTGGACTAAAACCTG 58.465 55.000 0.00 0.00 0.00 4.00
305 306 0.036306 CGCCCACTGGACTAAAACCT 59.964 55.000 0.00 0.00 0.00 3.50
306 307 1.583495 GCGCCCACTGGACTAAAACC 61.583 60.000 0.00 0.00 0.00 3.27
307 308 0.887387 TGCGCCCACTGGACTAAAAC 60.887 55.000 4.18 0.00 0.00 2.43
308 309 0.887387 GTGCGCCCACTGGACTAAAA 60.887 55.000 4.18 0.00 38.93 1.52
309 310 1.302192 GTGCGCCCACTGGACTAAA 60.302 57.895 4.18 0.00 38.93 1.85
310 311 2.046009 TTGTGCGCCCACTGGACTAA 62.046 55.000 4.18 0.00 42.54 2.24
311 312 2.449031 CTTGTGCGCCCACTGGACTA 62.449 60.000 4.18 0.00 42.54 2.59
312 313 3.832237 CTTGTGCGCCCACTGGACT 62.832 63.158 4.18 0.00 42.54 3.85
313 314 3.357079 CTTGTGCGCCCACTGGAC 61.357 66.667 4.18 0.00 42.54 4.02
314 315 3.414136 AACTTGTGCGCCCACTGGA 62.414 57.895 4.18 0.00 42.54 3.86
315 316 2.906897 AACTTGTGCGCCCACTGG 60.907 61.111 4.18 0.00 42.54 4.00
316 317 2.332514 CAACTTGTGCGCCCACTG 59.667 61.111 4.18 0.00 42.54 3.66
317 318 3.595758 GCAACTTGTGCGCCCACT 61.596 61.111 4.18 0.00 45.10 4.00
325 326 2.684881 ACTTGGACTGAAGCAACTTGTG 59.315 45.455 0.00 0.00 0.00 3.33
326 327 2.684881 CACTTGGACTGAAGCAACTTGT 59.315 45.455 0.00 0.00 0.00 3.16
327 328 2.033801 CCACTTGGACTGAAGCAACTTG 59.966 50.000 0.00 0.00 37.39 3.16
328 329 2.301346 CCACTTGGACTGAAGCAACTT 58.699 47.619 0.00 0.00 37.39 2.66
329 330 1.212935 ACCACTTGGACTGAAGCAACT 59.787 47.619 1.14 0.00 38.94 3.16
330 331 1.334869 CACCACTTGGACTGAAGCAAC 59.665 52.381 1.14 0.00 38.94 4.17
331 332 1.211703 TCACCACTTGGACTGAAGCAA 59.788 47.619 1.14 0.00 38.94 3.91
332 333 0.836606 TCACCACTTGGACTGAAGCA 59.163 50.000 1.14 0.00 38.94 3.91
333 334 1.230324 GTCACCACTTGGACTGAAGC 58.770 55.000 1.14 0.00 38.94 3.86
334 335 1.502231 CGTCACCACTTGGACTGAAG 58.498 55.000 1.14 0.00 38.94 3.02
335 336 0.105964 CCGTCACCACTTGGACTGAA 59.894 55.000 1.14 0.00 38.94 3.02
336 337 1.745890 CCGTCACCACTTGGACTGA 59.254 57.895 1.14 0.00 38.94 3.41
337 338 1.301716 CCCGTCACCACTTGGACTG 60.302 63.158 1.14 0.00 38.94 3.51
338 339 1.342672 AACCCGTCACCACTTGGACT 61.343 55.000 1.14 0.00 38.94 3.85
339 340 0.883370 GAACCCGTCACCACTTGGAC 60.883 60.000 1.14 0.00 38.94 4.02
340 341 1.052124 AGAACCCGTCACCACTTGGA 61.052 55.000 1.14 0.00 38.94 3.53
341 342 0.179029 AAGAACCCGTCACCACTTGG 60.179 55.000 0.00 0.00 42.17 3.61
342 343 1.333619 CAAAGAACCCGTCACCACTTG 59.666 52.381 0.00 0.00 0.00 3.16
343 344 1.675552 CAAAGAACCCGTCACCACTT 58.324 50.000 0.00 0.00 0.00 3.16
344 345 0.179029 CCAAAGAACCCGTCACCACT 60.179 55.000 0.00 0.00 0.00 4.00
345 346 0.464916 ACCAAAGAACCCGTCACCAC 60.465 55.000 0.00 0.00 0.00 4.16
346 347 0.256464 AACCAAAGAACCCGTCACCA 59.744 50.000 0.00 0.00 0.00 4.17
347 348 2.148768 CTAACCAAAGAACCCGTCACC 58.851 52.381 0.00 0.00 0.00 4.02
348 349 3.064931 CTCTAACCAAAGAACCCGTCAC 58.935 50.000 0.00 0.00 0.00 3.67
349 350 2.701951 ACTCTAACCAAAGAACCCGTCA 59.298 45.455 0.00 0.00 0.00 4.35
350 351 3.324117 GACTCTAACCAAAGAACCCGTC 58.676 50.000 0.00 0.00 0.00 4.79
351 352 2.038164 GGACTCTAACCAAAGAACCCGT 59.962 50.000 0.00 0.00 0.00 5.28
352 353 2.614734 GGGACTCTAACCAAAGAACCCG 60.615 54.545 0.00 0.00 34.61 5.28
353 354 2.290768 GGGGACTCTAACCAAAGAACCC 60.291 54.545 0.00 0.00 39.49 4.11
354 355 2.643304 AGGGGACTCTAACCAAAGAACC 59.357 50.000 0.00 0.00 32.90 3.62
355 356 3.559384 CCAGGGGACTCTAACCAAAGAAC 60.559 52.174 0.00 0.00 40.21 3.01
356 357 2.642807 CCAGGGGACTCTAACCAAAGAA 59.357 50.000 0.00 0.00 40.21 2.52
357 358 2.266279 CCAGGGGACTCTAACCAAAGA 58.734 52.381 0.00 0.00 40.21 2.52
358 359 1.282157 CCCAGGGGACTCTAACCAAAG 59.718 57.143 0.00 0.00 40.21 2.77
359 360 1.132332 TCCCAGGGGACTCTAACCAAA 60.132 52.381 5.33 0.00 40.21 3.28
360 361 0.494551 TCCCAGGGGACTCTAACCAA 59.505 55.000 5.33 0.00 40.21 3.67
361 362 0.494551 TTCCCAGGGGACTCTAACCA 59.505 55.000 6.55 0.00 45.11 3.67
362 363 0.910338 GTTCCCAGGGGACTCTAACC 59.090 60.000 10.21 0.00 45.11 2.85
363 364 1.652947 TGTTCCCAGGGGACTCTAAC 58.347 55.000 18.89 8.43 45.11 2.34
364 365 2.661176 ATGTTCCCAGGGGACTCTAA 57.339 50.000 18.89 0.00 45.11 2.10
365 366 2.661176 AATGTTCCCAGGGGACTCTA 57.339 50.000 18.89 0.00 45.11 2.43
366 367 1.760405 AAATGTTCCCAGGGGACTCT 58.240 50.000 18.89 2.46 45.11 3.24
367 368 2.604912 AAAATGTTCCCAGGGGACTC 57.395 50.000 18.89 9.81 45.11 3.36
422 423 6.461509 GGAGGTGTTCACTGTGAATCATTTTT 60.462 38.462 24.44 8.54 38.79 1.94
423 424 5.010012 GGAGGTGTTCACTGTGAATCATTTT 59.990 40.000 24.44 13.39 38.79 1.82
424 425 4.520492 GGAGGTGTTCACTGTGAATCATTT 59.480 41.667 24.44 15.26 38.79 2.32
425 426 4.074970 GGAGGTGTTCACTGTGAATCATT 58.925 43.478 24.44 15.53 38.79 2.57
426 427 3.072915 TGGAGGTGTTCACTGTGAATCAT 59.927 43.478 24.44 17.83 38.79 2.45
427 428 2.437651 TGGAGGTGTTCACTGTGAATCA 59.562 45.455 24.44 19.79 38.79 2.57
428 429 3.070018 CTGGAGGTGTTCACTGTGAATC 58.930 50.000 24.44 17.37 38.79 2.52
429 430 2.811873 GCTGGAGGTGTTCACTGTGAAT 60.812 50.000 24.44 10.05 38.79 2.57
430 431 1.475034 GCTGGAGGTGTTCACTGTGAA 60.475 52.381 18.69 18.69 33.32 3.18
431 432 0.106708 GCTGGAGGTGTTCACTGTGA 59.893 55.000 6.36 6.36 0.00 3.58
432 433 0.107456 AGCTGGAGGTGTTCACTGTG 59.893 55.000 0.17 0.17 0.00 3.66
433 434 0.107456 CAGCTGGAGGTGTTCACTGT 59.893 55.000 5.57 0.00 38.61 3.55
434 435 0.394192 TCAGCTGGAGGTGTTCACTG 59.606 55.000 15.13 0.00 43.46 3.66
435 436 1.277557 GATCAGCTGGAGGTGTTCACT 59.722 52.381 15.13 0.00 43.46 3.41
436 437 1.277557 AGATCAGCTGGAGGTGTTCAC 59.722 52.381 15.13 0.00 41.89 3.18
437 438 1.649321 AGATCAGCTGGAGGTGTTCA 58.351 50.000 15.13 0.00 41.89 3.18
438 439 2.497675 TGTAGATCAGCTGGAGGTGTTC 59.502 50.000 15.13 7.17 43.46 3.18
439 440 2.540383 TGTAGATCAGCTGGAGGTGTT 58.460 47.619 15.13 0.00 43.46 3.32
440 441 2.238084 TGTAGATCAGCTGGAGGTGT 57.762 50.000 15.13 0.00 43.46 4.16
441 442 2.224233 CCATGTAGATCAGCTGGAGGTG 60.224 54.545 15.13 0.00 44.29 4.00
442 443 2.045524 CCATGTAGATCAGCTGGAGGT 58.954 52.381 15.13 0.00 30.12 3.85
443 444 1.270732 GCCATGTAGATCAGCTGGAGG 60.271 57.143 15.13 5.69 30.12 4.30
444 445 1.604947 CGCCATGTAGATCAGCTGGAG 60.605 57.143 15.13 0.00 30.12 3.86
445 446 0.390492 CGCCATGTAGATCAGCTGGA 59.610 55.000 15.13 0.57 30.12 3.86
446 447 0.105593 ACGCCATGTAGATCAGCTGG 59.894 55.000 15.13 0.00 31.39 4.85
447 448 1.596260 CAACGCCATGTAGATCAGCTG 59.404 52.381 7.63 7.63 0.00 4.24
448 449 1.473965 CCAACGCCATGTAGATCAGCT 60.474 52.381 0.00 0.00 0.00 4.24
449 450 0.940126 CCAACGCCATGTAGATCAGC 59.060 55.000 0.00 0.00 0.00 4.26
450 451 0.940126 GCCAACGCCATGTAGATCAG 59.060 55.000 0.00 0.00 0.00 2.90
451 452 3.079131 GCCAACGCCATGTAGATCA 57.921 52.632 0.00 0.00 0.00 2.92
468 469 2.491152 CGGATGTTGGCACATGGC 59.509 61.111 7.19 0.00 44.22 4.40
469 470 2.491152 GCGGATGTTGGCACATGG 59.509 61.111 7.19 1.94 44.22 3.66
470 471 2.100797 CGCGGATGTTGGCACATG 59.899 61.111 0.00 0.00 44.22 3.21
499 500 1.951631 GCTATCTGGCGAACGCTCC 60.952 63.158 18.14 4.03 41.60 4.70
510 511 6.869913 ACATTTGTGTTTGGAAATGCTATCTG 59.130 34.615 0.00 0.00 41.37 2.90
511 512 6.996509 ACATTTGTGTTTGGAAATGCTATCT 58.003 32.000 0.00 0.00 41.37 1.98
527 528 9.494479 GTGTGAGAATGAACATATACATTTGTG 57.506 33.333 0.00 0.00 36.94 3.33
535 536 4.377021 GCCGGTGTGAGAATGAACATATA 58.623 43.478 1.90 0.00 0.00 0.86
559 560 4.439472 GTTGCTAACGGCCGTGCG 62.439 66.667 34.95 25.87 40.92 5.34
591 594 3.871594 CGCCCAAGATTGTAAAGACCTAG 59.128 47.826 0.00 0.00 0.00 3.02
592 595 3.262405 ACGCCCAAGATTGTAAAGACCTA 59.738 43.478 0.00 0.00 0.00 3.08
593 596 2.039879 ACGCCCAAGATTGTAAAGACCT 59.960 45.455 0.00 0.00 0.00 3.85
594 597 2.418976 GACGCCCAAGATTGTAAAGACC 59.581 50.000 0.00 0.00 0.00 3.85
645 648 4.502105 TGAGGAAATGGCATAGCTAACA 57.498 40.909 0.00 0.00 0.00 2.41
662 665 4.866508 AGCATGCATTTTATCCATGAGG 57.133 40.909 21.98 0.00 38.84 3.86
663 666 6.513180 AGAAAGCATGCATTTTATCCATGAG 58.487 36.000 21.98 0.00 38.84 2.90
729 732 3.710209 ACCTAGTTTGAGATTGCTGCT 57.290 42.857 0.00 0.00 0.00 4.24
730 733 4.508662 AGTACCTAGTTTGAGATTGCTGC 58.491 43.478 0.00 0.00 0.00 5.25
731 734 5.352569 CCAAGTACCTAGTTTGAGATTGCTG 59.647 44.000 0.00 0.00 0.00 4.41
732 735 5.248477 TCCAAGTACCTAGTTTGAGATTGCT 59.752 40.000 0.00 0.00 0.00 3.91
733 736 5.488341 TCCAAGTACCTAGTTTGAGATTGC 58.512 41.667 0.00 0.00 0.00 3.56
734 737 8.567285 AATTCCAAGTACCTAGTTTGAGATTG 57.433 34.615 0.00 0.00 0.00 2.67
744 747 7.283329 AGCCTGAATTAATTCCAAGTACCTAG 58.717 38.462 22.42 11.21 35.97 3.02
747 750 8.465273 AATAGCCTGAATTAATTCCAAGTACC 57.535 34.615 22.42 7.50 35.97 3.34
844 887 4.873129 CCCTGTCGATCGTGGCCG 62.873 72.222 15.94 3.62 0.00 6.13
1014 1107 4.041815 ACATAGAGGATCGCTAGGACTACA 59.958 45.833 11.34 0.00 42.67 2.74
1035 1128 2.526432 GTGAGGTAGTGGAGAAGGACA 58.474 52.381 0.00 0.00 0.00 4.02
1600 1693 0.321671 TCCTTGAACTCCCTCGCTTG 59.678 55.000 0.00 0.00 0.00 4.01
1602 1695 0.251832 TCTCCTTGAACTCCCTCGCT 60.252 55.000 0.00 0.00 0.00 4.93
1681 1774 2.350895 CAGGTCCATCCACGCCAA 59.649 61.111 0.00 0.00 39.02 4.52
1726 1819 4.415332 GTCGAGCCTCGCCGACAA 62.415 66.667 9.77 0.00 44.78 3.18
1789 1882 2.601398 CGTGCTGCCTGTCACTGTG 61.601 63.158 0.17 0.17 0.00 3.66
1857 1969 2.564947 GTTGAGGTCTGTGATGTCCTCT 59.435 50.000 10.66 0.00 44.57 3.69
1864 1976 3.755378 GCTTTGATGTTGAGGTCTGTGAT 59.245 43.478 0.00 0.00 0.00 3.06
1905 2020 7.040062 TGTTTGGTTATTTACAGGGATGTTCTG 60.040 37.037 0.00 0.00 38.16 3.02
1906 2021 7.007723 TGTTTGGTTATTTACAGGGATGTTCT 58.992 34.615 0.00 0.00 0.00 3.01
1907 2022 7.222000 TGTTTGGTTATTTACAGGGATGTTC 57.778 36.000 0.00 0.00 0.00 3.18
1909 2024 6.350949 GCATGTTTGGTTATTTACAGGGATGT 60.351 38.462 0.00 0.00 0.00 3.06
1957 2084 2.202046 CGCGCATGAACGTGTCAC 60.202 61.111 8.75 0.00 39.72 3.67
1964 2091 0.373370 TTCTGCATACGCGCATGAAC 59.627 50.000 23.20 6.74 42.06 3.18
1966 2093 1.428370 GGTTCTGCATACGCGCATGA 61.428 55.000 23.20 7.31 42.06 3.07
1973 2100 1.390123 CGTGAACAGGTTCTGCATACG 59.610 52.381 12.86 9.84 40.14 3.06
1975 2102 1.943968 GCCGTGAACAGGTTCTGCATA 60.944 52.381 12.86 0.00 40.14 3.14
2703 2874 1.948611 GCCCTCAGCAATACGGTTTGA 60.949 52.381 4.02 0.00 42.97 2.69
2704 2875 0.451783 GCCCTCAGCAATACGGTTTG 59.548 55.000 0.00 0.00 42.97 2.93
2706 2877 4.637771 GCCCTCAGCAATACGGTT 57.362 55.556 0.00 0.00 42.97 4.44
2716 2887 3.118112 ACAACTATTGGAGATGCCCTCAG 60.118 47.826 5.71 0.00 43.76 3.35
2717 2888 2.846206 ACAACTATTGGAGATGCCCTCA 59.154 45.455 5.71 0.00 43.76 3.86
2718 2889 3.567478 ACAACTATTGGAGATGCCCTC 57.433 47.619 0.00 0.00 41.22 4.30
2720 2891 4.973168 TGATACAACTATTGGAGATGCCC 58.027 43.478 0.00 0.00 31.16 5.36
2721 2892 6.000219 ACATGATACAACTATTGGAGATGCC 59.000 40.000 0.00 0.00 31.16 4.40
2722 2893 7.148738 CGTACATGATACAACTATTGGAGATGC 60.149 40.741 0.00 0.00 31.16 3.91
2723 2894 8.082242 TCGTACATGATACAACTATTGGAGATG 58.918 37.037 0.00 0.00 34.20 2.90
2724 2895 8.178313 TCGTACATGATACAACTATTGGAGAT 57.822 34.615 0.00 0.00 34.12 2.75
2725 2896 7.576861 TCGTACATGATACAACTATTGGAGA 57.423 36.000 0.00 0.00 34.12 3.71
2726 2897 8.818141 ATTCGTACATGATACAACTATTGGAG 57.182 34.615 0.00 0.00 34.12 3.86
2732 2903 9.471084 CATGGTTATTCGTACATGATACAACTA 57.529 33.333 0.00 0.00 42.39 2.24
2733 2904 8.201464 TCATGGTTATTCGTACATGATACAACT 58.799 33.333 0.00 0.00 43.23 3.16
2734 2905 8.360325 TCATGGTTATTCGTACATGATACAAC 57.640 34.615 0.00 0.00 43.23 3.32
2741 2912 6.183360 CCATCGATCATGGTTATTCGTACATG 60.183 42.308 13.19 0.00 46.72 3.21
2744 2915 5.763444 CCATCGATCATGGTTATTCGTAC 57.237 43.478 13.19 0.00 46.72 3.67
2755 2926 1.004595 CGCCATAGCCATCGATCATG 58.995 55.000 0.00 0.00 34.57 3.07
2756 2927 0.742281 GCGCCATAGCCATCGATCAT 60.742 55.000 0.00 0.00 34.57 2.45
2757 2928 1.374631 GCGCCATAGCCATCGATCA 60.375 57.895 0.00 0.00 34.57 2.92
2758 2929 2.447887 CGCGCCATAGCCATCGATC 61.448 63.158 0.00 0.00 34.57 3.69
2759 2930 2.433145 CGCGCCATAGCCATCGAT 60.433 61.111 0.00 0.00 34.57 3.59
2762 2933 4.996434 AGCCGCGCCATAGCCATC 62.996 66.667 0.00 0.00 34.57 3.51
2763 2934 4.569180 AAGCCGCGCCATAGCCAT 62.569 61.111 0.00 0.00 34.57 4.40
2766 2937 3.643978 CTCAAGCCGCGCCATAGC 61.644 66.667 0.00 0.00 0.00 2.97
2767 2938 2.202932 ACTCAAGCCGCGCCATAG 60.203 61.111 0.00 0.00 0.00 2.23
2768 2939 2.202878 GACTCAAGCCGCGCCATA 60.203 61.111 0.00 0.00 0.00 2.74
2772 2943 3.127533 ATTGGACTCAAGCCGCGC 61.128 61.111 0.00 0.00 36.19 6.86
2773 2944 1.091771 ATCATTGGACTCAAGCCGCG 61.092 55.000 0.00 0.00 36.19 6.46
2774 2945 0.659957 GATCATTGGACTCAAGCCGC 59.340 55.000 0.00 0.00 36.19 6.53
2775 2946 0.933097 CGATCATTGGACTCAAGCCG 59.067 55.000 0.00 0.00 36.19 5.52
2776 2947 1.936547 GTCGATCATTGGACTCAAGCC 59.063 52.381 0.00 0.00 36.19 4.35
2777 2948 2.898705 AGTCGATCATTGGACTCAAGC 58.101 47.619 0.00 0.00 36.29 4.01
2783 2954 2.561733 TGACGAGTCGATCATTGGAC 57.438 50.000 21.50 0.00 0.00 4.02
2784 2955 3.801114 AATGACGAGTCGATCATTGGA 57.199 42.857 27.37 7.92 42.57 3.53
2785 2956 5.043903 ACTAAATGACGAGTCGATCATTGG 58.956 41.667 28.04 25.14 43.21 3.16
2786 2957 5.743872 TGACTAAATGACGAGTCGATCATTG 59.256 40.000 28.04 22.24 43.21 2.82
2788 2959 5.297029 TCTGACTAAATGACGAGTCGATCAT 59.703 40.000 21.50 19.71 44.22 2.45
2789 2960 4.634443 TCTGACTAAATGACGAGTCGATCA 59.366 41.667 21.50 18.37 44.22 2.92
2790 2961 5.158101 TCTGACTAAATGACGAGTCGATC 57.842 43.478 21.50 13.27 44.22 3.69
2791 2962 5.759506 ATCTGACTAAATGACGAGTCGAT 57.240 39.130 21.50 3.12 44.22 3.59
2792 2963 5.816258 ACTATCTGACTAAATGACGAGTCGA 59.184 40.000 21.50 0.00 44.22 4.20
2793 2964 6.050454 ACTATCTGACTAAATGACGAGTCG 57.950 41.667 11.85 11.85 44.22 4.18
2794 2965 8.367943 TCTACTATCTGACTAAATGACGAGTC 57.632 38.462 0.00 0.00 42.08 3.36
2795 2966 8.734218 TTCTACTATCTGACTAAATGACGAGT 57.266 34.615 0.00 0.00 0.00 4.18
2796 2967 9.440784 GTTTCTACTATCTGACTAAATGACGAG 57.559 37.037 0.00 0.00 0.00 4.18
2797 2968 8.953313 TGTTTCTACTATCTGACTAAATGACGA 58.047 33.333 0.00 0.00 0.00 4.20
2798 2969 9.737427 ATGTTTCTACTATCTGACTAAATGACG 57.263 33.333 0.00 0.00 0.00 4.35
2806 2977 9.778741 TTTGTCAAATGTTTCTACTATCTGACT 57.221 29.630 0.00 0.00 33.49 3.41
2807 2978 9.813080 GTTTGTCAAATGTTTCTACTATCTGAC 57.187 33.333 0.40 0.00 33.05 3.51
2808 2979 9.778741 AGTTTGTCAAATGTTTCTACTATCTGA 57.221 29.630 0.40 0.00 0.00 3.27
3025 3221 7.996644 ACTCCCTCTGTTTTTAAATACAAGTCA 59.003 33.333 11.79 0.00 0.00 3.41
3026 3222 8.392372 ACTCCCTCTGTTTTTAAATACAAGTC 57.608 34.615 11.79 0.00 0.00 3.01
3110 3412 7.910162 GCTCAATGATGATTTGTACAATACGTT 59.090 33.333 9.56 4.77 34.37 3.99
3112 3414 7.408910 TGCTCAATGATGATTTGTACAATACG 58.591 34.615 9.56 0.00 34.37 3.06
3146 3453 0.595095 GTTGCTTCCCTGCTCTTGTG 59.405 55.000 0.00 0.00 0.00 3.33
3209 3758 7.324935 TGAAATTTCTGCTAACATGCATCAAT 58.675 30.769 18.64 0.00 42.48 2.57
3245 3877 5.985530 TGACGATATCATTAGCCTTTCTGTG 59.014 40.000 3.12 0.00 29.99 3.66
3269 3901 1.671054 CGACGGCACCAATGAAGGT 60.671 57.895 0.00 0.00 44.48 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.