Multiple sequence alignment - TraesCS6B01G404600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G404600 chr6B 100.000 2582 0 0 1 2582 680185524 680182943 0.000000e+00 4769
1 TraesCS6B01G404600 chr6B 90.833 120 6 3 8 122 478751423 478751304 3.440000e-34 156
2 TraesCS6B01G404600 chr6B 87.407 135 12 5 1 130 385557769 385557635 1.600000e-32 150
3 TraesCS6B01G404600 chr4D 92.720 2184 144 11 408 2580 481887026 481889205 0.000000e+00 3138
4 TraesCS6B01G404600 chr4D 88.060 134 9 4 8 134 177889470 177889337 4.450000e-33 152
5 TraesCS6B01G404600 chr1D 92.466 2190 135 15 407 2580 278102468 278100293 0.000000e+00 3103
6 TraesCS6B01G404600 chr1D 91.171 2186 175 10 406 2580 250223366 250225544 0.000000e+00 2952
7 TraesCS6B01G404600 chr6D 92.470 2178 143 12 407 2575 325418869 325416704 0.000000e+00 3094
8 TraesCS6B01G404600 chr6D 87.143 140 11 5 1 133 143495987 143495848 4.450000e-33 152
9 TraesCS6B01G404600 chr3B 92.216 2184 157 10 407 2580 168094228 168096408 0.000000e+00 3079
10 TraesCS6B01G404600 chr2D 92.213 2183 154 14 407 2580 350066011 350068186 0.000000e+00 3075
11 TraesCS6B01G404600 chr2D 88.462 130 8 6 8 130 587694478 587694349 1.600000e-32 150
12 TraesCS6B01G404600 chr3D 91.191 2191 166 21 404 2580 442775025 442772848 0.000000e+00 2952
13 TraesCS6B01G404600 chr4B 91.239 2180 172 15 407 2580 671183087 671185253 0.000000e+00 2950
14 TraesCS6B01G404600 chr7D 91.104 2192 164 16 407 2580 54236976 54239154 0.000000e+00 2939
15 TraesCS6B01G404600 chr6A 89.630 135 9 4 1 130 234192488 234192354 1.590000e-37 167
16 TraesCS6B01G404600 chr4A 91.667 120 5 3 8 122 647356432 647356551 7.390000e-36 161
17 TraesCS6B01G404600 chr4A 90.833 120 6 3 8 122 681652384 681652265 3.440000e-34 156
18 TraesCS6B01G404600 chr5B 90.833 120 7 3 8 123 663242291 663242172 9.560000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G404600 chr6B 680182943 680185524 2581 True 4769 4769 100.000 1 2582 1 chr6B.!!$R3 2581
1 TraesCS6B01G404600 chr4D 481887026 481889205 2179 False 3138 3138 92.720 408 2580 1 chr4D.!!$F1 2172
2 TraesCS6B01G404600 chr1D 278100293 278102468 2175 True 3103 3103 92.466 407 2580 1 chr1D.!!$R1 2173
3 TraesCS6B01G404600 chr1D 250223366 250225544 2178 False 2952 2952 91.171 406 2580 1 chr1D.!!$F1 2174
4 TraesCS6B01G404600 chr6D 325416704 325418869 2165 True 3094 3094 92.470 407 2575 1 chr6D.!!$R2 2168
5 TraesCS6B01G404600 chr3B 168094228 168096408 2180 False 3079 3079 92.216 407 2580 1 chr3B.!!$F1 2173
6 TraesCS6B01G404600 chr2D 350066011 350068186 2175 False 3075 3075 92.213 407 2580 1 chr2D.!!$F1 2173
7 TraesCS6B01G404600 chr3D 442772848 442775025 2177 True 2952 2952 91.191 404 2580 1 chr3D.!!$R1 2176
8 TraesCS6B01G404600 chr4B 671183087 671185253 2166 False 2950 2950 91.239 407 2580 1 chr4B.!!$F1 2173
9 TraesCS6B01G404600 chr7D 54236976 54239154 2178 False 2939 2939 91.104 407 2580 1 chr7D.!!$F1 2173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 684 0.033109 GCCAAATTAGCCTCACCCCT 60.033 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1615 0.751277 TGCCCCAATGCAATCGTAGG 60.751 55.0 0.0 0.0 38.56 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.589958 TGAAGATAAGACTAAGAGATGACCC 57.410 40.000 0.00 0.00 0.00 4.46
52 53 7.126061 TGAAGATAAGACTAAGAGATGACCCA 58.874 38.462 0.00 0.00 0.00 4.51
53 54 7.786943 TGAAGATAAGACTAAGAGATGACCCAT 59.213 37.037 0.00 0.00 0.00 4.00
54 55 8.560124 AAGATAAGACTAAGAGATGACCCATT 57.440 34.615 0.00 0.00 0.00 3.16
55 56 7.961351 AGATAAGACTAAGAGATGACCCATTG 58.039 38.462 0.00 0.00 0.00 2.82
56 57 7.566879 AGATAAGACTAAGAGATGACCCATTGT 59.433 37.037 0.00 0.00 0.00 2.71
57 58 8.783660 ATAAGACTAAGAGATGACCCATTGTA 57.216 34.615 0.00 0.00 0.00 2.41
58 59 6.723298 AGACTAAGAGATGACCCATTGTAG 57.277 41.667 0.00 0.00 0.00 2.74
59 60 6.436027 AGACTAAGAGATGACCCATTGTAGA 58.564 40.000 0.00 0.00 0.00 2.59
60 61 6.322712 AGACTAAGAGATGACCCATTGTAGAC 59.677 42.308 0.00 0.00 0.00 2.59
61 62 6.198639 ACTAAGAGATGACCCATTGTAGACT 58.801 40.000 0.00 0.00 0.00 3.24
62 63 6.670027 ACTAAGAGATGACCCATTGTAGACTT 59.330 38.462 0.00 0.00 0.00 3.01
63 64 6.380079 AAGAGATGACCCATTGTAGACTTT 57.620 37.500 0.00 0.00 0.00 2.66
64 65 6.380079 AGAGATGACCCATTGTAGACTTTT 57.620 37.500 0.00 0.00 0.00 2.27
65 66 6.784031 AGAGATGACCCATTGTAGACTTTTT 58.216 36.000 0.00 0.00 0.00 1.94
89 90 9.897744 TTTTTGTCATCTCTAAATTACAAGCAG 57.102 29.630 0.00 0.00 27.79 4.24
90 91 8.846943 TTTGTCATCTCTAAATTACAAGCAGA 57.153 30.769 0.00 0.00 27.79 4.26
91 92 7.834068 TGTCATCTCTAAATTACAAGCAGAC 57.166 36.000 0.00 0.00 0.00 3.51
92 93 7.615403 TGTCATCTCTAAATTACAAGCAGACT 58.385 34.615 0.00 0.00 0.00 3.24
93 94 8.097038 TGTCATCTCTAAATTACAAGCAGACTT 58.903 33.333 0.00 0.00 36.19 3.01
94 95 8.599774 GTCATCTCTAAATTACAAGCAGACTTC 58.400 37.037 0.00 0.00 32.29 3.01
95 96 8.314021 TCATCTCTAAATTACAAGCAGACTTCA 58.686 33.333 0.00 0.00 32.29 3.02
96 97 8.939929 CATCTCTAAATTACAAGCAGACTTCAA 58.060 33.333 0.00 0.00 32.29 2.69
97 98 9.678260 ATCTCTAAATTACAAGCAGACTTCAAT 57.322 29.630 0.00 0.00 32.29 2.57
103 104 8.854614 AATTACAAGCAGACTTCAATAAGACT 57.145 30.769 0.00 0.00 38.09 3.24
104 105 9.944376 AATTACAAGCAGACTTCAATAAGACTA 57.056 29.630 0.00 0.00 35.88 2.59
105 106 8.758633 TTACAAGCAGACTTCAATAAGACTAC 57.241 34.615 0.00 0.00 35.88 2.73
106 107 6.166982 ACAAGCAGACTTCAATAAGACTACC 58.833 40.000 0.00 0.00 35.88 3.18
107 108 6.014156 ACAAGCAGACTTCAATAAGACTACCT 60.014 38.462 0.00 0.00 35.88 3.08
108 109 6.613153 AGCAGACTTCAATAAGACTACCTT 57.387 37.500 0.00 0.00 35.88 3.50
109 110 7.719871 AGCAGACTTCAATAAGACTACCTTA 57.280 36.000 0.00 0.00 41.23 2.69
111 112 8.417884 AGCAGACTTCAATAAGACTACCTTATC 58.582 37.037 0.00 0.00 44.94 1.75
112 113 8.198109 GCAGACTTCAATAAGACTACCTTATCA 58.802 37.037 0.00 0.00 44.94 2.15
115 116 9.315525 GACTTCAATAAGACTACCTTATCAACC 57.684 37.037 0.00 0.00 44.94 3.77
116 117 8.822805 ACTTCAATAAGACTACCTTATCAACCA 58.177 33.333 0.00 0.00 44.94 3.67
117 118 9.838339 CTTCAATAAGACTACCTTATCAACCAT 57.162 33.333 0.00 0.00 44.94 3.55
119 120 9.613428 TCAATAAGACTACCTTATCAACCATTG 57.387 33.333 0.00 0.00 44.94 2.82
120 121 9.396022 CAATAAGACTACCTTATCAACCATTGT 57.604 33.333 0.00 0.00 44.94 2.71
123 124 8.964476 AAGACTACCTTATCAACCATTGTATG 57.036 34.615 0.00 0.00 32.24 2.39
124 125 6.992715 AGACTACCTTATCAACCATTGTATGC 59.007 38.462 0.00 0.00 0.00 3.14
125 126 5.758296 ACTACCTTATCAACCATTGTATGCG 59.242 40.000 0.00 0.00 0.00 4.73
126 127 3.315191 ACCTTATCAACCATTGTATGCGC 59.685 43.478 0.00 0.00 0.00 6.09
127 128 3.565482 CCTTATCAACCATTGTATGCGCT 59.435 43.478 9.73 0.00 0.00 5.92
128 129 4.036734 CCTTATCAACCATTGTATGCGCTT 59.963 41.667 9.73 4.59 0.00 4.68
129 130 5.238432 CCTTATCAACCATTGTATGCGCTTA 59.762 40.000 9.73 3.30 0.00 3.09
130 131 6.238621 CCTTATCAACCATTGTATGCGCTTAA 60.239 38.462 9.73 0.00 0.00 1.85
131 132 5.574891 ATCAACCATTGTATGCGCTTAAA 57.425 34.783 9.73 0.00 0.00 1.52
132 133 4.980590 TCAACCATTGTATGCGCTTAAAG 58.019 39.130 9.73 0.00 0.00 1.85
133 134 3.420839 ACCATTGTATGCGCTTAAAGC 57.579 42.857 9.73 0.00 38.02 3.51
155 156 5.058149 CAAATAATGCAGTGCAGTTACCA 57.942 39.130 24.52 5.72 43.65 3.25
156 157 5.653507 CAAATAATGCAGTGCAGTTACCAT 58.346 37.500 24.52 8.09 43.65 3.55
157 158 5.505173 AATAATGCAGTGCAGTTACCATC 57.495 39.130 24.52 0.00 43.65 3.51
158 159 1.372582 ATGCAGTGCAGTTACCATCG 58.627 50.000 24.20 0.00 43.65 3.84
159 160 0.034756 TGCAGTGCAGTTACCATCGT 59.965 50.000 15.37 0.00 33.32 3.73
160 161 1.156736 GCAGTGCAGTTACCATCGTT 58.843 50.000 11.09 0.00 0.00 3.85
161 162 1.135972 GCAGTGCAGTTACCATCGTTG 60.136 52.381 11.09 0.00 0.00 4.10
162 163 2.143122 CAGTGCAGTTACCATCGTTGT 58.857 47.619 0.00 0.00 0.00 3.32
163 164 2.096268 CAGTGCAGTTACCATCGTTGTG 60.096 50.000 0.00 0.00 0.00 3.33
164 165 1.871039 GTGCAGTTACCATCGTTGTGT 59.129 47.619 0.00 0.00 0.00 3.72
165 166 2.289547 GTGCAGTTACCATCGTTGTGTT 59.710 45.455 0.00 0.00 0.00 3.32
166 167 2.289274 TGCAGTTACCATCGTTGTGTTG 59.711 45.455 0.00 0.00 0.00 3.33
167 168 2.289547 GCAGTTACCATCGTTGTGTTGT 59.710 45.455 0.00 0.00 0.00 3.32
168 169 3.848191 GCAGTTACCATCGTTGTGTTGTG 60.848 47.826 0.00 0.00 0.00 3.33
169 170 3.311322 CAGTTACCATCGTTGTGTTGTGT 59.689 43.478 0.00 0.00 0.00 3.72
170 171 3.558418 AGTTACCATCGTTGTGTTGTGTC 59.442 43.478 0.00 0.00 0.00 3.67
171 172 2.031258 ACCATCGTTGTGTTGTGTCA 57.969 45.000 0.00 0.00 0.00 3.58
172 173 1.939934 ACCATCGTTGTGTTGTGTCAG 59.060 47.619 0.00 0.00 0.00 3.51
173 174 1.334059 CCATCGTTGTGTTGTGTCAGC 60.334 52.381 0.00 0.00 0.00 4.26
174 175 1.330213 CATCGTTGTGTTGTGTCAGCA 59.670 47.619 0.00 0.00 0.00 4.41
175 176 1.443802 TCGTTGTGTTGTGTCAGCAA 58.556 45.000 0.00 0.00 0.00 3.91
176 177 1.807142 TCGTTGTGTTGTGTCAGCAAA 59.193 42.857 0.00 0.00 0.00 3.68
177 178 2.226674 TCGTTGTGTTGTGTCAGCAAAA 59.773 40.909 0.00 0.00 0.00 2.44
178 179 2.983136 CGTTGTGTTGTGTCAGCAAAAA 59.017 40.909 0.00 0.00 0.00 1.94
201 202 4.778143 CGGGTTCCGGGCCTTCTG 62.778 72.222 0.84 0.00 44.15 3.02
202 203 4.426313 GGGTTCCGGGCCTTCTGG 62.426 72.222 0.84 0.00 43.43 3.86
218 219 2.997897 GGCCCGGCCGATAGAGAT 60.998 66.667 30.73 0.00 39.62 2.75
219 220 2.262915 GCCCGGCCGATAGAGATG 59.737 66.667 30.73 6.78 39.76 2.90
220 221 2.262915 CCCGGCCGATAGAGATGC 59.737 66.667 30.73 0.00 39.76 3.91
221 222 2.262915 CCGGCCGATAGAGATGCC 59.737 66.667 30.73 0.00 40.54 4.40
222 223 2.574018 CCGGCCGATAGAGATGCCA 61.574 63.158 30.73 0.00 44.22 4.92
223 224 1.080230 CGGCCGATAGAGATGCCAG 60.080 63.158 24.07 0.00 44.22 4.85
224 225 1.810606 CGGCCGATAGAGATGCCAGT 61.811 60.000 24.07 0.00 44.22 4.00
225 226 0.037790 GGCCGATAGAGATGCCAGTC 60.038 60.000 0.00 0.00 43.46 3.51
226 227 0.387878 GCCGATAGAGATGCCAGTCG 60.388 60.000 0.00 0.00 39.76 4.18
227 228 0.387878 CCGATAGAGATGCCAGTCGC 60.388 60.000 0.00 0.00 39.76 5.19
228 229 0.387878 CGATAGAGATGCCAGTCGCC 60.388 60.000 0.00 0.00 35.02 5.54
229 230 0.037790 GATAGAGATGCCAGTCGCCC 60.038 60.000 0.00 0.00 36.24 6.13
230 231 1.476007 ATAGAGATGCCAGTCGCCCC 61.476 60.000 0.00 0.00 36.24 5.80
231 232 2.871795 TAGAGATGCCAGTCGCCCCA 62.872 60.000 0.00 0.00 36.24 4.96
232 233 3.746949 GAGATGCCAGTCGCCCCAG 62.747 68.421 0.00 0.00 36.24 4.45
233 234 4.864334 GATGCCAGTCGCCCCAGG 62.864 72.222 0.00 0.00 36.24 4.45
243 244 2.437895 GCCCCAGGCTAACCGAAC 60.438 66.667 0.00 0.00 46.69 3.95
244 245 3.074281 CCCCAGGCTAACCGAACA 58.926 61.111 0.00 0.00 42.76 3.18
245 246 1.607612 CCCCAGGCTAACCGAACAT 59.392 57.895 0.00 0.00 42.76 2.71
246 247 0.748005 CCCCAGGCTAACCGAACATG 60.748 60.000 0.00 0.00 42.76 3.21
247 248 0.748005 CCCAGGCTAACCGAACATGG 60.748 60.000 0.00 0.00 42.76 3.66
248 249 1.376609 CCAGGCTAACCGAACATGGC 61.377 60.000 0.00 0.00 42.76 4.40
249 250 1.449601 AGGCTAACCGAACATGGCG 60.450 57.895 0.00 0.00 42.76 5.69
250 251 2.403586 GCTAACCGAACATGGCGC 59.596 61.111 0.00 0.00 0.00 6.53
251 252 2.701006 CTAACCGAACATGGCGCG 59.299 61.111 0.00 0.00 0.00 6.86
252 253 2.048033 TAACCGAACATGGCGCGT 60.048 55.556 8.43 0.00 0.00 6.01
253 254 0.802994 CTAACCGAACATGGCGCGTA 60.803 55.000 8.43 0.00 0.00 4.42
254 255 0.802994 TAACCGAACATGGCGCGTAG 60.803 55.000 8.43 0.00 0.00 3.51
255 256 3.261951 CCGAACATGGCGCGTAGG 61.262 66.667 8.43 1.22 0.00 3.18
256 257 2.508439 CGAACATGGCGCGTAGGT 60.508 61.111 8.43 1.96 0.00 3.08
257 258 2.798501 CGAACATGGCGCGTAGGTG 61.799 63.158 8.43 4.64 0.00 4.00
265 266 2.410060 CGCGTAGGTGCCATCGTA 59.590 61.111 0.00 0.00 0.00 3.43
266 267 1.942712 CGCGTAGGTGCCATCGTAC 60.943 63.158 0.00 0.00 0.00 3.67
267 268 4.297071 CGTAGGTGCCATCGTACG 57.703 61.111 9.53 9.53 42.51 3.67
268 269 1.298863 CGTAGGTGCCATCGTACGG 60.299 63.158 16.52 0.00 43.59 4.02
269 270 1.811860 GTAGGTGCCATCGTACGGT 59.188 57.895 16.52 4.91 0.00 4.83
270 271 0.174162 GTAGGTGCCATCGTACGGTT 59.826 55.000 16.52 0.04 0.00 4.44
271 272 0.173935 TAGGTGCCATCGTACGGTTG 59.826 55.000 16.52 13.17 0.00 3.77
272 273 1.375013 GGTGCCATCGTACGGTTGT 60.375 57.895 16.52 0.00 0.00 3.32
273 274 1.356527 GGTGCCATCGTACGGTTGTC 61.357 60.000 16.52 4.37 0.00 3.18
274 275 0.389426 GTGCCATCGTACGGTTGTCT 60.389 55.000 16.52 0.00 0.00 3.41
275 276 0.108992 TGCCATCGTACGGTTGTCTC 60.109 55.000 16.52 6.02 0.00 3.36
276 277 0.108992 GCCATCGTACGGTTGTCTCA 60.109 55.000 16.52 0.00 0.00 3.27
277 278 1.470979 GCCATCGTACGGTTGTCTCAT 60.471 52.381 16.52 0.00 0.00 2.90
278 279 2.193447 CCATCGTACGGTTGTCTCATG 58.807 52.381 16.52 8.74 0.00 3.07
279 280 2.416836 CCATCGTACGGTTGTCTCATGT 60.417 50.000 16.52 0.00 0.00 3.21
280 281 2.624316 TCGTACGGTTGTCTCATGTC 57.376 50.000 16.52 0.00 0.00 3.06
281 282 1.881324 TCGTACGGTTGTCTCATGTCA 59.119 47.619 16.52 0.00 0.00 3.58
282 283 1.983605 CGTACGGTTGTCTCATGTCAC 59.016 52.381 7.57 0.00 0.00 3.67
283 284 2.606065 CGTACGGTTGTCTCATGTCACA 60.606 50.000 7.57 0.00 0.00 3.58
284 285 2.839486 ACGGTTGTCTCATGTCACAT 57.161 45.000 0.00 0.00 0.00 3.21
285 286 2.688507 ACGGTTGTCTCATGTCACATC 58.311 47.619 0.00 0.00 0.00 3.06
286 287 1.655597 CGGTTGTCTCATGTCACATCG 59.344 52.381 0.00 1.52 0.00 3.84
287 288 2.688507 GGTTGTCTCATGTCACATCGT 58.311 47.619 0.00 0.00 0.00 3.73
288 289 2.413112 GGTTGTCTCATGTCACATCGTG 59.587 50.000 0.00 0.00 34.45 4.35
289 290 3.059884 GTTGTCTCATGTCACATCGTGT 58.940 45.455 0.00 0.00 34.79 4.49
290 291 4.234574 GTTGTCTCATGTCACATCGTGTA 58.765 43.478 0.00 0.00 34.79 2.90
291 292 4.513198 TGTCTCATGTCACATCGTGTAA 57.487 40.909 0.00 0.00 34.79 2.41
292 293 5.072040 TGTCTCATGTCACATCGTGTAAT 57.928 39.130 0.00 0.00 34.79 1.89
293 294 5.478407 TGTCTCATGTCACATCGTGTAATT 58.522 37.500 0.00 0.00 34.79 1.40
294 295 6.626302 TGTCTCATGTCACATCGTGTAATTA 58.374 36.000 0.00 0.00 34.79 1.40
295 296 6.751888 TGTCTCATGTCACATCGTGTAATTAG 59.248 38.462 0.00 0.00 34.79 1.73
296 297 6.752351 GTCTCATGTCACATCGTGTAATTAGT 59.248 38.462 0.00 0.00 34.79 2.24
297 298 6.972901 TCTCATGTCACATCGTGTAATTAGTC 59.027 38.462 0.00 0.00 34.79 2.59
298 299 6.040247 TCATGTCACATCGTGTAATTAGTCC 58.960 40.000 0.00 0.00 34.79 3.85
299 300 5.654603 TGTCACATCGTGTAATTAGTCCT 57.345 39.130 0.00 0.00 34.79 3.85
300 301 5.407502 TGTCACATCGTGTAATTAGTCCTG 58.592 41.667 0.00 0.00 34.79 3.86
301 302 5.184287 TGTCACATCGTGTAATTAGTCCTGA 59.816 40.000 0.00 0.00 34.79 3.86
302 303 6.097356 GTCACATCGTGTAATTAGTCCTGAA 58.903 40.000 0.00 0.00 34.79 3.02
303 304 6.034683 GTCACATCGTGTAATTAGTCCTGAAC 59.965 42.308 0.00 0.00 34.79 3.18
304 305 5.004440 CACATCGTGTAATTAGTCCTGAACG 59.996 44.000 0.00 0.00 0.00 3.95
305 306 4.771590 TCGTGTAATTAGTCCTGAACGT 57.228 40.909 0.00 0.00 0.00 3.99
306 307 4.726416 TCGTGTAATTAGTCCTGAACGTC 58.274 43.478 0.00 0.00 0.00 4.34
307 308 4.456911 TCGTGTAATTAGTCCTGAACGTCT 59.543 41.667 0.00 0.00 0.00 4.18
308 309 4.792189 CGTGTAATTAGTCCTGAACGTCTC 59.208 45.833 0.00 0.00 0.00 3.36
309 310 5.391736 CGTGTAATTAGTCCTGAACGTCTCT 60.392 44.000 0.00 0.00 0.00 3.10
310 311 6.388278 GTGTAATTAGTCCTGAACGTCTCTT 58.612 40.000 0.00 0.00 0.00 2.85
311 312 7.533426 GTGTAATTAGTCCTGAACGTCTCTTA 58.467 38.462 0.00 0.00 0.00 2.10
312 313 8.025445 GTGTAATTAGTCCTGAACGTCTCTTAA 58.975 37.037 0.00 0.00 0.00 1.85
313 314 8.579006 TGTAATTAGTCCTGAACGTCTCTTAAA 58.421 33.333 0.00 0.00 0.00 1.52
314 315 9.415544 GTAATTAGTCCTGAACGTCTCTTAAAA 57.584 33.333 0.00 0.00 0.00 1.52
315 316 8.897872 AATTAGTCCTGAACGTCTCTTAAAAA 57.102 30.769 0.00 0.00 0.00 1.94
340 341 1.590147 AGGTTACTCCTGAACGCCG 59.410 57.895 0.00 0.00 46.19 6.46
341 342 0.896940 AGGTTACTCCTGAACGCCGA 60.897 55.000 0.00 0.00 46.19 5.54
342 343 0.037975 GGTTACTCCTGAACGCCGAA 60.038 55.000 0.00 0.00 0.00 4.30
343 344 1.405121 GGTTACTCCTGAACGCCGAAT 60.405 52.381 0.00 0.00 0.00 3.34
344 345 1.659098 GTTACTCCTGAACGCCGAATG 59.341 52.381 0.00 0.00 0.00 2.67
345 346 0.892755 TACTCCTGAACGCCGAATGT 59.107 50.000 0.00 0.00 0.00 2.71
346 347 0.034896 ACTCCTGAACGCCGAATGTT 59.965 50.000 0.00 0.00 0.00 2.71
347 348 1.156736 CTCCTGAACGCCGAATGTTT 58.843 50.000 0.00 0.00 0.00 2.83
348 349 1.128692 CTCCTGAACGCCGAATGTTTC 59.871 52.381 0.00 0.00 0.00 2.78
349 350 0.168128 CCTGAACGCCGAATGTTTCC 59.832 55.000 0.00 0.00 0.00 3.13
350 351 0.871722 CTGAACGCCGAATGTTTCCA 59.128 50.000 0.00 0.00 0.00 3.53
351 352 1.468520 CTGAACGCCGAATGTTTCCAT 59.531 47.619 0.00 0.00 0.00 3.41
352 353 1.883275 TGAACGCCGAATGTTTCCATT 59.117 42.857 0.00 0.00 43.97 3.16
353 354 2.250188 GAACGCCGAATGTTTCCATTG 58.750 47.619 0.00 0.00 41.37 2.82
354 355 0.525761 ACGCCGAATGTTTCCATTGG 59.474 50.000 0.00 0.00 41.37 3.16
355 356 0.808125 CGCCGAATGTTTCCATTGGA 59.192 50.000 0.00 0.00 41.37 3.53
356 357 1.405105 CGCCGAATGTTTCCATTGGAT 59.595 47.619 6.15 0.00 41.37 3.41
357 358 2.616376 CGCCGAATGTTTCCATTGGATA 59.384 45.455 6.15 0.00 41.37 2.59
358 359 3.066064 CGCCGAATGTTTCCATTGGATAA 59.934 43.478 6.15 1.50 41.37 1.75
359 360 4.439426 CGCCGAATGTTTCCATTGGATAAA 60.439 41.667 6.15 0.00 41.37 1.40
360 361 5.600696 GCCGAATGTTTCCATTGGATAAAT 58.399 37.500 6.15 0.00 41.37 1.40
361 362 5.691754 GCCGAATGTTTCCATTGGATAAATC 59.308 40.000 6.15 1.67 41.37 2.17
362 363 5.914635 CCGAATGTTTCCATTGGATAAATCG 59.085 40.000 6.15 12.44 41.37 3.34
363 364 6.459573 CCGAATGTTTCCATTGGATAAATCGT 60.460 38.462 6.15 0.00 41.37 3.73
364 365 6.414694 CGAATGTTTCCATTGGATAAATCGTG 59.585 38.462 6.15 0.00 41.37 4.35
365 366 4.992688 TGTTTCCATTGGATAAATCGTGC 58.007 39.130 6.15 0.00 0.00 5.34
366 367 3.961477 TTCCATTGGATAAATCGTGCG 57.039 42.857 6.15 0.00 0.00 5.34
367 368 2.912771 TCCATTGGATAAATCGTGCGT 58.087 42.857 0.00 0.00 0.00 5.24
368 369 4.061357 TCCATTGGATAAATCGTGCGTA 57.939 40.909 0.00 0.00 0.00 4.42
369 370 3.805422 TCCATTGGATAAATCGTGCGTAC 59.195 43.478 0.00 0.00 0.00 3.67
378 379 3.737182 CGTGCGTACGTCTCACTG 58.263 61.111 18.32 8.99 44.99 3.66
379 380 1.082300 CGTGCGTACGTCTCACTGT 60.082 57.895 18.32 0.00 44.99 3.55
380 381 1.058590 CGTGCGTACGTCTCACTGTC 61.059 60.000 18.32 0.00 44.99 3.51
381 382 1.058590 GTGCGTACGTCTCACTGTCG 61.059 60.000 17.90 0.00 0.00 4.35
382 383 1.223417 TGCGTACGTCTCACTGTCGA 61.223 55.000 17.90 0.00 0.00 4.20
383 384 0.518764 GCGTACGTCTCACTGTCGAG 60.519 60.000 17.90 0.00 0.00 4.04
384 385 0.518764 CGTACGTCTCACTGTCGAGC 60.519 60.000 7.22 0.00 32.75 5.03
385 386 0.179194 GTACGTCTCACTGTCGAGCC 60.179 60.000 0.00 0.00 32.75 4.70
386 387 0.604511 TACGTCTCACTGTCGAGCCA 60.605 55.000 0.00 0.00 32.75 4.75
387 388 1.154131 CGTCTCACTGTCGAGCCAG 60.154 63.158 1.70 1.70 38.45 4.85
388 389 1.214062 GTCTCACTGTCGAGCCAGG 59.786 63.158 7.82 0.00 36.75 4.45
389 390 2.125753 CTCACTGTCGAGCCAGGC 60.126 66.667 1.84 1.84 36.75 4.85
390 391 3.655810 CTCACTGTCGAGCCAGGCC 62.656 68.421 8.22 0.00 36.75 5.19
391 392 4.007644 CACTGTCGAGCCAGGCCA 62.008 66.667 8.22 0.00 36.75 5.36
392 393 3.699894 ACTGTCGAGCCAGGCCAG 61.700 66.667 8.22 10.91 36.75 4.85
393 394 3.385384 CTGTCGAGCCAGGCCAGA 61.385 66.667 8.22 4.89 0.00 3.86
394 395 3.655810 CTGTCGAGCCAGGCCAGAC 62.656 68.421 23.34 23.34 36.50 3.51
395 396 4.459089 GTCGAGCCAGGCCAGACC 62.459 72.222 20.80 7.70 39.61 3.85
398 399 3.474570 GAGCCAGGCCAGACCGAT 61.475 66.667 8.22 0.00 46.52 4.18
399 400 2.041922 AGCCAGGCCAGACCGATA 60.042 61.111 8.22 0.00 46.52 2.92
400 401 2.109181 GCCAGGCCAGACCGATAC 59.891 66.667 5.01 0.00 46.52 2.24
401 402 2.435693 GCCAGGCCAGACCGATACT 61.436 63.158 5.01 0.00 46.52 2.12
402 403 1.742768 CCAGGCCAGACCGATACTC 59.257 63.158 5.01 0.00 46.52 2.59
403 404 1.742768 CAGGCCAGACCGATACTCC 59.257 63.158 5.01 0.00 46.52 3.85
404 405 0.757188 CAGGCCAGACCGATACTCCT 60.757 60.000 5.01 0.00 46.52 3.69
462 463 3.003763 GCACGGGAAGGGAGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
469 470 2.547990 GGGAAGGGAGAGGTCTGTTTA 58.452 52.381 0.00 0.00 0.00 2.01
475 476 2.303311 GGGAGAGGTCTGTTTAGTTGCT 59.697 50.000 0.00 0.00 0.00 3.91
486 487 6.038936 GTCTGTTTAGTTGCTTGGTTTTCCTA 59.961 38.462 0.00 0.00 41.38 2.94
495 496 3.880117 GCTTGGTTTTCCTATTGGGCCTA 60.880 47.826 4.53 0.00 41.38 3.93
545 546 1.915141 CTGGCTCACAGGAAATGGTT 58.085 50.000 0.00 0.00 43.70 3.67
553 554 1.354368 ACAGGAAATGGTTGGATCGGT 59.646 47.619 0.00 0.00 0.00 4.69
572 573 0.973632 TAGTTTCTCGCAAGCCAGGA 59.026 50.000 0.00 0.00 37.18 3.86
576 577 0.543277 TTCTCGCAAGCCAGGATGAT 59.457 50.000 0.00 0.00 35.43 2.45
579 580 0.035152 TCGCAAGCCAGGATGATTGT 60.035 50.000 0.00 0.00 35.76 2.71
643 646 1.801242 TGGCGGGAGATGGAAATCTA 58.199 50.000 0.00 0.00 0.00 1.98
651 654 0.880278 GATGGAAATCTAGCGCGCCA 60.880 55.000 30.33 14.89 0.00 5.69
658 661 4.363990 CTAGCGCGCCATCCCGAT 62.364 66.667 30.33 9.26 0.00 4.18
678 684 0.033109 GCCAAATTAGCCTCACCCCT 60.033 55.000 0.00 0.00 0.00 4.79
708 715 1.616327 TCACCCATAGCCACTGCCT 60.616 57.895 0.00 0.00 38.69 4.75
718 725 1.246737 GCCACTGCCTCCCTTTCTTG 61.247 60.000 0.00 0.00 0.00 3.02
754 761 2.258286 GCGGCGGCTGTGATTTTT 59.742 55.556 9.78 0.00 35.83 1.94
759 766 1.469767 GGCGGCTGTGATTTTTGATCC 60.470 52.381 0.00 0.00 0.00 3.36
767 776 5.484173 TGTGATTTTTGATCCGTGCTATC 57.516 39.130 0.00 0.00 0.00 2.08
775 784 3.973516 CCGTGCTATCGGCGGCTA 61.974 66.667 7.21 0.00 43.96 3.93
856 874 1.134580 CCGTCTGGTCGACCTAGTCTA 60.135 57.143 33.39 12.84 39.56 2.59
859 877 3.740452 CGTCTGGTCGACCTAGTCTATGA 60.740 52.174 33.39 15.51 39.56 2.15
874 893 2.114323 TCTATGACATGGCTCCCCCTAT 59.886 50.000 0.00 0.00 0.00 2.57
876 895 0.327480 TGACATGGCTCCCCCTATGT 60.327 55.000 0.00 0.00 37.75 2.29
1005 1025 4.395625 TCGATGTCGACTAGGTTATGGAT 58.604 43.478 17.92 0.00 44.22 3.41
1135 1155 2.244769 CCCTATGGTCCATTGTTTCCCT 59.755 50.000 10.33 0.00 0.00 4.20
1185 1205 7.105588 TGAACTACATCTACAACTGCAATGAT 58.894 34.615 6.19 0.00 0.00 2.45
1213 1233 2.877168 GCTCTGTGGATGCTTAGAATGG 59.123 50.000 0.00 0.00 0.00 3.16
1219 1239 4.943705 TGTGGATGCTTAGAATGGAAAGAC 59.056 41.667 0.00 0.00 0.00 3.01
1249 1269 0.390472 CAGGCTTGTCGAGACCTTCC 60.390 60.000 0.34 0.00 31.76 3.46
1359 1379 2.948979 GTTCAGGGTCATTCACAACACA 59.051 45.455 0.00 0.00 0.00 3.72
1512 1532 5.030147 TGGTATCCATACTTCAAGGTGAGT 58.970 41.667 0.00 0.00 33.81 3.41
1574 1596 6.639632 ATTGTTCAAGTTGAGCACTAACAT 57.360 33.333 20.49 9.46 37.33 2.71
1597 1619 2.772287 GCTAGTGATGCCAATCCCTAC 58.228 52.381 0.00 0.00 31.15 3.18
1652 1674 2.114616 CTGCCAGAGTTCCTAGGTCAT 58.885 52.381 9.08 0.00 0.00 3.06
1674 1696 1.153086 CTGCAGCATACAGGGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
1686 1711 0.834687 AGGGGGACGAAGCACTACAA 60.835 55.000 0.00 0.00 0.00 2.41
1745 1770 5.111989 TGAAGTTCACATATGTGCTAGCTC 58.888 41.667 27.71 19.31 45.25 4.09
1749 1774 2.884639 TCACATATGTGCTAGCTCGCTA 59.115 45.455 27.71 8.61 45.25 4.26
1797 1823 2.242043 TCTCACTGACAGCATGAGTCA 58.758 47.619 17.89 17.15 43.23 3.41
1817 1843 3.524789 TCAACCTGATGGGATCAACATCT 59.475 43.478 22.43 7.32 43.88 2.90
1845 1871 3.055094 GGCAAGTTCTACCTTGGAGATGA 60.055 47.826 3.39 0.00 41.70 2.92
1879 1905 0.463833 GGCTGGGTATTCTTCCACCG 60.464 60.000 0.00 0.00 35.53 4.94
1884 1910 2.372504 TGGGTATTCTTCCACCGTTCAA 59.627 45.455 0.00 0.00 35.53 2.69
1897 1923 4.261031 CCACCGTTCAAGAAAACAAGGTAG 60.261 45.833 0.00 0.00 0.00 3.18
1912 1938 3.963428 AGGTAGCATCTCAACGAGTTT 57.037 42.857 0.00 0.00 0.00 2.66
1914 1940 3.997021 AGGTAGCATCTCAACGAGTTTTG 59.003 43.478 0.00 0.00 0.00 2.44
1959 1985 3.753272 GCACAGGAGCTGTTTAATCTCAA 59.247 43.478 0.00 0.00 42.59 3.02
2013 2039 4.641989 GGCATTTGGAGCTCTGAAGAATAA 59.358 41.667 14.64 0.00 0.00 1.40
2020 2046 8.918202 TTGGAGCTCTGAAGAATAAGTTTAAA 57.082 30.769 14.64 0.00 0.00 1.52
2231 2258 1.341080 CAAAAGGTTGGAGTGGGCAT 58.659 50.000 0.00 0.00 0.00 4.40
2287 2353 8.114743 AGGATTTGAAGAAGATGGAAGAAGAAT 58.885 33.333 0.00 0.00 0.00 2.40
2294 2360 9.665719 GAAGAAGATGGAAGAAGAATAAGAAGT 57.334 33.333 0.00 0.00 0.00 3.01
2309 2381 1.135257 AGAAGTAGCAGCAGCAGTACG 60.135 52.381 3.17 0.00 45.49 3.67
2318 2390 1.691215 GCAGCAGTACGAGAAGCAGC 61.691 60.000 0.00 0.00 32.58 5.25
2423 2516 8.969267 GTCATTTGATAGTAGTTAGGATGAACG 58.031 37.037 0.00 0.00 34.36 3.95
2462 2555 2.710377 TGGCGCTACATGTTCAGATTT 58.290 42.857 7.64 0.00 0.00 2.17
2580 2673 1.007849 CCAAACGCCGGGTCAAAAG 60.008 57.895 2.18 0.00 0.00 2.27
2581 2674 1.730451 CCAAACGCCGGGTCAAAAGT 61.730 55.000 2.18 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.646900 GGGTCATCTCTTAGTCTTATCTTCAAT 58.353 37.037 0.00 0.00 0.00 2.57
26 27 7.619698 TGGGTCATCTCTTAGTCTTATCTTCAA 59.380 37.037 0.00 0.00 0.00 2.69
27 28 7.126061 TGGGTCATCTCTTAGTCTTATCTTCA 58.874 38.462 0.00 0.00 0.00 3.02
28 29 7.589958 TGGGTCATCTCTTAGTCTTATCTTC 57.410 40.000 0.00 0.00 0.00 2.87
29 30 8.428063 CAATGGGTCATCTCTTAGTCTTATCTT 58.572 37.037 0.00 0.00 0.00 2.40
30 31 7.566879 ACAATGGGTCATCTCTTAGTCTTATCT 59.433 37.037 0.00 0.00 0.00 1.98
31 32 7.731054 ACAATGGGTCATCTCTTAGTCTTATC 58.269 38.462 0.00 0.00 0.00 1.75
32 33 7.682787 ACAATGGGTCATCTCTTAGTCTTAT 57.317 36.000 0.00 0.00 0.00 1.73
33 34 8.059461 TCTACAATGGGTCATCTCTTAGTCTTA 58.941 37.037 0.00 0.00 0.00 2.10
34 35 6.897966 TCTACAATGGGTCATCTCTTAGTCTT 59.102 38.462 0.00 0.00 0.00 3.01
35 36 6.322712 GTCTACAATGGGTCATCTCTTAGTCT 59.677 42.308 0.00 0.00 0.00 3.24
36 37 6.322712 AGTCTACAATGGGTCATCTCTTAGTC 59.677 42.308 0.00 0.00 0.00 2.59
37 38 6.198639 AGTCTACAATGGGTCATCTCTTAGT 58.801 40.000 0.00 0.00 0.00 2.24
38 39 6.723298 AGTCTACAATGGGTCATCTCTTAG 57.277 41.667 0.00 0.00 0.00 2.18
39 40 7.496346 AAAGTCTACAATGGGTCATCTCTTA 57.504 36.000 0.00 0.00 0.00 2.10
40 41 6.380079 AAAGTCTACAATGGGTCATCTCTT 57.620 37.500 0.00 0.00 0.00 2.85
41 42 6.380079 AAAAGTCTACAATGGGTCATCTCT 57.620 37.500 0.00 0.00 0.00 3.10
63 64 9.897744 CTGCTTGTAATTTAGAGATGACAAAAA 57.102 29.630 0.00 0.00 31.57 1.94
64 65 9.283768 TCTGCTTGTAATTTAGAGATGACAAAA 57.716 29.630 0.00 0.00 31.57 2.44
65 66 8.721478 GTCTGCTTGTAATTTAGAGATGACAAA 58.279 33.333 0.00 0.00 31.57 2.83
66 67 8.097038 AGTCTGCTTGTAATTTAGAGATGACAA 58.903 33.333 0.00 0.00 31.21 3.18
67 68 7.615403 AGTCTGCTTGTAATTTAGAGATGACA 58.385 34.615 0.00 0.00 0.00 3.58
68 69 8.485976 AAGTCTGCTTGTAATTTAGAGATGAC 57.514 34.615 0.00 0.00 32.92 3.06
69 70 8.314021 TGAAGTCTGCTTGTAATTTAGAGATGA 58.686 33.333 0.00 0.00 34.61 2.92
70 71 8.484641 TGAAGTCTGCTTGTAATTTAGAGATG 57.515 34.615 0.00 0.00 34.61 2.90
71 72 9.678260 ATTGAAGTCTGCTTGTAATTTAGAGAT 57.322 29.630 0.00 0.00 34.61 2.75
77 78 9.289782 AGTCTTATTGAAGTCTGCTTGTAATTT 57.710 29.630 0.00 0.00 34.61 1.82
78 79 8.854614 AGTCTTATTGAAGTCTGCTTGTAATT 57.145 30.769 0.00 0.00 34.61 1.40
79 80 9.372369 GTAGTCTTATTGAAGTCTGCTTGTAAT 57.628 33.333 0.00 0.00 33.09 1.89
80 81 7.817962 GGTAGTCTTATTGAAGTCTGCTTGTAA 59.182 37.037 0.00 0.00 35.10 2.41
81 82 7.178628 AGGTAGTCTTATTGAAGTCTGCTTGTA 59.821 37.037 0.00 0.00 35.10 2.41
82 83 6.014156 AGGTAGTCTTATTGAAGTCTGCTTGT 60.014 38.462 0.00 0.00 35.10 3.16
83 84 6.402222 AGGTAGTCTTATTGAAGTCTGCTTG 58.598 40.000 0.00 0.00 35.10 4.01
84 85 6.613153 AGGTAGTCTTATTGAAGTCTGCTT 57.387 37.500 0.00 0.00 35.10 3.91
85 86 6.613153 AAGGTAGTCTTATTGAAGTCTGCT 57.387 37.500 0.00 0.00 35.10 4.24
86 87 8.198109 TGATAAGGTAGTCTTATTGAAGTCTGC 58.802 37.037 0.00 0.00 45.78 4.26
89 90 9.315525 GGTTGATAAGGTAGTCTTATTGAAGTC 57.684 37.037 0.00 0.00 45.78 3.01
90 91 8.822805 TGGTTGATAAGGTAGTCTTATTGAAGT 58.177 33.333 0.00 0.00 45.78 3.01
91 92 9.838339 ATGGTTGATAAGGTAGTCTTATTGAAG 57.162 33.333 0.00 0.00 45.78 3.02
93 94 9.613428 CAATGGTTGATAAGGTAGTCTTATTGA 57.387 33.333 0.00 0.00 45.78 2.57
94 95 9.396022 ACAATGGTTGATAAGGTAGTCTTATTG 57.604 33.333 0.00 0.00 45.78 1.90
98 99 7.499232 GCATACAATGGTTGATAAGGTAGTCTT 59.501 37.037 0.00 0.00 39.40 3.01
99 100 6.992715 GCATACAATGGTTGATAAGGTAGTCT 59.007 38.462 0.00 0.00 0.00 3.24
100 101 6.073765 CGCATACAATGGTTGATAAGGTAGTC 60.074 42.308 0.00 0.00 0.00 2.59
101 102 5.758296 CGCATACAATGGTTGATAAGGTAGT 59.242 40.000 0.00 0.00 0.00 2.73
102 103 5.334105 GCGCATACAATGGTTGATAAGGTAG 60.334 44.000 0.30 0.00 0.00 3.18
103 104 4.513692 GCGCATACAATGGTTGATAAGGTA 59.486 41.667 0.30 0.00 0.00 3.08
104 105 3.315191 GCGCATACAATGGTTGATAAGGT 59.685 43.478 0.30 0.00 0.00 3.50
105 106 3.565482 AGCGCATACAATGGTTGATAAGG 59.435 43.478 11.47 0.00 0.00 2.69
106 107 4.818534 AGCGCATACAATGGTTGATAAG 57.181 40.909 11.47 0.00 0.00 1.73
107 108 6.685527 TTAAGCGCATACAATGGTTGATAA 57.314 33.333 11.47 0.00 0.00 1.75
108 109 6.685527 TTTAAGCGCATACAATGGTTGATA 57.314 33.333 11.47 0.00 0.00 2.15
109 110 5.574891 TTTAAGCGCATACAATGGTTGAT 57.425 34.783 11.47 0.00 0.00 2.57
110 111 4.674101 GCTTTAAGCGCATACAATGGTTGA 60.674 41.667 11.47 0.00 0.00 3.18
111 112 3.547468 GCTTTAAGCGCATACAATGGTTG 59.453 43.478 11.47 0.00 0.00 3.77
112 113 3.192422 TGCTTTAAGCGCATACAATGGTT 59.808 39.130 11.47 0.00 46.26 3.67
113 114 2.752354 TGCTTTAAGCGCATACAATGGT 59.248 40.909 11.47 0.00 46.26 3.55
114 115 3.419264 TGCTTTAAGCGCATACAATGG 57.581 42.857 11.47 0.00 46.26 3.16
115 116 5.954434 ATTTGCTTTAAGCGCATACAATG 57.046 34.783 11.47 1.18 46.26 2.82
116 117 8.064447 CATTATTTGCTTTAAGCGCATACAAT 57.936 30.769 11.47 4.39 46.26 2.71
117 118 7.448588 CATTATTTGCTTTAAGCGCATACAA 57.551 32.000 11.47 0.00 46.26 2.41
129 130 9.562175 TGGTAACTGCACTGCATTATTTGCTTT 62.562 37.037 3.64 0.00 45.47 3.51
130 131 8.188373 TGGTAACTGCACTGCATTATTTGCTT 62.188 38.462 3.64 0.00 45.47 3.91
131 132 6.784875 TGGTAACTGCACTGCATTATTTGCT 61.785 40.000 3.64 0.00 45.47 3.91
132 133 4.617995 TGGTAACTGCACTGCATTATTTGC 60.618 41.667 3.64 0.12 45.47 3.68
133 134 5.058149 TGGTAACTGCACTGCATTATTTG 57.942 39.130 3.64 0.00 38.13 2.32
134 135 5.449041 CGATGGTAACTGCACTGCATTATTT 60.449 40.000 3.64 0.00 38.13 1.40
135 136 4.035558 CGATGGTAACTGCACTGCATTATT 59.964 41.667 3.64 2.67 38.13 1.40
136 137 3.561310 CGATGGTAACTGCACTGCATTAT 59.439 43.478 3.64 0.00 38.13 1.28
137 138 2.935849 CGATGGTAACTGCACTGCATTA 59.064 45.455 3.64 3.40 38.13 1.90
138 139 1.739466 CGATGGTAACTGCACTGCATT 59.261 47.619 3.64 0.00 38.13 3.56
139 140 1.339055 ACGATGGTAACTGCACTGCAT 60.339 47.619 3.64 0.00 38.13 3.96
140 141 0.034756 ACGATGGTAACTGCACTGCA 59.965 50.000 3.11 3.11 36.92 4.41
141 142 1.135972 CAACGATGGTAACTGCACTGC 60.136 52.381 0.00 0.00 37.61 4.40
142 143 2.096268 CACAACGATGGTAACTGCACTG 60.096 50.000 0.00 0.00 37.61 3.66
143 144 2.143122 CACAACGATGGTAACTGCACT 58.857 47.619 0.00 0.00 37.61 4.40
144 145 1.871039 ACACAACGATGGTAACTGCAC 59.129 47.619 0.00 0.00 37.61 4.57
145 146 2.248280 ACACAACGATGGTAACTGCA 57.752 45.000 0.00 0.00 37.61 4.41
146 147 2.289547 ACAACACAACGATGGTAACTGC 59.710 45.455 0.00 0.00 37.61 4.40
147 148 3.311322 ACACAACACAACGATGGTAACTG 59.689 43.478 0.00 0.00 37.61 3.16
148 149 3.537580 ACACAACACAACGATGGTAACT 58.462 40.909 0.00 0.00 37.61 2.24
149 150 3.310227 TGACACAACACAACGATGGTAAC 59.690 43.478 0.00 0.00 0.00 2.50
150 151 3.532542 TGACACAACACAACGATGGTAA 58.467 40.909 0.00 0.00 0.00 2.85
151 152 3.127589 CTGACACAACACAACGATGGTA 58.872 45.455 0.00 0.00 0.00 3.25
152 153 1.939934 CTGACACAACACAACGATGGT 59.060 47.619 0.00 0.00 0.00 3.55
153 154 1.334059 GCTGACACAACACAACGATGG 60.334 52.381 0.00 0.00 0.00 3.51
154 155 1.330213 TGCTGACACAACACAACGATG 59.670 47.619 0.00 0.00 0.00 3.84
155 156 1.662517 TGCTGACACAACACAACGAT 58.337 45.000 0.00 0.00 0.00 3.73
156 157 1.443802 TTGCTGACACAACACAACGA 58.556 45.000 0.00 0.00 0.00 3.85
157 158 2.254918 TTTGCTGACACAACACAACG 57.745 45.000 0.00 0.00 0.00 4.10
185 186 4.426313 CCAGAAGGCCCGGAACCC 62.426 72.222 0.73 0.00 0.00 4.11
201 202 2.997897 ATCTCTATCGGCCGGGCC 60.998 66.667 28.61 28.61 46.75 5.80
202 203 2.262915 CATCTCTATCGGCCGGGC 59.737 66.667 27.83 20.04 0.00 6.13
203 204 2.262915 GCATCTCTATCGGCCGGG 59.737 66.667 27.83 15.95 0.00 5.73
204 205 2.262915 GGCATCTCTATCGGCCGG 59.737 66.667 27.83 9.82 36.58 6.13
206 207 0.037790 GACTGGCATCTCTATCGGCC 60.038 60.000 0.00 0.00 46.58 6.13
207 208 0.387878 CGACTGGCATCTCTATCGGC 60.388 60.000 0.00 0.00 0.00 5.54
208 209 0.387878 GCGACTGGCATCTCTATCGG 60.388 60.000 0.00 0.00 42.87 4.18
209 210 0.387878 GGCGACTGGCATCTCTATCG 60.388 60.000 0.00 0.00 46.16 2.92
210 211 0.037790 GGGCGACTGGCATCTCTATC 60.038 60.000 0.00 0.00 46.16 2.08
211 212 1.476007 GGGGCGACTGGCATCTCTAT 61.476 60.000 0.00 0.00 46.16 1.98
212 213 2.134287 GGGGCGACTGGCATCTCTA 61.134 63.158 0.00 0.00 46.16 2.43
213 214 3.474570 GGGGCGACTGGCATCTCT 61.475 66.667 0.00 0.00 46.16 3.10
214 215 3.746949 CTGGGGCGACTGGCATCTC 62.747 68.421 0.00 0.00 46.16 2.75
215 216 3.790437 CTGGGGCGACTGGCATCT 61.790 66.667 0.00 0.00 46.16 2.90
216 217 4.864334 CCTGGGGCGACTGGCATC 62.864 72.222 0.00 0.00 46.16 3.91
227 228 0.748005 CATGTTCGGTTAGCCTGGGG 60.748 60.000 0.00 0.00 0.00 4.96
228 229 0.748005 CCATGTTCGGTTAGCCTGGG 60.748 60.000 0.00 0.00 0.00 4.45
229 230 1.376609 GCCATGTTCGGTTAGCCTGG 61.377 60.000 0.00 0.00 0.00 4.45
230 231 1.705337 CGCCATGTTCGGTTAGCCTG 61.705 60.000 0.00 0.00 0.00 4.85
231 232 1.449601 CGCCATGTTCGGTTAGCCT 60.450 57.895 0.00 0.00 0.00 4.58
232 233 3.098555 CGCCATGTTCGGTTAGCC 58.901 61.111 0.00 0.00 0.00 3.93
233 234 2.403586 GCGCCATGTTCGGTTAGC 59.596 61.111 0.00 0.00 0.00 3.09
234 235 0.802994 TACGCGCCATGTTCGGTTAG 60.803 55.000 5.73 0.00 0.00 2.34
235 236 0.802994 CTACGCGCCATGTTCGGTTA 60.803 55.000 5.73 0.00 0.00 2.85
236 237 2.048033 TACGCGCCATGTTCGGTT 60.048 55.556 5.73 0.00 0.00 4.44
237 238 2.508439 CTACGCGCCATGTTCGGT 60.508 61.111 5.73 0.00 0.00 4.69
238 239 3.261951 CCTACGCGCCATGTTCGG 61.262 66.667 5.73 0.00 0.00 4.30
239 240 2.508439 ACCTACGCGCCATGTTCG 60.508 61.111 5.73 0.00 0.00 3.95
240 241 3.089784 CACCTACGCGCCATGTTC 58.910 61.111 5.73 0.00 0.00 3.18
241 242 3.124921 GCACCTACGCGCCATGTT 61.125 61.111 5.73 0.00 0.00 2.71
247 248 3.761445 TACGATGGCACCTACGCGC 62.761 63.158 5.73 0.00 0.00 6.86
248 249 1.942712 GTACGATGGCACCTACGCG 60.943 63.158 3.53 3.53 0.00 6.01
249 250 1.942712 CGTACGATGGCACCTACGC 60.943 63.158 10.44 0.00 0.00 4.42
250 251 1.298863 CCGTACGATGGCACCTACG 60.299 63.158 18.76 11.52 33.36 3.51
251 252 0.174162 AACCGTACGATGGCACCTAC 59.826 55.000 18.76 0.00 0.00 3.18
252 253 0.173935 CAACCGTACGATGGCACCTA 59.826 55.000 18.76 0.00 0.00 3.08
253 254 1.079405 CAACCGTACGATGGCACCT 60.079 57.895 18.76 0.00 0.00 4.00
254 255 1.356527 GACAACCGTACGATGGCACC 61.357 60.000 18.76 3.60 0.00 5.01
255 256 0.389426 AGACAACCGTACGATGGCAC 60.389 55.000 23.11 14.24 0.00 5.01
256 257 0.108992 GAGACAACCGTACGATGGCA 60.109 55.000 23.11 0.00 0.00 4.92
257 258 0.108992 TGAGACAACCGTACGATGGC 60.109 55.000 18.76 17.28 0.00 4.40
258 259 2.193447 CATGAGACAACCGTACGATGG 58.807 52.381 18.76 0.00 0.00 3.51
259 260 2.852413 GACATGAGACAACCGTACGATG 59.148 50.000 18.76 17.25 0.00 3.84
260 261 2.490509 TGACATGAGACAACCGTACGAT 59.509 45.455 18.76 0.00 0.00 3.73
261 262 1.881324 TGACATGAGACAACCGTACGA 59.119 47.619 18.76 0.00 0.00 3.43
262 263 1.983605 GTGACATGAGACAACCGTACG 59.016 52.381 8.69 8.69 0.00 3.67
263 264 3.021269 TGTGACATGAGACAACCGTAC 57.979 47.619 0.00 0.00 0.00 3.67
264 265 3.672241 CGATGTGACATGAGACAACCGTA 60.672 47.826 1.23 0.00 0.00 4.02
265 266 2.688507 GATGTGACATGAGACAACCGT 58.311 47.619 1.23 0.00 0.00 4.83
266 267 1.655597 CGATGTGACATGAGACAACCG 59.344 52.381 1.23 6.23 0.00 4.44
267 268 2.413112 CACGATGTGACATGAGACAACC 59.587 50.000 1.23 0.00 35.23 3.77
268 269 3.059884 ACACGATGTGACATGAGACAAC 58.940 45.455 1.23 0.00 36.96 3.32
269 270 3.385193 ACACGATGTGACATGAGACAA 57.615 42.857 1.23 0.00 36.96 3.18
270 271 4.513198 TTACACGATGTGACATGAGACA 57.487 40.909 1.23 1.41 36.96 3.41
271 272 6.752351 ACTAATTACACGATGTGACATGAGAC 59.248 38.462 1.23 0.00 36.96 3.36
272 273 6.863275 ACTAATTACACGATGTGACATGAGA 58.137 36.000 1.23 0.00 36.96 3.27
273 274 6.199154 GGACTAATTACACGATGTGACATGAG 59.801 42.308 1.23 0.00 36.96 2.90
274 275 6.040247 GGACTAATTACACGATGTGACATGA 58.960 40.000 1.23 0.00 36.96 3.07
275 276 6.019559 CAGGACTAATTACACGATGTGACATG 60.020 42.308 1.23 0.00 36.96 3.21
276 277 6.042777 CAGGACTAATTACACGATGTGACAT 58.957 40.000 0.00 0.00 36.96 3.06
277 278 5.184287 TCAGGACTAATTACACGATGTGACA 59.816 40.000 3.61 0.00 36.96 3.58
278 279 5.647589 TCAGGACTAATTACACGATGTGAC 58.352 41.667 3.61 0.00 36.96 3.67
279 280 5.907866 TCAGGACTAATTACACGATGTGA 57.092 39.130 3.61 0.00 36.96 3.58
280 281 5.004440 CGTTCAGGACTAATTACACGATGTG 59.996 44.000 0.00 0.00 39.75 3.21
281 282 5.100259 CGTTCAGGACTAATTACACGATGT 58.900 41.667 0.00 0.00 0.00 3.06
282 283 5.100259 ACGTTCAGGACTAATTACACGATG 58.900 41.667 0.00 0.00 0.00 3.84
283 284 5.125097 AGACGTTCAGGACTAATTACACGAT 59.875 40.000 0.00 0.00 0.00 3.73
284 285 4.456911 AGACGTTCAGGACTAATTACACGA 59.543 41.667 0.00 0.00 0.00 4.35
285 286 4.730657 AGACGTTCAGGACTAATTACACG 58.269 43.478 0.00 0.00 0.00 4.49
286 287 5.952033 AGAGACGTTCAGGACTAATTACAC 58.048 41.667 0.00 0.00 0.00 2.90
287 288 6.585695 AAGAGACGTTCAGGACTAATTACA 57.414 37.500 0.00 0.00 0.00 2.41
288 289 8.976986 TTTAAGAGACGTTCAGGACTAATTAC 57.023 34.615 0.00 0.00 0.00 1.89
289 290 9.985730 TTTTTAAGAGACGTTCAGGACTAATTA 57.014 29.630 0.00 0.00 0.00 1.40
290 291 8.897872 TTTTTAAGAGACGTTCAGGACTAATT 57.102 30.769 0.00 0.00 0.00 1.40
323 324 0.037975 TTCGGCGTTCAGGAGTAACC 60.038 55.000 6.85 0.00 39.35 2.85
324 325 1.659098 CATTCGGCGTTCAGGAGTAAC 59.341 52.381 6.85 0.00 0.00 2.50
325 326 1.274167 ACATTCGGCGTTCAGGAGTAA 59.726 47.619 6.85 0.00 0.00 2.24
326 327 0.892755 ACATTCGGCGTTCAGGAGTA 59.107 50.000 6.85 0.00 0.00 2.59
327 328 0.034896 AACATTCGGCGTTCAGGAGT 59.965 50.000 6.85 0.00 0.00 3.85
328 329 1.128692 GAAACATTCGGCGTTCAGGAG 59.871 52.381 6.85 0.00 0.00 3.69
329 330 1.153353 GAAACATTCGGCGTTCAGGA 58.847 50.000 6.85 0.00 0.00 3.86
330 331 0.168128 GGAAACATTCGGCGTTCAGG 59.832 55.000 6.85 0.00 0.00 3.86
331 332 0.871722 TGGAAACATTCGGCGTTCAG 59.128 50.000 6.85 0.00 33.40 3.02
332 333 3.008141 TGGAAACATTCGGCGTTCA 57.992 47.368 6.85 0.00 33.40 3.18
344 345 4.035017 CGCACGATTTATCCAATGGAAAC 58.965 43.478 5.89 0.00 34.34 2.78
345 346 3.692101 ACGCACGATTTATCCAATGGAAA 59.308 39.130 5.89 0.00 34.34 3.13
346 347 3.275143 ACGCACGATTTATCCAATGGAA 58.725 40.909 5.89 0.00 34.34 3.53
347 348 2.912771 ACGCACGATTTATCCAATGGA 58.087 42.857 3.67 3.67 35.55 3.41
348 349 4.128554 GTACGCACGATTTATCCAATGG 57.871 45.455 0.00 0.00 0.00 3.16
362 363 1.058590 CGACAGTGAGACGTACGCAC 61.059 60.000 16.72 15.28 46.78 5.34
363 364 1.205820 CGACAGTGAGACGTACGCA 59.794 57.895 16.72 2.07 0.00 5.24
364 365 0.518764 CTCGACAGTGAGACGTACGC 60.519 60.000 16.72 8.42 38.28 4.42
365 366 0.518764 GCTCGACAGTGAGACGTACG 60.519 60.000 15.01 15.01 38.28 3.67
366 367 0.179194 GGCTCGACAGTGAGACGTAC 60.179 60.000 0.00 0.00 38.28 3.67
367 368 2.168947 GGCTCGACAGTGAGACGTA 58.831 57.895 0.00 0.00 38.28 3.57
368 369 2.955402 GGCTCGACAGTGAGACGT 59.045 61.111 0.00 0.00 38.28 4.34
370 371 1.214062 CCTGGCTCGACAGTGAGAC 59.786 63.158 0.00 2.47 44.71 3.36
371 372 2.640302 GCCTGGCTCGACAGTGAGA 61.640 63.158 12.43 0.00 38.28 3.27
372 373 2.125753 GCCTGGCTCGACAGTGAG 60.126 66.667 12.43 0.00 36.75 3.51
373 374 3.695606 GGCCTGGCTCGACAGTGA 61.696 66.667 19.68 0.00 36.75 3.41
374 375 3.947132 CTGGCCTGGCTCGACAGTG 62.947 68.421 19.68 0.00 36.75 3.66
375 376 3.699894 CTGGCCTGGCTCGACAGT 61.700 66.667 19.68 0.00 36.75 3.55
376 377 3.385384 TCTGGCCTGGCTCGACAG 61.385 66.667 19.68 16.55 38.21 3.51
377 378 3.695606 GTCTGGCCTGGCTCGACA 61.696 66.667 25.20 13.46 31.82 4.35
378 379 4.459089 GGTCTGGCCTGGCTCGAC 62.459 72.222 23.38 23.38 0.00 4.20
381 382 2.134287 TATCGGTCTGGCCTGGCTC 61.134 63.158 19.68 9.39 34.25 4.70
382 383 2.041922 TATCGGTCTGGCCTGGCT 60.042 61.111 19.68 0.00 34.25 4.75
383 384 2.109181 GTATCGGTCTGGCCTGGC 59.891 66.667 11.05 11.05 34.25 4.85
384 385 1.742768 GAGTATCGGTCTGGCCTGG 59.257 63.158 10.07 0.00 34.25 4.45
385 386 0.757188 AGGAGTATCGGTCTGGCCTG 60.757 60.000 3.32 2.92 34.37 4.85
386 387 0.032017 AAGGAGTATCGGTCTGGCCT 60.032 55.000 3.32 0.00 34.37 5.19
387 388 0.105039 CAAGGAGTATCGGTCTGGCC 59.895 60.000 0.00 0.00 34.37 5.36
388 389 0.105039 CCAAGGAGTATCGGTCTGGC 59.895 60.000 0.00 0.00 34.37 4.85
389 390 0.753262 CCCAAGGAGTATCGGTCTGG 59.247 60.000 0.00 0.00 34.37 3.86
390 391 0.105039 GCCCAAGGAGTATCGGTCTG 59.895 60.000 0.00 0.00 34.37 3.51
391 392 1.392710 CGCCCAAGGAGTATCGGTCT 61.393 60.000 0.00 0.00 34.37 3.85
392 393 1.067582 CGCCCAAGGAGTATCGGTC 59.932 63.158 0.00 0.00 34.37 4.79
393 394 1.684734 ACGCCCAAGGAGTATCGGT 60.685 57.895 0.00 0.00 33.08 4.69
394 395 1.227263 CACGCCCAAGGAGTATCGG 60.227 63.158 0.00 0.00 33.08 4.18
395 396 0.108329 AACACGCCCAAGGAGTATCG 60.108 55.000 0.00 0.00 33.08 2.92
396 397 1.737793 CAAACACGCCCAAGGAGTATC 59.262 52.381 0.00 0.00 33.08 2.24
397 398 1.613255 CCAAACACGCCCAAGGAGTAT 60.613 52.381 0.00 0.00 33.08 2.12
398 399 0.250553 CCAAACACGCCCAAGGAGTA 60.251 55.000 0.00 0.00 33.08 2.59
399 400 1.528309 CCAAACACGCCCAAGGAGT 60.528 57.895 0.00 0.00 35.79 3.85
400 401 1.106944 AACCAAACACGCCCAAGGAG 61.107 55.000 0.00 0.00 0.00 3.69
401 402 1.076632 AACCAAACACGCCCAAGGA 60.077 52.632 0.00 0.00 0.00 3.36
402 403 1.067250 CAACCAAACACGCCCAAGG 59.933 57.895 0.00 0.00 0.00 3.61
403 404 1.591327 GCAACCAAACACGCCCAAG 60.591 57.895 0.00 0.00 0.00 3.61
404 405 2.496817 GCAACCAAACACGCCCAA 59.503 55.556 0.00 0.00 0.00 4.12
447 448 1.305381 CAGACCTCTCCCTTCCCGT 60.305 63.158 0.00 0.00 0.00 5.28
462 463 4.953579 AGGAAAACCAAGCAACTAAACAGA 59.046 37.500 0.00 0.00 0.00 3.41
469 470 3.578282 CCCAATAGGAAAACCAAGCAACT 59.422 43.478 0.00 0.00 38.24 3.16
475 476 4.618378 ATAGGCCCAATAGGAAAACCAA 57.382 40.909 0.00 0.00 38.24 3.67
486 487 1.699634 AGCGTGTGATATAGGCCCAAT 59.300 47.619 0.00 0.00 0.00 3.16
533 534 1.354368 ACCGATCCAACCATTTCCTGT 59.646 47.619 0.00 0.00 0.00 4.00
541 542 2.094390 CGAGAAACTACCGATCCAACCA 60.094 50.000 0.00 0.00 0.00 3.67
543 544 1.925185 GCGAGAAACTACCGATCCAAC 59.075 52.381 0.00 0.00 0.00 3.77
545 546 1.179152 TGCGAGAAACTACCGATCCA 58.821 50.000 0.00 0.00 0.00 3.41
553 554 0.973632 TCCTGGCTTGCGAGAAACTA 59.026 50.000 4.70 0.00 0.00 2.24
572 573 0.740868 CGACCTCGTGCCACAATCAT 60.741 55.000 0.00 0.00 34.11 2.45
576 577 4.228567 TGCGACCTCGTGCCACAA 62.229 61.111 0.00 0.00 42.22 3.33
651 654 1.145738 AGGCTAATTTGGCATCGGGAT 59.854 47.619 15.27 0.00 34.73 3.85
658 661 0.324275 GGGGTGAGGCTAATTTGGCA 60.324 55.000 15.27 0.00 34.73 4.92
678 684 3.055819 GCTATGGGTGAGTGAGTGAAAGA 60.056 47.826 0.00 0.00 0.00 2.52
708 715 3.957288 GCAGTAGGCAAGAAAGGGA 57.043 52.632 0.00 0.00 43.97 4.20
718 725 1.078848 CAGTGGTGAGGCAGTAGGC 60.079 63.158 0.00 0.00 43.74 3.93
759 766 2.729862 GTAGCCGCCGATAGCACG 60.730 66.667 0.00 0.00 44.04 5.34
774 783 2.125673 GCCTCTTTCGCTGCCGTA 60.126 61.111 0.00 0.00 35.54 4.02
780 789 2.048127 GTCACCGCCTCTTTCGCT 60.048 61.111 0.00 0.00 0.00 4.93
784 793 1.782028 GCAAACGTCACCGCCTCTTT 61.782 55.000 0.00 0.00 37.70 2.52
794 812 1.005037 AGATCCGCTGCAAACGTCA 60.005 52.632 7.88 0.00 0.00 4.35
796 814 2.034879 CCAGATCCGCTGCAAACGT 61.035 57.895 7.88 0.00 43.50 3.99
856 874 1.070604 CATAGGGGGAGCCATGTCAT 58.929 55.000 0.00 0.00 0.00 3.06
859 877 0.552848 CAACATAGGGGGAGCCATGT 59.447 55.000 0.00 0.00 33.12 3.21
874 893 1.134699 GCATCGGAGATGAGGACAACA 60.135 52.381 13.56 0.00 45.12 3.33
876 895 0.465705 GGCATCGGAGATGAGGACAA 59.534 55.000 13.56 0.00 45.12 3.18
933 953 2.370189 CACCTAGCTTAATGGCCTAGCT 59.630 50.000 20.46 20.46 46.33 3.32
1005 1025 0.829990 TTATCAGCCTCATCCGTGCA 59.170 50.000 0.00 0.00 0.00 4.57
1115 1135 3.290710 CAGGGAAACAATGGACCATAGG 58.709 50.000 7.59 5.96 0.00 2.57
1135 1155 0.417437 TGGATCCTCTCCTGTTCCCA 59.583 55.000 14.23 0.00 45.21 4.37
1185 1205 1.893062 CATCCACAGAGCCTCGACA 59.107 57.895 0.00 0.00 0.00 4.35
1213 1233 1.273327 CCTGGCAAATGGTGGTCTTTC 59.727 52.381 0.00 0.00 0.00 2.62
1219 1239 1.294138 CAAGCCTGGCAAATGGTGG 59.706 57.895 22.65 0.00 0.00 4.61
1359 1379 4.042884 TGGTCTCCATTGATCTCCTGAAT 58.957 43.478 0.00 0.00 0.00 2.57
1411 1431 1.203313 TCCTCTAAGCTCCCCAACAGT 60.203 52.381 0.00 0.00 0.00 3.55
1512 1532 9.407380 AGCCATGAAAAGTGTATATTGTCAATA 57.593 29.630 7.72 7.72 0.00 1.90
1590 1612 1.202927 CCCCAATGCAATCGTAGGGAT 60.203 52.381 9.27 0.00 38.60 3.85
1592 1614 1.455383 GCCCCAATGCAATCGTAGGG 61.455 60.000 0.00 0.00 36.08 3.53
1593 1615 0.751277 TGCCCCAATGCAATCGTAGG 60.751 55.000 0.00 0.00 38.56 3.18
1595 1617 3.272925 TTGCCCCAATGCAATCGTA 57.727 47.368 0.00 0.00 45.77 3.43
1596 1618 4.110319 TTGCCCCAATGCAATCGT 57.890 50.000 0.00 0.00 45.77 3.73
1652 1674 1.123077 CCCCTGTATGCTGCAGACTA 58.877 55.000 25.50 12.70 36.12 2.59
1674 1696 2.143122 TCTGGCTTTTGTAGTGCTTCG 58.857 47.619 0.00 0.00 0.00 3.79
1749 1774 3.790437 CATGCGCTGACCCCTCCT 61.790 66.667 9.73 0.00 0.00 3.69
1797 1823 3.784763 AGAGATGTTGATCCCATCAGGTT 59.215 43.478 19.11 4.31 40.93 3.50
1817 1843 1.629043 AGGTAGAACTTGCCGTCAGA 58.371 50.000 0.00 0.00 0.00 3.27
1845 1871 0.887836 CAGCCGACATGCATAGCCAT 60.888 55.000 0.00 0.00 0.00 4.40
1879 1905 6.017109 TGAGATGCTACCTTGTTTTCTTGAAC 60.017 38.462 0.00 0.00 0.00 3.18
1884 1910 4.452455 CGTTGAGATGCTACCTTGTTTTCT 59.548 41.667 0.00 0.00 0.00 2.52
1897 1923 2.290641 ACCACAAAACTCGTTGAGATGC 59.709 45.455 0.00 0.00 33.32 3.91
1959 1985 4.021016 CAGTTACTCTAAGGCTGGAGTGTT 60.021 45.833 24.39 12.44 42.83 3.32
2013 2039 6.721208 TGGCTTCTGATCCAAGATTTTAAACT 59.279 34.615 5.83 0.00 0.00 2.66
2020 2046 4.213513 GGAATGGCTTCTGATCCAAGATT 58.786 43.478 5.83 0.00 35.75 2.40
2024 2050 2.621407 GGTGGAATGGCTTCTGATCCAA 60.621 50.000 3.73 0.00 41.54 3.53
2231 2258 1.828595 TCTGTTAAGCCACATCGCCTA 59.171 47.619 0.00 0.00 0.00 3.93
2287 2353 3.427638 CGTACTGCTGCTGCTACTTCTTA 60.428 47.826 17.00 0.00 40.48 2.10
2294 2360 1.133216 CTTCTCGTACTGCTGCTGCTA 59.867 52.381 17.00 0.00 40.48 3.49
2309 2381 3.591196 TCTCTTCTTCTGCTGCTTCTC 57.409 47.619 0.00 0.00 0.00 2.87
2318 2390 6.406177 CCAGATCTTCCTCTTCTCTTCTTCTG 60.406 46.154 0.00 0.00 0.00 3.02
2423 2516 5.569413 CGCCATCTACTTAAACAAATGACC 58.431 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.