Multiple sequence alignment - TraesCS6B01G405600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G405600 chr6B 100.000 2717 0 0 1 2717 680724260 680726976 0.000000e+00 5018.0
1 TraesCS6B01G405600 chr6D 90.826 1210 62 10 912 2095 448810115 448811301 0.000000e+00 1574.0
2 TraesCS6B01G405600 chr6D 90.476 294 24 3 2094 2383 448812754 448813047 4.240000e-103 385.0
3 TraesCS6B01G405600 chr6D 97.838 185 4 0 359 543 448809398 448809582 1.210000e-83 320.0
4 TraesCS6B01G405600 chr6D 87.361 269 21 5 651 907 448809812 448810079 2.050000e-76 296.0
5 TraesCS6B01G405600 chr6D 93.467 199 7 3 2378 2570 448616365 448616167 9.520000e-75 291.0
6 TraesCS6B01G405600 chr6D 93.069 202 8 3 2375 2570 448902912 448903113 9.520000e-75 291.0
7 TraesCS6B01G405600 chr6D 94.737 133 7 0 2575 2707 448615994 448615862 9.860000e-50 207.0
8 TraesCS6B01G405600 chr6D 94.118 136 8 0 2572 2707 448903283 448903418 9.860000e-50 207.0
9 TraesCS6B01G405600 chr6D 95.902 122 5 0 534 655 448809613 448809734 5.930000e-47 198.0
10 TraesCS6B01G405600 chr6A 95.504 823 36 1 912 1733 594958653 594959475 0.000000e+00 1314.0
11 TraesCS6B01G405600 chr6A 90.075 665 49 5 1734 2383 594959536 594960198 0.000000e+00 846.0
12 TraesCS6B01G405600 chr6A 88.715 576 34 16 359 907 594958046 594958617 0.000000e+00 675.0
13 TraesCS6B01G405600 chr6A 95.918 196 8 0 2375 2570 594979343 594979538 4.370000e-83 318.0
14 TraesCS6B01G405600 chr6A 94.512 164 7 1 205 366 222682673 222682836 4.490000e-63 252.0
15 TraesCS6B01G405600 chr6A 93.939 165 8 1 206 368 109115424 109115260 5.810000e-62 248.0
16 TraesCS6B01G405600 chr6A 95.070 142 7 0 2572 2713 594979712 594979853 9.790000e-55 224.0
17 TraesCS6B01G405600 chr6A 82.209 163 20 5 2374 2536 595171930 595171777 6.100000e-27 132.0
18 TraesCS6B01G405600 chr6A 81.379 145 23 3 2575 2716 595171582 595171439 6.150000e-22 115.0
19 TraesCS6B01G405600 chr2A 77.002 487 94 13 1140 1620 187203971 187204445 2.070000e-66 263.0
20 TraesCS6B01G405600 chr3A 96.053 152 4 1 210 359 429460899 429461050 2.090000e-61 246.0
21 TraesCS6B01G405600 chr3A 82.883 111 11 6 1148 1251 655727507 655727616 2.880000e-15 93.5
22 TraesCS6B01G405600 chr5B 96.000 150 4 1 211 358 652825070 652825219 2.700000e-60 243.0
23 TraesCS6B01G405600 chr5B 76.812 345 65 11 1148 1486 578815554 578815889 2.150000e-41 180.0
24 TraesCS6B01G405600 chr3B 95.425 153 5 1 209 359 824153994 824153842 2.700000e-60 243.0
25 TraesCS6B01G405600 chr3B 72.222 486 115 18 1148 1620 685227502 685227980 6.100000e-27 132.0
26 TraesCS6B01G405600 chr2B 96.000 150 4 1 211 358 273752549 273752400 2.700000e-60 243.0
27 TraesCS6B01G405600 chr2B 94.771 153 6 1 208 358 169501452 169501300 1.260000e-58 237.0
28 TraesCS6B01G405600 chr2B 75.468 481 103 15 1148 1622 248690846 248691317 1.270000e-53 220.0
29 TraesCS6B01G405600 chr1B 94.268 157 7 1 204 358 101247630 101247786 3.500000e-59 239.0
30 TraesCS6B01G405600 chr7B 94.737 152 6 1 209 358 40085987 40086138 4.520000e-58 235.0
31 TraesCS6B01G405600 chr5A 84.685 111 17 0 1379 1489 591977242 591977352 7.950000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G405600 chr6B 680724260 680726976 2716 False 5018.0 5018 100.000000 1 2717 1 chr6B.!!$F1 2716
1 TraesCS6B01G405600 chr6D 448809398 448813047 3649 False 554.6 1574 92.480600 359 2383 5 chr6D.!!$F1 2024
2 TraesCS6B01G405600 chr6D 448615862 448616365 503 True 249.0 291 94.102000 2378 2707 2 chr6D.!!$R1 329
3 TraesCS6B01G405600 chr6D 448902912 448903418 506 False 249.0 291 93.593500 2375 2707 2 chr6D.!!$F2 332
4 TraesCS6B01G405600 chr6A 594958046 594960198 2152 False 945.0 1314 91.431333 359 2383 3 chr6A.!!$F2 2024
5 TraesCS6B01G405600 chr6A 594979343 594979853 510 False 271.0 318 95.494000 2375 2713 2 chr6A.!!$F3 338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.025513 GCATCGTTCATCTGTCGTGC 59.974 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 2092 0.107945 GCTGCCTTGTCCTGGACTAG 60.108 60.0 25.32 25.32 35.74 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.780503 ACCTTGCCATTAATCCCTGC 58.219 50.000 0.00 0.00 0.00 4.85
21 22 1.043022 CCTTGCCATTAATCCCTGCC 58.957 55.000 0.00 0.00 0.00 4.85
22 23 1.043022 CTTGCCATTAATCCCTGCCC 58.957 55.000 0.00 0.00 0.00 5.36
23 24 0.636101 TTGCCATTAATCCCTGCCCT 59.364 50.000 0.00 0.00 0.00 5.19
24 25 1.528600 TGCCATTAATCCCTGCCCTA 58.471 50.000 0.00 0.00 0.00 3.53
25 26 1.856259 TGCCATTAATCCCTGCCCTAA 59.144 47.619 0.00 0.00 0.00 2.69
26 27 2.450500 TGCCATTAATCCCTGCCCTAAT 59.549 45.455 0.00 0.00 0.00 1.73
27 28 2.827921 GCCATTAATCCCTGCCCTAATG 59.172 50.000 0.00 0.00 33.45 1.90
28 29 3.434309 CCATTAATCCCTGCCCTAATGG 58.566 50.000 5.55 5.55 42.49 3.16
29 30 4.387026 CATTAATCCCTGCCCTAATGGA 57.613 45.455 0.00 0.00 35.39 3.41
30 31 4.939255 CATTAATCCCTGCCCTAATGGAT 58.061 43.478 0.00 0.00 39.26 3.41
31 32 6.078456 CATTAATCCCTGCCCTAATGGATA 57.922 41.667 0.00 0.00 36.60 2.59
32 33 6.676558 CATTAATCCCTGCCCTAATGGATAT 58.323 40.000 0.00 0.00 36.60 1.63
33 34 4.598036 AATCCCTGCCCTAATGGATATG 57.402 45.455 0.00 0.00 36.60 1.78
34 35 2.278245 TCCCTGCCCTAATGGATATGG 58.722 52.381 0.00 0.00 35.39 2.74
35 36 2.157864 TCCCTGCCCTAATGGATATGGA 60.158 50.000 0.00 0.00 35.39 3.41
36 37 2.025887 CCCTGCCCTAATGGATATGGAC 60.026 54.545 0.00 0.00 35.39 4.02
37 38 2.355108 CCTGCCCTAATGGATATGGACG 60.355 54.545 0.00 0.00 35.39 4.79
38 39 2.303022 CTGCCCTAATGGATATGGACGT 59.697 50.000 0.00 0.00 35.39 4.34
39 40 2.038426 TGCCCTAATGGATATGGACGTG 59.962 50.000 0.00 0.00 35.39 4.49
40 41 2.615493 GCCCTAATGGATATGGACGTGG 60.615 54.545 0.00 0.00 35.39 4.94
41 42 2.903784 CCCTAATGGATATGGACGTGGA 59.096 50.000 0.00 0.00 35.39 4.02
42 43 3.055819 CCCTAATGGATATGGACGTGGAG 60.056 52.174 0.00 0.00 35.39 3.86
43 44 2.550830 AATGGATATGGACGTGGAGC 57.449 50.000 0.00 0.00 0.00 4.70
44 45 6.925561 CCTAATGGATATGGACGTGGAGCG 62.926 54.167 0.00 0.00 40.48 5.03
45 46 1.664965 GGATATGGACGTGGAGCGC 60.665 63.158 0.00 0.00 46.11 5.92
46 47 1.067416 GATATGGACGTGGAGCGCA 59.933 57.895 11.47 0.00 46.11 6.09
47 48 0.941463 GATATGGACGTGGAGCGCAG 60.941 60.000 11.47 0.00 46.11 5.18
60 61 3.573558 CGCAGCCACGTTATTGGT 58.426 55.556 0.00 0.00 39.09 3.67
61 62 2.757212 CGCAGCCACGTTATTGGTA 58.243 52.632 0.00 0.00 39.09 3.25
62 63 1.295792 CGCAGCCACGTTATTGGTAT 58.704 50.000 0.00 0.00 39.09 2.73
63 64 1.668751 CGCAGCCACGTTATTGGTATT 59.331 47.619 0.00 0.00 39.09 1.89
64 65 2.286184 CGCAGCCACGTTATTGGTATTC 60.286 50.000 0.00 0.00 39.09 1.75
65 66 2.943033 GCAGCCACGTTATTGGTATTCT 59.057 45.455 0.00 0.00 39.09 2.40
66 67 3.002348 GCAGCCACGTTATTGGTATTCTC 59.998 47.826 0.00 0.00 39.09 2.87
67 68 3.560068 CAGCCACGTTATTGGTATTCTCC 59.440 47.826 0.00 0.00 39.09 3.71
68 69 3.454812 AGCCACGTTATTGGTATTCTCCT 59.545 43.478 0.00 0.00 39.09 3.69
69 70 4.080526 AGCCACGTTATTGGTATTCTCCTT 60.081 41.667 0.00 0.00 39.09 3.36
70 71 4.638865 GCCACGTTATTGGTATTCTCCTTT 59.361 41.667 0.00 0.00 39.09 3.11
71 72 5.124936 GCCACGTTATTGGTATTCTCCTTTT 59.875 40.000 0.00 0.00 39.09 2.27
72 73 6.349860 GCCACGTTATTGGTATTCTCCTTTTT 60.350 38.462 0.00 0.00 39.09 1.94
96 97 6.997239 TTTTCTCAGGAGTCATGATTCATG 57.003 37.500 22.48 22.48 42.60 3.07
97 98 5.688814 TTCTCAGGAGTCATGATTCATGT 57.311 39.130 25.75 7.84 41.98 3.21
98 99 5.019785 TCTCAGGAGTCATGATTCATGTG 57.980 43.478 25.75 23.61 41.98 3.21
99 100 4.468868 TCTCAGGAGTCATGATTCATGTGT 59.531 41.667 25.75 13.12 41.98 3.72
100 101 4.510571 TCAGGAGTCATGATTCATGTGTG 58.489 43.478 25.75 14.62 41.98 3.82
101 102 4.019950 TCAGGAGTCATGATTCATGTGTGT 60.020 41.667 25.75 8.87 41.98 3.72
102 103 4.094442 CAGGAGTCATGATTCATGTGTGTG 59.906 45.833 20.82 12.87 41.98 3.82
103 104 4.005650 GGAGTCATGATTCATGTGTGTGT 58.994 43.478 22.64 5.91 41.98 3.72
104 105 4.142752 GGAGTCATGATTCATGTGTGTGTG 60.143 45.833 22.64 0.50 41.98 3.82
105 106 4.392047 AGTCATGATTCATGTGTGTGTGT 58.608 39.130 22.64 1.75 41.98 3.72
106 107 4.214758 AGTCATGATTCATGTGTGTGTGTG 59.785 41.667 22.64 0.00 41.98 3.82
107 108 4.023792 GTCATGATTCATGTGTGTGTGTGT 60.024 41.667 22.64 0.00 41.98 3.72
108 109 3.967203 TGATTCATGTGTGTGTGTGTG 57.033 42.857 0.00 0.00 0.00 3.82
109 110 3.277715 TGATTCATGTGTGTGTGTGTGT 58.722 40.909 0.00 0.00 0.00 3.72
110 111 3.065095 TGATTCATGTGTGTGTGTGTGTG 59.935 43.478 0.00 0.00 0.00 3.82
111 112 2.106477 TCATGTGTGTGTGTGTGTGT 57.894 45.000 0.00 0.00 0.00 3.72
112 113 3.252974 TCATGTGTGTGTGTGTGTGTA 57.747 42.857 0.00 0.00 0.00 2.90
113 114 3.802866 TCATGTGTGTGTGTGTGTGTAT 58.197 40.909 0.00 0.00 0.00 2.29
114 115 4.950050 TCATGTGTGTGTGTGTGTGTATA 58.050 39.130 0.00 0.00 0.00 1.47
115 116 5.546526 TCATGTGTGTGTGTGTGTGTATAT 58.453 37.500 0.00 0.00 0.00 0.86
116 117 6.692486 TCATGTGTGTGTGTGTGTGTATATA 58.308 36.000 0.00 0.00 0.00 0.86
117 118 7.327214 TCATGTGTGTGTGTGTGTGTATATAT 58.673 34.615 0.00 0.00 0.00 0.86
118 119 8.470805 TCATGTGTGTGTGTGTGTGTATATATA 58.529 33.333 0.00 0.00 0.00 0.86
119 120 9.260002 CATGTGTGTGTGTGTGTGTATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
142 143 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
143 144 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
144 145 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
145 146 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
146 147 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
147 148 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
148 149 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
149 150 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
150 151 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
151 152 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
152 153 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
153 154 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
154 155 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
155 156 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
156 157 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
157 158 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
158 159 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
159 160 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
160 161 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
161 162 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
162 163 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
163 164 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
164 165 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
165 166 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
166 167 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
167 168 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
168 169 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
169 170 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
170 171 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
171 172 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
172 173 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
173 174 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
174 175 1.136565 GTGTGTGTGTGTGTGTGCC 59.863 57.895 0.00 0.00 0.00 5.01
175 176 1.002746 TGTGTGTGTGTGTGTGCCT 60.003 52.632 0.00 0.00 0.00 4.75
176 177 1.024046 TGTGTGTGTGTGTGTGCCTC 61.024 55.000 0.00 0.00 0.00 4.70
177 178 1.451207 TGTGTGTGTGTGTGCCTCC 60.451 57.895 0.00 0.00 0.00 4.30
178 179 2.203001 TGTGTGTGTGTGCCTCCG 60.203 61.111 0.00 0.00 0.00 4.63
179 180 2.108157 GTGTGTGTGTGCCTCCGA 59.892 61.111 0.00 0.00 0.00 4.55
180 181 1.956170 GTGTGTGTGTGCCTCCGAG 60.956 63.158 0.00 0.00 0.00 4.63
181 182 2.357517 GTGTGTGTGCCTCCGAGG 60.358 66.667 10.41 10.41 38.80 4.63
182 183 3.625897 TGTGTGTGCCTCCGAGGG 61.626 66.667 16.51 0.00 35.37 4.30
196 197 4.664267 AGGGCTCCCTCAGTGGCA 62.664 66.667 0.54 0.00 44.43 4.92
197 198 4.106925 GGGCTCCCTCAGTGGCAG 62.107 72.222 0.00 0.00 36.31 4.85
198 199 3.005539 GGCTCCCTCAGTGGCAGA 61.006 66.667 0.00 0.00 34.81 4.26
199 200 2.583520 GCTCCCTCAGTGGCAGAG 59.416 66.667 0.00 0.00 0.00 3.35
200 201 2.583520 CTCCCTCAGTGGCAGAGC 59.416 66.667 0.00 0.00 0.00 4.09
201 202 2.203832 TCCCTCAGTGGCAGAGCA 60.204 61.111 0.00 0.00 0.00 4.26
202 203 2.241479 CTCCCTCAGTGGCAGAGCAG 62.241 65.000 0.00 0.00 0.00 4.24
203 204 2.288778 CCCTCAGTGGCAGAGCAGA 61.289 63.158 0.00 0.00 0.00 4.26
204 205 1.218585 CCTCAGTGGCAGAGCAGAG 59.781 63.158 0.00 0.00 0.00 3.35
205 206 1.448189 CTCAGTGGCAGAGCAGAGC 60.448 63.158 0.00 0.00 0.00 4.09
206 207 2.168666 CTCAGTGGCAGAGCAGAGCA 62.169 60.000 0.00 0.00 0.00 4.26
207 208 1.302271 CAGTGGCAGAGCAGAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
208 209 0.887836 CAGTGGCAGAGCAGAGCAAA 60.888 55.000 0.00 0.00 0.00 3.68
209 210 0.179009 AGTGGCAGAGCAGAGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
210 211 0.240411 GTGGCAGAGCAGAGCAAAAG 59.760 55.000 0.00 0.00 0.00 2.27
211 212 0.109153 TGGCAGAGCAGAGCAAAAGA 59.891 50.000 0.00 0.00 0.00 2.52
212 213 0.803740 GGCAGAGCAGAGCAAAAGAG 59.196 55.000 0.00 0.00 0.00 2.85
213 214 0.168568 GCAGAGCAGAGCAAAAGAGC 59.831 55.000 0.00 0.00 0.00 4.09
214 215 1.520494 CAGAGCAGAGCAAAAGAGCA 58.480 50.000 0.00 0.00 36.85 4.26
215 216 1.465387 CAGAGCAGAGCAAAAGAGCAG 59.535 52.381 0.00 0.00 36.85 4.24
216 217 1.072015 AGAGCAGAGCAAAAGAGCAGT 59.928 47.619 0.00 0.00 36.85 4.40
217 218 1.197264 GAGCAGAGCAAAAGAGCAGTG 59.803 52.381 0.00 0.00 36.85 3.66
218 219 0.386985 GCAGAGCAAAAGAGCAGTGC 60.387 55.000 7.13 7.13 37.99 4.40
222 223 2.260844 AGCAAAAGAGCAGTGCTACA 57.739 45.000 19.77 0.00 46.52 2.74
223 224 1.876156 AGCAAAAGAGCAGTGCTACAC 59.124 47.619 19.77 5.83 46.52 2.90
224 225 1.603802 GCAAAAGAGCAGTGCTACACA 59.396 47.619 19.77 0.00 39.88 3.72
225 226 4.845382 AGCAAAAGAGCAGTGCTACACAC 61.845 47.826 19.77 4.98 46.52 3.82
236 237 3.096461 GTGCTACACACGATACTGTACG 58.904 50.000 0.00 7.80 40.07 3.67
237 238 2.107178 GCTACACACGATACTGTACGC 58.893 52.381 0.00 0.00 0.00 4.42
238 239 2.476686 GCTACACACGATACTGTACGCA 60.477 50.000 0.00 0.00 0.00 5.24
239 240 1.973138 ACACACGATACTGTACGCAC 58.027 50.000 0.00 0.00 0.00 5.34
240 241 0.905175 CACACGATACTGTACGCACG 59.095 55.000 0.00 0.00 0.00 5.34
241 242 0.798159 ACACGATACTGTACGCACGA 59.202 50.000 0.00 0.00 0.00 4.35
242 243 1.399440 ACACGATACTGTACGCACGAT 59.601 47.619 0.00 0.00 0.00 3.73
243 244 2.159476 ACACGATACTGTACGCACGATT 60.159 45.455 0.00 0.00 0.00 3.34
244 245 2.462927 CACGATACTGTACGCACGATTC 59.537 50.000 0.00 0.00 0.00 2.52
245 246 2.096335 ACGATACTGTACGCACGATTCA 59.904 45.455 0.00 0.00 0.00 2.57
246 247 3.242969 ACGATACTGTACGCACGATTCAT 60.243 43.478 0.00 0.00 0.00 2.57
247 248 3.117994 CGATACTGTACGCACGATTCATG 59.882 47.826 0.00 0.00 0.00 3.07
248 249 0.999406 ACTGTACGCACGATTCATGC 59.001 50.000 0.00 0.00 39.81 4.06
249 250 0.998669 CTGTACGCACGATTCATGCA 59.001 50.000 5.49 0.00 43.57 3.96
250 251 0.718904 TGTACGCACGATTCATGCAC 59.281 50.000 5.49 0.00 43.57 4.57
251 252 0.314259 GTACGCACGATTCATGCACG 60.314 55.000 5.49 0.00 43.57 5.34
252 253 0.456995 TACGCACGATTCATGCACGA 60.457 50.000 5.49 0.00 43.57 4.35
253 254 1.296145 CGCACGATTCATGCACGAC 60.296 57.895 5.49 4.37 43.57 4.34
254 255 1.787215 GCACGATTCATGCACGACA 59.213 52.632 0.00 0.00 42.88 4.35
255 256 0.165727 GCACGATTCATGCACGACAA 59.834 50.000 0.00 0.00 42.88 3.18
256 257 1.869503 CACGATTCATGCACGACAAC 58.130 50.000 11.51 0.00 0.00 3.32
257 258 1.194322 CACGATTCATGCACGACAACA 59.806 47.619 11.51 0.00 0.00 3.33
258 259 1.460743 ACGATTCATGCACGACAACAG 59.539 47.619 11.51 0.00 0.00 3.16
259 260 1.726248 CGATTCATGCACGACAACAGA 59.274 47.619 0.00 0.00 0.00 3.41
260 261 2.349580 CGATTCATGCACGACAACAGAT 59.650 45.455 0.00 0.00 0.00 2.90
261 262 3.551485 CGATTCATGCACGACAACAGATA 59.449 43.478 0.00 0.00 0.00 1.98
262 263 4.548916 CGATTCATGCACGACAACAGATAC 60.549 45.833 0.00 0.00 0.00 2.24
263 264 2.616960 TCATGCACGACAACAGATACC 58.383 47.619 0.00 0.00 0.00 2.73
264 265 2.233676 TCATGCACGACAACAGATACCT 59.766 45.455 0.00 0.00 0.00 3.08
265 266 2.078849 TGCACGACAACAGATACCTG 57.921 50.000 0.00 0.00 45.76 4.00
275 276 2.515926 CAGATACCTGTCCGTCCATG 57.484 55.000 0.00 0.00 35.70 3.66
276 277 0.753262 AGATACCTGTCCGTCCATGC 59.247 55.000 0.00 0.00 0.00 4.06
277 278 0.464036 GATACCTGTCCGTCCATGCA 59.536 55.000 0.00 0.00 0.00 3.96
278 279 1.070758 GATACCTGTCCGTCCATGCAT 59.929 52.381 0.00 0.00 0.00 3.96
279 280 0.177836 TACCTGTCCGTCCATGCATG 59.822 55.000 20.19 20.19 0.00 4.06
280 281 1.078214 CCTGTCCGTCCATGCATGT 60.078 57.895 24.58 0.00 0.00 3.21
281 282 0.177836 CCTGTCCGTCCATGCATGTA 59.822 55.000 24.58 6.94 0.00 2.29
282 283 1.575244 CTGTCCGTCCATGCATGTAG 58.425 55.000 24.58 14.67 0.00 2.74
283 284 0.461870 TGTCCGTCCATGCATGTAGC 60.462 55.000 24.58 12.98 45.96 3.58
293 294 2.687842 GCATGTAGCAGAGTCCAGC 58.312 57.895 0.00 0.00 44.79 4.85
294 295 0.107993 GCATGTAGCAGAGTCCAGCA 60.108 55.000 7.79 0.00 44.79 4.41
295 296 1.937278 CATGTAGCAGAGTCCAGCAG 58.063 55.000 7.79 0.00 0.00 4.24
296 297 1.479730 CATGTAGCAGAGTCCAGCAGA 59.520 52.381 7.79 0.00 0.00 4.26
297 298 0.891373 TGTAGCAGAGTCCAGCAGAC 59.109 55.000 7.79 0.00 46.71 3.51
307 308 2.019984 GTCCAGCAGACCATTTGATCC 58.980 52.381 0.00 0.00 39.84 3.36
308 309 1.064463 TCCAGCAGACCATTTGATCCC 60.064 52.381 0.00 0.00 0.00 3.85
309 310 1.019673 CAGCAGACCATTTGATCCCG 58.980 55.000 0.00 0.00 0.00 5.14
310 311 0.749454 AGCAGACCATTTGATCCCGC 60.749 55.000 0.00 0.00 0.00 6.13
311 312 1.031571 GCAGACCATTTGATCCCGCA 61.032 55.000 0.00 0.00 0.00 5.69
312 313 1.683943 CAGACCATTTGATCCCGCAT 58.316 50.000 0.00 0.00 0.00 4.73
313 314 1.605710 CAGACCATTTGATCCCGCATC 59.394 52.381 0.00 0.00 0.00 3.91
314 315 0.588252 GACCATTTGATCCCGCATCG 59.412 55.000 0.00 0.00 33.61 3.84
315 316 0.107214 ACCATTTGATCCCGCATCGT 60.107 50.000 0.00 0.00 33.61 3.73
316 317 1.024271 CCATTTGATCCCGCATCGTT 58.976 50.000 0.00 0.00 33.61 3.85
317 318 1.002468 CCATTTGATCCCGCATCGTTC 60.002 52.381 0.00 0.00 33.61 3.95
318 319 1.670295 CATTTGATCCCGCATCGTTCA 59.330 47.619 0.00 0.00 33.61 3.18
319 320 2.036958 TTTGATCCCGCATCGTTCAT 57.963 45.000 0.00 0.00 33.61 2.57
320 321 1.581934 TTGATCCCGCATCGTTCATC 58.418 50.000 0.00 0.00 33.61 2.92
321 322 0.752658 TGATCCCGCATCGTTCATCT 59.247 50.000 0.00 0.00 33.61 2.90
322 323 1.143305 GATCCCGCATCGTTCATCTG 58.857 55.000 0.00 0.00 0.00 2.90
323 324 0.465705 ATCCCGCATCGTTCATCTGT 59.534 50.000 0.00 0.00 0.00 3.41
324 325 0.179111 TCCCGCATCGTTCATCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
325 326 1.482621 CCCGCATCGTTCATCTGTCG 61.483 60.000 0.00 0.00 0.00 4.35
326 327 0.802222 CCGCATCGTTCATCTGTCGT 60.802 55.000 0.00 0.00 0.00 4.34
327 328 0.295763 CGCATCGTTCATCTGTCGTG 59.704 55.000 0.00 0.00 0.00 4.35
328 329 0.025513 GCATCGTTCATCTGTCGTGC 59.974 55.000 0.00 0.00 0.00 5.34
329 330 1.349234 CATCGTTCATCTGTCGTGCA 58.651 50.000 0.00 0.00 0.00 4.57
330 331 1.929169 CATCGTTCATCTGTCGTGCAT 59.071 47.619 0.00 0.00 0.00 3.96
331 332 2.931512 TCGTTCATCTGTCGTGCATA 57.068 45.000 0.00 0.00 0.00 3.14
332 333 2.526077 TCGTTCATCTGTCGTGCATAC 58.474 47.619 0.00 0.00 0.00 2.39
333 334 2.163613 TCGTTCATCTGTCGTGCATACT 59.836 45.455 0.00 0.00 0.00 2.12
334 335 2.279921 CGTTCATCTGTCGTGCATACTG 59.720 50.000 0.00 0.00 0.00 2.74
335 336 3.254060 GTTCATCTGTCGTGCATACTGT 58.746 45.455 0.00 0.00 0.00 3.55
336 337 3.592898 TCATCTGTCGTGCATACTGTT 57.407 42.857 0.00 0.00 0.00 3.16
337 338 3.253230 TCATCTGTCGTGCATACTGTTG 58.747 45.455 0.00 2.06 0.00 3.33
338 339 2.812358 TCTGTCGTGCATACTGTTGT 57.188 45.000 0.00 0.00 0.00 3.32
339 340 2.672714 TCTGTCGTGCATACTGTTGTC 58.327 47.619 0.00 0.00 0.00 3.18
340 341 1.386748 CTGTCGTGCATACTGTTGTCG 59.613 52.381 0.00 0.00 0.00 4.35
341 342 1.269361 TGTCGTGCATACTGTTGTCGT 60.269 47.619 0.00 0.00 0.00 4.34
342 343 1.385743 GTCGTGCATACTGTTGTCGTC 59.614 52.381 0.00 0.00 0.00 4.20
343 344 0.713883 CGTGCATACTGTTGTCGTCC 59.286 55.000 0.00 0.00 0.00 4.79
344 345 0.713883 GTGCATACTGTTGTCGTCCG 59.286 55.000 0.00 0.00 0.00 4.79
345 346 1.011968 TGCATACTGTTGTCGTCCGC 61.012 55.000 0.00 0.00 0.00 5.54
346 347 1.988409 CATACTGTTGTCGTCCGCG 59.012 57.895 0.00 0.00 39.92 6.46
347 348 1.804326 ATACTGTTGTCGTCCGCGC 60.804 57.895 0.00 0.00 38.14 6.86
348 349 2.480853 ATACTGTTGTCGTCCGCGCA 62.481 55.000 8.75 0.00 38.14 6.09
349 350 3.767230 CTGTTGTCGTCCGCGCAG 61.767 66.667 8.75 0.00 38.14 5.18
401 402 1.262882 GCGGTACCTCGTTTAACTCG 58.737 55.000 10.90 0.00 0.00 4.18
562 603 4.513692 TGTCCGTTTTGTAACATGGAGAAG 59.486 41.667 0.00 0.00 33.75 2.85
586 630 3.335579 AGGTTTCCAAATAGTCGACTGC 58.664 45.455 28.12 6.40 0.00 4.40
590 634 2.176045 TCCAAATAGTCGACTGCAGGA 58.824 47.619 28.12 23.32 0.00 3.86
615 659 6.166279 TGGTCTTTTAGAGTGACACATGATC 58.834 40.000 8.59 0.00 32.84 2.92
778 922 2.343758 GAGCAACGAGGAGCACCA 59.656 61.111 2.07 0.00 38.94 4.17
779 923 1.739562 GAGCAACGAGGAGCACCAG 60.740 63.158 2.07 0.00 38.94 4.00
806 950 2.256461 GCCGCTTGCCTTGTGAAG 59.744 61.111 0.00 0.00 0.00 3.02
919 1094 0.666913 CGGGATCGTGTATCTTCGGT 59.333 55.000 0.00 0.00 34.75 4.69
942 1117 1.411041 GTATTCGAGTACTGCCCCCT 58.589 55.000 10.57 0.00 0.00 4.79
983 1159 0.683973 TCGGCCCCAAACTACGTTTA 59.316 50.000 0.00 0.00 33.70 2.01
1020 1196 2.429930 CCTCGGCACCCAAAGTCA 59.570 61.111 0.00 0.00 0.00 3.41
1377 1553 1.827969 GTCATGAGGTCCTACTGCACT 59.172 52.381 0.00 0.00 0.00 4.40
1390 1566 2.543578 TGCACTCGCATGGAGAAAC 58.456 52.632 15.51 6.92 45.36 2.78
1404 1580 0.886490 AGAAACTGTTCCAGCGCCTG 60.886 55.000 2.29 1.18 34.37 4.85
1452 1628 3.007940 TGAACGAGAGGGACATCATTTGT 59.992 43.478 0.00 0.00 42.79 2.83
1503 1679 0.687757 AGAAGGTGGAGGAGCGCATA 60.688 55.000 11.47 0.00 0.00 3.14
1505 1681 1.690219 AAGGTGGAGGAGCGCATAGG 61.690 60.000 11.47 0.00 0.00 2.57
1665 1841 3.259314 ATGCAGTGGTGGAGGCCA 61.259 61.111 5.01 0.00 35.93 5.36
1674 1850 3.695606 TGGAGGCCAGACAGCGAC 61.696 66.667 5.01 0.00 0.00 5.19
1689 1865 0.390472 GCGACCTAAAGCTCAGCTGT 60.390 55.000 14.67 0.00 39.62 4.40
1700 1876 4.500499 AGCTCAGCTGTAGGAAATTCAT 57.500 40.909 14.67 0.00 37.57 2.57
1806 2045 3.717400 AGAGCATGTACGTGGAGTATG 57.283 47.619 16.68 0.17 37.69 2.39
1836 2086 1.051812 AGACCATCCTTGATAGGGCG 58.948 55.000 0.00 0.00 42.26 6.13
1842 2092 3.181461 CCATCCTTGATAGGGCGGATATC 60.181 52.174 0.00 0.00 42.26 1.63
1847 2097 4.339814 CCTTGATAGGGCGGATATCTAGTC 59.660 50.000 2.05 0.00 37.94 2.59
1855 2105 2.891580 GCGGATATCTAGTCCAGGACAA 59.108 50.000 22.31 7.07 35.41 3.18
1950 2200 2.095263 GTGTGGTGTGTATTGATGTGGC 60.095 50.000 0.00 0.00 0.00 5.01
2026 2280 5.455612 CGGGGGTGATTACATATTTGTAGGT 60.456 44.000 0.00 0.00 39.43 3.08
2165 3875 8.100135 AGAAATTGAGAACATAATCTCCTCCT 57.900 34.615 2.16 0.00 44.27 3.69
2207 3917 2.057137 ACCAGAAAAGCTTGCAGTGA 57.943 45.000 0.00 0.00 0.00 3.41
2213 3923 0.890542 AAAGCTTGCAGTGATCCGCA 60.891 50.000 0.00 0.00 36.05 5.69
2217 3927 2.543578 TTGCAGTGATCCGCAAGAC 58.456 52.632 9.50 0.00 42.93 3.01
2219 3929 2.456119 GCAGTGATCCGCAAGACCG 61.456 63.158 0.00 0.00 43.02 4.79
2242 3952 1.026718 AGGTTGCCGAGCACAATAGC 61.027 55.000 0.00 0.00 38.71 2.97
2272 3984 7.201812 GCTATAAACATCATCAACCATGTTGGA 60.202 37.037 7.08 0.00 41.42 3.53
2327 4039 0.464735 TTACGCACCACCAGCACTTT 60.465 50.000 0.00 0.00 0.00 2.66
2349 4061 2.349532 GCGGTTGCAGTTGTAAAGAGAC 60.350 50.000 0.00 0.00 42.15 3.36
2417 4129 4.787280 CTCCTCCTCCCCGCCAGT 62.787 72.222 0.00 0.00 0.00 4.00
2541 4259 3.504806 TCCCCCGGCCTCGAGATA 61.505 66.667 15.71 0.00 39.00 1.98
2573 4466 3.316573 GAGGCCGGACCACCTTCTG 62.317 68.421 1.76 0.00 43.14 3.02
2708 4601 2.430694 CCGATCCTCACATGGTTAGTGA 59.569 50.000 0.00 0.00 43.23 3.41
2713 4606 3.901222 TCCTCACATGGTTAGTGACTTGA 59.099 43.478 0.00 0.00 40.80 3.02
2714 4607 4.532126 TCCTCACATGGTTAGTGACTTGAT 59.468 41.667 0.00 0.00 40.80 2.57
2715 4608 4.633126 CCTCACATGGTTAGTGACTTGATG 59.367 45.833 0.00 0.00 40.80 3.07
2716 4609 4.578871 TCACATGGTTAGTGACTTGATGG 58.421 43.478 0.00 0.00 40.80 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.110578 GCAGGGATTAATGGCAAGGTT 58.889 47.619 0.00 0.00 0.00 3.50
1 2 1.689258 GGCAGGGATTAATGGCAAGGT 60.689 52.381 0.00 0.00 41.35 3.50
3 4 1.043022 GGGCAGGGATTAATGGCAAG 58.957 55.000 0.00 0.00 43.35 4.01
4 5 0.636101 AGGGCAGGGATTAATGGCAA 59.364 50.000 0.00 0.00 43.35 4.52
5 6 1.528600 TAGGGCAGGGATTAATGGCA 58.471 50.000 0.00 0.00 43.35 4.92
6 7 2.675658 TTAGGGCAGGGATTAATGGC 57.324 50.000 0.00 0.00 41.01 4.40
7 8 3.434309 CCATTAGGGCAGGGATTAATGG 58.566 50.000 7.49 7.49 43.37 3.16
8 9 4.387026 TCCATTAGGGCAGGGATTAATG 57.613 45.455 0.00 0.00 36.21 1.90
9 10 6.355094 CCATATCCATTAGGGCAGGGATTAAT 60.355 42.308 0.00 0.00 40.49 1.40
10 11 5.044179 CCATATCCATTAGGGCAGGGATTAA 60.044 44.000 0.00 0.00 40.49 1.40
11 12 4.478317 CCATATCCATTAGGGCAGGGATTA 59.522 45.833 0.00 0.00 40.49 1.75
12 13 3.270433 CCATATCCATTAGGGCAGGGATT 59.730 47.826 0.00 0.00 40.49 3.01
13 14 2.854967 CCATATCCATTAGGGCAGGGAT 59.145 50.000 0.00 0.00 42.55 3.85
14 15 2.157864 TCCATATCCATTAGGGCAGGGA 60.158 50.000 0.00 0.00 36.21 4.20
15 16 2.025887 GTCCATATCCATTAGGGCAGGG 60.026 54.545 0.00 0.00 36.21 4.45
16 17 2.355108 CGTCCATATCCATTAGGGCAGG 60.355 54.545 0.00 0.00 36.21 4.85
17 18 2.303022 ACGTCCATATCCATTAGGGCAG 59.697 50.000 0.00 0.00 36.21 4.85
18 19 2.038426 CACGTCCATATCCATTAGGGCA 59.962 50.000 0.00 0.00 36.21 5.36
19 20 2.615493 CCACGTCCATATCCATTAGGGC 60.615 54.545 0.00 0.00 36.21 5.19
20 21 2.903784 TCCACGTCCATATCCATTAGGG 59.096 50.000 0.00 0.00 34.83 3.53
21 22 3.617531 GCTCCACGTCCATATCCATTAGG 60.618 52.174 0.00 0.00 0.00 2.69
22 23 3.589988 GCTCCACGTCCATATCCATTAG 58.410 50.000 0.00 0.00 0.00 1.73
23 24 2.029380 CGCTCCACGTCCATATCCATTA 60.029 50.000 0.00 0.00 36.87 1.90
24 25 1.270305 CGCTCCACGTCCATATCCATT 60.270 52.381 0.00 0.00 36.87 3.16
25 26 0.318441 CGCTCCACGTCCATATCCAT 59.682 55.000 0.00 0.00 36.87 3.41
26 27 1.739667 CGCTCCACGTCCATATCCA 59.260 57.895 0.00 0.00 36.87 3.41
27 28 1.664965 GCGCTCCACGTCCATATCC 60.665 63.158 0.00 0.00 46.11 2.59
28 29 0.941463 CTGCGCTCCACGTCCATATC 60.941 60.000 9.73 0.00 46.11 1.63
29 30 1.068083 CTGCGCTCCACGTCCATAT 59.932 57.895 9.73 0.00 46.11 1.78
30 31 2.494445 CTGCGCTCCACGTCCATA 59.506 61.111 9.73 0.00 46.11 2.74
38 39 2.796483 AATAACGTGGCTGCGCTCCA 62.796 55.000 16.15 16.15 34.88 3.86
39 40 2.106683 AATAACGTGGCTGCGCTCC 61.107 57.895 9.73 10.83 34.88 4.70
40 41 1.060937 CAATAACGTGGCTGCGCTC 59.939 57.895 9.73 0.00 34.88 5.03
41 42 2.398554 CCAATAACGTGGCTGCGCT 61.399 57.895 9.73 0.00 34.88 5.92
42 43 1.363145 TACCAATAACGTGGCTGCGC 61.363 55.000 0.00 0.00 43.00 6.09
43 44 1.295792 ATACCAATAACGTGGCTGCG 58.704 50.000 0.00 0.93 43.00 5.18
44 45 2.943033 AGAATACCAATAACGTGGCTGC 59.057 45.455 0.00 0.00 43.00 5.25
45 46 3.560068 GGAGAATACCAATAACGTGGCTG 59.440 47.826 0.00 0.00 43.00 4.85
46 47 3.454812 AGGAGAATACCAATAACGTGGCT 59.545 43.478 0.00 0.00 43.00 4.75
47 48 3.805207 AGGAGAATACCAATAACGTGGC 58.195 45.455 0.00 0.00 43.00 5.01
48 49 6.753107 AAAAGGAGAATACCAATAACGTGG 57.247 37.500 0.00 0.00 44.92 4.94
72 73 6.944290 ACATGAATCATGACTCCTGAGAAAAA 59.056 34.615 27.86 0.00 43.81 1.94
73 74 6.373495 CACATGAATCATGACTCCTGAGAAAA 59.627 38.462 27.86 0.00 43.81 2.29
74 75 5.878669 CACATGAATCATGACTCCTGAGAAA 59.121 40.000 27.86 0.00 43.81 2.52
75 76 5.046087 ACACATGAATCATGACTCCTGAGAA 60.046 40.000 27.86 0.00 43.81 2.87
76 77 4.468868 ACACATGAATCATGACTCCTGAGA 59.531 41.667 27.86 0.00 43.81 3.27
77 78 4.571176 CACACATGAATCATGACTCCTGAG 59.429 45.833 27.86 10.14 43.81 3.35
78 79 4.019950 ACACACATGAATCATGACTCCTGA 60.020 41.667 27.86 0.00 43.81 3.86
79 80 4.094442 CACACACATGAATCATGACTCCTG 59.906 45.833 27.86 17.43 43.81 3.86
80 81 4.259356 CACACACATGAATCATGACTCCT 58.741 43.478 27.86 3.89 43.81 3.69
81 82 4.005650 ACACACACATGAATCATGACTCC 58.994 43.478 27.86 0.00 43.81 3.85
82 83 4.453478 ACACACACACATGAATCATGACTC 59.547 41.667 27.86 0.00 43.81 3.36
83 84 4.214758 CACACACACACATGAATCATGACT 59.785 41.667 27.86 10.37 43.81 3.41
84 85 4.023792 ACACACACACACATGAATCATGAC 60.024 41.667 27.86 0.00 43.81 3.06
85 86 4.023878 CACACACACACACATGAATCATGA 60.024 41.667 27.86 0.00 43.81 3.07
86 87 4.223659 CACACACACACACATGAATCATG 58.776 43.478 20.58 20.58 46.18 3.07
87 88 3.884693 ACACACACACACACATGAATCAT 59.115 39.130 0.00 0.00 0.00 2.45
88 89 3.065095 CACACACACACACACATGAATCA 59.935 43.478 0.00 0.00 0.00 2.57
89 90 3.065233 ACACACACACACACACATGAATC 59.935 43.478 0.00 0.00 0.00 2.52
90 91 3.016031 ACACACACACACACACATGAAT 58.984 40.909 0.00 0.00 0.00 2.57
91 92 2.431454 ACACACACACACACACATGAA 58.569 42.857 0.00 0.00 0.00 2.57
92 93 2.106477 ACACACACACACACACATGA 57.894 45.000 0.00 0.00 0.00 3.07
93 94 5.861222 ATATACACACACACACACACATG 57.139 39.130 0.00 0.00 0.00 3.21
116 117 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
117 118 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
118 119 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
119 120 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
120 121 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
121 122 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
122 123 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
123 124 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
124 125 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
125 126 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
126 127 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
127 128 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
128 129 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
129 130 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
130 131 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
131 132 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
132 133 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
133 134 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
134 135 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
135 136 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
136 137 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
137 138 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
138 139 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
139 140 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
140 141 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
141 142 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
142 143 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
143 144 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
144 145 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
145 146 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
146 147 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
147 148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
148 149 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
149 150 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
150 151 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
151 152 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
152 153 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
153 154 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
154 155 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
155 156 1.581727 GGCACACACACACACACACA 61.582 55.000 0.00 0.00 0.00 3.72
156 157 1.136565 GGCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
157 158 1.002746 AGGCACACACACACACACA 60.003 52.632 0.00 0.00 0.00 3.72
158 159 1.714899 GGAGGCACACACACACACAC 61.715 60.000 0.00 0.00 0.00 3.82
159 160 1.451207 GGAGGCACACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
160 161 2.534019 CGGAGGCACACACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
161 162 2.203001 CGGAGGCACACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
162 163 1.956170 CTCGGAGGCACACACACAC 60.956 63.158 0.00 0.00 0.00 3.82
163 164 2.421314 CTCGGAGGCACACACACA 59.579 61.111 0.00 0.00 0.00 3.72
164 165 2.357517 CCTCGGAGGCACACACAC 60.358 66.667 11.83 0.00 0.00 3.82
165 166 3.625897 CCCTCGGAGGCACACACA 61.626 66.667 18.91 0.00 32.73 3.72
184 185 2.203832 TGCTCTGCCACTGAGGGA 60.204 61.111 4.04 0.00 38.09 4.20
185 186 2.241479 CTCTGCTCTGCCACTGAGGG 62.241 65.000 4.04 0.00 38.09 4.30
186 187 1.218585 CTCTGCTCTGCCACTGAGG 59.781 63.158 4.04 0.00 41.84 3.86
187 188 1.448189 GCTCTGCTCTGCCACTGAG 60.448 63.158 0.00 0.00 35.61 3.35
188 189 1.761500 TTGCTCTGCTCTGCCACTGA 61.761 55.000 0.00 0.00 0.00 3.41
189 190 0.887836 TTTGCTCTGCTCTGCCACTG 60.888 55.000 0.00 0.00 0.00 3.66
190 191 0.179009 TTTTGCTCTGCTCTGCCACT 60.179 50.000 0.00 0.00 0.00 4.00
191 192 0.240411 CTTTTGCTCTGCTCTGCCAC 59.760 55.000 0.00 0.00 0.00 5.01
192 193 0.109153 TCTTTTGCTCTGCTCTGCCA 59.891 50.000 0.00 0.00 0.00 4.92
193 194 0.803740 CTCTTTTGCTCTGCTCTGCC 59.196 55.000 0.00 0.00 0.00 4.85
194 195 0.168568 GCTCTTTTGCTCTGCTCTGC 59.831 55.000 0.00 0.00 0.00 4.26
195 196 1.465387 CTGCTCTTTTGCTCTGCTCTG 59.535 52.381 0.00 0.00 0.00 3.35
196 197 1.072015 ACTGCTCTTTTGCTCTGCTCT 59.928 47.619 0.00 0.00 0.00 4.09
197 198 1.197264 CACTGCTCTTTTGCTCTGCTC 59.803 52.381 0.00 0.00 0.00 4.26
198 199 1.236628 CACTGCTCTTTTGCTCTGCT 58.763 50.000 0.00 0.00 0.00 4.24
199 200 0.386985 GCACTGCTCTTTTGCTCTGC 60.387 55.000 0.00 0.00 33.26 4.26
200 201 1.236628 AGCACTGCTCTTTTGCTCTG 58.763 50.000 0.00 0.00 43.14 3.35
201 202 2.224378 TGTAGCACTGCTCTTTTGCTCT 60.224 45.455 6.86 0.00 43.14 4.09
202 203 2.096019 GTGTAGCACTGCTCTTTTGCTC 60.096 50.000 6.86 0.00 43.14 4.26
204 205 1.603802 TGTGTAGCACTGCTCTTTTGC 59.396 47.619 6.86 0.00 40.44 3.68
205 206 2.348872 CGTGTGTAGCACTGCTCTTTTG 60.349 50.000 6.86 0.00 45.57 2.44
206 207 1.867233 CGTGTGTAGCACTGCTCTTTT 59.133 47.619 6.86 0.00 45.57 2.27
207 208 1.068588 TCGTGTGTAGCACTGCTCTTT 59.931 47.619 6.86 0.00 45.57 2.52
208 209 0.673985 TCGTGTGTAGCACTGCTCTT 59.326 50.000 6.86 0.00 45.57 2.85
209 210 0.891373 ATCGTGTGTAGCACTGCTCT 59.109 50.000 6.86 0.00 45.57 4.09
210 211 2.159366 AGTATCGTGTGTAGCACTGCTC 60.159 50.000 6.86 0.26 45.57 4.26
211 212 1.819288 AGTATCGTGTGTAGCACTGCT 59.181 47.619 8.95 8.95 45.57 4.24
212 213 1.920574 CAGTATCGTGTGTAGCACTGC 59.079 52.381 0.00 0.00 45.57 4.40
213 214 3.217599 ACAGTATCGTGTGTAGCACTG 57.782 47.619 0.00 0.00 45.57 3.66
214 215 3.181513 CGTACAGTATCGTGTGTAGCACT 60.182 47.826 0.00 0.00 45.57 4.40
215 216 3.096461 CGTACAGTATCGTGTGTAGCAC 58.904 50.000 0.00 0.00 44.36 4.40
216 217 2.476686 GCGTACAGTATCGTGTGTAGCA 60.477 50.000 0.00 0.00 29.78 3.49
217 218 2.107178 GCGTACAGTATCGTGTGTAGC 58.893 52.381 0.00 0.00 29.78 3.58
218 219 3.096461 GTGCGTACAGTATCGTGTGTAG 58.904 50.000 0.00 0.00 29.78 2.74
219 220 2.474361 CGTGCGTACAGTATCGTGTGTA 60.474 50.000 4.09 0.00 31.46 2.90
220 221 1.726892 CGTGCGTACAGTATCGTGTGT 60.727 52.381 4.09 0.00 31.46 3.72
221 222 0.905175 CGTGCGTACAGTATCGTGTG 59.095 55.000 4.09 0.00 31.46 3.82
222 223 0.798159 TCGTGCGTACAGTATCGTGT 59.202 50.000 4.09 0.00 34.21 4.49
223 224 2.101053 ATCGTGCGTACAGTATCGTG 57.899 50.000 4.09 0.00 0.00 4.35
224 225 2.096335 TGAATCGTGCGTACAGTATCGT 59.904 45.455 4.09 0.00 0.00 3.73
225 226 2.711885 TGAATCGTGCGTACAGTATCG 58.288 47.619 4.09 0.00 0.00 2.92
226 227 3.121328 GCATGAATCGTGCGTACAGTATC 60.121 47.826 11.98 0.00 36.64 2.24
227 228 2.794910 GCATGAATCGTGCGTACAGTAT 59.205 45.455 11.98 0.00 36.64 2.12
228 229 2.190161 GCATGAATCGTGCGTACAGTA 58.810 47.619 11.98 0.00 36.64 2.74
229 230 0.999406 GCATGAATCGTGCGTACAGT 59.001 50.000 11.98 0.00 36.64 3.55
230 231 3.786955 GCATGAATCGTGCGTACAG 57.213 52.632 11.98 0.00 36.64 2.74
236 237 0.165727 TTGTCGTGCATGAATCGTGC 59.834 50.000 19.69 19.69 45.53 5.34
237 238 1.194322 TGTTGTCGTGCATGAATCGTG 59.806 47.619 10.93 0.00 0.00 4.35
238 239 1.460743 CTGTTGTCGTGCATGAATCGT 59.539 47.619 10.93 0.00 0.00 3.73
239 240 1.726248 TCTGTTGTCGTGCATGAATCG 59.274 47.619 10.93 0.00 0.00 3.34
240 241 4.260375 GGTATCTGTTGTCGTGCATGAATC 60.260 45.833 10.93 4.86 0.00 2.52
241 242 3.623060 GGTATCTGTTGTCGTGCATGAAT 59.377 43.478 10.93 1.86 0.00 2.57
242 243 3.000041 GGTATCTGTTGTCGTGCATGAA 59.000 45.455 10.93 0.00 0.00 2.57
243 244 2.233676 AGGTATCTGTTGTCGTGCATGA 59.766 45.455 3.97 3.97 0.00 3.07
244 245 2.349580 CAGGTATCTGTTGTCGTGCATG 59.650 50.000 0.00 0.00 36.30 4.06
245 246 2.621338 CAGGTATCTGTTGTCGTGCAT 58.379 47.619 0.00 0.00 36.30 3.96
246 247 2.078849 CAGGTATCTGTTGTCGTGCA 57.921 50.000 0.00 0.00 36.30 4.57
256 257 1.539065 GCATGGACGGACAGGTATCTG 60.539 57.143 0.04 0.04 46.10 2.90
257 258 0.753262 GCATGGACGGACAGGTATCT 59.247 55.000 0.00 0.00 0.00 1.98
258 259 0.464036 TGCATGGACGGACAGGTATC 59.536 55.000 0.00 0.00 0.00 2.24
259 260 1.131638 ATGCATGGACGGACAGGTAT 58.868 50.000 0.00 0.00 0.00 2.73
260 261 0.177836 CATGCATGGACGGACAGGTA 59.822 55.000 19.40 0.00 0.00 3.08
261 262 1.078214 CATGCATGGACGGACAGGT 60.078 57.895 19.40 0.00 0.00 4.00
262 263 0.177836 TACATGCATGGACGGACAGG 59.822 55.000 29.41 1.63 0.00 4.00
263 264 1.575244 CTACATGCATGGACGGACAG 58.425 55.000 29.41 5.40 0.00 3.51
264 265 0.461870 GCTACATGCATGGACGGACA 60.462 55.000 29.41 5.67 42.31 4.02
265 266 2.311294 GCTACATGCATGGACGGAC 58.689 57.895 29.41 9.72 42.31 4.79
266 267 4.855105 GCTACATGCATGGACGGA 57.145 55.556 29.41 9.11 42.31 4.69
275 276 0.107993 TGCTGGACTCTGCTACATGC 60.108 55.000 0.00 0.00 43.25 4.06
276 277 1.479730 TCTGCTGGACTCTGCTACATG 59.520 52.381 0.00 0.00 38.45 3.21
277 278 1.480137 GTCTGCTGGACTCTGCTACAT 59.520 52.381 3.73 0.00 41.46 2.29
278 279 0.891373 GTCTGCTGGACTCTGCTACA 59.109 55.000 3.73 0.00 41.46 2.74
279 280 0.174617 GGTCTGCTGGACTCTGCTAC 59.825 60.000 9.50 0.00 43.97 3.58
280 281 0.251787 TGGTCTGCTGGACTCTGCTA 60.252 55.000 9.50 0.00 43.97 3.49
281 282 0.908656 ATGGTCTGCTGGACTCTGCT 60.909 55.000 9.50 0.00 43.97 4.24
282 283 0.035630 AATGGTCTGCTGGACTCTGC 60.036 55.000 9.50 0.00 43.97 4.26
283 284 2.082231 CAAATGGTCTGCTGGACTCTG 58.918 52.381 9.50 1.20 43.97 3.35
284 285 1.980765 TCAAATGGTCTGCTGGACTCT 59.019 47.619 9.50 0.00 43.97 3.24
285 286 2.479566 TCAAATGGTCTGCTGGACTC 57.520 50.000 9.50 2.66 43.97 3.36
286 287 2.356535 GGATCAAATGGTCTGCTGGACT 60.357 50.000 9.50 0.00 43.97 3.85
287 288 2.019984 GGATCAAATGGTCTGCTGGAC 58.980 52.381 0.00 2.54 43.79 4.02
288 289 1.064463 GGGATCAAATGGTCTGCTGGA 60.064 52.381 0.00 0.00 0.00 3.86
289 290 1.396653 GGGATCAAATGGTCTGCTGG 58.603 55.000 0.00 0.00 0.00 4.85
290 291 1.019673 CGGGATCAAATGGTCTGCTG 58.980 55.000 0.00 0.00 0.00 4.41
291 292 0.749454 GCGGGATCAAATGGTCTGCT 60.749 55.000 0.00 0.00 0.00 4.24
292 293 1.031571 TGCGGGATCAAATGGTCTGC 61.032 55.000 0.00 5.03 0.00 4.26
293 294 1.605710 GATGCGGGATCAAATGGTCTG 59.394 52.381 4.47 0.00 0.00 3.51
294 295 1.811558 CGATGCGGGATCAAATGGTCT 60.812 52.381 10.19 0.00 0.00 3.85
295 296 0.588252 CGATGCGGGATCAAATGGTC 59.412 55.000 10.19 0.00 0.00 4.02
296 297 0.107214 ACGATGCGGGATCAAATGGT 60.107 50.000 10.19 0.00 0.00 3.55
297 298 1.002468 GAACGATGCGGGATCAAATGG 60.002 52.381 10.19 0.00 0.00 3.16
298 299 1.670295 TGAACGATGCGGGATCAAATG 59.330 47.619 10.19 0.00 0.00 2.32
299 300 2.036958 TGAACGATGCGGGATCAAAT 57.963 45.000 10.19 0.00 0.00 2.32
300 301 1.939934 GATGAACGATGCGGGATCAAA 59.060 47.619 10.19 0.00 0.00 2.69
301 302 1.138859 AGATGAACGATGCGGGATCAA 59.861 47.619 10.19 0.00 0.00 2.57
302 303 0.752658 AGATGAACGATGCGGGATCA 59.247 50.000 10.19 0.00 0.00 2.92
303 304 1.143305 CAGATGAACGATGCGGGATC 58.857 55.000 0.00 0.00 0.00 3.36
304 305 0.465705 ACAGATGAACGATGCGGGAT 59.534 50.000 0.00 0.00 0.00 3.85
305 306 0.179111 GACAGATGAACGATGCGGGA 60.179 55.000 0.00 0.00 0.00 5.14
306 307 1.482621 CGACAGATGAACGATGCGGG 61.483 60.000 0.00 0.00 0.00 6.13
307 308 0.802222 ACGACAGATGAACGATGCGG 60.802 55.000 0.00 0.00 0.00 5.69
308 309 0.295763 CACGACAGATGAACGATGCG 59.704 55.000 0.00 0.00 0.00 4.73
309 310 0.025513 GCACGACAGATGAACGATGC 59.974 55.000 0.00 0.00 0.00 3.91
310 311 1.349234 TGCACGACAGATGAACGATG 58.651 50.000 0.00 0.00 0.00 3.84
311 312 2.299993 ATGCACGACAGATGAACGAT 57.700 45.000 0.00 0.00 0.00 3.73
312 313 2.163613 AGTATGCACGACAGATGAACGA 59.836 45.455 0.00 0.00 0.00 3.85
313 314 2.279921 CAGTATGCACGACAGATGAACG 59.720 50.000 0.00 0.00 0.00 3.95
314 315 3.254060 ACAGTATGCACGACAGATGAAC 58.746 45.455 0.00 0.00 42.53 3.18
315 316 3.592898 ACAGTATGCACGACAGATGAA 57.407 42.857 0.00 0.00 42.53 2.57
316 317 3.253230 CAACAGTATGCACGACAGATGA 58.747 45.455 0.00 0.00 42.53 2.92
317 318 2.995939 ACAACAGTATGCACGACAGATG 59.004 45.455 0.00 0.00 42.53 2.90
318 319 3.254060 GACAACAGTATGCACGACAGAT 58.746 45.455 0.00 0.00 42.53 2.90
319 320 2.672714 GACAACAGTATGCACGACAGA 58.327 47.619 0.00 0.00 42.53 3.41
320 321 1.386748 CGACAACAGTATGCACGACAG 59.613 52.381 0.00 0.00 42.53 3.51
321 322 1.269361 ACGACAACAGTATGCACGACA 60.269 47.619 0.00 0.00 42.53 4.35
322 323 1.385743 GACGACAACAGTATGCACGAC 59.614 52.381 0.00 0.00 42.53 4.34
323 324 1.667756 GGACGACAACAGTATGCACGA 60.668 52.381 0.00 0.00 42.53 4.35
324 325 0.713883 GGACGACAACAGTATGCACG 59.286 55.000 0.00 0.00 42.53 5.34
325 326 0.713883 CGGACGACAACAGTATGCAC 59.286 55.000 0.00 0.00 42.53 4.57
326 327 1.011968 GCGGACGACAACAGTATGCA 61.012 55.000 0.00 0.00 42.53 3.96
327 328 1.708027 GCGGACGACAACAGTATGC 59.292 57.895 0.00 0.00 42.53 3.14
328 329 1.988409 CGCGGACGACAACAGTATG 59.012 57.895 0.00 0.00 43.93 2.39
329 330 1.804326 GCGCGGACGACAACAGTAT 60.804 57.895 8.83 0.00 43.93 2.12
330 331 2.429571 GCGCGGACGACAACAGTA 60.430 61.111 8.83 0.00 43.93 2.74
331 332 4.578898 TGCGCGGACGACAACAGT 62.579 61.111 8.83 0.00 43.93 3.55
332 333 3.767230 CTGCGCGGACGACAACAG 61.767 66.667 11.90 0.00 43.93 3.16
344 345 3.184683 CTCTCGGAACTGCTGCGC 61.185 66.667 0.00 0.00 39.03 6.09
345 346 3.184683 GCTCTCGGAACTGCTGCG 61.185 66.667 0.00 0.00 40.85 5.18
346 347 1.230635 TTTGCTCTCGGAACTGCTGC 61.231 55.000 0.00 0.00 0.00 5.25
347 348 1.229428 TTTTGCTCTCGGAACTGCTG 58.771 50.000 0.00 0.00 0.00 4.41
348 349 1.808945 CATTTTGCTCTCGGAACTGCT 59.191 47.619 0.00 0.00 0.00 4.24
349 350 1.730446 GCATTTTGCTCTCGGAACTGC 60.730 52.381 0.00 0.00 40.96 4.40
350 351 1.536766 TGCATTTTGCTCTCGGAACTG 59.463 47.619 0.75 0.00 45.31 3.16
351 352 1.808945 CTGCATTTTGCTCTCGGAACT 59.191 47.619 0.75 0.00 45.31 3.01
352 353 1.537202 ACTGCATTTTGCTCTCGGAAC 59.463 47.619 0.75 0.00 45.31 3.62
353 354 1.896220 ACTGCATTTTGCTCTCGGAA 58.104 45.000 0.75 0.00 45.31 4.30
354 355 2.028112 AGTACTGCATTTTGCTCTCGGA 60.028 45.455 0.00 0.00 45.31 4.55
355 356 2.350522 AGTACTGCATTTTGCTCTCGG 58.649 47.619 0.00 0.00 45.31 4.63
356 357 3.000674 CGTAGTACTGCATTTTGCTCTCG 60.001 47.826 11.70 0.00 45.31 4.04
357 358 3.242123 GCGTAGTACTGCATTTTGCTCTC 60.242 47.826 11.70 0.00 45.31 3.20
562 603 3.751698 AGTCGACTATTTGGAAACCTTGC 59.248 43.478 18.46 0.00 0.00 4.01
586 630 4.932200 GTGTCACTCTAAAAGACCATCCTG 59.068 45.833 0.00 0.00 0.00 3.86
590 634 6.114187 TCATGTGTCACTCTAAAAGACCAT 57.886 37.500 4.27 0.00 0.00 3.55
615 659 3.587797 TCGTTTGACCTAGCTACTTGG 57.412 47.619 0.00 0.00 32.84 3.61
740 884 3.068560 CCTGAAACGAAAATCCACCGTA 58.931 45.455 0.00 0.00 35.28 4.02
741 885 1.877443 CCTGAAACGAAAATCCACCGT 59.123 47.619 0.00 0.00 38.24 4.83
742 886 2.147958 TCCTGAAACGAAAATCCACCG 58.852 47.619 0.00 0.00 0.00 4.94
744 888 2.552315 TGCTCCTGAAACGAAAATCCAC 59.448 45.455 0.00 0.00 0.00 4.02
746 890 3.565516 GTTGCTCCTGAAACGAAAATCC 58.434 45.455 0.00 0.00 0.00 3.01
806 950 3.007398 CCTCCTCCATGATGTAAGTAGCC 59.993 52.174 0.00 0.00 0.00 3.93
907 1051 2.503920 ATACGGCACCGAAGATACAC 57.496 50.000 17.40 0.00 42.83 2.90
908 1052 2.542205 CGAATACGGCACCGAAGATACA 60.542 50.000 17.40 0.00 42.83 2.29
909 1053 2.049228 CGAATACGGCACCGAAGATAC 58.951 52.381 17.40 1.44 42.83 2.24
919 1094 0.101759 GGCAGTACTCGAATACGGCA 59.898 55.000 25.82 0.00 44.92 5.69
1020 1196 1.370064 GTTGTACAGGTCGTGGGCT 59.630 57.895 0.00 0.00 0.00 5.19
1068 1244 1.961277 CTGGGTCCGTCTGCAACAC 60.961 63.158 0.00 0.00 0.00 3.32
1071 1247 1.371183 CTTCTGGGTCCGTCTGCAA 59.629 57.895 0.00 0.00 0.00 4.08
1356 1532 1.827969 GTGCAGTAGGACCTCATGACT 59.172 52.381 0.00 0.00 0.00 3.41
1377 1553 1.071542 TGGAACAGTTTCTCCATGCGA 59.928 47.619 0.00 0.00 36.79 5.10
1410 1586 2.687200 TACAGCTCCGGCACCCAT 60.687 61.111 0.00 0.00 41.70 4.00
1452 1628 2.145397 AGTAGTCGATGAAGCCCTGA 57.855 50.000 0.00 0.00 0.00 3.86
1482 1658 2.948720 GCGCTCCTCCACCTTCTGT 61.949 63.158 0.00 0.00 0.00 3.41
1665 1841 1.203523 CTGAGCTTTAGGTCGCTGTCT 59.796 52.381 4.67 0.00 44.88 3.41
1689 1865 3.901844 CTCCGGGGTAGATGAATTTCCTA 59.098 47.826 0.00 0.00 0.00 2.94
1700 1876 0.188587 ATCTCATGCTCCGGGGTAGA 59.811 55.000 1.62 1.35 0.00 2.59
1806 2045 6.656632 TCAAGGATGGTCTAGTATGATCAC 57.343 41.667 0.00 0.00 29.00 3.06
1836 2086 3.259625 GCCTTGTCCTGGACTAGATATCC 59.740 52.174 31.19 14.71 37.54 2.59
1842 2092 0.107945 GCTGCCTTGTCCTGGACTAG 60.108 60.000 25.32 25.32 35.74 2.57
1847 2097 2.633509 GCTTGCTGCCTTGTCCTGG 61.634 63.158 0.00 0.00 35.15 4.45
1870 2120 2.108168 CGGTCCCTAAGATTGGTCTCA 58.892 52.381 0.00 0.00 32.15 3.27
1882 2132 2.752829 CGGTATAAACCCTCGGTCCCTA 60.753 54.545 0.00 0.00 43.54 3.53
1888 2138 1.536709 CGAACCGGTATAAACCCTCGG 60.537 57.143 8.00 0.00 43.54 4.63
1913 2163 2.058595 CACTGGACGTCCCCCTAGG 61.059 68.421 31.19 15.68 34.29 3.02
2140 3850 8.100135 AGGAGGAGATTATGTTCTCAATTTCT 57.900 34.615 0.00 0.00 43.28 2.52
2185 3895 3.951037 TCACTGCAAGCTTTTCTGGTTTA 59.049 39.130 0.00 0.00 37.60 2.01
2207 3917 1.079127 CCTGTTCGGTCTTGCGGAT 60.079 57.895 0.00 0.00 0.00 4.18
2217 3927 3.423154 GCTCGGCAACCTGTTCGG 61.423 66.667 0.00 0.00 39.35 4.30
2219 3929 1.444119 TTGTGCTCGGCAACCTGTTC 61.444 55.000 0.00 0.00 41.47 3.18
2242 3952 9.006839 ACATGGTTGATGATGTTTATAGCTATG 57.993 33.333 16.77 0.00 35.80 2.23
2279 3991 2.743664 CGAAGTGCTCAACAATGGATCA 59.256 45.455 0.00 0.00 0.00 2.92
2349 4061 4.723309 AGAAATGCCCTAAGAAGCTATGG 58.277 43.478 0.00 0.00 0.00 2.74
2638 4531 1.638133 CAGAGCATGAAGACGGACAG 58.362 55.000 0.00 0.00 0.00 3.51
2688 4581 3.131223 AGTCACTAACCATGTGAGGATCG 59.869 47.826 0.00 0.00 43.90 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.