Multiple sequence alignment - TraesCS6B01G405400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G405400 chr6B 100.000 4494 0 0 1 4494 680700399 680704892 0.000000e+00 8299.0
1 TraesCS6B01G405400 chr6B 86.463 916 104 12 852 1752 680531887 680530977 0.000000e+00 987.0
2 TraesCS6B01G405400 chr6B 79.338 997 136 41 1742 2689 680530806 680529831 1.760000e-178 636.0
3 TraesCS6B01G405400 chr6B 73.487 909 209 18 966 1861 680931317 680932206 9.380000e-82 315.0
4 TraesCS6B01G405400 chr6B 75.880 568 100 21 2225 2783 681206221 681206760 5.770000e-64 255.0
5 TraesCS6B01G405400 chr6B 74.677 387 92 5 974 1357 680988837 680989220 2.780000e-37 167.0
6 TraesCS6B01G405400 chr6B 82.524 103 16 2 1762 1863 680800728 680800627 6.190000e-14 89.8
7 TraesCS6B01G405400 chr6D 81.447 2695 369 81 590 3201 448803671 448806317 0.000000e+00 2085.0
8 TraesCS6B01G405400 chr6D 82.174 1711 235 49 782 2454 448799132 448800810 0.000000e+00 1406.0
9 TraesCS6B01G405400 chr6D 77.849 1553 242 57 1275 2743 448818088 448819622 0.000000e+00 869.0
10 TraesCS6B01G405400 chr6D 80.610 557 86 17 2236 2776 448843792 448844342 1.160000e-110 411.0
11 TraesCS6B01G405400 chr6D 75.109 916 184 38 969 1863 449232326 449231434 5.450000e-104 388.0
12 TraesCS6B01G405400 chr6D 78.571 546 98 16 2250 2784 448891896 448892433 4.300000e-90 342.0
13 TraesCS6B01G405400 chr6D 79.909 438 67 17 2780 3203 448801246 448801676 7.310000e-78 302.0
14 TraesCS6B01G405400 chr6D 76.119 469 79 15 2223 2686 448839097 448839537 9.790000e-52 215.0
15 TraesCS6B01G405400 chr6D 80.172 232 42 4 2209 2440 449397892 449398119 2.150000e-38 171.0
16 TraesCS6B01G405400 chr6A 80.917 2421 279 69 1375 3731 594948922 594951223 0.000000e+00 1742.0
17 TraesCS6B01G405400 chr6A 82.660 1955 266 48 782 2689 594854183 594856111 0.000000e+00 1664.0
18 TraesCS6B01G405400 chr6A 82.971 1838 245 42 904 2689 594938888 594940709 0.000000e+00 1598.0
19 TraesCS6B01G405400 chr6A 90.143 771 47 7 3729 4494 594952980 594953726 0.000000e+00 976.0
20 TraesCS6B01G405400 chr6A 88.312 462 41 5 667 1125 594948451 594948902 3.950000e-150 542.0
21 TraesCS6B01G405400 chr6A 78.677 741 112 31 988 1720 594964881 594965583 6.860000e-123 451.0
22 TraesCS6B01G405400 chr6A 79.362 533 79 18 2269 2785 594965930 594966447 3.330000e-91 346.0
23 TraesCS6B01G405400 chr6A 72.199 964 204 54 929 1870 595000181 594999260 2.090000e-58 237.0
24 TraesCS6B01G405400 chr5B 89.231 585 39 11 1 562 635605289 635605872 0.000000e+00 710.0
25 TraesCS6B01G405400 chr2D 88.388 577 32 14 1 562 538273818 538273262 0.000000e+00 662.0
26 TraesCS6B01G405400 chrUn 87.835 559 45 10 32 567 68473482 68474040 6.340000e-178 634.0
27 TraesCS6B01G405400 chrUn 73.742 914 209 17 961 1861 263804632 263805527 3.350000e-86 329.0
28 TraesCS6B01G405400 chrUn 73.742 914 209 17 961 1861 289985331 289984436 3.350000e-86 329.0
29 TraesCS6B01G405400 chr7D 86.587 589 48 12 1 568 630912008 630912586 4.940000e-174 621.0
30 TraesCS6B01G405400 chr3D 93.750 192 12 0 334 525 323311526 323311335 5.690000e-74 289.0
31 TraesCS6B01G405400 chr3D 100.000 39 0 0 524 562 323265843 323265805 6.240000e-09 73.1
32 TraesCS6B01G405400 chr3D 97.436 39 1 0 524 562 323265235 323265197 2.900000e-07 67.6
33 TraesCS6B01G405400 chr5A 83.200 125 18 2 2567 2688 649431361 649431237 1.320000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G405400 chr6B 680700399 680704892 4493 False 8299.000000 8299 100.000000 1 4494 1 chr6B.!!$F1 4493
1 TraesCS6B01G405400 chr6B 680529831 680531887 2056 True 811.500000 987 82.900500 852 2689 2 chr6B.!!$R2 1837
2 TraesCS6B01G405400 chr6B 680931317 680932206 889 False 315.000000 315 73.487000 966 1861 1 chr6B.!!$F2 895
3 TraesCS6B01G405400 chr6B 681206221 681206760 539 False 255.000000 255 75.880000 2225 2783 1 chr6B.!!$F4 558
4 TraesCS6B01G405400 chr6D 448799132 448806317 7185 False 1264.333333 2085 81.176667 590 3203 3 chr6D.!!$F6 2613
5 TraesCS6B01G405400 chr6D 448818088 448819622 1534 False 869.000000 869 77.849000 1275 2743 1 chr6D.!!$F1 1468
6 TraesCS6B01G405400 chr6D 448843792 448844342 550 False 411.000000 411 80.610000 2236 2776 1 chr6D.!!$F3 540
7 TraesCS6B01G405400 chr6D 449231434 449232326 892 True 388.000000 388 75.109000 969 1863 1 chr6D.!!$R1 894
8 TraesCS6B01G405400 chr6D 448891896 448892433 537 False 342.000000 342 78.571000 2250 2784 1 chr6D.!!$F4 534
9 TraesCS6B01G405400 chr6A 594854183 594856111 1928 False 1664.000000 1664 82.660000 782 2689 1 chr6A.!!$F1 1907
10 TraesCS6B01G405400 chr6A 594938888 594940709 1821 False 1598.000000 1598 82.971000 904 2689 1 chr6A.!!$F2 1785
11 TraesCS6B01G405400 chr6A 594948451 594953726 5275 False 1086.666667 1742 86.457333 667 4494 3 chr6A.!!$F3 3827
12 TraesCS6B01G405400 chr6A 594964881 594966447 1566 False 398.500000 451 79.019500 988 2785 2 chr6A.!!$F4 1797
13 TraesCS6B01G405400 chr6A 594999260 595000181 921 True 237.000000 237 72.199000 929 1870 1 chr6A.!!$R1 941
14 TraesCS6B01G405400 chr5B 635605289 635605872 583 False 710.000000 710 89.231000 1 562 1 chr5B.!!$F1 561
15 TraesCS6B01G405400 chr2D 538273262 538273818 556 True 662.000000 662 88.388000 1 562 1 chr2D.!!$R1 561
16 TraesCS6B01G405400 chrUn 68473482 68474040 558 False 634.000000 634 87.835000 32 567 1 chrUn.!!$F1 535
17 TraesCS6B01G405400 chrUn 263804632 263805527 895 False 329.000000 329 73.742000 961 1861 1 chrUn.!!$F2 900
18 TraesCS6B01G405400 chrUn 289984436 289985331 895 True 329.000000 329 73.742000 961 1861 1 chrUn.!!$R1 900
19 TraesCS6B01G405400 chr7D 630912008 630912586 578 False 621.000000 621 86.587000 1 568 1 chr7D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 4858 0.108898 CAGGTTCGAGCTCAGGTGAG 60.109 60.0 15.40 2.37 44.75 3.51 F
1276 5256 0.110056 GTGCAAGATCGTTGCCTGTG 60.110 55.0 20.15 0.09 44.32 3.66 F
1444 5454 0.324285 CTCCCAGCACTTGAAGCTCT 59.676 55.0 0.00 0.00 41.14 4.09 F
2935 7389 0.102844 ACCACACATTGCTGTTGTGC 59.897 50.0 12.23 0.00 46.65 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 6330 0.386838 GCAAAACTGCACCTCAAGCT 59.613 50.000 0.00 0.0 34.41 3.74 R
2668 7064 1.469703 TGATGCCAATTTGCTCACGAG 59.530 47.619 2.90 0.0 0.00 4.18 R
3342 7812 1.518367 TTGTCCCCTCAAAGTGGACT 58.482 50.000 9.52 0.0 46.97 3.85 R
4280 10515 0.032403 CCCATGTGCCATTATTGCCG 59.968 55.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.348998 CTCACTGCGGCCCTCTTT 59.651 61.111 0.00 0.00 0.00 2.52
109 110 2.683475 CCTCTTTTCCCCGGCCAT 59.317 61.111 2.24 0.00 0.00 4.40
351 389 2.107953 GAGCAGATGGGAGACGGC 59.892 66.667 0.00 0.00 0.00 5.68
371 409 1.355718 GGGATGGGGAATGGAGAGCA 61.356 60.000 0.00 0.00 0.00 4.26
402 440 1.488705 AAGGGGATGAGTGGTGCGAA 61.489 55.000 0.00 0.00 0.00 4.70
505 543 2.190161 CGTAATCAAATCGAGCGGTGA 58.810 47.619 0.00 0.00 0.00 4.02
574 613 4.111375 TCGATTCCGAAAAAGAGAGGAG 57.889 45.455 0.00 0.00 42.51 3.69
575 614 3.762288 TCGATTCCGAAAAAGAGAGGAGA 59.238 43.478 0.00 0.00 42.51 3.71
577 616 4.929808 CGATTCCGAAAAAGAGAGGAGAAA 59.070 41.667 0.00 0.00 38.22 2.52
578 617 5.408604 CGATTCCGAAAAAGAGAGGAGAAAA 59.591 40.000 0.00 0.00 38.22 2.29
579 618 6.092807 CGATTCCGAAAAAGAGAGGAGAAAAT 59.907 38.462 0.00 0.00 38.22 1.82
580 619 7.277981 CGATTCCGAAAAAGAGAGGAGAAAATA 59.722 37.037 0.00 0.00 38.22 1.40
581 620 9.114952 GATTCCGAAAAAGAGAGGAGAAAATAT 57.885 33.333 0.00 0.00 33.89 1.28
582 621 8.494016 TTCCGAAAAAGAGAGGAGAAAATATC 57.506 34.615 0.00 0.00 33.89 1.63
583 622 7.620880 TCCGAAAAAGAGAGGAGAAAATATCA 58.379 34.615 0.00 0.00 0.00 2.15
584 623 8.100791 TCCGAAAAAGAGAGGAGAAAATATCAA 58.899 33.333 0.00 0.00 0.00 2.57
586 625 8.178313 CGAAAAAGAGAGGAGAAAATATCAACC 58.822 37.037 0.00 0.00 0.00 3.77
587 626 9.237187 GAAAAAGAGAGGAGAAAATATCAACCT 57.763 33.333 0.00 0.00 38.96 3.50
589 628 8.800370 AAAGAGAGGAGAAAATATCAACCTTC 57.200 34.615 0.00 0.00 37.27 3.46
590 629 6.894682 AGAGAGGAGAAAATATCAACCTTCC 58.105 40.000 0.00 0.00 37.27 3.46
591 630 5.675538 AGAGGAGAAAATATCAACCTTCCG 58.324 41.667 0.00 0.00 37.27 4.30
592 631 5.189934 AGAGGAGAAAATATCAACCTTCCGT 59.810 40.000 0.00 0.00 37.27 4.69
596 4547 4.636206 AGAAAATATCAACCTTCCGTCAGC 59.364 41.667 0.00 0.00 0.00 4.26
599 4550 2.449031 ATCAACCTTCCGTCAGCGCA 62.449 55.000 11.47 0.00 36.67 6.09
602 4553 2.357517 CCTTCCGTCAGCGCAACT 60.358 61.111 11.47 0.00 36.67 3.16
604 4555 2.720758 CTTCCGTCAGCGCAACTCG 61.721 63.158 11.47 8.75 42.12 4.18
618 4569 0.962356 AACTCGGCTGCCATTTCCAG 60.962 55.000 20.29 6.37 0.00 3.86
622 4573 0.947244 CGGCTGCCATTTCCAGTATC 59.053 55.000 20.29 0.00 32.93 2.24
623 4574 1.322442 GGCTGCCATTTCCAGTATCC 58.678 55.000 15.17 0.00 32.93 2.59
624 4575 1.410083 GGCTGCCATTTCCAGTATCCA 60.410 52.381 15.17 0.00 32.93 3.41
656 4607 4.083862 GCGCTCCTCCCCGTCTTT 62.084 66.667 0.00 0.00 0.00 2.52
672 4623 3.471680 GTCTTTGAAGAACACCTGCTCT 58.528 45.455 0.00 0.00 36.68 4.09
730 4682 4.773117 GCTCCCGGACACGACGAC 62.773 72.222 0.73 0.00 44.60 4.34
754 4706 2.522638 GCGGCACCGGAAGAATACG 61.523 63.158 9.46 3.67 40.19 3.06
892 4858 0.108898 CAGGTTCGAGCTCAGGTGAG 60.109 60.000 15.40 2.37 44.75 3.51
940 4908 3.627237 GGATGCCACATTCCCCTCTTTTA 60.627 47.826 0.00 0.00 0.00 1.52
943 4911 4.424842 TGCCACATTCCCCTCTTTTATTT 58.575 39.130 0.00 0.00 0.00 1.40
951 4925 7.673926 ACATTCCCCTCTTTTATTTTTCTGCTA 59.326 33.333 0.00 0.00 0.00 3.49
1164 5141 1.000019 CACCACCGACCTCCTCCTA 60.000 63.158 0.00 0.00 0.00 2.94
1177 5157 4.017037 ACCTCCTCCTAGTCTTTGATGAGA 60.017 45.833 0.00 0.00 0.00 3.27
1179 5159 4.282496 TCCTCCTAGTCTTTGATGAGACC 58.718 47.826 1.68 0.00 45.69 3.85
1218 5198 2.733858 GCGTTTCAAACAGCTGGTGAAA 60.734 45.455 29.51 29.51 38.57 2.69
1276 5256 0.110056 GTGCAAGATCGTTGCCTGTG 60.110 55.000 20.15 0.09 44.32 3.66
1292 5272 2.421107 CCTGTGTTGATGATGAGGAGGG 60.421 54.545 0.00 0.00 0.00 4.30
1377 5381 3.133901 TCCTACTCAGTGTTGCTGTTGAA 59.866 43.478 0.00 0.00 45.23 2.69
1378 5382 3.496130 CCTACTCAGTGTTGCTGTTGAAG 59.504 47.826 0.00 0.00 45.23 3.02
1379 5383 3.266510 ACTCAGTGTTGCTGTTGAAGA 57.733 42.857 0.00 0.00 45.23 2.87
1391 5395 3.750130 GCTGTTGAAGATGATGACACTGT 59.250 43.478 0.00 0.00 0.00 3.55
1402 5406 1.112950 TGACACTGTGTACGACCCAA 58.887 50.000 14.31 0.00 0.00 4.12
1441 5451 1.093159 CATCTCCCAGCACTTGAAGC 58.907 55.000 0.00 0.00 0.00 3.86
1444 5454 0.324285 CTCCCAGCACTTGAAGCTCT 59.676 55.000 0.00 0.00 41.14 4.09
1452 5462 2.739379 GCACTTGAAGCTCTTACACCTC 59.261 50.000 0.00 0.00 0.00 3.85
1582 5592 4.300189 TCACTAAAGCGTTTGTGCATTT 57.700 36.364 18.75 0.00 39.45 2.32
1595 5605 3.734463 TGTGCATTTCCGACTTCTGTTA 58.266 40.909 0.00 0.00 0.00 2.41
1644 5654 0.326238 TTGCCCCGGGTCTTATCTCT 60.326 55.000 21.85 0.00 0.00 3.10
1706 5716 8.636213 CCTTGAATACATGCCATTTCTAGAAAT 58.364 33.333 22.43 22.43 41.33 2.17
1805 6006 1.942657 CTGTCATGCTTATCCCGTTGG 59.057 52.381 0.00 0.00 0.00 3.77
1870 6095 4.142790 GGAGTTGATTGCTGATCATGGAT 58.857 43.478 0.00 0.00 44.01 3.41
1893 6118 0.951558 AAAGGGTACGCTTGCACTTG 59.048 50.000 24.14 0.00 0.00 3.16
1896 6121 1.207593 GGTACGCTTGCACTTGCTG 59.792 57.895 2.33 0.00 42.66 4.41
1914 6140 3.057315 TGCTGCCTTTTCACTCTTATTGC 60.057 43.478 0.00 0.00 0.00 3.56
1919 6172 6.855836 TGCCTTTTCACTCTTATTGCTATTG 58.144 36.000 0.00 0.00 0.00 1.90
1920 6173 6.127647 TGCCTTTTCACTCTTATTGCTATTGG 60.128 38.462 0.00 0.00 0.00 3.16
1933 6186 3.214696 GCTATTGGCACCCATAGTTCT 57.785 47.619 8.98 0.00 41.35 3.01
1934 6187 3.555966 GCTATTGGCACCCATAGTTCTT 58.444 45.455 8.98 0.00 41.35 2.52
1935 6188 3.954258 GCTATTGGCACCCATAGTTCTTT 59.046 43.478 8.98 0.00 41.35 2.52
1936 6189 4.402474 GCTATTGGCACCCATAGTTCTTTT 59.598 41.667 8.98 0.00 41.35 2.27
1937 6190 4.806640 ATTGGCACCCATAGTTCTTTTG 57.193 40.909 0.00 0.00 31.53 2.44
1938 6191 3.237268 TGGCACCCATAGTTCTTTTGT 57.763 42.857 0.00 0.00 0.00 2.83
1939 6192 4.374689 TGGCACCCATAGTTCTTTTGTA 57.625 40.909 0.00 0.00 0.00 2.41
1940 6193 4.331968 TGGCACCCATAGTTCTTTTGTAG 58.668 43.478 0.00 0.00 0.00 2.74
1941 6194 4.202524 TGGCACCCATAGTTCTTTTGTAGT 60.203 41.667 0.00 0.00 0.00 2.73
1942 6195 5.013287 TGGCACCCATAGTTCTTTTGTAGTA 59.987 40.000 0.00 0.00 0.00 1.82
1943 6196 6.120220 GGCACCCATAGTTCTTTTGTAGTAT 58.880 40.000 0.00 0.00 0.00 2.12
1944 6197 6.260271 GGCACCCATAGTTCTTTTGTAGTATC 59.740 42.308 0.00 0.00 0.00 2.24
1945 6198 6.821665 GCACCCATAGTTCTTTTGTAGTATCA 59.178 38.462 0.00 0.00 0.00 2.15
1946 6199 7.201617 GCACCCATAGTTCTTTTGTAGTATCAC 60.202 40.741 0.00 0.00 0.00 3.06
1947 6200 7.822334 CACCCATAGTTCTTTTGTAGTATCACA 59.178 37.037 0.00 0.00 0.00 3.58
1948 6201 8.548877 ACCCATAGTTCTTTTGTAGTATCACAT 58.451 33.333 0.00 0.00 0.00 3.21
1949 6202 9.046296 CCCATAGTTCTTTTGTAGTATCACATC 57.954 37.037 0.00 0.00 0.00 3.06
1950 6203 9.046296 CCATAGTTCTTTTGTAGTATCACATCC 57.954 37.037 0.00 0.00 0.00 3.51
1951 6204 9.599866 CATAGTTCTTTTGTAGTATCACATCCA 57.400 33.333 0.00 0.00 0.00 3.41
1954 6207 8.950210 AGTTCTTTTGTAGTATCACATCCATTG 58.050 33.333 0.00 0.00 0.00 2.82
1955 6208 7.320443 TCTTTTGTAGTATCACATCCATTGC 57.680 36.000 0.00 0.00 0.00 3.56
1996 6249 9.113838 CTTATTCTCATTACCACAGTTTGCTAT 57.886 33.333 0.00 0.00 0.00 2.97
2000 6253 8.177119 TCTCATTACCACAGTTTGCTATTTTT 57.823 30.769 0.00 0.00 0.00 1.94
2044 6302 9.624697 GATCAACAATTTAATAACACAGAAGCA 57.375 29.630 0.00 0.00 0.00 3.91
2057 6316 7.480760 AACACAGAAGCATAATTGGGTAAAT 57.519 32.000 0.00 0.00 0.00 1.40
2058 6317 6.866480 ACACAGAAGCATAATTGGGTAAATG 58.134 36.000 0.00 0.00 0.00 2.32
2060 6319 7.613801 ACACAGAAGCATAATTGGGTAAATGTA 59.386 33.333 0.00 0.00 0.00 2.29
2061 6320 8.465999 CACAGAAGCATAATTGGGTAAATGTAA 58.534 33.333 0.00 0.00 0.00 2.41
2082 6341 7.090173 TGTAATATTTTCAAAGCTTGAGGTGC 58.910 34.615 0.00 0.00 41.38 5.01
2087 6346 2.378038 TCAAAGCTTGAGGTGCAGTTT 58.622 42.857 0.00 0.00 34.08 2.66
2090 6349 6.983776 TCAAAGCTTGAGGTGCAGTTTTGC 62.984 45.833 0.00 0.00 41.92 3.68
2194 6477 6.760770 TGGTTCCTTTTTGTTCTTTTGCTATG 59.239 34.615 0.00 0.00 0.00 2.23
2195 6478 6.983890 GGTTCCTTTTTGTTCTTTTGCTATGA 59.016 34.615 0.00 0.00 0.00 2.15
2241 6572 8.110860 ACTACCCTAAATGATTTTGTCTTGTG 57.889 34.615 0.00 0.00 0.00 3.33
2293 6629 7.843490 TGCTATTTGTCCAGTTTATCTACAC 57.157 36.000 0.00 0.00 0.00 2.90
2364 6700 4.442706 ACTCAGTGAGTGGTTTACAACTG 58.557 43.478 24.93 0.00 41.76 3.16
2370 6706 4.634443 GTGAGTGGTTTACAACTGTTGACT 59.366 41.667 26.00 16.93 0.00 3.41
2372 6708 5.123186 TGAGTGGTTTACAACTGTTGACTTG 59.877 40.000 26.00 0.95 0.00 3.16
2423 6759 2.094130 TGAGATGCTCACTCTTCAGCTG 60.094 50.000 7.63 7.63 35.39 4.24
2440 6785 6.406692 TCAGCTGGATAACACTAAGGTATC 57.593 41.667 15.13 0.00 44.63 2.24
2557 6952 1.203100 AGCAACAGGAGCCCAAGAAAT 60.203 47.619 0.00 0.00 0.00 2.17
2564 6959 1.943340 GGAGCCCAAGAAATGATCGAC 59.057 52.381 0.00 0.00 0.00 4.20
2621 7017 7.648142 TCAACATTGAATGTAGAAAGGTTGAC 58.352 34.615 11.70 0.00 44.74 3.18
2644 7040 3.977427 AGGGAGTTCGCAAAATTTTGAC 58.023 40.909 30.40 20.31 40.55 3.18
2668 7064 4.137116 TCTTGAGTACATGTGGCATACC 57.863 45.455 9.11 0.00 0.00 2.73
2698 7094 4.258543 CAAATTGGCATCAAGGAGCAATT 58.741 39.130 0.00 0.00 36.19 2.32
2701 7097 2.016318 TGGCATCAAGGAGCAATTACG 58.984 47.619 0.00 0.00 0.00 3.18
2730 7127 5.697633 TCAGACCGTAATTAACCTTTGTCAC 59.302 40.000 0.00 0.00 0.00 3.67
2792 7244 2.325583 TGTCTGTTGTGACACCCTTC 57.674 50.000 2.45 0.00 41.43 3.46
2853 7306 2.359900 CTGGTGTAGTTCAGAATGGCC 58.640 52.381 0.00 0.00 36.16 5.36
2931 7385 6.003950 AGAATAGTTACCACACATTGCTGTT 58.996 36.000 0.00 0.00 31.62 3.16
2932 7386 3.988379 AGTTACCACACATTGCTGTTG 57.012 42.857 0.00 0.00 31.62 3.33
2933 7387 3.287222 AGTTACCACACATTGCTGTTGT 58.713 40.909 0.00 0.00 31.62 3.32
2935 7389 0.102844 ACCACACATTGCTGTTGTGC 59.897 50.000 12.23 0.00 46.65 4.57
2936 7390 0.598158 CCACACATTGCTGTTGTGCC 60.598 55.000 12.23 0.00 46.65 5.01
2937 7391 0.386476 CACACATTGCTGTTGTGCCT 59.614 50.000 12.23 0.00 46.65 4.75
2938 7392 1.608109 CACACATTGCTGTTGTGCCTA 59.392 47.619 12.23 0.00 46.65 3.93
2939 7393 2.229543 CACACATTGCTGTTGTGCCTAT 59.770 45.455 12.23 0.00 46.65 2.57
2940 7394 3.439825 CACACATTGCTGTTGTGCCTATA 59.560 43.478 12.23 0.00 46.65 1.31
2941 7395 4.078537 ACACATTGCTGTTGTGCCTATAA 58.921 39.130 12.23 0.00 46.65 0.98
2942 7396 4.522405 ACACATTGCTGTTGTGCCTATAAA 59.478 37.500 12.23 0.00 46.65 1.40
2943 7397 5.185635 ACACATTGCTGTTGTGCCTATAAAT 59.814 36.000 12.23 0.00 46.65 1.40
2944 7398 5.745294 CACATTGCTGTTGTGCCTATAAATC 59.255 40.000 2.18 0.00 38.18 2.17
2945 7399 5.653769 ACATTGCTGTTGTGCCTATAAATCT 59.346 36.000 0.00 0.00 28.70 2.40
2946 7400 5.565592 TTGCTGTTGTGCCTATAAATCTG 57.434 39.130 0.00 0.00 0.00 2.90
3042 7499 5.879223 ACTGATGGAAATAGCAGTTCTTCTG 59.121 40.000 0.00 0.00 44.18 3.02
3056 7513 7.597386 GCAGTTCTTCTGGTCTTGAAATTTAT 58.403 34.615 0.00 0.00 43.78 1.40
3057 7515 7.752686 GCAGTTCTTCTGGTCTTGAAATTTATC 59.247 37.037 0.00 0.00 43.78 1.75
3082 7540 3.788227 TCTTTGCTGTCCAGTTGGTAT 57.212 42.857 0.00 0.00 36.34 2.73
3156 7617 8.287439 TCATTGTTTTCACTTTTGTTCCTAGA 57.713 30.769 0.00 0.00 0.00 2.43
3157 7618 8.912988 TCATTGTTTTCACTTTTGTTCCTAGAT 58.087 29.630 0.00 0.00 0.00 1.98
3164 7625 8.974060 TTCACTTTTGTTCCTAGATAGTTGTT 57.026 30.769 0.00 0.00 0.00 2.83
3213 7683 2.036958 TGCATGCATACCACAGTACC 57.963 50.000 18.46 0.00 0.00 3.34
3214 7684 1.280421 TGCATGCATACCACAGTACCA 59.720 47.619 18.46 0.00 0.00 3.25
3216 7686 2.939198 GCATGCATACCACAGTACCACA 60.939 50.000 14.21 0.00 0.00 4.17
3217 7687 2.465860 TGCATACCACAGTACCACAC 57.534 50.000 0.00 0.00 0.00 3.82
3218 7688 1.974957 TGCATACCACAGTACCACACT 59.025 47.619 0.00 0.00 38.32 3.55
3219 7689 3.166679 TGCATACCACAGTACCACACTA 58.833 45.455 0.00 0.00 34.98 2.74
3220 7690 3.056393 TGCATACCACAGTACCACACTAC 60.056 47.826 0.00 0.00 34.98 2.73
3221 7691 3.677976 GCATACCACAGTACCACACTACC 60.678 52.174 0.00 0.00 34.98 3.18
3223 7693 2.245582 ACCACAGTACCACACTACCTC 58.754 52.381 0.00 0.00 34.98 3.85
3224 7694 2.158355 ACCACAGTACCACACTACCTCT 60.158 50.000 0.00 0.00 34.98 3.69
3225 7695 2.231478 CCACAGTACCACACTACCTCTG 59.769 54.545 0.00 0.00 34.98 3.35
3227 7697 3.572682 CACAGTACCACACTACCTCTGAA 59.427 47.826 0.00 0.00 34.98 3.02
3228 7698 3.827302 ACAGTACCACACTACCTCTGAAG 59.173 47.826 0.00 0.00 34.98 3.02
3230 7700 4.281182 CAGTACCACACTACCTCTGAAGTT 59.719 45.833 0.00 0.00 34.98 2.66
3231 7701 4.900054 AGTACCACACTACCTCTGAAGTTT 59.100 41.667 0.00 0.00 34.98 2.66
3232 7702 4.338379 ACCACACTACCTCTGAAGTTTC 57.662 45.455 0.00 0.00 0.00 2.78
3233 7703 3.709653 ACCACACTACCTCTGAAGTTTCA 59.290 43.478 0.00 0.00 35.57 2.69
3234 7704 4.058817 CCACACTACCTCTGAAGTTTCAC 58.941 47.826 0.00 0.00 32.90 3.18
3235 7705 4.442893 CCACACTACCTCTGAAGTTTCACA 60.443 45.833 0.00 0.00 32.90 3.58
3236 7706 4.747108 CACACTACCTCTGAAGTTTCACAG 59.253 45.833 0.00 0.00 32.90 3.66
3237 7707 4.406003 ACACTACCTCTGAAGTTTCACAGT 59.594 41.667 0.00 0.00 35.84 3.55
3238 7708 5.597182 ACACTACCTCTGAAGTTTCACAGTA 59.403 40.000 0.00 0.00 35.84 2.74
3239 7709 5.921408 CACTACCTCTGAAGTTTCACAGTAC 59.079 44.000 0.00 0.00 35.84 2.73
3240 7710 4.338379 ACCTCTGAAGTTTCACAGTACC 57.662 45.455 0.00 0.00 35.84 3.34
3241 7711 3.709653 ACCTCTGAAGTTTCACAGTACCA 59.290 43.478 0.00 0.00 35.84 3.25
3242 7712 4.058817 CCTCTGAAGTTTCACAGTACCAC 58.941 47.826 0.00 0.00 35.84 4.16
3243 7713 4.442893 CCTCTGAAGTTTCACAGTACCACA 60.443 45.833 0.00 0.00 35.84 4.17
3244 7714 4.693283 TCTGAAGTTTCACAGTACCACAG 58.307 43.478 0.00 0.00 35.84 3.66
3245 7715 4.161565 TCTGAAGTTTCACAGTACCACAGT 59.838 41.667 0.00 0.00 35.84 3.55
3246 7716 5.361571 TCTGAAGTTTCACAGTACCACAGTA 59.638 40.000 0.00 0.00 35.84 2.74
3247 7717 5.353938 TGAAGTTTCACAGTACCACAGTAC 58.646 41.667 0.00 0.00 39.73 2.73
3248 7718 5.682990 TGAAGTTTCACAGTACCACAGTACC 60.683 44.000 0.00 0.00 40.00 3.34
3249 7719 8.035212 TGAAGTTTCACAGTACCACAGTACCA 62.035 42.308 0.00 0.00 40.00 3.25
3250 7720 9.926214 TGAAGTTTCACAGTACCACAGTACCAC 62.926 44.444 0.00 0.00 40.00 4.16
3273 7743 1.153667 CCTCTGAGTCTTGAGGCGC 60.154 63.158 16.09 0.00 42.62 6.53
3288 7758 1.143684 AGGCGCCTGAATGGTCATATT 59.856 47.619 32.33 0.00 38.35 1.28
3291 7761 3.758554 GGCGCCTGAATGGTCATATTTAT 59.241 43.478 22.15 0.00 38.35 1.40
3293 7763 5.590259 GGCGCCTGAATGGTCATATTTATAT 59.410 40.000 22.15 0.00 38.35 0.86
3294 7764 6.765989 GGCGCCTGAATGGTCATATTTATATA 59.234 38.462 22.15 0.00 38.35 0.86
3295 7765 7.445402 GGCGCCTGAATGGTCATATTTATATAT 59.555 37.037 22.15 0.00 38.35 0.86
3296 7766 8.840321 GCGCCTGAATGGTCATATTTATATATT 58.160 33.333 0.00 0.00 38.35 1.28
3315 7785 6.917217 ATATTTGCTCTCACAAAGCTAGAC 57.083 37.500 0.00 0.00 42.45 2.59
3317 7787 3.309961 TGCTCTCACAAAGCTAGACTG 57.690 47.619 0.00 0.00 40.50 3.51
3319 7789 2.615869 CTCTCACAAAGCTAGACTGCC 58.384 52.381 0.00 0.00 0.00 4.85
3324 7794 1.202806 ACAAAGCTAGACTGCCAAGCA 60.203 47.619 0.00 0.00 38.75 3.91
3342 7812 5.106396 CCAAGCAAACAAACAAATTTGGTCA 60.106 36.000 21.74 0.00 45.28 4.02
3344 7814 5.244755 AGCAAACAAACAAATTTGGTCAGT 58.755 33.333 21.74 14.49 45.28 3.41
3347 7817 5.413309 AACAAACAAATTTGGTCAGTCCA 57.587 34.783 21.74 0.00 42.25 4.02
3348 7818 5.175127 AACAAACAAATTTGGTCAGTCCAC 58.825 37.500 21.74 0.00 42.25 4.02
3349 7819 5.046663 AACAAACAAATTTGGTCAGTCCACT 60.047 36.000 21.74 1.31 42.25 4.00
3350 7820 6.519891 AACAAACAAATTTGGTCAGTCCACTT 60.520 34.615 21.74 0.75 42.25 3.16
3351 7821 7.958053 AACAAACAAATTTGGTCAGTCCACTTT 60.958 33.333 21.74 6.68 42.25 2.66
3371 7841 5.069119 ACTTTGAGGGGACAAAAATCTGTTC 59.931 40.000 0.00 0.00 38.90 3.18
3375 7845 5.010922 TGAGGGGACAAAAATCTGTTCAATG 59.989 40.000 0.00 0.00 0.00 2.82
3394 7864 6.577103 TCAATGTCACCTGATAGTTGAGATC 58.423 40.000 0.00 0.00 0.00 2.75
3400 7870 5.721480 TCACCTGATAGTTGAGATCTTGGAA 59.279 40.000 0.00 0.00 0.00 3.53
3416 7886 9.322769 AGATCTTGGAAGTAGGAACTAAACTTA 57.677 33.333 0.00 0.00 45.48 2.24
3460 7930 2.554462 GGTTTCAGTTTCCAGAAGCCTC 59.446 50.000 0.00 0.00 40.62 4.70
3463 7933 2.050144 TCAGTTTCCAGAAGCCTCTGT 58.950 47.619 11.35 0.00 46.71 3.41
3464 7934 3.239449 TCAGTTTCCAGAAGCCTCTGTA 58.761 45.455 11.35 0.00 46.71 2.74
3485 7955 0.176680 CCGCTGCTTCCATCTACTGT 59.823 55.000 0.00 0.00 0.00 3.55
3486 7956 1.284657 CGCTGCTTCCATCTACTGTG 58.715 55.000 0.00 0.00 0.00 3.66
3490 7960 1.339055 TGCTTCCATCTACTGTGGCAC 60.339 52.381 11.55 11.55 36.66 5.01
3491 7961 1.065854 GCTTCCATCTACTGTGGCACT 60.066 52.381 19.83 1.37 36.66 4.40
3492 7962 2.168521 GCTTCCATCTACTGTGGCACTA 59.831 50.000 19.83 2.66 36.66 2.74
3493 7963 3.739519 GCTTCCATCTACTGTGGCACTAG 60.740 52.174 19.83 15.98 36.66 2.57
3494 7964 1.757118 TCCATCTACTGTGGCACTAGC 59.243 52.381 19.83 0.00 36.66 3.42
3498 7968 2.025155 TCTACTGTGGCACTAGCTAGC 58.975 52.381 20.91 6.62 41.70 3.42
3514 7984 0.764890 TAGCTGCAGTTTCCACCAGT 59.235 50.000 16.64 0.00 0.00 4.00
3518 7988 0.465460 TGCAGTTTCCACCAGTGACC 60.465 55.000 0.00 0.00 0.00 4.02
3519 7989 1.507141 GCAGTTTCCACCAGTGACCG 61.507 60.000 0.00 0.00 0.00 4.79
3522 7992 1.098712 GTTTCCACCAGTGACCGCAA 61.099 55.000 0.00 0.00 0.00 4.85
3531 8001 2.029844 GTGACCGCAACTGAGAGCC 61.030 63.158 0.00 0.00 0.00 4.70
3534 8004 2.185350 CCGCAACTGAGAGCCGAT 59.815 61.111 0.00 0.00 0.00 4.18
3575 8045 4.072131 TGTGATGTTGGTCTAAAGCCTTC 58.928 43.478 0.00 0.00 0.00 3.46
3581 8051 2.054799 TGGTCTAAAGCCTTCTGTGGT 58.945 47.619 0.00 0.00 0.00 4.16
3598 8068 7.009179 TCTGTGGTTCTCTGAATAAGAATGT 57.991 36.000 0.00 0.00 35.35 2.71
3612 8082 1.988107 AGAATGTGATGGTGGTCCTGT 59.012 47.619 0.00 0.00 34.23 4.00
3642 8112 7.324935 TGTTATCGCCACATTTAGTTTCTAGA 58.675 34.615 0.00 0.00 0.00 2.43
3674 8144 6.265196 TCTTTTGGTGATGTGCTAGAAAATGT 59.735 34.615 0.00 0.00 0.00 2.71
3678 8148 6.446318 TGGTGATGTGCTAGAAAATGTTTTC 58.554 36.000 9.61 9.61 45.22 2.29
3754 9984 8.791327 AATGGTTGGTCAAAATAATGGAAATC 57.209 30.769 0.00 0.00 0.00 2.17
3760 9990 5.451381 GGTCAAAATAATGGAAATCGGGTCC 60.451 44.000 0.00 0.00 35.55 4.46
3765 9995 3.192922 GGAAATCGGGTCCGTGCG 61.193 66.667 9.36 0.00 40.74 5.34
3791 10022 4.463891 CCCCTTTGACTGCATGAGTTTATT 59.536 41.667 0.00 0.00 33.83 1.40
3805 10036 7.068716 GCATGAGTTTATTTTCCCCAGAGTATT 59.931 37.037 0.00 0.00 0.00 1.89
3806 10037 7.938140 TGAGTTTATTTTCCCCAGAGTATTG 57.062 36.000 0.00 0.00 0.00 1.90
3807 10038 6.377146 TGAGTTTATTTTCCCCAGAGTATTGC 59.623 38.462 0.00 0.00 0.00 3.56
3808 10039 6.494059 AGTTTATTTTCCCCAGAGTATTGCT 58.506 36.000 0.00 0.00 0.00 3.91
3809 10040 6.954102 AGTTTATTTTCCCCAGAGTATTGCTT 59.046 34.615 0.00 0.00 0.00 3.91
3810 10041 7.454694 AGTTTATTTTCCCCAGAGTATTGCTTT 59.545 33.333 0.00 0.00 0.00 3.51
3811 10042 8.745590 GTTTATTTTCCCCAGAGTATTGCTTTA 58.254 33.333 0.00 0.00 0.00 1.85
3812 10043 9.487442 TTTATTTTCCCCAGAGTATTGCTTTAT 57.513 29.630 0.00 0.00 0.00 1.40
3813 10044 7.978099 ATTTTCCCCAGAGTATTGCTTTATT 57.022 32.000 0.00 0.00 0.00 1.40
3814 10045 7.790782 TTTTCCCCAGAGTATTGCTTTATTT 57.209 32.000 0.00 0.00 0.00 1.40
3815 10046 7.404671 TTTCCCCAGAGTATTGCTTTATTTC 57.595 36.000 0.00 0.00 0.00 2.17
3816 10047 6.327386 TCCCCAGAGTATTGCTTTATTTCT 57.673 37.500 0.00 0.00 0.00 2.52
3817 10048 6.731467 TCCCCAGAGTATTGCTTTATTTCTT 58.269 36.000 0.00 0.00 0.00 2.52
3818 10049 7.182060 TCCCCAGAGTATTGCTTTATTTCTTT 58.818 34.615 0.00 0.00 0.00 2.52
3819 10050 8.333235 TCCCCAGAGTATTGCTTTATTTCTTTA 58.667 33.333 0.00 0.00 0.00 1.85
3820 10051 9.136323 CCCCAGAGTATTGCTTTATTTCTTTAT 57.864 33.333 0.00 0.00 0.00 1.40
3868 10099 7.855904 AGTTTTGCTAGAAATGTTTTAGACACG 59.144 33.333 0.00 0.00 42.04 4.49
3925 10156 4.680237 CAGTGAACGCCGGAGCCA 62.680 66.667 5.05 0.00 34.57 4.75
3927 10158 3.723348 GTGAACGCCGGAGCCAAC 61.723 66.667 5.05 0.00 34.57 3.77
3939 10170 3.047280 GCCAACGGCGTCATGTCA 61.047 61.111 15.17 0.00 39.62 3.58
4012 10244 1.597742 TGTCTTGCTGAAGGTTGCTC 58.402 50.000 0.00 0.00 0.00 4.26
4021 10253 0.178068 GAAGGTTGCTCTGGCCGATA 59.822 55.000 0.00 0.00 37.74 2.92
4046 10278 2.096013 GCCTTACCGTTGAAGATCTTGC 59.904 50.000 14.00 5.38 0.00 4.01
4081 10313 5.286082 CCGATGATCGTTTGGATTTTGTTTC 59.714 40.000 14.27 0.00 38.40 2.78
4083 10315 6.582295 CGATGATCGTTTGGATTTTGTTTCTT 59.418 34.615 6.68 0.00 34.82 2.52
4091 10324 4.677584 TGGATTTTGTTTCTTGAACCACG 58.322 39.130 0.00 0.00 37.45 4.94
4112 10346 3.622206 CGATCTTGTGGATTTGGGGAGAA 60.622 47.826 0.00 0.00 34.33 2.87
4129 10363 5.073428 GGGAGAAAGAGAAAAGTGGAACAT 58.927 41.667 0.00 0.00 44.52 2.71
4159 10393 6.160576 TGTAGAAAAAGGCTGCTTTGAAAT 57.839 33.333 0.00 0.00 0.00 2.17
4200 10435 2.427812 GTGCTTAGTGGGTCTAGAGGAC 59.572 54.545 0.00 0.00 43.79 3.85
4218 10453 5.071115 AGAGGACAAAGCCCTTATCTGATAC 59.929 44.000 0.00 0.00 33.36 2.24
4222 10457 5.930135 ACAAAGCCCTTATCTGATACGATT 58.070 37.500 2.98 0.00 0.00 3.34
4223 10458 6.357367 ACAAAGCCCTTATCTGATACGATTT 58.643 36.000 2.98 0.77 0.00 2.17
4224 10459 6.828785 ACAAAGCCCTTATCTGATACGATTTT 59.171 34.615 2.98 0.00 0.00 1.82
4253 10488 4.621460 CGATCACGACAATTATTAGCGGAT 59.379 41.667 0.00 0.00 42.66 4.18
4320 10555 3.757248 ATTGAGGGATGGCGCCGAC 62.757 63.158 23.90 17.86 0.00 4.79
4325 10560 3.896133 GGATGGCGCCGACTCGTA 61.896 66.667 23.90 1.41 0.00 3.43
4332 10567 1.064296 CGCCGACTCGTATGCTCTT 59.936 57.895 0.00 0.00 0.00 2.85
4388 10623 4.287552 AGGCGTCTTCCTCTCCTTATTTA 58.712 43.478 0.00 0.00 0.00 1.40
4392 10627 6.281405 GCGTCTTCCTCTCCTTATTTATTCA 58.719 40.000 0.00 0.00 0.00 2.57
4399 10634 5.182760 CCTCTCCTTATTTATTCATGCTGCC 59.817 44.000 0.00 0.00 0.00 4.85
4446 10681 5.607171 TCAGGTTCCTTTTTCTCTAGACCTT 59.393 40.000 0.00 0.00 34.21 3.50
4467 10702 0.391263 ATCGACTTTGCGGTTCCCTC 60.391 55.000 0.00 0.00 0.00 4.30
4479 10714 2.716217 GGTTCCCTCCTTTCTCATGTG 58.284 52.381 0.00 0.00 0.00 3.21
4482 10717 2.907892 TCCCTCCTTTCTCATGTGTCT 58.092 47.619 0.00 0.00 0.00 3.41
4490 10725 7.147828 CCTCCTTTCTCATGTGTCTACTGATTA 60.148 40.741 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.751837 GGGAAAAGAGGGCCGCAG 60.752 66.667 10.70 0.00 0.00 5.18
98 99 4.873810 CGCATCATGGCCGGGGAA 62.874 66.667 2.18 0.00 0.00 3.97
325 349 2.605607 CCATCTGCTCCCCACCACA 61.606 63.158 0.00 0.00 0.00 4.17
327 351 3.016971 CCCATCTGCTCCCCACCA 61.017 66.667 0.00 0.00 0.00 4.17
351 389 1.757306 CTCTCCATTCCCCATCCCG 59.243 63.158 0.00 0.00 0.00 5.14
371 409 0.340208 ATCCCCTTCTCTCTCCCGTT 59.660 55.000 0.00 0.00 0.00 4.44
402 440 4.643784 AGTCGTCCCGAACAAACTAGATAT 59.356 41.667 0.00 0.00 37.72 1.63
505 543 0.104671 TTCGGTCCGAACGTCCTTTT 59.895 50.000 22.76 0.00 41.05 2.27
567 606 5.755861 CGGAAGGTTGATATTTTCTCCTCTC 59.244 44.000 0.00 0.00 32.03 3.20
568 607 5.189934 ACGGAAGGTTGATATTTTCTCCTCT 59.810 40.000 0.00 0.00 32.03 3.69
571 610 5.183228 TGACGGAAGGTTGATATTTTCTCC 58.817 41.667 0.00 0.00 0.00 3.71
572 611 5.220681 GCTGACGGAAGGTTGATATTTTCTC 60.221 44.000 0.00 0.00 0.00 2.87
573 612 4.636206 GCTGACGGAAGGTTGATATTTTCT 59.364 41.667 0.00 0.00 0.00 2.52
574 613 4.494199 CGCTGACGGAAGGTTGATATTTTC 60.494 45.833 0.00 0.00 34.97 2.29
575 614 3.374058 CGCTGACGGAAGGTTGATATTTT 59.626 43.478 0.00 0.00 34.97 1.82
577 616 2.550978 CGCTGACGGAAGGTTGATATT 58.449 47.619 0.00 0.00 34.97 1.28
578 617 1.806623 GCGCTGACGGAAGGTTGATAT 60.807 52.381 0.00 0.00 40.57 1.63
579 618 0.459585 GCGCTGACGGAAGGTTGATA 60.460 55.000 0.00 0.00 40.57 2.15
580 619 1.741770 GCGCTGACGGAAGGTTGAT 60.742 57.895 0.00 0.00 40.57 2.57
581 620 2.357034 GCGCTGACGGAAGGTTGA 60.357 61.111 0.00 0.00 40.57 3.18
582 621 2.250939 TTGCGCTGACGGAAGGTTG 61.251 57.895 9.73 0.00 45.19 3.77
583 622 2.110213 TTGCGCTGACGGAAGGTT 59.890 55.556 9.73 0.00 45.19 3.50
591 630 3.782244 CAGCCGAGTTGCGCTGAC 61.782 66.667 9.73 7.74 42.62 3.51
596 4547 2.855728 GAAATGGCAGCCGAGTTGCG 62.856 60.000 7.03 0.00 40.59 4.85
599 4550 0.962356 CTGGAAATGGCAGCCGAGTT 60.962 55.000 7.03 1.38 0.00 3.01
602 4553 0.546122 ATACTGGAAATGGCAGCCGA 59.454 50.000 7.03 0.00 0.00 5.54
604 4555 1.322442 GGATACTGGAAATGGCAGCC 58.678 55.000 3.66 3.66 0.00 4.85
651 4602 3.471680 AGAGCAGGTGTTCTTCAAAGAC 58.528 45.455 0.00 0.00 31.30 3.01
656 4607 0.687354 GGGAGAGCAGGTGTTCTTCA 59.313 55.000 4.69 0.00 35.71 3.02
741 4693 2.426381 GAGTCTTCCGTATTCTTCCGGT 59.574 50.000 0.00 0.00 44.51 5.28
892 4858 0.540597 GGGGAATCCAATAGGCAGCC 60.541 60.000 1.84 1.84 35.00 4.85
924 4891 6.591448 GCAGAAAAATAAAAGAGGGGAATGTG 59.409 38.462 0.00 0.00 0.00 3.21
940 4908 9.920133 GAAGAAAGAAGGAATTAGCAGAAAAAT 57.080 29.630 0.00 0.00 0.00 1.82
943 4911 6.149474 CGGAAGAAAGAAGGAATTAGCAGAAA 59.851 38.462 0.00 0.00 0.00 2.52
951 4925 3.348119 GGAGCGGAAGAAAGAAGGAATT 58.652 45.455 0.00 0.00 0.00 2.17
1158 5135 4.026744 TGGTCTCATCAAAGACTAGGAGG 58.973 47.826 4.24 0.00 44.21 4.30
1164 5141 4.505742 GGGAAACTGGTCTCATCAAAGACT 60.506 45.833 4.24 0.00 44.21 3.24
1177 5157 2.943978 CGGAGCTCGGGAAACTGGT 61.944 63.158 13.25 0.00 37.31 4.00
1196 5176 0.594796 CACCAGCTGTTTGAAACGCC 60.595 55.000 13.81 5.70 33.50 5.68
1276 5256 1.748591 GCACCCCTCCTCATCATCAAC 60.749 57.143 0.00 0.00 0.00 3.18
1292 5272 1.678627 TGGTGTTTGTGTATGTGCACC 59.321 47.619 15.69 0.00 44.60 5.01
1377 5381 3.119459 GGTCGTACACAGTGTCATCATCT 60.119 47.826 10.23 0.00 0.00 2.90
1378 5382 3.179830 GGTCGTACACAGTGTCATCATC 58.820 50.000 10.23 0.00 0.00 2.92
1379 5383 2.094182 GGGTCGTACACAGTGTCATCAT 60.094 50.000 10.23 0.00 0.00 2.45
1391 5395 5.756347 GCATCAAGTATTATTGGGTCGTACA 59.244 40.000 0.00 0.00 0.00 2.90
1402 5406 4.607293 TGAGAGGCGCATCAAGTATTAT 57.393 40.909 25.38 0.00 0.00 1.28
1472 5482 1.469940 GCGAGAAATTCAGAGCGGAGA 60.470 52.381 0.00 0.00 0.00 3.71
1526 5536 1.226379 CGTCCATCAATGCCGCAAC 60.226 57.895 0.00 0.00 0.00 4.17
1582 5592 2.561419 CAGGGAAGTAACAGAAGTCGGA 59.439 50.000 0.00 0.00 0.00 4.55
1595 5605 1.279271 CGTGGAAATCCTCAGGGAAGT 59.721 52.381 0.44 0.00 45.78 3.01
1644 5654 5.238214 GCCATTAAAACCATCAAGTTGCAAA 59.762 36.000 0.00 0.00 0.00 3.68
1870 6095 0.394938 TGCAAGCGTACCCTTTCAGA 59.605 50.000 0.00 0.00 0.00 3.27
1893 6118 3.192212 AGCAATAAGAGTGAAAAGGCAGC 59.808 43.478 0.00 0.00 0.00 5.25
1896 6121 6.268566 CCAATAGCAATAAGAGTGAAAAGGC 58.731 40.000 0.00 0.00 0.00 4.35
1914 6140 5.418840 ACAAAAGAACTATGGGTGCCAATAG 59.581 40.000 10.35 10.35 36.95 1.73
1919 6172 4.332828 ACTACAAAAGAACTATGGGTGCC 58.667 43.478 0.00 0.00 0.00 5.01
1920 6173 6.821665 TGATACTACAAAAGAACTATGGGTGC 59.178 38.462 0.00 0.00 0.00 5.01
1922 6175 7.913789 TGTGATACTACAAAAGAACTATGGGT 58.086 34.615 0.00 0.00 0.00 4.51
1923 6176 8.964476 ATGTGATACTACAAAAGAACTATGGG 57.036 34.615 0.00 0.00 33.69 4.00
1924 6177 9.046296 GGATGTGATACTACAAAAGAACTATGG 57.954 37.037 0.00 0.00 33.69 2.74
1928 6181 8.950210 CAATGGATGTGATACTACAAAAGAACT 58.050 33.333 0.00 0.00 33.69 3.01
1929 6182 7.698130 GCAATGGATGTGATACTACAAAAGAAC 59.302 37.037 0.00 0.00 33.69 3.01
1930 6183 7.611467 AGCAATGGATGTGATACTACAAAAGAA 59.389 33.333 0.00 0.00 33.69 2.52
1932 6185 7.325660 AGCAATGGATGTGATACTACAAAAG 57.674 36.000 0.00 0.00 33.69 2.27
1933 6186 8.264347 TCTAGCAATGGATGTGATACTACAAAA 58.736 33.333 0.00 0.00 33.69 2.44
1934 6187 7.710907 GTCTAGCAATGGATGTGATACTACAAA 59.289 37.037 0.00 0.00 33.69 2.83
1935 6188 7.210174 GTCTAGCAATGGATGTGATACTACAA 58.790 38.462 0.00 0.00 33.69 2.41
1936 6189 6.239317 GGTCTAGCAATGGATGTGATACTACA 60.239 42.308 0.00 0.00 34.63 2.74
1937 6190 6.015010 AGGTCTAGCAATGGATGTGATACTAC 60.015 42.308 0.00 0.00 0.00 2.73
1938 6191 6.015095 CAGGTCTAGCAATGGATGTGATACTA 60.015 42.308 0.00 0.00 0.00 1.82
1939 6192 4.904251 AGGTCTAGCAATGGATGTGATACT 59.096 41.667 0.00 0.00 0.00 2.12
1940 6193 4.993584 CAGGTCTAGCAATGGATGTGATAC 59.006 45.833 0.00 0.00 0.00 2.24
1941 6194 4.503817 GCAGGTCTAGCAATGGATGTGATA 60.504 45.833 0.00 0.00 0.00 2.15
1942 6195 3.746751 GCAGGTCTAGCAATGGATGTGAT 60.747 47.826 0.00 0.00 0.00 3.06
1943 6196 2.420547 GCAGGTCTAGCAATGGATGTGA 60.421 50.000 0.00 0.00 0.00 3.58
1944 6197 1.945394 GCAGGTCTAGCAATGGATGTG 59.055 52.381 0.00 0.00 0.00 3.21
1945 6198 1.561076 TGCAGGTCTAGCAATGGATGT 59.439 47.619 0.00 0.00 39.39 3.06
1946 6199 2.336945 TGCAGGTCTAGCAATGGATG 57.663 50.000 0.00 0.00 39.39 3.51
1953 6206 6.889198 AGAATAAGTATTTGCAGGTCTAGCA 58.111 36.000 0.00 0.00 40.85 3.49
1954 6207 6.986817 TGAGAATAAGTATTTGCAGGTCTAGC 59.013 38.462 0.00 0.00 0.00 3.42
1955 6208 9.553064 AATGAGAATAAGTATTTGCAGGTCTAG 57.447 33.333 0.00 0.00 0.00 2.43
2018 6271 9.624697 TGCTTCTGTGTTATTAAATTGTTGATC 57.375 29.630 0.00 0.00 0.00 2.92
2057 6316 7.090173 GCACCTCAAGCTTTGAAAATATTACA 58.910 34.615 0.00 0.00 39.58 2.41
2058 6317 7.090173 TGCACCTCAAGCTTTGAAAATATTAC 58.910 34.615 0.00 0.00 39.58 1.89
2060 6319 6.100404 TGCACCTCAAGCTTTGAAAATATT 57.900 33.333 0.00 0.00 39.58 1.28
2061 6320 5.244626 ACTGCACCTCAAGCTTTGAAAATAT 59.755 36.000 0.00 0.00 39.58 1.28
2067 6326 2.057137 AACTGCACCTCAAGCTTTGA 57.943 45.000 0.00 0.00 38.17 2.69
2070 6329 1.202452 GCAAAACTGCACCTCAAGCTT 60.202 47.619 0.00 0.00 34.41 3.74
2071 6330 0.386838 GCAAAACTGCACCTCAAGCT 59.613 50.000 0.00 0.00 34.41 3.74
2104 6363 9.582431 TTTGGATAGATACTTTAGTTTCAGACG 57.418 33.333 3.72 0.00 0.00 4.18
2149 6430 8.689972 GGAACCATGATACTCAAGAAATGAAAT 58.310 33.333 0.00 0.00 37.67 2.17
2153 6434 7.636150 AAGGAACCATGATACTCAAGAAATG 57.364 36.000 0.00 0.00 0.00 2.32
2154 6435 8.655935 AAAAGGAACCATGATACTCAAGAAAT 57.344 30.769 0.00 0.00 0.00 2.17
2155 6436 8.359642 CAAAAAGGAACCATGATACTCAAGAAA 58.640 33.333 0.00 0.00 0.00 2.52
2165 6448 6.260714 GCAAAAGAACAAAAAGGAACCATGAT 59.739 34.615 0.00 0.00 0.00 2.45
2170 6453 6.983890 TCATAGCAAAAGAACAAAAAGGAACC 59.016 34.615 0.00 0.00 0.00 3.62
2213 6498 9.667107 CAAGACAAAATCATTTAGGGTAGTAGA 57.333 33.333 0.00 0.00 0.00 2.59
2214 6499 9.449719 ACAAGACAAAATCATTTAGGGTAGTAG 57.550 33.333 0.00 0.00 0.00 2.57
2215 6500 9.226606 CACAAGACAAAATCATTTAGGGTAGTA 57.773 33.333 0.00 0.00 0.00 1.82
2217 6502 7.393234 TCCACAAGACAAAATCATTTAGGGTAG 59.607 37.037 0.00 0.00 0.00 3.18
2218 6503 7.235079 TCCACAAGACAAAATCATTTAGGGTA 58.765 34.615 0.00 0.00 0.00 3.69
2219 6504 6.074648 TCCACAAGACAAAATCATTTAGGGT 58.925 36.000 0.00 0.00 0.00 4.34
2225 6553 6.064060 TGAGACTCCACAAGACAAAATCATT 58.936 36.000 0.00 0.00 0.00 2.57
2228 6556 5.300752 TCTGAGACTCCACAAGACAAAATC 58.699 41.667 0.00 0.00 0.00 2.17
2234 6562 3.305744 GGAACTCTGAGACTCCACAAGAC 60.306 52.174 12.44 0.00 0.00 3.01
2241 6572 4.646572 ACAAAATGGAACTCTGAGACTCC 58.353 43.478 12.44 15.92 0.00 3.85
2293 6629 3.469739 GGGCAGCATTTTAAATCCCATG 58.530 45.455 7.15 0.00 32.68 3.66
2364 6700 2.030805 GGAGAATGCACACCAAGTCAAC 60.031 50.000 0.00 0.00 0.00 3.18
2370 6706 1.680735 GTGTTGGAGAATGCACACCAA 59.319 47.619 10.32 10.32 34.66 3.67
2372 6708 1.537202 GAGTGTTGGAGAATGCACACC 59.463 52.381 0.00 0.00 38.48 4.16
2557 6952 3.119884 GCACACAAATGATTGGTCGATCA 60.120 43.478 0.00 0.00 41.01 2.92
2564 6959 2.477375 GTGCAAGCACACAAATGATTGG 59.523 45.455 19.47 0.00 44.35 3.16
2621 7017 2.979813 CAAAATTTTGCGAACTCCCTCG 59.020 45.455 17.48 0.00 41.84 4.63
2644 7040 2.892374 TGCCACATGTACTCAAGATCG 58.108 47.619 0.00 0.00 0.00 3.69
2668 7064 1.469703 TGATGCCAATTTGCTCACGAG 59.530 47.619 2.90 0.00 0.00 4.18
2698 7094 6.374333 AGGTTAATTACGGTCTGAGTAACGTA 59.626 38.462 0.00 0.00 40.38 3.57
2701 7097 7.386025 ACAAAGGTTAATTACGGTCTGAGTAAC 59.614 37.037 0.00 0.00 36.96 2.50
2717 7113 5.376625 AGCATGAAGAGTGACAAAGGTTAA 58.623 37.500 0.00 0.00 0.00 2.01
2730 7127 2.722629 CGCACAAACAAAGCATGAAGAG 59.277 45.455 0.00 0.00 0.00 2.85
2817 7270 8.172352 ACTACACCAGCAAACAATACAATAAA 57.828 30.769 0.00 0.00 0.00 1.40
2824 7277 5.616270 TCTGAACTACACCAGCAAACAATA 58.384 37.500 0.00 0.00 0.00 1.90
2830 7283 3.411446 CCATTCTGAACTACACCAGCAA 58.589 45.455 0.00 0.00 0.00 3.91
2853 7306 8.760569 AGCAATTAATTTTGGTGAAACTTAACG 58.239 29.630 0.00 0.00 36.07 3.18
2903 7357 6.072508 AGCAATGTGTGGTAACTATTCTGTTG 60.073 38.462 0.00 0.00 35.75 3.33
2906 7360 5.412594 ACAGCAATGTGTGGTAACTATTCTG 59.587 40.000 0.00 0.00 35.75 3.02
2908 7362 5.880054 ACAGCAATGTGTGGTAACTATTC 57.120 39.130 0.00 0.00 35.75 1.75
2931 7385 3.054434 AGGCACACAGATTTATAGGCACA 60.054 43.478 0.00 0.00 0.00 4.57
2932 7386 3.313526 CAGGCACACAGATTTATAGGCAC 59.686 47.826 0.00 0.00 0.00 5.01
2933 7387 3.054434 ACAGGCACACAGATTTATAGGCA 60.054 43.478 0.00 0.00 0.00 4.75
2934 7388 3.545703 ACAGGCACACAGATTTATAGGC 58.454 45.455 0.00 0.00 0.00 3.93
2935 7389 7.716998 AGATTTACAGGCACACAGATTTATAGG 59.283 37.037 0.00 0.00 0.00 2.57
2936 7390 8.554528 CAGATTTACAGGCACACAGATTTATAG 58.445 37.037 0.00 0.00 0.00 1.31
2937 7391 8.046708 ACAGATTTACAGGCACACAGATTTATA 58.953 33.333 0.00 0.00 0.00 0.98
2938 7392 6.886459 ACAGATTTACAGGCACACAGATTTAT 59.114 34.615 0.00 0.00 0.00 1.40
2939 7393 6.237901 ACAGATTTACAGGCACACAGATTTA 58.762 36.000 0.00 0.00 0.00 1.40
2940 7394 5.072741 ACAGATTTACAGGCACACAGATTT 58.927 37.500 0.00 0.00 0.00 2.17
2941 7395 4.655963 ACAGATTTACAGGCACACAGATT 58.344 39.130 0.00 0.00 0.00 2.40
2942 7396 4.292186 ACAGATTTACAGGCACACAGAT 57.708 40.909 0.00 0.00 0.00 2.90
2943 7397 3.769739 ACAGATTTACAGGCACACAGA 57.230 42.857 0.00 0.00 0.00 3.41
2944 7398 3.189287 GGAACAGATTTACAGGCACACAG 59.811 47.826 0.00 0.00 0.00 3.66
2945 7399 3.146066 GGAACAGATTTACAGGCACACA 58.854 45.455 0.00 0.00 0.00 3.72
2946 7400 3.146066 TGGAACAGATTTACAGGCACAC 58.854 45.455 0.00 0.00 0.00 3.82
3009 7464 9.113838 ACTGCTATTTCCATCAGTAGTTAAATG 57.886 33.333 0.00 0.00 37.94 2.32
3010 7465 9.686683 AACTGCTATTTCCATCAGTAGTTAAAT 57.313 29.630 3.01 0.00 41.50 1.40
3056 7513 4.761739 CCAACTGGACAGCAAAGATAAAGA 59.238 41.667 0.00 0.00 37.39 2.52
3057 7515 4.520492 ACCAACTGGACAGCAAAGATAAAG 59.480 41.667 1.86 0.00 38.94 1.85
3070 7528 8.788325 AGTAAAATTGACTATACCAACTGGAC 57.212 34.615 1.86 0.00 38.94 4.02
3118 7579 9.654663 AGTGAAAACAATGAGGAACTATACTAC 57.345 33.333 0.00 0.00 41.55 2.73
3123 7584 8.695456 ACAAAAGTGAAAACAATGAGGAACTAT 58.305 29.630 0.00 0.00 41.55 2.12
3164 7625 7.828717 TGGCATCAATTTCTACTCATCAAACTA 59.171 33.333 0.00 0.00 0.00 2.24
3203 7673 2.158355 AGAGGTAGTGTGGTACTGTGGT 60.158 50.000 0.00 0.00 40.65 4.16
3213 7683 4.693283 TGTGAAACTTCAGAGGTAGTGTG 58.307 43.478 0.00 0.00 37.98 3.82
3214 7684 4.950050 CTGTGAAACTTCAGAGGTAGTGT 58.050 43.478 8.38 0.00 42.85 3.55
3223 7693 4.442706 ACTGTGGTACTGTGAAACTTCAG 58.557 43.478 0.00 0.00 37.98 3.02
3224 7694 4.481368 ACTGTGGTACTGTGAAACTTCA 57.519 40.909 0.00 0.00 38.04 3.02
3225 7695 4.748600 GGTACTGTGGTACTGTGAAACTTC 59.251 45.833 6.32 0.00 45.41 3.01
3227 7697 3.707611 TGGTACTGTGGTACTGTGAAACT 59.292 43.478 6.32 0.00 45.41 2.66
3228 7698 3.805971 GTGGTACTGTGGTACTGTGAAAC 59.194 47.826 6.32 0.00 45.41 2.78
3230 7700 3.032459 TGTGGTACTGTGGTACTGTGAA 58.968 45.455 6.32 0.00 45.41 3.18
3231 7701 2.363038 GTGTGGTACTGTGGTACTGTGA 59.637 50.000 6.32 0.00 45.41 3.58
3232 7702 2.364324 AGTGTGGTACTGTGGTACTGTG 59.636 50.000 6.32 0.00 45.41 3.66
3233 7703 2.674420 AGTGTGGTACTGTGGTACTGT 58.326 47.619 6.32 0.00 45.41 3.55
3234 7704 3.057033 GGTAGTGTGGTACTGTGGTACTG 60.057 52.174 6.32 0.00 45.41 2.74
3235 7705 3.160269 GGTAGTGTGGTACTGTGGTACT 58.840 50.000 6.32 0.00 45.41 2.73
3236 7706 3.160269 AGGTAGTGTGGTACTGTGGTAC 58.840 50.000 0.00 0.00 45.38 3.34
3237 7707 3.074985 AGAGGTAGTGTGGTACTGTGGTA 59.925 47.826 0.00 0.00 40.65 3.25
3238 7708 2.158355 AGAGGTAGTGTGGTACTGTGGT 60.158 50.000 0.00 0.00 40.65 4.16
3239 7709 2.231478 CAGAGGTAGTGTGGTACTGTGG 59.769 54.545 0.00 0.00 40.65 4.17
3240 7710 3.154710 TCAGAGGTAGTGTGGTACTGTG 58.845 50.000 0.00 0.00 40.65 3.66
3241 7711 3.181431 ACTCAGAGGTAGTGTGGTACTGT 60.181 47.826 1.53 0.00 40.65 3.55
3242 7712 3.422796 ACTCAGAGGTAGTGTGGTACTG 58.577 50.000 1.53 0.00 40.65 2.74
3243 7713 3.331294 AGACTCAGAGGTAGTGTGGTACT 59.669 47.826 1.53 0.00 43.56 2.73
3244 7714 3.688235 AGACTCAGAGGTAGTGTGGTAC 58.312 50.000 1.53 0.00 0.00 3.34
3245 7715 4.079970 CAAGACTCAGAGGTAGTGTGGTA 58.920 47.826 1.53 0.00 0.00 3.25
3246 7716 2.894126 CAAGACTCAGAGGTAGTGTGGT 59.106 50.000 1.53 0.00 0.00 4.16
3247 7717 3.157881 TCAAGACTCAGAGGTAGTGTGG 58.842 50.000 1.53 0.00 0.00 4.17
3248 7718 3.192422 CCTCAAGACTCAGAGGTAGTGTG 59.808 52.174 13.33 0.00 45.08 3.82
3249 7719 3.426615 CCTCAAGACTCAGAGGTAGTGT 58.573 50.000 13.33 0.00 45.08 3.55
3291 7761 7.708322 CAGTCTAGCTTTGTGAGAGCAAATATA 59.292 37.037 0.00 0.00 42.56 0.86
3293 7763 5.871524 CAGTCTAGCTTTGTGAGAGCAAATA 59.128 40.000 0.00 0.00 42.56 1.40
3294 7764 4.694509 CAGTCTAGCTTTGTGAGAGCAAAT 59.305 41.667 0.00 0.00 42.56 2.32
3295 7765 4.060900 CAGTCTAGCTTTGTGAGAGCAAA 58.939 43.478 0.00 0.00 42.56 3.68
3296 7766 3.657634 CAGTCTAGCTTTGTGAGAGCAA 58.342 45.455 0.00 0.00 42.56 3.91
3297 7767 2.611473 GCAGTCTAGCTTTGTGAGAGCA 60.611 50.000 0.00 0.00 42.56 4.26
3315 7785 4.619437 AATTTGTTTGTTTGCTTGGCAG 57.381 36.364 0.00 0.00 40.61 4.85
3317 7787 4.104066 CCAAATTTGTTTGTTTGCTTGGC 58.896 39.130 16.73 0.00 34.75 4.52
3319 7789 5.936054 TGACCAAATTTGTTTGTTTGCTTG 58.064 33.333 16.73 0.00 34.75 4.01
3324 7794 5.799213 TGGACTGACCAAATTTGTTTGTTT 58.201 33.333 16.73 0.00 46.75 2.83
3342 7812 1.518367 TTGTCCCCTCAAAGTGGACT 58.482 50.000 9.52 0.00 46.97 3.85
3344 7814 3.390175 TTTTTGTCCCCTCAAAGTGGA 57.610 42.857 0.00 0.00 38.32 4.02
3347 7817 4.546674 ACAGATTTTTGTCCCCTCAAAGT 58.453 39.130 0.00 0.00 38.32 2.66
3348 7818 5.068987 TGAACAGATTTTTGTCCCCTCAAAG 59.931 40.000 0.00 0.00 38.32 2.77
3349 7819 4.959210 TGAACAGATTTTTGTCCCCTCAAA 59.041 37.500 0.00 0.00 35.83 2.69
3350 7820 4.541705 TGAACAGATTTTTGTCCCCTCAA 58.458 39.130 0.00 0.00 0.00 3.02
3351 7821 4.177537 TGAACAGATTTTTGTCCCCTCA 57.822 40.909 0.00 0.00 0.00 3.86
3352 7822 5.011023 ACATTGAACAGATTTTTGTCCCCTC 59.989 40.000 0.00 0.00 0.00 4.30
3353 7823 4.901250 ACATTGAACAGATTTTTGTCCCCT 59.099 37.500 0.00 0.00 0.00 4.79
3354 7824 5.213891 ACATTGAACAGATTTTTGTCCCC 57.786 39.130 0.00 0.00 0.00 4.81
3359 7829 6.506147 TCAGGTGACATTGAACAGATTTTTG 58.494 36.000 0.00 0.00 0.00 2.44
3361 7831 6.906157 ATCAGGTGACATTGAACAGATTTT 57.094 33.333 0.00 0.00 0.00 1.82
3371 7841 6.580788 AGATCTCAACTATCAGGTGACATTG 58.419 40.000 0.00 0.00 36.94 2.82
3375 7845 5.127845 TCCAAGATCTCAACTATCAGGTGAC 59.872 44.000 0.00 0.00 36.94 3.67
3416 7886 6.265196 ACCTACACACAACATGACAATGAAAT 59.735 34.615 0.00 0.00 37.24 2.17
3432 7902 4.448210 TCTGGAAACTGAAACCTACACAC 58.552 43.478 0.00 0.00 35.13 3.82
3485 7955 1.260538 ACTGCAGCTAGCTAGTGCCA 61.261 55.000 29.28 21.14 45.94 4.92
3486 7956 0.107945 AACTGCAGCTAGCTAGTGCC 60.108 55.000 29.28 18.99 45.94 5.01
3490 7960 2.275318 GTGGAAACTGCAGCTAGCTAG 58.725 52.381 18.86 16.84 45.94 3.42
3491 7961 1.066143 GGTGGAAACTGCAGCTAGCTA 60.066 52.381 18.86 1.19 45.94 3.32
3492 7962 0.322008 GGTGGAAACTGCAGCTAGCT 60.322 55.000 12.68 12.68 45.94 3.32
3493 7963 0.606401 TGGTGGAAACTGCAGCTAGC 60.606 55.000 15.27 6.62 45.96 3.42
3494 7964 1.271054 ACTGGTGGAAACTGCAGCTAG 60.271 52.381 15.27 6.11 37.12 3.42
3498 7968 0.947244 GTCACTGGTGGAAACTGCAG 59.053 55.000 13.48 13.48 0.00 4.41
3514 7984 2.343758 GGCTCTCAGTTGCGGTCA 59.656 61.111 0.00 0.00 0.00 4.02
3518 7988 1.135046 CATATCGGCTCTCAGTTGCG 58.865 55.000 0.00 0.00 0.00 4.85
3519 7989 0.864455 GCATATCGGCTCTCAGTTGC 59.136 55.000 0.00 0.00 0.00 4.17
3522 7992 2.763933 CATTGCATATCGGCTCTCAGT 58.236 47.619 0.00 0.00 34.04 3.41
3549 8019 1.424403 TTAGACCAACATCACACGCG 58.576 50.000 3.53 3.53 0.00 6.01
3575 8045 6.875726 TCACATTCTTATTCAGAGAACCACAG 59.124 38.462 0.00 0.00 36.08 3.66
3581 8051 6.825213 CCACCATCACATTCTTATTCAGAGAA 59.175 38.462 0.00 0.00 37.52 2.87
3598 8068 1.074775 GCCAACAGGACCACCATCA 59.925 57.895 0.00 0.00 38.94 3.07
3642 8112 8.049117 TCTAGCACATCACCAAAAGATAGAAAT 58.951 33.333 0.00 0.00 0.00 2.17
3654 8124 6.403866 AAAACATTTTCTAGCACATCACCA 57.596 33.333 0.00 0.00 0.00 4.17
3674 8144 2.121291 TGCACCACACAGTCAGAAAA 57.879 45.000 0.00 0.00 0.00 2.29
3678 8148 0.940126 GAGTTGCACCACACAGTCAG 59.060 55.000 0.00 0.00 0.00 3.51
3681 8152 1.097547 GCTGAGTTGCACCACACAGT 61.098 55.000 14.74 0.00 37.60 3.55
3719 8190 4.280436 TGACCAACCATTACGACTTCAT 57.720 40.909 0.00 0.00 0.00 2.57
3769 10000 5.649782 AATAAACTCATGCAGTCAAAGGG 57.350 39.130 0.00 0.00 32.30 3.95
3791 10022 7.182060 AGAAATAAAGCAATACTCTGGGGAAA 58.818 34.615 0.00 0.00 0.00 3.13
3811 10042 9.023962 AGAGCGAGAGATGATCTATAAAGAAAT 57.976 33.333 0.00 0.00 38.84 2.17
3812 10043 8.402798 AGAGCGAGAGATGATCTATAAAGAAA 57.597 34.615 0.00 0.00 38.84 2.52
3813 10044 7.994425 AGAGCGAGAGATGATCTATAAAGAA 57.006 36.000 0.00 0.00 38.84 2.52
3814 10045 9.679661 AATAGAGCGAGAGATGATCTATAAAGA 57.320 33.333 0.00 0.00 38.84 2.52
3819 10050 9.461312 AACTAAATAGAGCGAGAGATGATCTAT 57.539 33.333 0.00 0.00 38.84 1.98
3820 10051 8.856153 AACTAAATAGAGCGAGAGATGATCTA 57.144 34.615 0.00 0.00 38.84 1.98
3821 10052 7.759489 AACTAAATAGAGCGAGAGATGATCT 57.241 36.000 0.00 0.00 42.61 2.75
3822 10053 8.698854 CAAAACTAAATAGAGCGAGAGATGATC 58.301 37.037 0.00 0.00 0.00 2.92
3823 10054 7.170658 GCAAAACTAAATAGAGCGAGAGATGAT 59.829 37.037 0.00 0.00 0.00 2.45
3824 10055 6.477033 GCAAAACTAAATAGAGCGAGAGATGA 59.523 38.462 0.00 0.00 0.00 2.92
3825 10056 6.478344 AGCAAAACTAAATAGAGCGAGAGATG 59.522 38.462 0.00 0.00 0.00 2.90
3826 10057 6.578023 AGCAAAACTAAATAGAGCGAGAGAT 58.422 36.000 0.00 0.00 0.00 2.75
3827 10058 5.967088 AGCAAAACTAAATAGAGCGAGAGA 58.033 37.500 0.00 0.00 0.00 3.10
3868 10099 5.934781 ACATCTCATCCAAAAGATAGTCCC 58.065 41.667 0.00 0.00 32.37 4.46
3898 10129 1.221466 GCGTTCACTGTGTGCAGCTA 61.221 55.000 7.79 0.00 46.30 3.32
3925 10156 0.821517 TATCCTGACATGACGCCGTT 59.178 50.000 0.00 0.00 0.00 4.44
3927 10158 0.668535 TCTATCCTGACATGACGCCG 59.331 55.000 0.00 0.00 0.00 6.46
4046 10278 1.721389 CGATCATCGGTGCTATTTCCG 59.279 52.381 0.00 0.00 46.93 4.30
4060 10292 7.432869 TCAAGAAACAAAATCCAAACGATCAT 58.567 30.769 0.00 0.00 0.00 2.45
4061 10293 6.800543 TCAAGAAACAAAATCCAAACGATCA 58.199 32.000 0.00 0.00 0.00 2.92
4066 10298 6.454981 CGTGGTTCAAGAAACAAAATCCAAAC 60.455 38.462 1.52 0.00 40.07 2.93
4091 10324 3.652057 TCTCCCCAAATCCACAAGATC 57.348 47.619 0.00 0.00 32.47 2.75
4112 10346 7.775561 ACAAAGACTATGTTCCACTTTTCTCTT 59.224 33.333 0.00 0.00 0.00 2.85
4129 10363 5.621193 AGCAGCCTTTTTCTACAAAGACTA 58.379 37.500 0.00 0.00 36.03 2.59
4159 10393 1.118965 ATGACGTGTGTCCCCACTGA 61.119 55.000 0.00 0.00 44.86 3.41
4172 10406 0.685097 ACCCACTAAGCACATGACGT 59.315 50.000 0.00 0.00 0.00 4.34
4173 10407 1.066858 AGACCCACTAAGCACATGACG 60.067 52.381 0.00 0.00 0.00 4.35
4175 10409 3.701542 CTCTAGACCCACTAAGCACATGA 59.298 47.826 0.00 0.00 0.00 3.07
4200 10435 6.867662 AAATCGTATCAGATAAGGGCTTTG 57.132 37.500 3.80 0.00 0.00 2.77
4224 10459 7.184106 GCTAATAATTGTCGTGATCGGAAAAA 58.816 34.615 0.00 0.00 37.69 1.94
4253 10488 6.796705 TCATCTCTCGCAATCGTACTATAA 57.203 37.500 0.00 0.00 36.96 0.98
4280 10515 0.032403 CCCATGTGCCATTATTGCCG 59.968 55.000 0.00 0.00 0.00 5.69
4292 10527 2.313317 CATCCCTCAATTCCCCATGTG 58.687 52.381 0.00 0.00 0.00 3.21
4299 10534 2.196245 GGCGCCATCCCTCAATTCC 61.196 63.158 24.80 0.00 0.00 3.01
4320 10555 2.544685 CACAAGGGAAGAGCATACGAG 58.455 52.381 0.00 0.00 0.00 4.18
4325 10560 2.683211 AAACCACAAGGGAAGAGCAT 57.317 45.000 0.00 0.00 41.15 3.79
4332 10567 3.330110 TCCCGTATTTAAACCACAAGGGA 59.670 43.478 10.81 10.81 42.52 4.20
4399 10634 2.436646 AAGCTCCGTCCGCCAATG 60.437 61.111 0.00 0.00 0.00 2.82
4446 10681 0.672401 GGGAACCGCAAAGTCGATCA 60.672 55.000 0.00 0.00 40.86 2.92
4467 10702 8.954950 AATAATCAGTAGACACATGAGAAAGG 57.045 34.615 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.