Multiple sequence alignment - TraesCS6B01G405700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G405700 chr6B 100.000 4905 0 0 1 4905 680725871 680730775 0.000000e+00 9058.0
1 TraesCS6B01G405700 chr6B 79.213 635 91 18 3616 4222 681015897 681015276 2.130000e-108 403.0
2 TraesCS6B01G405700 chr6B 77.722 597 101 27 2929 3505 681018667 681018083 2.190000e-88 337.0
3 TraesCS6B01G405700 chr6B 95.882 170 6 1 2617 2786 529734086 529734254 1.740000e-69 274.0
4 TraesCS6B01G405700 chr6D 91.886 1368 60 17 2789 4127 448905320 448906665 0.000000e+00 1864.0
5 TraesCS6B01G405700 chr6D 87.599 758 40 18 964 1685 448615994 448615255 0.000000e+00 830.0
6 TraesCS6B01G405700 chr6D 87.682 755 39 18 961 1679 448903283 448904019 0.000000e+00 830.0
7 TraesCS6B01G405700 chr6D 91.511 483 11 10 2141 2623 448904870 448905322 5.350000e-179 638.0
8 TraesCS6B01G405700 chr6D 84.676 509 30 11 1 484 448810816 448811301 9.620000e-127 464.0
9 TraesCS6B01G405700 chr6D 90.476 294 24 3 483 772 448812754 448813047 7.700000e-103 385.0
10 TraesCS6B01G405700 chr6D 90.583 223 17 3 1914 2136 448904587 448904805 4.800000e-75 292.0
11 TraesCS6B01G405700 chr6D 93.467 199 7 3 767 959 448616365 448616167 1.730000e-74 291.0
12 TraesCS6B01G405700 chr6D 93.069 202 8 3 764 959 448902912 448903113 1.730000e-74 291.0
13 TraesCS6B01G405700 chr6D 90.367 218 16 3 4214 4430 448906663 448906876 1.040000e-71 281.0
14 TraesCS6B01G405700 chr6D 96.429 168 6 0 2621 2788 266777641 266777474 1.340000e-70 278.0
15 TraesCS6B01G405700 chr6D 92.814 167 10 2 1770 1936 448615256 448615092 1.760000e-59 241.0
16 TraesCS6B01G405700 chr6D 93.750 160 10 0 1770 1929 448904024 448904183 1.760000e-59 241.0
17 TraesCS6B01G405700 chr6D 94.215 121 7 0 4694 4814 448907672 448907792 8.380000e-43 185.0
18 TraesCS6B01G405700 chr6D 94.017 117 6 1 4785 4901 449105222 449105337 5.050000e-40 176.0
19 TraesCS6B01G405700 chr6D 96.552 58 1 1 4844 4901 448907790 448907846 1.450000e-15 95.3
20 TraesCS6B01G405700 chr6D 95.349 43 2 0 4656 4698 448907494 448907536 8.810000e-08 69.4
21 TraesCS6B01G405700 chr6A 87.251 1506 102 36 2772 4205 594981791 594983278 0.000000e+00 1635.0
22 TraesCS6B01G405700 chr6A 90.075 665 49 5 123 772 594959536 594960198 0.000000e+00 846.0
23 TraesCS6B01G405700 chr6A 86.650 794 43 27 961 1710 594979712 594980486 0.000000e+00 821.0
24 TraesCS6B01G405700 chr6A 93.028 502 10 8 2132 2627 594981283 594981765 0.000000e+00 710.0
25 TraesCS6B01G405700 chr6A 79.272 714 108 18 3538 4222 595168946 595168244 3.460000e-126 462.0
26 TraesCS6B01G405700 chr6A 78.966 580 70 30 2932 3504 595169596 595169062 1.010000e-91 348.0
27 TraesCS6B01G405700 chr6A 95.169 207 9 1 4695 4901 594983727 594983932 4.730000e-85 326.0
28 TraesCS6B01G405700 chr6A 95.918 196 8 0 764 959 594979343 594979538 7.920000e-83 318.0
29 TraesCS6B01G405700 chr6A 95.082 122 6 0 1 122 594959354 594959475 5.010000e-45 193.0
30 TraesCS6B01G405700 chr6A 93.478 92 2 1 2049 2136 594981037 594981128 3.080000e-27 134.0
31 TraesCS6B01G405700 chr6A 82.209 163 20 5 763 925 595171930 595171777 1.110000e-26 132.0
32 TraesCS6B01G405700 chr6A 81.379 145 23 3 964 1105 595171582 595171439 1.120000e-21 115.0
33 TraesCS6B01G405700 chr6A 90.909 77 7 0 4568 4644 594983293 594983369 2.420000e-18 104.0
34 TraesCS6B01G405700 chr6A 95.918 49 2 0 1881 1929 594980749 594980797 4.070000e-11 80.5
35 TraesCS6B01G405700 chr6A 93.023 43 3 0 4656 4698 594983545 594983587 4.100000e-06 63.9
36 TraesCS6B01G405700 chr2B 98.171 164 3 0 2620 2783 26101922 26101759 2.230000e-73 287.0
37 TraesCS6B01G405700 chr2B 97.024 168 5 0 2621 2788 485894319 485894152 2.890000e-72 283.0
38 TraesCS6B01G405700 chr2B 93.855 179 9 2 2613 2790 500939716 500939539 8.090000e-68 268.0
39 TraesCS6B01G405700 chr4B 96.988 166 5 0 2620 2785 625978408 625978573 3.740000e-71 279.0
40 TraesCS6B01G405700 chr1D 97.546 163 4 0 2621 2783 126223342 126223504 3.740000e-71 279.0
41 TraesCS6B01G405700 chr1D 97.546 163 4 0 2621 2783 160451495 160451657 3.740000e-71 279.0
42 TraesCS6B01G405700 chr3D 93.989 183 10 1 2617 2799 174415894 174415713 4.840000e-70 276.0
43 TraesCS6B01G405700 chr3D 77.652 264 50 6 2955 3215 412833460 412833717 8.500000e-33 152.0
44 TraesCS6B01G405700 chr3A 77.211 294 53 8 2930 3215 537486760 537486473 5.080000e-35 159.0
45 TraesCS6B01G405700 chr3B 76.871 294 54 8 2930 3215 539670824 539671111 2.360000e-33 154.0
46 TraesCS6B01G405700 chrUn 90.323 62 5 1 4844 4905 263807502 263807442 4.070000e-11 80.5
47 TraesCS6B01G405700 chrUn 91.525 59 4 1 4844 4902 289982461 289982518 4.070000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G405700 chr6B 680725871 680730775 4904 False 9058.000000 9058 100.000000 1 4905 1 chr6B.!!$F2 4904
1 TraesCS6B01G405700 chr6B 681015276 681018667 3391 True 370.000000 403 78.467500 2929 4222 2 chr6B.!!$R1 1293
2 TraesCS6B01G405700 chr6D 448902912 448907846 4934 False 478.670000 1864 92.496400 764 4901 10 chr6D.!!$F3 4137
3 TraesCS6B01G405700 chr6D 448615092 448616365 1273 True 454.000000 830 91.293333 767 1936 3 chr6D.!!$R2 1169
4 TraesCS6B01G405700 chr6D 448810816 448813047 2231 False 424.500000 464 87.576000 1 772 2 chr6D.!!$F2 771
5 TraesCS6B01G405700 chr6A 594959354 594960198 844 False 519.500000 846 92.578500 1 772 2 chr6A.!!$F1 771
6 TraesCS6B01G405700 chr6A 594979343 594983932 4589 False 465.822222 1635 92.371556 764 4901 9 chr6A.!!$F2 4137
7 TraesCS6B01G405700 chr6A 595168244 595171930 3686 True 264.250000 462 80.456500 763 4222 4 chr6A.!!$R1 3459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.390472 GCGACCTAAAGCTCAGCTGT 60.390 55.0 14.67 0.0 39.62 4.40 F
716 2253 0.464735 TTACGCACCACCAGCACTTT 60.465 50.0 0.00 0.0 0.00 2.66 F
1334 3107 0.037512 CTGGACTGACTGCACTCTGG 60.038 60.0 5.49 0.0 0.00 3.86 F
2233 4906 0.108615 CTGGAGCACTTACTGGGTCG 60.109 60.0 0.00 0.0 32.51 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1324 3097 0.037512 CCACTGTCTCCAGAGTGCAG 60.038 60.000 15.26 15.26 41.50 4.41 R
1642 3440 0.456142 CGGTTGAGAGATCGCGACAA 60.456 55.000 12.93 8.15 32.54 3.18 R
3325 6167 0.249031 GCCAGTGAACACAAGCAACC 60.249 55.000 7.68 0.00 33.52 3.77 R
3995 8986 1.008079 GCCCTCGGACCGTATAACG 60.008 63.158 14.79 0.00 42.11 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.259314 ATGCAGTGGTGGAGGCCA 61.259 61.111 5.01 0.00 35.93 5.36
63 64 3.695606 TGGAGGCCAGACAGCGAC 61.696 66.667 5.01 0.00 0.00 5.19
78 79 0.390472 GCGACCTAAAGCTCAGCTGT 60.390 55.000 14.67 0.00 39.62 4.40
89 90 4.500499 AGCTCAGCTGTAGGAAATTCAT 57.500 40.909 14.67 0.00 37.57 2.57
195 259 3.717400 AGAGCATGTACGTGGAGTATG 57.283 47.619 16.68 0.17 37.69 2.39
225 300 1.051812 AGACCATCCTTGATAGGGCG 58.948 55.000 0.00 0.00 42.26 6.13
231 306 3.181461 CCATCCTTGATAGGGCGGATATC 60.181 52.174 0.00 0.00 42.26 1.63
236 311 4.339814 CCTTGATAGGGCGGATATCTAGTC 59.660 50.000 2.05 0.00 37.94 2.59
244 319 2.891580 GCGGATATCTAGTCCAGGACAA 59.108 50.000 22.31 7.07 35.41 3.18
339 414 2.095263 GTGTGGTGTGTATTGATGTGGC 60.095 50.000 0.00 0.00 0.00 5.01
415 494 5.455612 CGGGGGTGATTACATATTTGTAGGT 60.456 44.000 0.00 0.00 39.43 3.08
554 2089 8.100135 AGAAATTGAGAACATAATCTCCTCCT 57.900 34.615 2.16 0.00 44.27 3.69
596 2131 2.057137 ACCAGAAAAGCTTGCAGTGA 57.943 45.000 0.00 0.00 0.00 3.41
602 2137 0.890542 AAAGCTTGCAGTGATCCGCA 60.891 50.000 0.00 0.00 36.05 5.69
606 2141 2.543578 TTGCAGTGATCCGCAAGAC 58.456 52.632 9.50 0.00 42.93 3.01
608 2143 2.456119 GCAGTGATCCGCAAGACCG 61.456 63.158 0.00 0.00 43.02 4.79
631 2166 1.026718 AGGTTGCCGAGCACAATAGC 61.027 55.000 0.00 0.00 38.71 2.97
661 2198 7.201812 GCTATAAACATCATCAACCATGTTGGA 60.202 37.037 7.08 0.00 41.42 3.53
716 2253 0.464735 TTACGCACCACCAGCACTTT 60.465 50.000 0.00 0.00 0.00 2.66
738 2275 2.349532 GCGGTTGCAGTTGTAAAGAGAC 60.350 50.000 0.00 0.00 42.15 3.36
806 2343 4.787280 CTCCTCCTCCCCGCCAGT 62.787 72.222 0.00 0.00 0.00 4.00
930 2473 3.504806 TCCCCCGGCCTCGAGATA 61.505 66.667 15.71 0.00 39.00 1.98
962 2685 3.316573 GAGGCCGGACCACCTTCTG 62.317 68.421 1.76 0.00 43.14 3.02
1099 2833 3.131223 CGATCCTCACATGGTTAGTGACT 59.869 47.826 0.00 0.00 40.80 3.41
1135 2869 6.145048 CCAAGTGACATCTTTTGCTTTGATTC 59.855 38.462 0.00 0.00 0.00 2.52
1137 2871 6.989659 AGTGACATCTTTTGCTTTGATTCAT 58.010 32.000 0.00 0.00 0.00 2.57
1138 2872 6.866770 AGTGACATCTTTTGCTTTGATTCATG 59.133 34.615 0.00 0.00 0.00 3.07
1139 2873 6.643770 GTGACATCTTTTGCTTTGATTCATGT 59.356 34.615 0.00 0.00 0.00 3.21
1140 2874 6.643360 TGACATCTTTTGCTTTGATTCATGTG 59.357 34.615 0.00 0.00 0.00 3.21
1141 2875 5.407387 ACATCTTTTGCTTTGATTCATGTGC 59.593 36.000 0.00 0.00 0.00 4.57
1143 2877 5.224888 TCTTTTGCTTTGATTCATGTGCTC 58.775 37.500 0.00 0.00 0.00 4.26
1144 2878 4.859304 TTTGCTTTGATTCATGTGCTCT 57.141 36.364 0.00 0.00 0.00 4.09
1145 2879 3.842732 TGCTTTGATTCATGTGCTCTG 57.157 42.857 0.00 0.00 0.00 3.35
1146 2880 2.094906 TGCTTTGATTCATGTGCTCTGC 60.095 45.455 0.00 0.00 0.00 4.26
1147 2881 2.163815 GCTTTGATTCATGTGCTCTGCT 59.836 45.455 0.00 0.00 0.00 4.24
1148 2882 3.759418 CTTTGATTCATGTGCTCTGCTG 58.241 45.455 0.00 0.00 0.00 4.41
1149 2883 2.773993 TGATTCATGTGCTCTGCTGA 57.226 45.000 0.00 0.00 0.00 4.26
1150 2884 3.277142 TGATTCATGTGCTCTGCTGAT 57.723 42.857 0.00 0.00 0.00 2.90
1151 2885 2.943033 TGATTCATGTGCTCTGCTGATG 59.057 45.455 0.00 0.00 0.00 3.07
1152 2886 2.484742 TTCATGTGCTCTGCTGATGT 57.515 45.000 0.00 0.00 0.00 3.06
1155 2889 3.725490 TCATGTGCTCTGCTGATGTATC 58.275 45.455 0.00 0.00 0.00 2.24
1156 2890 3.133362 TCATGTGCTCTGCTGATGTATCA 59.867 43.478 0.00 0.00 35.16 2.15
1158 2892 2.498885 TGTGCTCTGCTGATGTATCACT 59.501 45.455 0.00 0.00 32.50 3.41
1172 2931 8.940397 TGATGTATCACTACCTGATGATTCTA 57.060 34.615 0.00 0.00 40.12 2.10
1177 2942 6.907853 TCACTACCTGATGATTCTATGGAG 57.092 41.667 0.00 0.00 0.00 3.86
1190 2959 0.918983 TATGGAGGAGCAGGTTTGGG 59.081 55.000 0.00 0.00 0.00 4.12
1246 3015 1.822613 CATGAGCGCCTCCAGCAAT 60.823 57.895 2.29 0.00 44.04 3.56
1294 3067 1.005867 CATGGTTGGTGCTTGGTGC 60.006 57.895 0.00 0.00 43.25 5.01
1324 3097 0.687354 ATGTGGTGGTCTGGACTGAC 59.313 55.000 0.67 1.23 36.31 3.51
1325 3098 0.398522 TGTGGTGGTCTGGACTGACT 60.399 55.000 8.83 0.00 37.16 3.41
1327 3100 1.004440 GGTGGTCTGGACTGACTGC 60.004 63.158 8.83 3.34 37.16 4.40
1329 3102 0.601311 GTGGTCTGGACTGACTGCAC 60.601 60.000 8.83 6.26 37.16 4.57
1330 3103 0.760567 TGGTCTGGACTGACTGCACT 60.761 55.000 8.83 0.00 37.16 4.40
1331 3104 0.037790 GGTCTGGACTGACTGCACTC 60.038 60.000 8.83 0.00 37.16 3.51
1333 3106 0.964700 TCTGGACTGACTGCACTCTG 59.035 55.000 0.00 0.00 0.00 3.35
1334 3107 0.037512 CTGGACTGACTGCACTCTGG 60.038 60.000 5.49 0.00 0.00 3.86
1354 3127 3.709653 TGGAGACAGTGGTACTTTGAGTT 59.290 43.478 0.00 0.00 35.01 3.01
1358 3131 6.369065 GGAGACAGTGGTACTTTGAGTTTATG 59.631 42.308 0.00 0.00 0.00 1.90
1359 3132 7.062749 AGACAGTGGTACTTTGAGTTTATGA 57.937 36.000 0.00 0.00 0.00 2.15
1360 3133 6.929606 AGACAGTGGTACTTTGAGTTTATGAC 59.070 38.462 0.00 0.00 0.00 3.06
1361 3134 6.588204 ACAGTGGTACTTTGAGTTTATGACA 58.412 36.000 0.00 0.00 0.00 3.58
1362 3135 7.224297 ACAGTGGTACTTTGAGTTTATGACAT 58.776 34.615 0.00 0.00 0.00 3.06
1469 3256 3.438087 CACATGAACCTTAAGCACCTCTG 59.562 47.826 0.00 0.00 0.00 3.35
1514 3301 0.389426 TTCGGCTCAAGCGTAAGACC 60.389 55.000 0.00 0.00 43.26 3.85
1519 3306 1.337821 CTCAAGCGTAAGACCGACAC 58.662 55.000 0.00 0.00 43.02 3.67
1536 3323 3.637432 GACACTCACTCACTCTTGTCAG 58.363 50.000 0.00 0.00 34.71 3.51
1552 3339 5.182950 TCTTGTCAGTCTGTCATCTCTTCTC 59.817 44.000 0.46 0.00 0.00 2.87
1564 3351 3.924918 TCTCTTCTCTTCTGTTGACGG 57.075 47.619 0.00 0.00 0.00 4.79
1668 3471 1.475403 GATCTCTCAACCGGGAGTGA 58.525 55.000 6.32 10.57 40.47 3.41
1675 3478 1.026718 CAACCGGGAGTGATCTTGGC 61.027 60.000 6.32 0.00 0.00 4.52
1679 3482 0.179089 CGGGAGTGATCTTGGCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
1691 3494 1.729586 TGGCTCAGTTGTACTCCCTT 58.270 50.000 0.00 0.00 0.00 3.95
1692 3495 2.054799 TGGCTCAGTTGTACTCCCTTT 58.945 47.619 0.00 0.00 0.00 3.11
1702 3505 6.649557 CAGTTGTACTCCCTTTTGTACCTAAG 59.350 42.308 0.00 0.00 38.48 2.18
1710 3513 8.756927 ACTCCCTTTTGTACCTAAGTATAAGAC 58.243 37.037 0.00 0.00 32.04 3.01
1711 3514 7.775120 TCCCTTTTGTACCTAAGTATAAGACG 58.225 38.462 0.00 0.00 32.04 4.18
1712 3515 7.397192 TCCCTTTTGTACCTAAGTATAAGACGT 59.603 37.037 0.00 0.00 32.04 4.34
1713 3516 8.037166 CCCTTTTGTACCTAAGTATAAGACGTT 58.963 37.037 0.00 0.00 32.04 3.99
1714 3517 9.428097 CCTTTTGTACCTAAGTATAAGACGTTT 57.572 33.333 0.00 0.00 32.04 3.60
1716 3519 8.673626 TTTGTACCTAAGTATAAGACGTTTCG 57.326 34.615 0.00 0.00 32.04 3.46
1717 3520 6.785191 TGTACCTAAGTATAAGACGTTTCGG 58.215 40.000 0.00 0.00 0.00 4.30
1718 3521 5.904362 ACCTAAGTATAAGACGTTTCGGT 57.096 39.130 0.00 0.00 0.00 4.69
1719 3522 7.551262 TGTACCTAAGTATAAGACGTTTCGGTA 59.449 37.037 0.00 0.00 0.00 4.02
1720 3523 7.020914 ACCTAAGTATAAGACGTTTCGGTAG 57.979 40.000 0.00 0.00 0.00 3.18
1721 3524 6.038714 ACCTAAGTATAAGACGTTTCGGTAGG 59.961 42.308 0.00 0.00 0.00 3.18
1722 3525 4.298744 AGTATAAGACGTTTCGGTAGGC 57.701 45.455 0.00 0.00 0.00 3.93
1723 3526 3.950395 AGTATAAGACGTTTCGGTAGGCT 59.050 43.478 0.00 0.00 0.00 4.58
1724 3527 5.126067 AGTATAAGACGTTTCGGTAGGCTA 58.874 41.667 0.00 0.00 0.00 3.93
1725 3528 2.643933 AAGACGTTTCGGTAGGCTAC 57.356 50.000 16.40 16.40 0.00 3.58
1726 3529 1.831580 AGACGTTTCGGTAGGCTACT 58.168 50.000 23.01 2.29 0.00 2.57
1727 3530 2.991250 AGACGTTTCGGTAGGCTACTA 58.009 47.619 23.01 10.00 0.00 1.82
1728 3531 2.941720 AGACGTTTCGGTAGGCTACTAG 59.058 50.000 23.01 17.07 0.00 2.57
1729 3532 1.403323 ACGTTTCGGTAGGCTACTAGC 59.597 52.381 23.01 10.62 42.76 3.42
1730 3533 1.674962 CGTTTCGGTAGGCTACTAGCT 59.325 52.381 23.01 0.00 43.73 3.32
1731 3534 2.874701 CGTTTCGGTAGGCTACTAGCTA 59.125 50.000 23.01 7.62 43.73 3.32
1732 3535 3.059051 CGTTTCGGTAGGCTACTAGCTAG 60.059 52.174 23.01 19.44 43.73 3.42
1733 3536 2.181954 TCGGTAGGCTACTAGCTAGC 57.818 55.000 23.01 6.62 46.60 3.42
1742 3545 4.564940 GCTACTAGCTAGCCTACGAAAA 57.435 45.455 20.91 0.00 42.08 2.29
1743 3546 4.289342 GCTACTAGCTAGCCTACGAAAAC 58.711 47.826 20.91 0.00 42.08 2.43
1821 3624 7.114811 GCATTAACTTTGGTTCATGTACTTGTG 59.885 37.037 8.46 0.00 38.55 3.33
1847 3650 6.857777 AGATCAATAAAGCTTCCTTCATCG 57.142 37.500 0.00 0.00 0.00 3.84
1849 3652 4.199310 TCAATAAAGCTTCCTTCATCGGG 58.801 43.478 0.00 0.00 0.00 5.14
1929 3857 3.753272 ACTCAGACCAACATTACACATGC 59.247 43.478 0.00 0.00 0.00 4.06
1937 4390 5.945784 ACCAACATTACACATGCACTCTAAT 59.054 36.000 0.00 0.00 0.00 1.73
1953 4406 7.013274 TGCACTCTAATGAAAGCACTTAGTTTT 59.987 33.333 0.00 0.00 32.98 2.43
1966 4419 7.807680 AGCACTTAGTTTTCCTTAAATCTTCG 58.192 34.615 0.00 0.00 0.00 3.79
1986 4439 1.127582 GATGAGAAGCAACACTGTCGC 59.872 52.381 0.00 0.00 0.00 5.19
1988 4441 1.891060 GAGAAGCAACACTGTCGCCG 61.891 60.000 0.00 0.00 0.00 6.46
2060 4564 4.487714 ACTCTGTTGGACTGACTTTTCA 57.512 40.909 0.00 0.00 0.00 2.69
2185 4858 4.356442 ATTGCCCGCACGTTTGGC 62.356 61.111 11.79 11.79 45.56 4.52
2233 4906 0.108615 CTGGAGCACTTACTGGGTCG 60.109 60.000 0.00 0.00 32.51 4.79
2280 4953 2.526432 TCTAGCTCCACGAAAAGAGGT 58.474 47.619 0.00 0.00 43.02 3.85
2281 4954 3.693807 TCTAGCTCCACGAAAAGAGGTA 58.306 45.455 0.00 0.00 40.99 3.08
2282 4955 4.084287 TCTAGCTCCACGAAAAGAGGTAA 58.916 43.478 0.00 0.00 41.23 2.85
2489 5177 2.517959 CCAGCAAAACTTCTGGGATCA 58.482 47.619 0.00 0.00 44.64 2.92
2492 5180 3.822735 CAGCAAAACTTCTGGGATCAAGA 59.177 43.478 0.00 0.00 0.00 3.02
2493 5181 4.461781 CAGCAAAACTTCTGGGATCAAGAT 59.538 41.667 0.00 0.00 0.00 2.40
2626 5387 7.927092 GTGATTTCCTGTCTTATAACTACTCCC 59.073 40.741 0.00 0.00 0.00 4.30
2627 5388 7.844779 TGATTTCCTGTCTTATAACTACTCCCT 59.155 37.037 0.00 0.00 0.00 4.20
2628 5389 7.657023 TTTCCTGTCTTATAACTACTCCCTC 57.343 40.000 0.00 0.00 0.00 4.30
2629 5390 5.703310 TCCTGTCTTATAACTACTCCCTCC 58.297 45.833 0.00 0.00 0.00 4.30
2630 5391 4.519730 CCTGTCTTATAACTACTCCCTCCG 59.480 50.000 0.00 0.00 0.00 4.63
2631 5392 5.121380 TGTCTTATAACTACTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
2632 5393 5.513233 TGTCTTATAACTACTCCCTCCGTT 58.487 41.667 0.00 0.00 0.00 4.44
2633 5394 5.591877 TGTCTTATAACTACTCCCTCCGTTC 59.408 44.000 0.00 0.00 0.00 3.95
2634 5395 5.009510 GTCTTATAACTACTCCCTCCGTTCC 59.990 48.000 0.00 0.00 0.00 3.62
2635 5396 3.684408 ATAACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
2636 5397 4.803329 ATAACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
2637 5398 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2638 5399 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2639 5400 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2640 5401 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2641 5402 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2642 5403 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2643 5404 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2644 5405 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2645 5406 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2646 5407 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2647 5408 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2648 5409 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2649 5410 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2650 5411 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2651 5412 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2674 5435 7.967890 GTAGAGATTCTACTAGGTGGACTAC 57.032 44.000 8.60 0.00 44.45 2.73
2675 5436 6.578313 AGAGATTCTACTAGGTGGACTACA 57.422 41.667 0.00 0.00 0.00 2.74
2676 5437 7.156694 AGAGATTCTACTAGGTGGACTACAT 57.843 40.000 0.00 0.00 0.00 2.29
2677 5438 8.277720 AGAGATTCTACTAGGTGGACTACATA 57.722 38.462 0.00 0.00 0.00 2.29
2678 5439 8.158789 AGAGATTCTACTAGGTGGACTACATAC 58.841 40.741 0.00 0.00 0.00 2.39
2679 5440 6.935771 AGATTCTACTAGGTGGACTACATACG 59.064 42.308 0.00 0.00 0.00 3.06
2680 5441 4.965814 TCTACTAGGTGGACTACATACGG 58.034 47.826 0.00 0.00 0.00 4.02
2681 5442 3.939740 ACTAGGTGGACTACATACGGA 57.060 47.619 0.00 0.00 0.00 4.69
2682 5443 3.818180 ACTAGGTGGACTACATACGGAG 58.182 50.000 0.00 0.00 0.00 4.63
2683 5444 2.068834 AGGTGGACTACATACGGAGG 57.931 55.000 0.00 0.00 0.00 4.30
2684 5445 1.567649 AGGTGGACTACATACGGAGGA 59.432 52.381 0.00 0.00 0.00 3.71
2685 5446 2.024655 AGGTGGACTACATACGGAGGAA 60.025 50.000 0.00 0.00 0.00 3.36
2686 5447 2.762327 GGTGGACTACATACGGAGGAAA 59.238 50.000 0.00 0.00 0.00 3.13
2687 5448 3.196254 GGTGGACTACATACGGAGGAAAA 59.804 47.826 0.00 0.00 0.00 2.29
2688 5449 4.141779 GGTGGACTACATACGGAGGAAAAT 60.142 45.833 0.00 0.00 0.00 1.82
2689 5450 4.809426 GTGGACTACATACGGAGGAAAATG 59.191 45.833 0.00 0.00 0.00 2.32
2690 5451 4.712829 TGGACTACATACGGAGGAAAATGA 59.287 41.667 0.00 0.00 0.00 2.57
2691 5452 5.188163 TGGACTACATACGGAGGAAAATGAA 59.812 40.000 0.00 0.00 0.00 2.57
2692 5453 6.126883 TGGACTACATACGGAGGAAAATGAAT 60.127 38.462 0.00 0.00 0.00 2.57
2693 5454 6.202954 GGACTACATACGGAGGAAAATGAATG 59.797 42.308 0.00 0.00 0.00 2.67
2694 5455 6.884832 ACTACATACGGAGGAAAATGAATGA 58.115 36.000 0.00 0.00 0.00 2.57
2695 5456 7.335627 ACTACATACGGAGGAAAATGAATGAA 58.664 34.615 0.00 0.00 0.00 2.57
2696 5457 7.993183 ACTACATACGGAGGAAAATGAATGAAT 59.007 33.333 0.00 0.00 0.00 2.57
2697 5458 7.264373 ACATACGGAGGAAAATGAATGAATC 57.736 36.000 0.00 0.00 0.00 2.52
2698 5459 7.056635 ACATACGGAGGAAAATGAATGAATCT 58.943 34.615 0.00 0.00 0.00 2.40
2699 5460 8.210946 ACATACGGAGGAAAATGAATGAATCTA 58.789 33.333 0.00 0.00 0.00 1.98
2700 5461 6.927294 ACGGAGGAAAATGAATGAATCTAC 57.073 37.500 0.00 0.00 0.00 2.59
2701 5462 6.653989 ACGGAGGAAAATGAATGAATCTACT 58.346 36.000 0.00 0.00 0.00 2.57
2702 5463 6.763610 ACGGAGGAAAATGAATGAATCTACTC 59.236 38.462 0.00 0.00 0.00 2.59
2703 5464 6.989169 CGGAGGAAAATGAATGAATCTACTCT 59.011 38.462 0.00 0.00 0.00 3.24
2704 5465 7.497249 CGGAGGAAAATGAATGAATCTACTCTT 59.503 37.037 0.00 0.00 0.00 2.85
2705 5466 9.838339 GGAGGAAAATGAATGAATCTACTCTTA 57.162 33.333 0.00 0.00 0.00 2.10
2733 5494 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2734 5495 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2735 5496 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2736 5497 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
2737 5498 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2738 5499 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2739 5500 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2740 5501 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2741 5502 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2742 5503 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2743 5504 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
2744 5505 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
2745 5506 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
2746 5507 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
2747 5508 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
2748 5509 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
2749 5510 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
2750 5511 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
2751 5512 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
2752 5513 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
2753 5514 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
2754 5515 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
2755 5516 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
2756 5517 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
2757 5518 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
2758 5519 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
2759 5520 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
2760 5521 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
2761 5522 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
2776 5537 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2777 5538 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2778 5539 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2779 5540 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2780 5541 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2781 5542 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2782 5543 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2783 5544 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
2784 5545 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
2785 5546 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
2786 5547 1.777941 AGGAACGGAGGGAGTACATC 58.222 55.000 0.00 0.00 0.00 3.06
2787 5548 1.006758 AGGAACGGAGGGAGTACATCA 59.993 52.381 0.00 0.00 0.00 3.07
2788 5549 2.040178 GGAACGGAGGGAGTACATCAT 58.960 52.381 0.00 0.00 0.00 2.45
2789 5550 3.117246 AGGAACGGAGGGAGTACATCATA 60.117 47.826 0.00 0.00 0.00 2.15
2790 5551 3.005578 GGAACGGAGGGAGTACATCATAC 59.994 52.174 0.00 0.00 0.00 2.39
2791 5552 3.596940 ACGGAGGGAGTACATCATACT 57.403 47.619 0.00 0.00 0.00 2.12
2792 5553 3.488363 ACGGAGGGAGTACATCATACTC 58.512 50.000 5.67 5.67 42.28 2.59
2820 5581 3.405823 ACAGTGAAATTTGCCCCAATG 57.594 42.857 0.00 0.00 0.00 2.82
2848 5609 1.107114 ATTTGTCACCGCACACCAAA 58.893 45.000 0.00 0.00 0.00 3.28
2893 5654 1.683385 TGGTGATCAGAGGCGATACAG 59.317 52.381 0.00 0.00 0.00 2.74
2926 5723 3.403038 AGTGAATGTGTACAGAAGGTGC 58.597 45.455 0.00 0.00 0.00 5.01
3325 6167 2.096268 AGTGAATGTGATTTGTGCGACG 60.096 45.455 0.00 0.00 0.00 5.12
3333 6175 0.317770 ATTTGTGCGACGGTTGCTTG 60.318 50.000 20.38 0.00 0.00 4.01
3340 6182 0.315869 CGACGGTTGCTTGTGTTCAC 60.316 55.000 0.00 0.00 0.00 3.18
3404 6274 8.500773 TGTATTGTTACTCGGAACTTGAAATTC 58.499 33.333 0.00 0.00 0.00 2.17
3425 6295 1.895051 GTGAATTGCACGTGTATGGC 58.105 50.000 18.38 2.14 37.83 4.40
3505 6392 8.995027 AAATATGGCTCAATATTCACACCTAA 57.005 30.769 0.00 0.00 32.70 2.69
3786 8775 9.877178 TTCTTCATACCTTTTCTGATCTAGAAC 57.123 33.333 0.00 0.00 44.84 3.01
3820 8809 2.647529 CCCGTTCATTTTTGTAGGGC 57.352 50.000 0.00 0.00 0.00 5.19
3909 8900 2.781757 TCAAGGGCTGGATCTGATCATT 59.218 45.455 18.64 1.84 0.00 2.57
3910 8901 3.975982 TCAAGGGCTGGATCTGATCATTA 59.024 43.478 18.64 4.50 0.00 1.90
3911 8902 4.600547 TCAAGGGCTGGATCTGATCATTAT 59.399 41.667 18.64 0.00 0.00 1.28
3995 8986 6.253512 GGTCACTTCTTGTGTTGAAATTTGTC 59.746 38.462 0.00 0.00 46.27 3.18
4118 9122 0.179092 GTTAGTAGGCCGGTTGCGAT 60.179 55.000 1.90 0.00 42.61 4.58
4144 9149 2.083002 TGCGCTGATCTTTTGTATGCA 58.917 42.857 9.73 0.00 0.00 3.96
4205 9210 5.720371 ATCCTGATACTTGTAGCTAGCAG 57.280 43.478 18.83 7.92 0.00 4.24
4211 9216 1.625818 ACTTGTAGCTAGCAGTTGCCT 59.374 47.619 18.83 0.00 43.38 4.75
4212 9217 2.275318 CTTGTAGCTAGCAGTTGCCTC 58.725 52.381 18.83 0.00 43.38 4.70
4225 9230 3.019964 TGCCTCTGCATTTTGTCGT 57.980 47.368 0.00 0.00 44.23 4.34
4226 9231 2.177394 TGCCTCTGCATTTTGTCGTA 57.823 45.000 0.00 0.00 44.23 3.43
4227 9232 2.499197 TGCCTCTGCATTTTGTCGTAA 58.501 42.857 0.00 0.00 44.23 3.18
4228 9233 2.225491 TGCCTCTGCATTTTGTCGTAAC 59.775 45.455 0.00 0.00 44.23 2.50
4231 9236 3.185594 CCTCTGCATTTTGTCGTAACGAA 59.814 43.478 0.00 0.00 37.72 3.85
4237 9242 3.965292 TTTTGTCGTAACGAAATGCCA 57.035 38.095 0.00 0.00 37.72 4.92
4240 9245 2.210961 TGTCGTAACGAAATGCCACAA 58.789 42.857 0.00 0.00 37.72 3.33
4298 9303 1.208535 ACCCGACATAAGAATTCCGCA 59.791 47.619 0.65 0.00 0.00 5.69
4302 9307 2.349817 CGACATAAGAATTCCGCATGGC 60.350 50.000 0.65 4.70 34.14 4.40
4362 9367 1.568504 TGGTTGGGTCTATCTTCGCT 58.431 50.000 0.00 0.00 0.00 4.93
4366 9371 2.088104 TGGGTCTATCTTCGCTGGAT 57.912 50.000 0.00 0.00 0.00 3.41
4401 9407 0.111061 AAGAACTGGACTGGCATGCA 59.889 50.000 21.36 4.79 0.00 3.96
4402 9408 0.607489 AGAACTGGACTGGCATGCAC 60.607 55.000 21.36 9.64 0.00 4.57
4413 9419 3.321682 ACTGGCATGCACTGTTAAAATGT 59.678 39.130 21.36 0.00 0.00 2.71
4422 9428 5.462729 TGCACTGTTAAAATGTCATTTGCTG 59.537 36.000 11.54 10.78 31.77 4.41
4430 9436 9.065871 GTTAAAATGTCATTTGCTGCTAACTAG 57.934 33.333 11.54 0.00 31.77 2.57
4432 9438 7.921786 AAATGTCATTTGCTGCTAACTAGTA 57.078 32.000 10.05 0.00 0.00 1.82
4451 9546 7.948357 ACTAGTACTACATGTGTTGAAACTCA 58.052 34.615 9.11 0.87 36.91 3.41
4457 9552 7.250569 ACTACATGTGTTGAAACTCAAAACTG 58.749 34.615 9.11 8.55 43.34 3.16
4472 9567 5.076182 TCAAAACTGGGTGCATCTTATGAA 58.924 37.500 0.00 0.00 0.00 2.57
4492 9587 0.174617 TACATGACTTGATCGCGCCA 59.825 50.000 0.00 0.00 0.00 5.69
4536 9785 2.930826 TGTCCAAGTTTCTCAGGTCC 57.069 50.000 0.00 0.00 0.00 4.46
4540 9789 2.567615 TCCAAGTTTCTCAGGTCCTAGC 59.432 50.000 0.00 0.00 0.00 3.42
4557 9806 4.103153 TCCTAGCATCATCTGTTTAAGGGG 59.897 45.833 0.00 0.00 0.00 4.79
4562 9811 1.005450 TCATCTGTTTAAGGGGGCCAC 59.995 52.381 4.39 0.00 0.00 5.01
4563 9812 1.005924 CATCTGTTTAAGGGGGCCACT 59.994 52.381 0.00 0.00 0.00 4.00
4576 9838 1.228124 GCCACTGGGTGTTGCTACA 60.228 57.895 0.00 0.00 34.83 2.74
4610 9872 5.107760 GCTGTGTGTTTTGCAAATGTATCAG 60.108 40.000 13.65 17.85 0.00 2.90
4639 9901 1.960417 GGCTAACTCTTGATGCCTCC 58.040 55.000 0.00 0.00 40.36 4.30
4644 9906 1.649321 ACTCTTGATGCCTCCTGTGA 58.351 50.000 0.00 0.00 0.00 3.58
4646 9908 0.251354 TCTTGATGCCTCCTGTGAGC 59.749 55.000 0.00 0.00 37.29 4.26
4647 9909 0.747283 CTTGATGCCTCCTGTGAGCC 60.747 60.000 0.00 0.00 37.29 4.70
4649 9911 1.300963 GATGCCTCCTGTGAGCCAA 59.699 57.895 0.00 0.00 37.29 4.52
4654 9916 0.179936 CCTCCTGTGAGCCAAGGATC 59.820 60.000 0.00 0.00 37.29 3.36
4690 10124 4.154347 GAGCAGGCCTCCACCTCG 62.154 72.222 0.00 0.00 38.26 4.63
4706 10283 1.497991 CTCGTTCACGCTTTCCTTCA 58.502 50.000 0.00 0.00 39.60 3.02
4767 10344 0.332972 AGAAGATGGGGAAGGCAACC 59.667 55.000 0.00 0.00 37.17 3.77
4811 10388 3.394836 ACCCGGAAGCAGAGGAGC 61.395 66.667 0.73 0.00 0.00 4.70
4812 10389 3.393970 CCCGGAAGCAGAGGAGCA 61.394 66.667 0.73 0.00 36.85 4.26
4813 10390 2.125350 CCGGAAGCAGAGGAGCAC 60.125 66.667 0.00 0.00 36.85 4.40
4814 10391 2.125350 CGGAAGCAGAGGAGCACC 60.125 66.667 0.00 0.00 36.85 5.01
4815 10392 2.125350 GGAAGCAGAGGAGCACCG 60.125 66.667 0.00 0.00 41.83 4.94
4816 10393 2.650116 GGAAGCAGAGGAGCACCGA 61.650 63.158 0.00 0.00 41.83 4.69
4817 10394 1.446966 GAAGCAGAGGAGCACCGAC 60.447 63.158 0.00 0.00 41.83 4.79
4818 10395 2.844072 GAAGCAGAGGAGCACCGACC 62.844 65.000 0.00 0.00 41.83 4.79
4819 10396 4.803426 GCAGAGGAGCACCGACCG 62.803 72.222 0.00 0.00 41.83 4.79
4820 10397 3.374402 CAGAGGAGCACCGACCGT 61.374 66.667 0.00 0.00 41.83 4.83
4821 10398 2.600769 AGAGGAGCACCGACCGTT 60.601 61.111 0.00 0.00 41.83 4.44
4822 10399 2.207924 AGAGGAGCACCGACCGTTT 61.208 57.895 0.00 0.00 41.83 3.60
4823 10400 1.737008 GAGGAGCACCGACCGTTTC 60.737 63.158 0.00 0.00 41.83 2.78
4824 10401 2.029964 GGAGCACCGACCGTTTCA 59.970 61.111 0.00 0.00 0.00 2.69
4825 10402 2.027625 GGAGCACCGACCGTTTCAG 61.028 63.158 0.00 0.00 0.00 3.02
4826 10403 2.027625 GAGCACCGACCGTTTCAGG 61.028 63.158 0.00 0.00 37.30 3.86
4827 10404 3.723348 GCACCGACCGTTTCAGGC 61.723 66.667 0.00 0.00 33.69 4.85
4828 10405 3.411351 CACCGACCGTTTCAGGCG 61.411 66.667 0.00 0.00 33.69 5.52
4881 10490 6.877236 ACCAGTGAATTTTCTTGTGTGATTT 58.123 32.000 0.00 0.00 0.00 2.17
4887 10496 7.489113 GTGAATTTTCTTGTGTGATTTGTGTCT 59.511 33.333 0.00 0.00 0.00 3.41
4901 10510 1.072806 TGTGTCTCCTTGCAAGCAGAT 59.927 47.619 22.59 0.00 0.00 2.90
4902 10511 1.736681 GTGTCTCCTTGCAAGCAGATC 59.263 52.381 22.59 15.89 0.00 2.75
4903 10512 1.339438 TGTCTCCTTGCAAGCAGATCC 60.339 52.381 22.59 11.66 0.00 3.36
4904 10513 1.065564 GTCTCCTTGCAAGCAGATCCT 60.066 52.381 22.59 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.203523 CTGAGCTTTAGGTCGCTGTCT 59.796 52.381 4.67 0.00 44.88 3.41
78 79 3.901844 CTCCGGGGTAGATGAATTTCCTA 59.098 47.826 0.00 0.00 0.00 2.94
89 90 0.188587 ATCTCATGCTCCGGGGTAGA 59.811 55.000 1.62 1.35 0.00 2.59
195 259 6.656632 TCAAGGATGGTCTAGTATGATCAC 57.343 41.667 0.00 0.00 29.00 3.06
225 300 3.259625 GCCTTGTCCTGGACTAGATATCC 59.740 52.174 31.19 14.71 37.54 2.59
231 306 0.107945 GCTGCCTTGTCCTGGACTAG 60.108 60.000 25.32 25.32 35.74 2.57
236 311 2.633509 GCTTGCTGCCTTGTCCTGG 61.634 63.158 0.00 0.00 35.15 4.45
259 334 2.108168 CGGTCCCTAAGATTGGTCTCA 58.892 52.381 0.00 0.00 32.15 3.27
271 346 2.752829 CGGTATAAACCCTCGGTCCCTA 60.753 54.545 0.00 0.00 43.54 3.53
277 352 1.536709 CGAACCGGTATAAACCCTCGG 60.537 57.143 8.00 0.00 43.54 4.63
302 377 2.058595 CACTGGACGTCCCCCTAGG 61.059 68.421 31.19 15.68 34.29 3.02
529 2064 8.100135 AGGAGGAGATTATGTTCTCAATTTCT 57.900 34.615 0.00 0.00 43.28 2.52
574 2109 3.951037 TCACTGCAAGCTTTTCTGGTTTA 59.049 39.130 0.00 0.00 37.60 2.01
596 2131 1.079127 CCTGTTCGGTCTTGCGGAT 60.079 57.895 0.00 0.00 0.00 4.18
606 2141 3.423154 GCTCGGCAACCTGTTCGG 61.423 66.667 0.00 0.00 39.35 4.30
608 2143 1.444119 TTGTGCTCGGCAACCTGTTC 61.444 55.000 0.00 0.00 41.47 3.18
631 2166 9.006839 ACATGGTTGATGATGTTTATAGCTATG 57.993 33.333 16.77 0.00 35.80 2.23
668 2205 2.743664 CGAAGTGCTCAACAATGGATCA 59.256 45.455 0.00 0.00 0.00 2.92
738 2275 4.723309 AGAAATGCCCTAAGAAGCTATGG 58.277 43.478 0.00 0.00 0.00 2.74
1027 2750 1.638133 CAGAGCATGAAGACGGACAG 58.362 55.000 0.00 0.00 0.00 3.51
1077 2800 3.131223 AGTCACTAACCATGTGAGGATCG 59.869 47.826 0.00 0.00 43.90 3.69
1135 2869 3.247886 GTGATACATCAGCAGAGCACATG 59.752 47.826 0.00 0.00 37.51 3.21
1137 2871 2.498885 AGTGATACATCAGCAGAGCACA 59.501 45.455 0.00 0.00 37.51 4.57
1138 2872 3.176552 AGTGATACATCAGCAGAGCAC 57.823 47.619 0.00 0.00 37.51 4.40
1139 2873 3.068732 GGTAGTGATACATCAGCAGAGCA 59.931 47.826 0.00 0.00 37.51 4.26
1140 2874 3.320541 AGGTAGTGATACATCAGCAGAGC 59.679 47.826 0.00 0.00 37.51 4.09
1141 2875 4.582240 TCAGGTAGTGATACATCAGCAGAG 59.418 45.833 0.00 0.00 37.51 3.35
1143 2877 4.926140 TCAGGTAGTGATACATCAGCAG 57.074 45.455 0.00 0.00 37.51 4.24
1144 2878 4.895297 TCATCAGGTAGTGATACATCAGCA 59.105 41.667 0.00 0.00 44.73 4.41
1145 2879 5.459536 TCATCAGGTAGTGATACATCAGC 57.540 43.478 0.00 0.00 44.73 4.26
1146 2880 7.894708 AGAATCATCAGGTAGTGATACATCAG 58.105 38.462 0.00 0.00 44.73 2.90
1147 2881 7.846101 AGAATCATCAGGTAGTGATACATCA 57.154 36.000 0.00 0.00 44.73 3.07
1148 2882 9.800433 CATAGAATCATCAGGTAGTGATACATC 57.200 37.037 0.00 0.00 44.73 3.06
1149 2883 8.756927 CCATAGAATCATCAGGTAGTGATACAT 58.243 37.037 0.00 0.00 44.73 2.29
1150 2884 7.950124 TCCATAGAATCATCAGGTAGTGATACA 59.050 37.037 0.00 0.00 44.73 2.29
1151 2885 8.354711 TCCATAGAATCATCAGGTAGTGATAC 57.645 38.462 0.00 0.00 44.73 2.24
1152 2886 7.617329 CCTCCATAGAATCATCAGGTAGTGATA 59.383 40.741 0.00 0.00 44.73 2.15
1155 2889 5.777223 TCCTCCATAGAATCATCAGGTAGTG 59.223 44.000 0.00 0.00 0.00 2.74
1156 2890 5.970289 TCCTCCATAGAATCATCAGGTAGT 58.030 41.667 0.00 0.00 0.00 2.73
1158 2892 4.774726 GCTCCTCCATAGAATCATCAGGTA 59.225 45.833 0.00 0.00 0.00 3.08
1172 2931 1.142688 ACCCAAACCTGCTCCTCCAT 61.143 55.000 0.00 0.00 0.00 3.41
1177 2942 1.603739 GTCCACCCAAACCTGCTCC 60.604 63.158 0.00 0.00 0.00 4.70
1190 2959 1.024579 CCGCCCAAGTACATGTCCAC 61.025 60.000 0.00 0.00 0.00 4.02
1246 3015 2.092267 CCTCATGAACATGGGATCCACA 60.092 50.000 15.23 9.75 41.81 4.17
1294 3067 6.884295 TCCAGACCACCACATTAGAAATTAAG 59.116 38.462 0.00 0.00 0.00 1.85
1324 3097 0.037512 CCACTGTCTCCAGAGTGCAG 60.038 60.000 15.26 15.26 41.50 4.41
1325 3098 0.760567 ACCACTGTCTCCAGAGTGCA 60.761 55.000 0.00 0.00 41.50 4.57
1327 3100 2.520069 AGTACCACTGTCTCCAGAGTG 58.480 52.381 0.00 0.00 41.50 3.51
1329 3102 3.574396 TCAAAGTACCACTGTCTCCAGAG 59.426 47.826 0.00 0.00 41.50 3.35
1330 3103 3.572642 TCAAAGTACCACTGTCTCCAGA 58.427 45.455 0.00 0.00 41.50 3.86
1331 3104 3.322254 ACTCAAAGTACCACTGTCTCCAG 59.678 47.826 0.00 0.00 44.68 3.86
1333 3106 4.338379 AACTCAAAGTACCACTGTCTCC 57.662 45.455 0.00 0.00 0.00 3.71
1334 3107 7.116519 GTCATAAACTCAAAGTACCACTGTCTC 59.883 40.741 0.00 0.00 0.00 3.36
1354 3127 8.175925 TCAACAAAAACCATCAGATGTCATAA 57.824 30.769 9.64 0.00 0.00 1.90
1358 3131 6.680810 TCATCAACAAAAACCATCAGATGTC 58.319 36.000 9.64 0.00 34.71 3.06
1359 3132 6.653526 TCATCAACAAAAACCATCAGATGT 57.346 33.333 9.64 0.00 34.71 3.06
1360 3133 5.575606 GCTCATCAACAAAAACCATCAGATG 59.424 40.000 3.04 3.04 34.48 2.90
1361 3134 5.244402 TGCTCATCAACAAAAACCATCAGAT 59.756 36.000 0.00 0.00 0.00 2.90
1362 3135 4.583907 TGCTCATCAACAAAAACCATCAGA 59.416 37.500 0.00 0.00 0.00 3.27
1469 3256 2.200170 GAGGCCGACCATGTTGTTGC 62.200 60.000 0.00 0.00 39.06 4.17
1514 3301 2.033424 TGACAAGAGTGAGTGAGTGTCG 59.967 50.000 0.00 0.00 38.54 4.35
1519 3306 3.317711 ACAGACTGACAAGAGTGAGTGAG 59.682 47.826 10.08 0.00 42.47 3.51
1536 3323 5.643379 ACAGAAGAGAAGAGATGACAGAC 57.357 43.478 0.00 0.00 0.00 3.51
1552 3339 1.581934 TTCTGCACCGTCAACAGAAG 58.418 50.000 0.75 0.00 43.55 2.85
1564 3351 6.158598 ACAAATATGTGTTCCATTTCTGCAC 58.841 36.000 0.00 0.00 38.69 4.57
1642 3440 0.456142 CGGTTGAGAGATCGCGACAA 60.456 55.000 12.93 8.15 32.54 3.18
1643 3441 1.136774 CGGTTGAGAGATCGCGACA 59.863 57.895 12.93 0.27 32.54 4.35
1668 3471 2.237392 GGGAGTACAACTGAGCCAAGAT 59.763 50.000 0.00 0.00 0.00 2.40
1675 3478 4.995487 GGTACAAAAGGGAGTACAACTGAG 59.005 45.833 0.00 0.00 41.74 3.35
1679 3482 6.528321 ACTTAGGTACAAAAGGGAGTACAAC 58.472 40.000 10.23 0.00 41.74 3.32
1691 3494 7.754924 CCGAAACGTCTTATACTTAGGTACAAA 59.245 37.037 0.00 0.00 0.00 2.83
1692 3495 7.094377 ACCGAAACGTCTTATACTTAGGTACAA 60.094 37.037 0.00 0.00 0.00 2.41
1702 3505 4.298744 AGCCTACCGAAACGTCTTATAC 57.701 45.455 0.00 0.00 0.00 1.47
1710 3513 1.674962 AGCTAGTAGCCTACCGAAACG 59.325 52.381 18.65 0.00 43.77 3.60
1711 3514 4.486574 CTAGCTAGTAGCCTACCGAAAC 57.513 50.000 18.65 0.00 43.77 2.78
1721 3524 5.076098 CGTTTTCGTAGGCTAGCTAGTAGC 61.076 50.000 21.62 14.62 44.74 3.58
1722 3525 4.525686 CGTTTTCGTAGGCTAGCTAGTAG 58.474 47.826 21.62 9.14 38.65 2.57
1723 3526 4.542662 CGTTTTCGTAGGCTAGCTAGTA 57.457 45.455 21.62 4.85 38.65 1.82
1724 3527 3.417690 CGTTTTCGTAGGCTAGCTAGT 57.582 47.619 21.62 5.88 38.65 2.57
1738 3541 8.856490 TCCGTACCTAAATATAAGACGTTTTC 57.144 34.615 0.00 0.00 0.00 2.29
1739 3542 7.922811 CCTCCGTACCTAAATATAAGACGTTTT 59.077 37.037 0.00 0.00 0.00 2.43
1740 3543 7.068716 ACCTCCGTACCTAAATATAAGACGTTT 59.931 37.037 0.00 0.00 0.00 3.60
1741 3544 6.547510 ACCTCCGTACCTAAATATAAGACGTT 59.452 38.462 0.00 0.00 0.00 3.99
1742 3545 6.064717 ACCTCCGTACCTAAATATAAGACGT 58.935 40.000 0.00 0.00 0.00 4.34
1743 3546 6.566197 ACCTCCGTACCTAAATATAAGACG 57.434 41.667 0.00 0.00 0.00 4.18
1821 3624 8.279103 CGATGAAGGAAGCTTTATTGATCTTAC 58.721 37.037 16.30 0.00 0.00 2.34
1847 3650 2.529632 AGCCAATTCACTCCTTTTCCC 58.470 47.619 0.00 0.00 0.00 3.97
1849 3652 4.281941 AGGAAAGCCAATTCACTCCTTTTC 59.718 41.667 0.00 0.00 36.29 2.29
1929 3857 8.017946 GGAAAACTAAGTGCTTTCATTAGAGTG 58.982 37.037 0.00 0.00 33.66 3.51
1937 4390 9.131791 AGATTTAAGGAAAACTAAGTGCTTTCA 57.868 29.630 0.00 0.00 33.66 2.69
1966 4419 1.127582 GCGACAGTGTTGCTTCTCATC 59.872 52.381 25.53 0.00 39.63 2.92
2039 4539 4.487714 TGAAAAGTCAGTCCAACAGAGT 57.512 40.909 0.00 0.00 0.00 3.24
2040 4540 6.708054 AGTTATGAAAAGTCAGTCCAACAGAG 59.292 38.462 0.00 0.00 37.14 3.35
2041 4541 6.591935 AGTTATGAAAAGTCAGTCCAACAGA 58.408 36.000 0.00 0.00 37.14 3.41
2060 4564 5.427481 TCCTAAGGAATCCGGTTGAAGTTAT 59.573 40.000 0.00 0.00 0.00 1.89
2161 4834 2.108514 CGTGCGGGCAATCTGATGT 61.109 57.895 0.00 0.00 0.00 3.06
2185 4858 3.450817 ACAGTTGGAAAAGAAAACCAGGG 59.549 43.478 0.00 0.00 35.08 4.45
2405 5093 6.146837 CCAGTCTTCTCACATGAAAGTAACTG 59.853 42.308 0.00 10.62 0.00 3.16
2406 5094 6.183361 ACCAGTCTTCTCACATGAAAGTAACT 60.183 38.462 0.00 0.00 0.00 2.24
2498 5186 6.923508 GCAGCTTAGAAAAAGGAGCTTAAAAA 59.076 34.615 0.00 0.00 42.46 1.94
2499 5187 6.040391 TGCAGCTTAGAAAAAGGAGCTTAAAA 59.960 34.615 0.00 0.00 42.46 1.52
2501 5189 5.048713 GTGCAGCTTAGAAAAAGGAGCTTAA 60.049 40.000 0.00 0.00 42.46 1.85
2506 5194 3.067106 TCGTGCAGCTTAGAAAAAGGAG 58.933 45.455 0.00 0.00 0.00 3.69
2515 5218 4.626042 AGGAAGATTATCGTGCAGCTTAG 58.374 43.478 2.57 0.00 0.00 2.18
2623 5384 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2624 5385 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2626 5387 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2651 5412 7.687383 TGTAGTCCACCTAGTAGAATCTCTA 57.313 40.000 0.00 0.00 0.00 2.43
2652 5413 6.578313 TGTAGTCCACCTAGTAGAATCTCT 57.422 41.667 0.00 0.00 0.00 3.10
2653 5414 7.118101 CGTATGTAGTCCACCTAGTAGAATCTC 59.882 44.444 0.00 0.00 0.00 2.75
2654 5415 6.935771 CGTATGTAGTCCACCTAGTAGAATCT 59.064 42.308 0.00 0.00 0.00 2.40
2655 5416 6.149142 CCGTATGTAGTCCACCTAGTAGAATC 59.851 46.154 0.00 0.00 0.00 2.52
2656 5417 6.002704 CCGTATGTAGTCCACCTAGTAGAAT 58.997 44.000 0.00 0.00 0.00 2.40
2657 5418 5.130975 TCCGTATGTAGTCCACCTAGTAGAA 59.869 44.000 0.00 0.00 0.00 2.10
2658 5419 4.655649 TCCGTATGTAGTCCACCTAGTAGA 59.344 45.833 0.00 0.00 0.00 2.59
2659 5420 4.965814 TCCGTATGTAGTCCACCTAGTAG 58.034 47.826 0.00 0.00 0.00 2.57
2660 5421 4.202398 CCTCCGTATGTAGTCCACCTAGTA 60.202 50.000 0.00 0.00 0.00 1.82
2661 5422 3.434739 CCTCCGTATGTAGTCCACCTAGT 60.435 52.174 0.00 0.00 0.00 2.57
2662 5423 3.147629 CCTCCGTATGTAGTCCACCTAG 58.852 54.545 0.00 0.00 0.00 3.02
2663 5424 2.779430 TCCTCCGTATGTAGTCCACCTA 59.221 50.000 0.00 0.00 0.00 3.08
2664 5425 1.567649 TCCTCCGTATGTAGTCCACCT 59.432 52.381 0.00 0.00 0.00 4.00
2665 5426 2.062971 TCCTCCGTATGTAGTCCACC 57.937 55.000 0.00 0.00 0.00 4.61
2666 5427 4.460948 TTTTCCTCCGTATGTAGTCCAC 57.539 45.455 0.00 0.00 0.00 4.02
2667 5428 4.712829 TCATTTTCCTCCGTATGTAGTCCA 59.287 41.667 0.00 0.00 0.00 4.02
2668 5429 5.272283 TCATTTTCCTCCGTATGTAGTCC 57.728 43.478 0.00 0.00 0.00 3.85
2669 5430 6.984474 TCATTCATTTTCCTCCGTATGTAGTC 59.016 38.462 0.00 0.00 0.00 2.59
2670 5431 6.884832 TCATTCATTTTCCTCCGTATGTAGT 58.115 36.000 0.00 0.00 0.00 2.73
2671 5432 7.786178 TTCATTCATTTTCCTCCGTATGTAG 57.214 36.000 0.00 0.00 0.00 2.74
2672 5433 8.210946 AGATTCATTCATTTTCCTCCGTATGTA 58.789 33.333 0.00 0.00 0.00 2.29
2673 5434 7.056635 AGATTCATTCATTTTCCTCCGTATGT 58.943 34.615 0.00 0.00 0.00 2.29
2674 5435 7.502120 AGATTCATTCATTTTCCTCCGTATG 57.498 36.000 0.00 0.00 0.00 2.39
2675 5436 8.432805 AGTAGATTCATTCATTTTCCTCCGTAT 58.567 33.333 0.00 0.00 0.00 3.06
2676 5437 7.792032 AGTAGATTCATTCATTTTCCTCCGTA 58.208 34.615 0.00 0.00 0.00 4.02
2677 5438 6.653989 AGTAGATTCATTCATTTTCCTCCGT 58.346 36.000 0.00 0.00 0.00 4.69
2678 5439 6.989169 AGAGTAGATTCATTCATTTTCCTCCG 59.011 38.462 0.00 0.00 0.00 4.63
2679 5440 8.744568 AAGAGTAGATTCATTCATTTTCCTCC 57.255 34.615 0.00 0.00 0.00 4.30
2707 5468 8.576442 CCACATACGGATGTATATAGATGCATA 58.424 37.037 14.23 1.52 44.82 3.14
2708 5469 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2709 5470 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2710 5471 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2711 5472 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2712 5473 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2713 5474 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2714 5475 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2715 5476 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2716 5477 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2717 5478 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
2718 5479 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
2719 5480 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
2721 5482 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
2722 5483 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
2723 5484 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
2724 5485 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
2725 5486 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
2726 5487 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
2727 5488 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
2728 5489 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
2729 5490 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
2730 5491 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
2731 5492 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
2732 5493 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
2733 5494 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
2734 5495 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
2735 5496 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
2751 5512 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2752 5513 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2753 5514 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2754 5515 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2755 5516 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2756 5517 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2757 5518 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2758 5519 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2759 5520 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2760 5521 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2761 5522 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2762 5523 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2763 5524 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2764 5525 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2765 5526 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2766 5527 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
2767 5528 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
2768 5529 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2769 5530 3.890147 AGTATGATGTACTCCCTCCGTTC 59.110 47.826 0.00 0.00 0.00 3.95
2770 5531 3.890147 GAGTATGATGTACTCCCTCCGTT 59.110 47.826 4.30 0.00 38.33 4.44
2771 5532 3.488363 GAGTATGATGTACTCCCTCCGT 58.512 50.000 4.30 0.00 38.33 4.69
2788 5549 9.555727 GGCAAATTTCACTGTAATATAGGAGTA 57.444 33.333 0.00 0.00 0.00 2.59
2789 5550 7.502561 GGGCAAATTTCACTGTAATATAGGAGT 59.497 37.037 0.00 0.00 0.00 3.85
2790 5551 7.040409 GGGGCAAATTTCACTGTAATATAGGAG 60.040 40.741 0.00 0.00 0.00 3.69
2791 5552 6.775629 GGGGCAAATTTCACTGTAATATAGGA 59.224 38.462 0.00 0.00 0.00 2.94
2792 5553 6.549364 TGGGGCAAATTTCACTGTAATATAGG 59.451 38.462 0.00 0.00 0.00 2.57
2793 5554 7.581213 TGGGGCAAATTTCACTGTAATATAG 57.419 36.000 0.00 0.00 0.00 1.31
2820 5581 1.467342 GCGGTGACAAATAGTTGGTCC 59.533 52.381 7.93 5.69 39.22 4.46
2852 5613 9.094578 TCACCAAATTTTCCATCCAAATAGTTA 57.905 29.630 0.00 0.00 0.00 2.24
2855 5616 8.259411 TGATCACCAAATTTTCCATCCAAATAG 58.741 33.333 0.00 0.00 0.00 1.73
2893 5654 4.072131 ACACATTCACTAATGGTGTCCAC 58.928 43.478 0.00 0.00 45.72 4.02
3299 6141 6.249260 GTCGCACAAATCACATTCACTTATTC 59.751 38.462 0.00 0.00 0.00 1.75
3325 6167 0.249031 GCCAGTGAACACAAGCAACC 60.249 55.000 7.68 0.00 33.52 3.77
3333 6175 3.665745 AAAATCATGGCCAGTGAACAC 57.334 42.857 13.05 0.00 0.00 3.32
3404 6274 2.728846 GCCATACACGTGCAATTCACAG 60.729 50.000 17.22 0.00 45.92 3.66
3455 6342 3.912248 ACCACAGGTCGATTAGATACCT 58.088 45.455 0.00 0.00 44.54 3.08
3459 6346 3.104512 TCCAACCACAGGTCGATTAGAT 58.895 45.455 0.00 0.00 33.12 1.98
3461 6348 3.328382 TTCCAACCACAGGTCGATTAG 57.672 47.619 0.00 0.00 33.12 1.73
3505 6392 8.749354 AGAAGAACAAACAAGGAAAACTACAAT 58.251 29.630 0.00 0.00 0.00 2.71
3768 8757 5.246429 AGTTCCGTTCTAGATCAGAAAAGGT 59.754 40.000 18.67 7.62 44.89 3.50
3786 8775 1.232119 ACGGGCAAAAGTTAGTTCCG 58.768 50.000 0.00 0.00 41.45 4.30
3820 8809 4.778415 CCTGACACGCGACTCCCG 62.778 72.222 15.93 0.39 42.21 5.14
3909 8900 6.479990 GCATGTGAGTATGAGTAAACTGCATA 59.520 38.462 0.00 0.00 0.00 3.14
3910 8901 5.295292 GCATGTGAGTATGAGTAAACTGCAT 59.705 40.000 0.00 0.00 0.00 3.96
3911 8902 4.631377 GCATGTGAGTATGAGTAAACTGCA 59.369 41.667 0.00 0.00 0.00 4.41
3995 8986 1.008079 GCCCTCGGACCGTATAACG 60.008 63.158 14.79 0.00 42.11 3.18
4088 9092 1.594833 CTACTAACCGCTGCCACCA 59.405 57.895 0.00 0.00 0.00 4.17
4089 9093 1.153429 CCTACTAACCGCTGCCACC 60.153 63.158 0.00 0.00 0.00 4.61
4090 9094 1.814169 GCCTACTAACCGCTGCCAC 60.814 63.158 0.00 0.00 0.00 5.01
4118 9122 1.469703 CAAAAGATCAGCGCATCACCA 59.530 47.619 11.47 0.00 0.00 4.17
4162 9167 7.921214 CAGGATAACATGAGATACAACTACGTT 59.079 37.037 0.00 0.00 0.00 3.99
4164 9169 7.649057 TCAGGATAACATGAGATACAACTACG 58.351 38.462 0.00 0.00 32.94 3.51
4168 9173 9.988815 AAGTATCAGGATAACATGAGATACAAC 57.011 33.333 0.00 0.00 40.10 3.32
4211 9216 4.797693 TTTCGTTACGACAAAATGCAGA 57.202 36.364 7.06 0.00 34.89 4.26
4212 9217 5.406156 CATTTCGTTACGACAAAATGCAG 57.594 39.130 7.06 0.00 34.89 4.41
4219 9224 2.210961 TGTGGCATTTCGTTACGACAA 58.789 42.857 7.06 5.93 34.89 3.18
4221 9226 2.953640 TTGTGGCATTTCGTTACGAC 57.046 45.000 7.06 0.00 34.89 4.34
4222 9227 3.251245 ACAATTGTGGCATTTCGTTACGA 59.749 39.130 11.07 2.33 0.00 3.43
4223 9228 3.560503 ACAATTGTGGCATTTCGTTACG 58.439 40.909 11.07 0.00 0.00 3.18
4224 9229 5.571357 CCTAACAATTGTGGCATTTCGTTAC 59.429 40.000 12.82 0.00 0.00 2.50
4225 9230 5.241949 ACCTAACAATTGTGGCATTTCGTTA 59.758 36.000 12.82 0.00 0.00 3.18
4226 9231 4.038642 ACCTAACAATTGTGGCATTTCGTT 59.961 37.500 12.82 0.00 0.00 3.85
4227 9232 3.572255 ACCTAACAATTGTGGCATTTCGT 59.428 39.130 12.82 0.00 0.00 3.85
4228 9233 4.173036 ACCTAACAATTGTGGCATTTCG 57.827 40.909 12.82 0.00 0.00 3.46
4231 9236 5.806654 AGAAACCTAACAATTGTGGCATT 57.193 34.783 12.82 8.77 0.00 3.56
4269 9274 4.665833 TCTTATGTCGGGTTCCACTATG 57.334 45.455 0.00 0.00 0.00 2.23
4270 9275 5.888982 ATTCTTATGTCGGGTTCCACTAT 57.111 39.130 0.00 0.00 0.00 2.12
4271 9276 5.395990 GGAATTCTTATGTCGGGTTCCACTA 60.396 44.000 5.23 0.00 35.05 2.74
4298 9303 6.817765 TGAAGTTATCTTTTCTTTCGCCAT 57.182 33.333 0.00 0.00 33.64 4.40
4302 9307 6.611381 TGCCATGAAGTTATCTTTTCTTTCG 58.389 36.000 0.00 0.00 33.64 3.46
4339 9344 3.065371 GCGAAGATAGACCCAACCATTTG 59.935 47.826 0.00 0.00 0.00 2.32
4352 9357 3.244033 GGATGGATCCAGCGAAGATAG 57.756 52.381 23.14 0.00 46.38 2.08
4366 9371 3.265221 AGTTCTTTCATGCTGAGGATGGA 59.735 43.478 14.06 1.82 0.00 3.41
4401 9407 5.846203 AGCAGCAAATGACATTTTAACAGT 58.154 33.333 10.77 0.00 0.00 3.55
4402 9408 7.596248 AGTTAGCAGCAAATGACATTTTAACAG 59.404 33.333 22.45 10.89 29.44 3.16
4413 9419 7.165460 TGTAGTACTAGTTAGCAGCAAATGA 57.835 36.000 1.87 0.00 0.00 2.57
4422 9428 8.645487 GTTTCAACACATGTAGTACTAGTTAGC 58.355 37.037 1.87 0.00 0.00 3.09
4430 9436 8.395633 AGTTTTGAGTTTCAACACATGTAGTAC 58.604 33.333 0.00 0.00 38.98 2.73
4432 9438 7.250569 CAGTTTTGAGTTTCAACACATGTAGT 58.749 34.615 0.00 0.00 38.98 2.73
4451 9546 6.663093 TGTATTCATAAGATGCACCCAGTTTT 59.337 34.615 0.00 0.00 0.00 2.43
4457 9552 6.000219 AGTCATGTATTCATAAGATGCACCC 59.000 40.000 0.00 0.00 32.47 4.61
4472 9567 1.202521 TGGCGCGATCAAGTCATGTAT 60.203 47.619 12.10 0.00 0.00 2.29
4536 9785 4.392940 CCCCCTTAAACAGATGATGCTAG 58.607 47.826 0.00 0.00 0.00 3.42
4540 9789 2.310538 GGCCCCCTTAAACAGATGATG 58.689 52.381 0.00 0.00 0.00 3.07
4587 9849 5.978919 ACTGATACATTTGCAAAACACACAG 59.021 36.000 17.19 21.65 0.00 3.66
4639 9901 1.093159 GCTTGATCCTTGGCTCACAG 58.907 55.000 0.00 0.00 0.00 3.66
4644 9906 1.813092 CGCTATGCTTGATCCTTGGCT 60.813 52.381 0.00 0.00 0.00 4.75
4646 9908 1.233019 CCGCTATGCTTGATCCTTGG 58.767 55.000 0.00 0.00 0.00 3.61
4647 9909 0.590195 GCCGCTATGCTTGATCCTTG 59.410 55.000 0.00 0.00 0.00 3.61
4649 9911 1.301244 CGCCGCTATGCTTGATCCT 60.301 57.895 0.00 0.00 0.00 3.24
4654 9916 2.879070 CTGCTCGCCGCTATGCTTG 61.879 63.158 0.00 0.00 40.11 4.01
4690 10124 2.416893 GAGGATGAAGGAAAGCGTGAAC 59.583 50.000 0.00 0.00 0.00 3.18
4691 10125 2.615493 GGAGGATGAAGGAAAGCGTGAA 60.615 50.000 0.00 0.00 0.00 3.18
4706 10283 3.438131 TCTATTGGAACTGGGGAGGAT 57.562 47.619 0.00 0.00 0.00 3.24
4796 10373 2.125350 GTGCTCCTCTGCTTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
4811 10388 3.411351 CGCCTGAAACGGTCGGTG 61.411 66.667 0.00 0.00 0.00 4.94
4812 10389 4.675029 CCGCCTGAAACGGTCGGT 62.675 66.667 0.00 0.00 45.70 4.69
4834 10411 1.210155 GAATCACGTGGCACAAGGC 59.790 57.895 19.09 0.00 44.16 4.35
4835 10412 0.950836 TTGAATCACGTGGCACAAGG 59.049 50.000 19.09 6.14 44.16 3.61
4836 10413 1.603802 ACTTGAATCACGTGGCACAAG 59.396 47.619 28.85 28.85 44.16 3.16
4837 10414 1.674359 ACTTGAATCACGTGGCACAA 58.326 45.000 19.09 16.58 44.16 3.33
4838 10415 2.139917 GTACTTGAATCACGTGGCACA 58.860 47.619 19.09 10.26 0.00 4.57
4839 10416 1.463444 GGTACTTGAATCACGTGGCAC 59.537 52.381 17.00 7.79 0.00 5.01
4840 10417 1.070914 TGGTACTTGAATCACGTGGCA 59.929 47.619 17.00 9.08 0.00 4.92
4841 10418 1.732259 CTGGTACTTGAATCACGTGGC 59.268 52.381 17.00 6.38 0.00 5.01
4842 10419 2.736721 CACTGGTACTTGAATCACGTGG 59.263 50.000 17.00 0.08 0.00 4.94
4881 10490 0.469494 TCTGCTTGCAAGGAGACACA 59.531 50.000 37.67 21.66 46.63 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.