Multiple sequence alignment - TraesCS6B01G404400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G404400 chr6B 100.000 2496 0 0 1 2496 679984479 679981984 0.000000e+00 4610.0
1 TraesCS6B01G404400 chr1A 90.560 964 64 15 753 1700 490759759 490760711 0.000000e+00 1251.0
2 TraesCS6B01G404400 chr1A 84.732 1251 112 45 561 1777 62794982 62793777 0.000000e+00 1179.0
3 TraesCS6B01G404400 chr1A 85.633 1058 79 30 754 1777 490418030 490419048 0.000000e+00 1044.0
4 TraesCS6B01G404400 chr1A 92.021 564 37 7 826 1386 487568493 487569051 0.000000e+00 785.0
5 TraesCS6B01G404400 chr1A 84.973 752 80 26 775 1510 487604270 487605004 0.000000e+00 732.0
6 TraesCS6B01G404400 chr1A 84.348 575 74 10 111 679 490417021 490417585 1.310000e-152 549.0
7 TraesCS6B01G404400 chr1A 84.629 566 70 9 119 676 490759137 490759693 4.690000e-152 547.0
8 TraesCS6B01G404400 chr1A 86.822 387 30 9 1795 2178 62793707 62793339 1.790000e-111 412.0
9 TraesCS6B01G404400 chr1A 89.259 270 21 5 1910 2178 490778341 490778603 5.150000e-87 331.0
10 TraesCS6B01G404400 chr1A 93.717 191 10 2 2191 2380 490779045 490779234 4.060000e-73 285.0
11 TraesCS6B01G404400 chr1A 87.200 125 4 6 1795 1918 490419122 490419235 5.600000e-27 132.0
12 TraesCS6B01G404400 chr1A 100.000 61 0 0 1795 1855 490777995 490778055 2.030000e-21 113.0
13 TraesCS6B01G404400 chr1A 72.889 225 47 10 127 341 573318081 573317861 5.760000e-07 65.8
14 TraesCS6B01G404400 chr1D 88.739 1039 80 20 753 1777 63682378 63681363 0.000000e+00 1236.0
15 TraesCS6B01G404400 chr1D 86.132 786 80 26 780 1553 388603357 388604125 0.000000e+00 821.0
16 TraesCS6B01G404400 chr1D 89.916 357 22 5 1406 1751 394490838 394490485 4.900000e-122 448.0
17 TraesCS6B01G404400 chr1D 90.939 309 25 2 2190 2496 63681152 63680845 1.790000e-111 412.0
18 TraesCS6B01G404400 chr1D 87.869 305 29 4 2190 2494 394489351 394489055 3.950000e-93 351.0
19 TraesCS6B01G404400 chr1D 86.957 161 4 4 1795 1947 394490368 394490217 5.520000e-37 165.0
20 TraesCS6B01G404400 chr1D 88.372 86 7 2 561 643 394492184 394492099 1.580000e-17 100.0
21 TraesCS6B01G404400 chr1D 91.803 61 5 0 2118 2178 394490179 394490119 4.420000e-13 86.1
22 TraesCS6B01G404400 chr1D 100.000 29 0 0 313 341 477202891 477202863 1.000000e-03 54.7
23 TraesCS6B01G404400 chr1B 87.771 1014 79 20 778 1777 104481766 104480784 0.000000e+00 1144.0
24 TraesCS6B01G404400 chr1B 83.673 1225 93 50 753 1928 527288004 527289170 0.000000e+00 1055.0
25 TraesCS6B01G404400 chr1B 85.271 774 85 22 788 1553 608335897 608335145 0.000000e+00 771.0
26 TraesCS6B01G404400 chr1B 81.976 921 114 36 849 1740 521860788 521861685 0.000000e+00 734.0
27 TraesCS6B01G404400 chr1B 89.320 309 26 6 2193 2496 527290615 527290921 5.040000e-102 381.0
28 TraesCS6B01G404400 chr1B 85.271 387 27 12 1795 2178 104480711 104480352 3.030000e-99 372.0
29 TraesCS6B01G404400 chr1B 88.889 252 20 6 1926 2175 527289882 527290127 1.120000e-78 303.0
30 TraesCS6B01G404400 chr1B 100.000 28 0 0 313 340 402002489 402002516 4.000000e-03 52.8
31 TraesCS6B01G404400 chr3D 79.470 151 19 6 199 341 614918416 614918270 2.040000e-16 97.1
32 TraesCS6B01G404400 chr3B 74.554 224 35 14 136 341 825610730 825610511 7.400000e-11 78.7
33 TraesCS6B01G404400 chr6A 100.000 28 0 0 313 340 598928557 598928584 4.000000e-03 52.8
34 TraesCS6B01G404400 chr2D 100.000 28 0 0 313 340 495070782 495070809 4.000000e-03 52.8
35 TraesCS6B01G404400 chr2B 100.000 28 0 0 313 340 793980013 793980040 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G404400 chr6B 679981984 679984479 2495 True 4610.000000 4610 100.000000 1 2496 1 chr6B.!!$R1 2495
1 TraesCS6B01G404400 chr1A 490759137 490760711 1574 False 899.000000 1251 87.594500 119 1700 2 chr1A.!!$F4 1581
2 TraesCS6B01G404400 chr1A 62793339 62794982 1643 True 795.500000 1179 85.777000 561 2178 2 chr1A.!!$R2 1617
3 TraesCS6B01G404400 chr1A 487568493 487569051 558 False 785.000000 785 92.021000 826 1386 1 chr1A.!!$F1 560
4 TraesCS6B01G404400 chr1A 487604270 487605004 734 False 732.000000 732 84.973000 775 1510 1 chr1A.!!$F2 735
5 TraesCS6B01G404400 chr1A 490417021 490419235 2214 False 575.000000 1044 85.727000 111 1918 3 chr1A.!!$F3 1807
6 TraesCS6B01G404400 chr1A 490777995 490779234 1239 False 243.000000 331 94.325333 1795 2380 3 chr1A.!!$F5 585
7 TraesCS6B01G404400 chr1D 63680845 63682378 1533 True 824.000000 1236 89.839000 753 2496 2 chr1D.!!$R2 1743
8 TraesCS6B01G404400 chr1D 388603357 388604125 768 False 821.000000 821 86.132000 780 1553 1 chr1D.!!$F1 773
9 TraesCS6B01G404400 chr1D 394489055 394492184 3129 True 230.020000 448 88.983400 561 2494 5 chr1D.!!$R3 1933
10 TraesCS6B01G404400 chr1B 608335145 608335897 752 True 771.000000 771 85.271000 788 1553 1 chr1B.!!$R1 765
11 TraesCS6B01G404400 chr1B 104480352 104481766 1414 True 758.000000 1144 86.521000 778 2178 2 chr1B.!!$R2 1400
12 TraesCS6B01G404400 chr1B 521860788 521861685 897 False 734.000000 734 81.976000 849 1740 1 chr1B.!!$F2 891
13 TraesCS6B01G404400 chr1B 527288004 527290921 2917 False 579.666667 1055 87.294000 753 2496 3 chr1B.!!$F3 1743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 180 0.035598 TTTTCGGGGCTCACATTCGA 59.964 50.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 2702 0.739462 CGGCAAGCAAGTACGATCCA 60.739 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.355816 TGGTTGACACACTGACGAC 57.644 52.632 0.00 0.00 0.00 4.34
21 22 0.533032 TGGTTGACACACTGACGACA 59.467 50.000 0.00 0.00 29.87 4.35
22 23 1.138069 TGGTTGACACACTGACGACAT 59.862 47.619 0.00 0.00 29.87 3.06
23 24 1.526887 GGTTGACACACTGACGACATG 59.473 52.381 0.00 0.00 29.87 3.21
24 25 2.469826 GTTGACACACTGACGACATGA 58.530 47.619 0.00 0.00 0.00 3.07
25 26 3.059884 GTTGACACACTGACGACATGAT 58.940 45.455 0.00 0.00 0.00 2.45
26 27 2.946564 TGACACACTGACGACATGATC 58.053 47.619 0.00 0.00 0.00 2.92
27 28 2.295909 TGACACACTGACGACATGATCA 59.704 45.455 0.00 0.00 0.00 2.92
28 29 2.663602 GACACACTGACGACATGATCAC 59.336 50.000 0.00 0.00 0.00 3.06
29 30 1.650645 CACACTGACGACATGATCACG 59.349 52.381 0.00 0.00 0.00 4.35
30 31 1.539827 ACACTGACGACATGATCACGA 59.460 47.619 10.77 0.00 0.00 4.35
31 32 2.180397 CACTGACGACATGATCACGAG 58.820 52.381 10.77 1.07 0.00 4.18
32 33 1.813178 ACTGACGACATGATCACGAGT 59.187 47.619 10.77 4.28 0.00 4.18
33 34 2.159503 ACTGACGACATGATCACGAGTC 60.160 50.000 10.77 11.80 0.00 3.36
34 35 2.084546 TGACGACATGATCACGAGTCT 58.915 47.619 17.54 8.85 0.00 3.24
35 36 2.159517 TGACGACATGATCACGAGTCTG 60.160 50.000 17.54 14.25 0.00 3.51
36 37 1.813178 ACGACATGATCACGAGTCTGT 59.187 47.619 17.54 9.43 0.00 3.41
37 38 2.159503 ACGACATGATCACGAGTCTGTC 60.160 50.000 17.54 15.31 0.00 3.51
38 39 2.159517 CGACATGATCACGAGTCTGTCA 60.160 50.000 19.58 3.70 34.17 3.58
39 40 3.175152 GACATGATCACGAGTCTGTCAC 58.825 50.000 16.39 0.00 34.57 3.67
40 41 2.180397 CATGATCACGAGTCTGTCACG 58.820 52.381 0.00 0.00 36.30 4.35
41 42 0.109735 TGATCACGAGTCTGTCACGC 60.110 55.000 0.00 0.00 33.71 5.34
42 43 0.798771 GATCACGAGTCTGTCACGCC 60.799 60.000 0.00 0.00 33.71 5.68
43 44 2.214181 ATCACGAGTCTGTCACGCCC 62.214 60.000 0.00 0.00 33.71 6.13
44 45 2.910479 ACGAGTCTGTCACGCCCA 60.910 61.111 0.00 0.00 33.71 5.36
45 46 2.430921 CGAGTCTGTCACGCCCAC 60.431 66.667 0.00 0.00 0.00 4.61
72 73 2.651232 CGTCGACGAGGCGGATTC 60.651 66.667 33.35 0.00 45.57 2.52
73 74 2.799371 GTCGACGAGGCGGATTCT 59.201 61.111 0.00 0.00 0.00 2.40
74 75 1.586564 GTCGACGAGGCGGATTCTG 60.587 63.158 0.00 0.00 0.00 3.02
75 76 1.747745 TCGACGAGGCGGATTCTGA 60.748 57.895 0.00 0.00 0.00 3.27
76 77 1.101635 TCGACGAGGCGGATTCTGAT 61.102 55.000 0.00 0.00 0.00 2.90
77 78 0.936764 CGACGAGGCGGATTCTGATG 60.937 60.000 0.00 0.00 0.00 3.07
78 79 0.385751 GACGAGGCGGATTCTGATGA 59.614 55.000 0.00 0.00 0.00 2.92
79 80 0.387202 ACGAGGCGGATTCTGATGAG 59.613 55.000 0.00 0.00 0.00 2.90
80 81 0.319383 CGAGGCGGATTCTGATGAGG 60.319 60.000 0.00 0.00 0.00 3.86
81 82 1.043816 GAGGCGGATTCTGATGAGGA 58.956 55.000 0.00 0.00 0.00 3.71
82 83 1.414181 GAGGCGGATTCTGATGAGGAA 59.586 52.381 0.00 0.00 0.00 3.36
83 84 1.839994 AGGCGGATTCTGATGAGGAAA 59.160 47.619 0.00 0.00 0.00 3.13
84 85 2.239654 AGGCGGATTCTGATGAGGAAAA 59.760 45.455 0.00 0.00 0.00 2.29
85 86 2.615912 GGCGGATTCTGATGAGGAAAAG 59.384 50.000 0.00 0.00 0.00 2.27
86 87 3.274288 GCGGATTCTGATGAGGAAAAGT 58.726 45.455 0.00 0.00 0.00 2.66
87 88 4.442706 GCGGATTCTGATGAGGAAAAGTA 58.557 43.478 0.00 0.00 0.00 2.24
88 89 4.876107 GCGGATTCTGATGAGGAAAAGTAA 59.124 41.667 0.00 0.00 0.00 2.24
89 90 5.220681 GCGGATTCTGATGAGGAAAAGTAAC 60.221 44.000 0.00 0.00 0.00 2.50
90 91 5.874810 CGGATTCTGATGAGGAAAAGTAACA 59.125 40.000 0.00 0.00 0.00 2.41
91 92 6.183360 CGGATTCTGATGAGGAAAAGTAACAC 60.183 42.308 0.00 0.00 0.00 3.32
92 93 6.655003 GGATTCTGATGAGGAAAAGTAACACA 59.345 38.462 0.00 0.00 0.00 3.72
93 94 7.337942 GGATTCTGATGAGGAAAAGTAACACAT 59.662 37.037 0.00 0.00 0.00 3.21
94 95 7.439157 TTCTGATGAGGAAAAGTAACACATG 57.561 36.000 0.00 0.00 0.00 3.21
95 96 5.939883 TCTGATGAGGAAAAGTAACACATGG 59.060 40.000 0.00 0.00 0.00 3.66
96 97 5.009631 TGATGAGGAAAAGTAACACATGGG 58.990 41.667 0.00 0.00 0.00 4.00
97 98 4.715534 TGAGGAAAAGTAACACATGGGA 57.284 40.909 0.00 0.00 0.00 4.37
98 99 5.055265 TGAGGAAAAGTAACACATGGGAA 57.945 39.130 0.00 0.00 0.00 3.97
99 100 5.070001 TGAGGAAAAGTAACACATGGGAAG 58.930 41.667 0.00 0.00 0.00 3.46
100 101 3.826729 AGGAAAAGTAACACATGGGAAGC 59.173 43.478 0.00 0.00 0.00 3.86
101 102 3.056821 GGAAAAGTAACACATGGGAAGCC 60.057 47.826 0.00 0.00 0.00 4.35
102 103 1.821216 AAGTAACACATGGGAAGCCG 58.179 50.000 0.00 0.00 0.00 5.52
103 104 0.676782 AGTAACACATGGGAAGCCGC 60.677 55.000 0.00 0.00 0.00 6.53
104 105 1.377987 TAACACATGGGAAGCCGCC 60.378 57.895 0.00 0.00 0.00 6.13
117 118 3.041940 CCGCCGCGACTTGTTTCT 61.042 61.111 15.93 0.00 0.00 2.52
166 169 1.668628 CCGCAACTTCATTTTTCGGGG 60.669 52.381 0.00 0.00 32.55 5.73
170 173 2.286365 ACTTCATTTTTCGGGGCTCA 57.714 45.000 0.00 0.00 0.00 4.26
172 175 1.885887 CTTCATTTTTCGGGGCTCACA 59.114 47.619 0.00 0.00 0.00 3.58
173 176 2.214376 TCATTTTTCGGGGCTCACAT 57.786 45.000 0.00 0.00 0.00 3.21
174 177 2.524306 TCATTTTTCGGGGCTCACATT 58.476 42.857 0.00 0.00 0.00 2.71
177 180 0.035598 TTTTCGGGGCTCACATTCGA 59.964 50.000 0.00 0.00 0.00 3.71
205 208 0.390860 CTCGCTAGACATGGGGAAGG 59.609 60.000 0.00 0.00 0.00 3.46
212 215 1.077501 ACATGGGGAAGGCATGTCG 60.078 57.895 0.00 0.00 34.86 4.35
220 223 0.521735 GAAGGCATGTCGTGGGAAAC 59.478 55.000 0.00 0.00 0.00 2.78
224 228 0.889186 GCATGTCGTGGGAAACAGGT 60.889 55.000 0.00 0.00 36.39 4.00
232 236 2.594592 GGAAACAGGTGCTGCCGT 60.595 61.111 0.00 0.00 43.70 5.68
257 261 5.182001 GGCCGACGATTATTTAGACTAGGTA 59.818 44.000 0.00 0.00 0.00 3.08
290 294 6.263516 AGTTCGCTATAGTTCAGTTGTGTA 57.736 37.500 0.84 0.00 0.00 2.90
291 295 6.684686 AGTTCGCTATAGTTCAGTTGTGTAA 58.315 36.000 0.84 0.00 0.00 2.41
341 345 3.788333 AAATCATCCGGTTTGCATGAG 57.212 42.857 0.00 0.00 25.37 2.90
346 350 2.787473 TCCGGTTTGCATGAGATTCT 57.213 45.000 0.00 0.00 0.00 2.40
349 353 3.826157 TCCGGTTTGCATGAGATTCTTTT 59.174 39.130 0.00 0.00 0.00 2.27
350 354 4.280677 TCCGGTTTGCATGAGATTCTTTTT 59.719 37.500 0.00 0.00 0.00 1.94
389 393 3.944250 CTGGTTGGATGGCCGGCTT 62.944 63.158 28.56 14.87 36.79 4.35
405 409 1.084370 GCTTCCGAATCACTGTCCGG 61.084 60.000 0.00 0.00 43.02 5.14
406 410 0.246635 CTTCCGAATCACTGTCCGGT 59.753 55.000 0.00 0.00 42.34 5.28
423 427 0.309612 GGTGTGTCCGCGAACAAATT 59.690 50.000 8.23 0.00 0.00 1.82
428 432 0.452122 GTCCGCGAACAAATTCCGTG 60.452 55.000 8.23 0.00 30.85 4.94
432 436 1.722464 CGCGAACAAATTCCGTGTCTA 59.278 47.619 0.00 0.00 0.00 2.59
443 447 7.884354 ACAAATTCCGTGTCTATTTTAGGGTTA 59.116 33.333 0.00 0.00 0.00 2.85
482 486 7.470841 GCCCTTAGACTTACCAAACAAAATTGA 60.471 37.037 0.00 0.00 31.84 2.57
483 487 7.865889 CCCTTAGACTTACCAAACAAAATTGAC 59.134 37.037 0.00 0.00 31.84 3.18
484 488 8.410141 CCTTAGACTTACCAAACAAAATTGACA 58.590 33.333 0.00 0.00 31.84 3.58
488 492 6.337356 ACTTACCAAACAAAATTGACAGGTG 58.663 36.000 13.96 5.57 33.54 4.00
506 510 3.090219 GCTACGCGTTCCCCATCCT 62.090 63.158 20.78 0.00 0.00 3.24
509 513 0.974010 TACGCGTTCCCCATCCTCTT 60.974 55.000 20.78 0.00 0.00 2.85
534 538 8.592105 TCACCTCACAATTTTCATCATTTTTC 57.408 30.769 0.00 0.00 0.00 2.29
540 544 8.640651 TCACAATTTTCATCATTTTTCCTCTCA 58.359 29.630 0.00 0.00 0.00 3.27
557 561 8.525290 TTCCTCTCAATTTAAAGATTCCCATC 57.475 34.615 0.00 0.00 0.00 3.51
595 603 7.168972 TCAATGCCAATTTACTTTTCAGTTTCG 59.831 33.333 0.00 0.00 34.06 3.46
689 752 5.600696 ACAATGTTTTCTCCGCAAAAGAAT 58.399 33.333 0.00 0.00 33.01 2.40
692 1090 7.872483 ACAATGTTTTCTCCGCAAAAGAATAAT 59.128 29.630 0.00 0.00 33.01 1.28
696 1102 9.921637 TGTTTTCTCCGCAAAAGAATAATAATT 57.078 25.926 0.00 0.00 33.01 1.40
715 1121 3.849563 TTAAATCGATGGGAACGGGAT 57.150 42.857 0.00 0.00 0.00 3.85
721 1127 1.687123 CGATGGGAACGGGATAGACTT 59.313 52.381 0.00 0.00 0.00 3.01
722 1128 2.102588 CGATGGGAACGGGATAGACTTT 59.897 50.000 0.00 0.00 0.00 2.66
723 1129 3.431766 CGATGGGAACGGGATAGACTTTT 60.432 47.826 0.00 0.00 0.00 2.27
749 1155 3.009612 TTTTTGACGGGAGGGAACG 57.990 52.632 0.00 0.00 0.00 3.95
750 1156 0.535553 TTTTTGACGGGAGGGAACGG 60.536 55.000 0.00 0.00 0.00 4.44
751 1157 2.400269 TTTTGACGGGAGGGAACGGG 62.400 60.000 0.00 0.00 0.00 5.28
878 1316 3.900892 ATCGATCCGCGGCGTCTT 61.901 61.111 23.51 8.41 41.33 3.01
880 1318 3.617538 CGATCCGCGGCGTCTTTC 61.618 66.667 23.51 8.96 36.03 2.62
1006 1481 2.118404 CGCACAACCAACCACCACT 61.118 57.895 0.00 0.00 0.00 4.00
1007 1482 1.437160 GCACAACCAACCACCACTG 59.563 57.895 0.00 0.00 0.00 3.66
1010 1485 0.751643 ACAACCAACCACCACTGCTC 60.752 55.000 0.00 0.00 0.00 4.26
1031 1509 0.546122 TCCTCCAATCCCACATTCGG 59.454 55.000 0.00 0.00 0.00 4.30
1379 1865 4.840005 GCTTCGGCGGCTAGGCTT 62.840 66.667 15.11 0.00 44.22 4.35
1485 2519 2.290641 ACTGAATCGTGGAACAAAGTGC 59.709 45.455 0.00 0.00 44.16 4.40
1592 2646 7.473027 AAAATTGTTCTTCTGTGATGCAAAG 57.527 32.000 0.00 0.00 0.00 2.77
1612 2666 3.660111 GCGTGCGCTTGGGAGTTT 61.660 61.111 9.73 0.00 38.26 2.66
1708 2771 2.489329 ACATCATTTGCTCCGTTTCTGG 59.511 45.455 0.00 0.00 0.00 3.86
1714 2777 5.242838 TCATTTGCTCCGTTTCTGGTATTTT 59.757 36.000 0.00 0.00 0.00 1.82
1715 2778 6.431543 TCATTTGCTCCGTTTCTGGTATTTTA 59.568 34.615 0.00 0.00 0.00 1.52
1777 2860 8.109705 ACTCTTATTATGTTGCAACAATGTGA 57.890 30.769 34.06 23.38 43.03 3.58
1780 2863 9.571810 TCTTATTATGTTGCAACAATGTGATTC 57.428 29.630 34.06 2.78 43.03 2.52
1783 2866 7.640616 TTATGTTGCAACAATGTGATTCTTG 57.359 32.000 34.06 0.00 43.03 3.02
1784 2867 5.008619 TGTTGCAACAATGTGATTCTTGT 57.991 34.783 29.36 0.00 37.19 3.16
1786 2869 4.915158 TGCAACAATGTGATTCTTGTGA 57.085 36.364 0.00 0.00 35.82 3.58
1787 2870 5.456548 TGCAACAATGTGATTCTTGTGAT 57.543 34.783 0.00 0.00 35.82 3.06
1789 2872 5.921976 TGCAACAATGTGATTCTTGTGATTC 59.078 36.000 0.00 0.00 35.82 2.52
1791 2874 6.643770 GCAACAATGTGATTCTTGTGATTCTT 59.356 34.615 0.00 0.00 35.82 2.52
1793 2876 7.281040 ACAATGTGATTCTTGTGATTCTTGT 57.719 32.000 0.00 0.00 34.43 3.16
1855 3005 5.855395 CACTTGCTCTATTTCTGCTGTTTTC 59.145 40.000 0.00 0.00 0.00 2.29
1858 3011 6.639632 TGCTCTATTTCTGCTGTTTTCTTT 57.360 33.333 0.00 0.00 0.00 2.52
1859 3012 7.042797 TGCTCTATTTCTGCTGTTTTCTTTT 57.957 32.000 0.00 0.00 0.00 2.27
1860 3013 7.491682 TGCTCTATTTCTGCTGTTTTCTTTTT 58.508 30.769 0.00 0.00 0.00 1.94
1944 4079 9.556030 GCAACAACTTAATCCTTCAGTTTATAC 57.444 33.333 0.00 0.00 0.00 1.47
2008 4144 9.881649 TTTCCTATATCATATGATGCTCTTGAC 57.118 33.333 25.44 0.00 36.05 3.18
2027 4163 6.958192 TCTTGACTAGGGGAGTTTAGTTACAT 59.042 38.462 0.00 0.00 39.06 2.29
2096 4234 7.549134 TGTGTTTACTGTATTAGCAGGAATGAG 59.451 37.037 0.00 0.00 38.91 2.90
2106 4244 9.162764 GTATTAGCAGGAATGAGAAACAGTTAA 57.837 33.333 0.00 0.00 0.00 2.01
2108 4246 5.869579 AGCAGGAATGAGAAACAGTTAAGA 58.130 37.500 0.00 0.00 0.00 2.10
2116 4254 8.621532 AATGAGAAACAGTTAAGAGTGCAATA 57.378 30.769 0.00 0.00 0.00 1.90
2120 4258 6.998673 AGAAACAGTTAAGAGTGCAATAACCT 59.001 34.615 0.00 0.00 31.43 3.50
2134 4272 6.374333 GTGCAATAACCTGTGAATCCTAGAAA 59.626 38.462 0.00 0.00 0.00 2.52
2143 4281 6.098982 CCTGTGAATCCTAGAAACCTACAGAT 59.901 42.308 0.00 0.00 36.12 2.90
2178 4316 5.172771 GCGAGCAATGAAAAATGAGAATAGC 59.827 40.000 0.00 0.00 0.00 2.97
2179 4317 6.493116 CGAGCAATGAAAAATGAGAATAGCT 58.507 36.000 0.00 0.00 0.00 3.32
2182 4320 8.284945 AGCAATGAAAAATGAGAATAGCTGTA 57.715 30.769 0.00 0.00 0.00 2.74
2183 4321 8.910944 AGCAATGAAAAATGAGAATAGCTGTAT 58.089 29.630 0.00 0.00 0.00 2.29
2259 5161 9.449719 GGAGAAAATGGAAGTATCAAGTTCTTA 57.550 33.333 0.00 0.00 35.67 2.10
2313 5215 3.688694 TCCGGTAACAAGTAGCACAAT 57.311 42.857 0.00 0.00 0.00 2.71
2338 5242 6.367695 TCATACTTTTCAAGGTGTACACATCG 59.632 38.462 26.51 10.51 30.81 3.84
2340 5244 1.424403 TTCAAGGTGTACACATCGCG 58.576 50.000 26.51 12.42 30.81 5.87
2347 5251 0.244178 TGTACACATCGCGGCAGTTA 59.756 50.000 6.13 0.00 0.00 2.24
2442 5351 6.628185 AGTCTTGATAATAGGTTTCGTCGTT 58.372 36.000 0.00 0.00 0.00 3.85
2465 5374 6.605471 TCTCATAAGCGGTACCAATATGAT 57.395 37.500 22.02 1.14 33.78 2.45
2489 5398 3.023832 CGCCATAAGAAATCCCCAAACT 58.976 45.455 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.928229 GTCGTCAGTGTGTCAACCAC 59.072 55.000 0.00 0.00 44.78 4.16
2 3 0.533032 TGTCGTCAGTGTGTCAACCA 59.467 50.000 0.00 0.00 0.00 3.67
4 5 2.469826 TCATGTCGTCAGTGTGTCAAC 58.530 47.619 0.00 0.00 0.00 3.18
5 6 2.880963 TCATGTCGTCAGTGTGTCAA 57.119 45.000 0.00 0.00 0.00 3.18
6 7 2.295909 TGATCATGTCGTCAGTGTGTCA 59.704 45.455 0.00 0.00 0.00 3.58
7 8 2.663602 GTGATCATGTCGTCAGTGTGTC 59.336 50.000 0.00 0.00 0.00 3.67
8 9 2.677199 GTGATCATGTCGTCAGTGTGT 58.323 47.619 0.00 0.00 0.00 3.72
9 10 1.650645 CGTGATCATGTCGTCAGTGTG 59.349 52.381 6.77 0.00 0.00 3.82
10 11 1.539827 TCGTGATCATGTCGTCAGTGT 59.460 47.619 14.52 0.00 0.00 3.55
11 12 2.180397 CTCGTGATCATGTCGTCAGTG 58.820 52.381 14.52 0.00 0.00 3.66
12 13 1.813178 ACTCGTGATCATGTCGTCAGT 59.187 47.619 14.52 7.50 0.00 3.41
13 14 2.096657 AGACTCGTGATCATGTCGTCAG 59.903 50.000 26.57 16.12 34.92 3.51
14 15 2.084546 AGACTCGTGATCATGTCGTCA 58.915 47.619 26.57 7.62 34.92 4.35
15 16 2.159503 ACAGACTCGTGATCATGTCGTC 60.160 50.000 21.75 21.75 34.92 4.20
16 17 1.813178 ACAGACTCGTGATCATGTCGT 59.187 47.619 14.52 12.43 34.92 4.34
17 18 2.159517 TGACAGACTCGTGATCATGTCG 60.160 50.000 14.52 6.35 39.86 4.35
18 19 3.175152 GTGACAGACTCGTGATCATGTC 58.825 50.000 14.52 14.80 38.00 3.06
19 20 2.414691 CGTGACAGACTCGTGATCATGT 60.415 50.000 14.52 5.96 0.00 3.21
20 21 2.180397 CGTGACAGACTCGTGATCATG 58.820 52.381 8.74 8.74 0.00 3.07
21 22 1.468224 GCGTGACAGACTCGTGATCAT 60.468 52.381 0.00 0.00 37.72 2.45
22 23 0.109735 GCGTGACAGACTCGTGATCA 60.110 55.000 0.00 0.00 37.72 2.92
23 24 0.798771 GGCGTGACAGACTCGTGATC 60.799 60.000 0.00 0.00 37.72 2.92
24 25 1.213013 GGCGTGACAGACTCGTGAT 59.787 57.895 0.00 0.00 37.72 3.06
25 26 2.643272 GGCGTGACAGACTCGTGA 59.357 61.111 0.00 0.00 37.72 4.35
26 27 2.430921 GGGCGTGACAGACTCGTG 60.431 66.667 0.00 0.00 37.72 4.35
27 28 2.910479 TGGGCGTGACAGACTCGT 60.910 61.111 0.00 0.00 37.72 4.18
28 29 2.430921 GTGGGCGTGACAGACTCG 60.431 66.667 0.00 0.00 38.32 4.18
29 30 2.430921 CGTGGGCGTGACAGACTC 60.431 66.667 0.00 0.00 0.00 3.36
55 56 2.651232 GAATCCGCCTCGTCGACG 60.651 66.667 31.30 31.30 41.45 5.12
56 57 1.586564 CAGAATCCGCCTCGTCGAC 60.587 63.158 5.18 5.18 0.00 4.20
57 58 1.101635 ATCAGAATCCGCCTCGTCGA 61.102 55.000 0.00 0.00 0.00 4.20
58 59 0.936764 CATCAGAATCCGCCTCGTCG 60.937 60.000 0.00 0.00 0.00 5.12
59 60 0.385751 TCATCAGAATCCGCCTCGTC 59.614 55.000 0.00 0.00 0.00 4.20
60 61 0.387202 CTCATCAGAATCCGCCTCGT 59.613 55.000 0.00 0.00 0.00 4.18
61 62 0.319383 CCTCATCAGAATCCGCCTCG 60.319 60.000 0.00 0.00 0.00 4.63
62 63 1.043816 TCCTCATCAGAATCCGCCTC 58.956 55.000 0.00 0.00 0.00 4.70
63 64 1.500474 TTCCTCATCAGAATCCGCCT 58.500 50.000 0.00 0.00 0.00 5.52
64 65 2.332063 TTTCCTCATCAGAATCCGCC 57.668 50.000 0.00 0.00 0.00 6.13
65 66 3.274288 ACTTTTCCTCATCAGAATCCGC 58.726 45.455 0.00 0.00 0.00 5.54
66 67 5.874810 TGTTACTTTTCCTCATCAGAATCCG 59.125 40.000 0.00 0.00 0.00 4.18
67 68 6.655003 TGTGTTACTTTTCCTCATCAGAATCC 59.345 38.462 0.00 0.00 0.00 3.01
68 69 7.672983 TGTGTTACTTTTCCTCATCAGAATC 57.327 36.000 0.00 0.00 0.00 2.52
69 70 7.121759 CCATGTGTTACTTTTCCTCATCAGAAT 59.878 37.037 0.00 0.00 0.00 2.40
70 71 6.430925 CCATGTGTTACTTTTCCTCATCAGAA 59.569 38.462 0.00 0.00 0.00 3.02
71 72 5.939883 CCATGTGTTACTTTTCCTCATCAGA 59.060 40.000 0.00 0.00 0.00 3.27
72 73 5.124457 CCCATGTGTTACTTTTCCTCATCAG 59.876 44.000 0.00 0.00 0.00 2.90
73 74 5.009631 CCCATGTGTTACTTTTCCTCATCA 58.990 41.667 0.00 0.00 0.00 3.07
74 75 5.253330 TCCCATGTGTTACTTTTCCTCATC 58.747 41.667 0.00 0.00 0.00 2.92
75 76 5.255397 TCCCATGTGTTACTTTTCCTCAT 57.745 39.130 0.00 0.00 0.00 2.90
76 77 4.715534 TCCCATGTGTTACTTTTCCTCA 57.284 40.909 0.00 0.00 0.00 3.86
77 78 4.082733 GCTTCCCATGTGTTACTTTTCCTC 60.083 45.833 0.00 0.00 0.00 3.71
78 79 3.826729 GCTTCCCATGTGTTACTTTTCCT 59.173 43.478 0.00 0.00 0.00 3.36
79 80 3.056821 GGCTTCCCATGTGTTACTTTTCC 60.057 47.826 0.00 0.00 0.00 3.13
80 81 3.365969 CGGCTTCCCATGTGTTACTTTTC 60.366 47.826 0.00 0.00 0.00 2.29
81 82 2.556622 CGGCTTCCCATGTGTTACTTTT 59.443 45.455 0.00 0.00 0.00 2.27
82 83 2.159382 CGGCTTCCCATGTGTTACTTT 58.841 47.619 0.00 0.00 0.00 2.66
83 84 1.821216 CGGCTTCCCATGTGTTACTT 58.179 50.000 0.00 0.00 0.00 2.24
84 85 0.676782 GCGGCTTCCCATGTGTTACT 60.677 55.000 0.00 0.00 0.00 2.24
85 86 1.654023 GGCGGCTTCCCATGTGTTAC 61.654 60.000 0.00 0.00 0.00 2.50
86 87 1.377987 GGCGGCTTCCCATGTGTTA 60.378 57.895 0.00 0.00 0.00 2.41
87 88 2.676471 GGCGGCTTCCCATGTGTT 60.676 61.111 0.00 0.00 0.00 3.32
99 100 4.736631 GAAACAAGTCGCGGCGGC 62.737 66.667 20.79 20.79 0.00 6.53
100 101 3.011760 GAGAAACAAGTCGCGGCGG 62.012 63.158 23.46 8.74 0.00 6.13
101 102 2.215478 CTGAGAAACAAGTCGCGGCG 62.215 60.000 17.70 17.70 0.00 6.46
102 103 1.493311 CTGAGAAACAAGTCGCGGC 59.507 57.895 0.21 0.21 0.00 6.53
103 104 0.319555 TCCTGAGAAACAAGTCGCGG 60.320 55.000 6.13 0.00 0.00 6.46
104 105 1.457303 CTTCCTGAGAAACAAGTCGCG 59.543 52.381 0.00 0.00 0.00 5.87
105 106 1.801178 CCTTCCTGAGAAACAAGTCGC 59.199 52.381 0.00 0.00 0.00 5.19
106 107 1.801178 GCCTTCCTGAGAAACAAGTCG 59.199 52.381 0.00 0.00 0.00 4.18
107 108 2.155279 GGCCTTCCTGAGAAACAAGTC 58.845 52.381 0.00 0.00 0.00 3.01
108 109 1.494721 TGGCCTTCCTGAGAAACAAGT 59.505 47.619 3.32 0.00 0.00 3.16
109 110 1.882623 GTGGCCTTCCTGAGAAACAAG 59.117 52.381 3.32 0.00 0.00 3.16
117 118 3.995636 AGAATAGTAGTGGCCTTCCTGA 58.004 45.455 3.32 0.00 0.00 3.86
166 169 1.078759 CTCACCGGTCGAATGTGAGC 61.079 60.000 20.51 0.00 46.50 4.26
170 173 1.215647 GAGCTCACCGGTCGAATGT 59.784 57.895 2.59 0.00 0.00 2.71
177 180 2.045242 TCTAGCGAGCTCACCGGT 60.045 61.111 15.40 0.00 40.93 5.28
205 208 0.889186 ACCTGTTTCCCACGACATGC 60.889 55.000 0.00 0.00 0.00 4.06
212 215 2.564721 GGCAGCACCTGTTTCCCAC 61.565 63.158 0.00 0.00 33.43 4.61
232 236 4.022589 CCTAGTCTAAATAATCGTCGGCCA 60.023 45.833 2.24 0.00 0.00 5.36
270 274 7.949903 TTTTTACACAACTGAACTATAGCGA 57.050 32.000 0.00 0.00 0.00 4.93
291 295 9.280174 TCTAAAGGTCAGAATCGTTACATTTTT 57.720 29.630 0.00 0.00 29.73 1.94
354 358 8.356000 TCCAACCAGATTTTAAACCGAATATT 57.644 30.769 0.00 0.00 0.00 1.28
355 359 7.948034 TCCAACCAGATTTTAAACCGAATAT 57.052 32.000 0.00 0.00 0.00 1.28
356 360 7.147983 CCATCCAACCAGATTTTAAACCGAATA 60.148 37.037 0.00 0.00 0.00 1.75
357 361 6.350949 CCATCCAACCAGATTTTAAACCGAAT 60.351 38.462 0.00 0.00 0.00 3.34
358 362 5.047660 CCATCCAACCAGATTTTAAACCGAA 60.048 40.000 0.00 0.00 0.00 4.30
359 363 4.461081 CCATCCAACCAGATTTTAAACCGA 59.539 41.667 0.00 0.00 0.00 4.69
360 364 4.743493 CCATCCAACCAGATTTTAAACCG 58.257 43.478 0.00 0.00 0.00 4.44
361 365 4.503910 GCCATCCAACCAGATTTTAAACC 58.496 43.478 0.00 0.00 0.00 3.27
366 370 1.185315 CGGCCATCCAACCAGATTTT 58.815 50.000 2.24 0.00 0.00 1.82
372 376 3.936772 GAAGCCGGCCATCCAACCA 62.937 63.158 26.15 0.00 0.00 3.67
389 393 1.183030 ACACCGGACAGTGATTCGGA 61.183 55.000 22.63 0.00 44.69 4.55
393 397 0.034896 GGACACACCGGACAGTGATT 59.965 55.000 25.22 10.14 40.34 2.57
405 409 1.662026 GGAATTTGTTCGCGGACACAC 60.662 52.381 22.39 11.46 0.00 3.82
406 410 0.589223 GGAATTTGTTCGCGGACACA 59.411 50.000 22.39 15.58 0.00 3.72
423 427 5.104859 TGCATAACCCTAAAATAGACACGGA 60.105 40.000 0.00 0.00 0.00 4.69
428 432 7.502561 ACTCCAATGCATAACCCTAAAATAGAC 59.497 37.037 0.00 0.00 0.00 2.59
432 436 6.630188 GCAACTCCAATGCATAACCCTAAAAT 60.630 38.462 0.00 0.00 43.29 1.82
443 447 2.025037 TCTAAGGGCAACTCCAATGCAT 60.025 45.455 0.00 0.00 45.60 3.96
506 510 7.528996 AATGATGAAAATTGTGAGGTGAAGA 57.471 32.000 0.00 0.00 0.00 2.87
509 513 7.656948 GGAAAAATGATGAAAATTGTGAGGTGA 59.343 33.333 0.00 0.00 0.00 4.02
534 538 7.886629 TGATGGGAATCTTTAAATTGAGAGG 57.113 36.000 0.00 0.00 0.00 3.69
590 596 7.645402 TCTAGGGACAAAAGAAAATTCGAAAC 58.355 34.615 0.00 0.00 0.00 2.78
595 603 8.731605 CCTAGTTCTAGGGACAAAAGAAAATTC 58.268 37.037 15.85 0.00 33.60 2.17
689 752 7.451732 TCCCGTTCCCATCGATTTAATTATTA 58.548 34.615 0.00 0.00 0.00 0.98
692 1090 5.293319 TCCCGTTCCCATCGATTTAATTA 57.707 39.130 0.00 0.00 0.00 1.40
696 1102 4.021719 GTCTATCCCGTTCCCATCGATTTA 60.022 45.833 0.00 0.00 0.00 1.40
731 1137 0.535553 CCGTTCCCTCCCGTCAAAAA 60.536 55.000 0.00 0.00 0.00 1.94
732 1138 1.071814 CCGTTCCCTCCCGTCAAAA 59.928 57.895 0.00 0.00 0.00 2.44
733 1139 2.745037 CCGTTCCCTCCCGTCAAA 59.255 61.111 0.00 0.00 0.00 2.69
734 1140 3.315949 CCCGTTCCCTCCCGTCAA 61.316 66.667 0.00 0.00 0.00 3.18
735 1141 4.304413 TCCCGTTCCCTCCCGTCA 62.304 66.667 0.00 0.00 0.00 4.35
736 1142 3.767806 GTCCCGTTCCCTCCCGTC 61.768 72.222 0.00 0.00 0.00 4.79
737 1143 4.626402 TGTCCCGTTCCCTCCCGT 62.626 66.667 0.00 0.00 0.00 5.28
739 1145 3.714001 GGTGTCCCGTTCCCTCCC 61.714 72.222 0.00 0.00 0.00 4.30
740 1146 2.926242 TGGTGTCCCGTTCCCTCC 60.926 66.667 0.00 0.00 0.00 4.30
741 1147 2.663196 CTGGTGTCCCGTTCCCTC 59.337 66.667 0.00 0.00 0.00 4.30
742 1148 3.637273 GCTGGTGTCCCGTTCCCT 61.637 66.667 0.00 0.00 0.00 4.20
749 1155 2.975799 TTTTCGCGCTGGTGTCCC 60.976 61.111 5.56 0.00 0.00 4.46
750 1156 1.852067 ATGTTTTCGCGCTGGTGTCC 61.852 55.000 5.56 0.00 0.00 4.02
751 1157 0.452784 GATGTTTTCGCGCTGGTGTC 60.453 55.000 5.56 0.00 0.00 3.67
851 1289 2.663188 GGATCGATGACCTGGCGC 60.663 66.667 0.54 0.00 0.00 6.53
1006 1481 1.082766 TGGGATTGGAGGAGGAGCA 59.917 57.895 0.00 0.00 0.00 4.26
1007 1482 1.274703 TGTGGGATTGGAGGAGGAGC 61.275 60.000 0.00 0.00 0.00 4.70
1010 1485 1.475751 CGAATGTGGGATTGGAGGAGG 60.476 57.143 0.00 0.00 0.00 4.30
1393 1881 1.905839 TTTGGGATATCTGCAGGGGA 58.094 50.000 15.13 0.00 0.00 4.81
1394 1882 2.590821 CTTTTGGGATATCTGCAGGGG 58.409 52.381 15.13 0.00 0.00 4.79
1397 1885 3.949754 TCAAGCTTTTGGGATATCTGCAG 59.050 43.478 7.63 7.63 0.00 4.41
1398 1886 3.966979 TCAAGCTTTTGGGATATCTGCA 58.033 40.909 0.00 0.00 0.00 4.41
1399 1887 4.261909 CCATCAAGCTTTTGGGATATCTGC 60.262 45.833 14.87 0.00 0.00 4.26
1400 1888 5.135383 TCCATCAAGCTTTTGGGATATCTG 58.865 41.667 20.12 1.91 0.00 2.90
1401 1889 5.393068 TCCATCAAGCTTTTGGGATATCT 57.607 39.130 20.12 0.00 0.00 1.98
1402 1890 5.221322 GGTTCCATCAAGCTTTTGGGATATC 60.221 44.000 20.12 0.00 0.00 1.63
1440 2473 6.125327 TCGAACTACAGAGCAAATAGAGAG 57.875 41.667 0.00 0.00 0.00 3.20
1592 2646 4.389576 CTCCCAAGCGCACGCAAC 62.390 66.667 18.24 0.00 44.88 4.17
1634 2688 3.296854 AGCAAGTACGATCCATCAGGTA 58.703 45.455 0.00 0.00 35.89 3.08
1635 2689 2.111384 AGCAAGTACGATCCATCAGGT 58.889 47.619 0.00 0.00 35.89 4.00
1641 2702 0.739462 CGGCAAGCAAGTACGATCCA 60.739 55.000 0.00 0.00 0.00 3.41
1708 2771 9.884465 GGTACAAATGCATCAGATCTAAAATAC 57.116 33.333 0.00 0.00 0.00 1.89
1714 2777 4.503123 CCCGGTACAAATGCATCAGATCTA 60.503 45.833 0.00 0.00 0.00 1.98
1715 2778 3.470709 CCGGTACAAATGCATCAGATCT 58.529 45.455 0.00 0.00 0.00 2.75
1751 2814 8.575589 TCACATTGTTGCAACATAATAAGAGTT 58.424 29.630 31.48 4.54 38.95 3.01
1752 2815 8.109705 TCACATTGTTGCAACATAATAAGAGT 57.890 30.769 31.48 15.90 38.95 3.24
1753 2816 9.577110 AATCACATTGTTGCAACATAATAAGAG 57.423 29.630 31.48 15.32 38.95 2.85
1758 2821 7.874016 ACAAGAATCACATTGTTGCAACATAAT 59.126 29.630 31.48 20.48 44.60 1.28
1777 2860 7.211573 TGATTTGCAACAAGAATCACAAGAAT 58.788 30.769 0.00 0.00 35.51 2.40
1780 2863 6.643360 TGATGATTTGCAACAAGAATCACAAG 59.357 34.615 11.86 0.00 41.14 3.16
1783 2866 6.588756 ACATGATGATTTGCAACAAGAATCAC 59.411 34.615 11.86 7.80 41.14 3.06
1784 2867 6.588373 CACATGATGATTTGCAACAAGAATCA 59.412 34.615 11.98 11.98 42.14 2.57
1786 2869 6.693466 TCACATGATGATTTGCAACAAGAAT 58.307 32.000 0.00 0.00 32.72 2.40
1787 2870 6.086785 TCACATGATGATTTGCAACAAGAA 57.913 33.333 0.00 0.00 32.72 2.52
1859 3012 5.682943 ATTACTGCAGTAACAGCGAAAAA 57.317 34.783 35.31 16.29 42.55 1.94
1860 3013 5.929992 AGTATTACTGCAGTAACAGCGAAAA 59.070 36.000 35.31 16.99 42.55 2.29
1861 3014 5.475719 AGTATTACTGCAGTAACAGCGAAA 58.524 37.500 35.31 17.68 42.55 3.46
1862 3015 5.068234 AGTATTACTGCAGTAACAGCGAA 57.932 39.130 35.31 18.39 42.55 4.70
1863 3016 4.713824 AGTATTACTGCAGTAACAGCGA 57.286 40.909 35.31 17.44 42.55 4.93
1864 3017 4.862574 TGAAGTATTACTGCAGTAACAGCG 59.137 41.667 35.31 2.39 42.55 5.18
1865 3018 6.758886 AGATGAAGTATTACTGCAGTAACAGC 59.241 38.462 35.31 28.88 37.15 4.40
1866 3019 7.976175 TCAGATGAAGTATTACTGCAGTAACAG 59.024 37.037 35.31 19.27 37.15 3.16
1962 4097 6.040616 AGGAAAATGAAGATGGAGAATGATGC 59.959 38.462 0.00 0.00 0.00 3.91
2002 4138 6.317312 TGTAACTAAACTCCCCTAGTCAAGA 58.683 40.000 0.00 0.00 37.50 3.02
2005 4141 8.849543 ATTATGTAACTAAACTCCCCTAGTCA 57.150 34.615 0.00 0.00 37.50 3.41
2096 4234 7.078228 CAGGTTATTGCACTCTTAACTGTTTC 58.922 38.462 0.00 0.00 0.00 2.78
2106 4244 4.018960 AGGATTCACAGGTTATTGCACTCT 60.019 41.667 0.00 0.00 0.00 3.24
2108 4246 4.307032 AGGATTCACAGGTTATTGCACT 57.693 40.909 0.00 0.00 0.00 4.40
2116 4254 5.546499 TGTAGGTTTCTAGGATTCACAGGTT 59.454 40.000 0.00 0.00 0.00 3.50
2120 4258 6.440647 ACATCTGTAGGTTTCTAGGATTCACA 59.559 38.462 0.00 0.00 0.00 3.58
2134 4272 0.973632 TGGCGTTCACATCTGTAGGT 59.026 50.000 0.00 0.00 0.00 3.08
2143 4281 4.600576 TGCTCGCTGGCGTTCACA 62.601 61.111 14.55 6.42 40.74 3.58
2178 4316 8.820933 CCACACATGATAGTGAAGTAAATACAG 58.179 37.037 15.66 0.00 42.05 2.74
2179 4317 7.768582 CCCACACATGATAGTGAAGTAAATACA 59.231 37.037 15.66 0.00 42.05 2.29
2182 4320 5.590259 GCCCACACATGATAGTGAAGTAAAT 59.410 40.000 15.66 0.00 42.05 1.40
2183 4321 4.941263 GCCCACACATGATAGTGAAGTAAA 59.059 41.667 15.66 0.00 42.05 2.01
2185 4323 3.517500 TGCCCACACATGATAGTGAAGTA 59.482 43.478 15.66 6.76 42.05 2.24
2186 4324 2.305635 TGCCCACACATGATAGTGAAGT 59.694 45.455 15.66 0.00 42.05 3.01
2187 4325 2.989909 TGCCCACACATGATAGTGAAG 58.010 47.619 15.66 9.69 42.05 3.02
2259 5161 8.304596 TCTCTGAATCGAAGTAAATACAACACT 58.695 33.333 0.00 0.00 0.00 3.55
2273 5175 4.253685 GGATTGTGGTTCTCTGAATCGAA 58.746 43.478 0.00 0.00 0.00 3.71
2313 5215 6.367695 CGATGTGTACACCTTGAAAAGTATGA 59.632 38.462 22.91 0.00 44.25 2.15
2338 5242 5.324697 CAATCTAAAGTTCTTAACTGCCGC 58.675 41.667 0.00 0.00 41.91 6.53
2340 5244 6.072452 ACAGCAATCTAAAGTTCTTAACTGCC 60.072 38.462 0.00 0.00 41.91 4.85
2347 5251 8.261492 CTGTATGACAGCAATCTAAAGTTCTT 57.739 34.615 0.00 0.00 39.62 2.52
2380 5284 3.218453 TCTCATCCGAGACTCTGGAATC 58.782 50.000 16.49 0.00 43.55 2.52
2411 5320 9.046296 CGAAACCTATTATCAAGACTAAATGCT 57.954 33.333 0.00 0.00 0.00 3.79
2442 5351 6.210584 TGATCATATTGGTACCGCTTATGAGA 59.789 38.462 24.03 15.99 33.98 3.27
2465 5374 1.562008 TGGGGATTTCTTATGGCGTGA 59.438 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.