Multiple sequence alignment - TraesCS6B01G403800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G403800 chr6B 100.000 3306 0 0 1 3306 679386139 679382834 0.000000e+00 6106.0
1 TraesCS6B01G403800 chr6B 87.185 1748 184 18 677 2416 678881219 678882934 0.000000e+00 1951.0
2 TraesCS6B01G403800 chr6B 83.503 2067 280 39 695 2743 678796047 678798070 0.000000e+00 1871.0
3 TraesCS6B01G403800 chr6B 80.778 1285 220 17 783 2057 678807433 678808700 0.000000e+00 979.0
4 TraesCS6B01G403800 chr6B 92.420 686 36 10 1 675 626807593 626806913 0.000000e+00 965.0
5 TraesCS6B01G403800 chr6B 92.094 683 41 8 1 675 52371314 52371991 0.000000e+00 950.0
6 TraesCS6B01G403800 chr6B 87.066 634 56 11 2114 2743 679527256 679526645 0.000000e+00 693.0
7 TraesCS6B01G403800 chr6B 86.921 604 78 1 1048 1651 679363959 679363357 0.000000e+00 676.0
8 TraesCS6B01G403800 chrUn 87.650 2081 214 24 672 2743 79396578 79394532 0.000000e+00 2379.0
9 TraesCS6B01G403800 chrUn 87.066 634 56 11 2114 2743 79369406 79368795 0.000000e+00 693.0
10 TraesCS6B01G403800 chrUn 92.771 332 24 0 672 1003 79369954 79369623 6.420000e-132 481.0
11 TraesCS6B01G403800 chrUn 98.000 50 1 0 3257 3306 30404670 30404621 1.630000e-13 87.9
12 TraesCS6B01G403800 chr6A 89.718 1381 140 2 677 2057 594504080 594505458 0.000000e+00 1762.0
13 TraesCS6B01G403800 chr1B 95.846 674 16 7 1 665 26701664 26702334 0.000000e+00 1079.0
14 TraesCS6B01G403800 chr1B 94.760 687 20 8 1 675 681250181 681249499 0.000000e+00 1055.0
15 TraesCS6B01G403800 chr3B 93.686 681 29 11 1 675 685899832 685900504 0.000000e+00 1007.0
16 TraesCS6B01G403800 chr3B 92.456 676 42 7 1 673 651414158 651413489 0.000000e+00 957.0
17 TraesCS6B01G403800 chr6D 90.945 751 52 7 1307 2057 448047845 448048579 0.000000e+00 996.0
18 TraesCS6B01G403800 chr6D 79.225 1290 216 31 1204 2483 448037180 448038427 0.000000e+00 850.0
19 TraesCS6B01G403800 chr6D 90.351 342 28 3 677 1013 448041330 448041671 8.420000e-121 444.0
20 TraesCS6B01G403800 chr6D 93.333 60 4 0 3247 3306 460160313 460160254 4.540000e-14 89.8
21 TraesCS6B01G403800 chr2B 93.169 688 24 13 1 671 48131686 48132367 0.000000e+00 989.0
22 TraesCS6B01G403800 chr2B 92.555 685 37 11 1 676 712499420 712500099 0.000000e+00 970.0
23 TraesCS6B01G403800 chr2B 95.161 62 2 1 3246 3306 26142155 26142216 2.720000e-16 97.1
24 TraesCS6B01G403800 chr2B 94.828 58 1 1 3249 3306 697693454 697693509 4.540000e-14 89.8
25 TraesCS6B01G403800 chr7B 92.857 686 33 8 1 674 175895413 175894732 0.000000e+00 981.0
26 TraesCS6B01G403800 chr7B 100.000 52 0 0 3255 3306 747436292 747436343 2.720000e-16 97.1
27 TraesCS6B01G403800 chr7D 73.975 1341 255 62 744 2053 603728071 603729348 1.080000e-124 457.0
28 TraesCS6B01G403800 chr7D 100.000 51 0 0 3256 3306 618278663 618278713 9.770000e-16 95.3
29 TraesCS6B01G403800 chr4A 86.978 407 27 4 2781 3184 608149096 608148713 5.070000e-118 435.0
30 TraesCS6B01G403800 chr7A 80.469 256 42 6 1799 2053 696349350 696349598 4.360000e-44 189.0
31 TraesCS6B01G403800 chr2D 100.000 52 0 0 3255 3306 59163303 59163252 2.720000e-16 97.1
32 TraesCS6B01G403800 chr5A 95.000 60 1 2 3248 3305 12822278 12822337 3.510000e-15 93.5
33 TraesCS6B01G403800 chr1D 90.909 66 3 3 3243 3306 250191734 250191798 5.880000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G403800 chr6B 679382834 679386139 3305 True 6106 6106 100.0000 1 3306 1 chr6B.!!$R3 3305
1 TraesCS6B01G403800 chr6B 678881219 678882934 1715 False 1951 1951 87.1850 677 2416 1 chr6B.!!$F4 1739
2 TraesCS6B01G403800 chr6B 678796047 678798070 2023 False 1871 1871 83.5030 695 2743 1 chr6B.!!$F2 2048
3 TraesCS6B01G403800 chr6B 678807433 678808700 1267 False 979 979 80.7780 783 2057 1 chr6B.!!$F3 1274
4 TraesCS6B01G403800 chr6B 626806913 626807593 680 True 965 965 92.4200 1 675 1 chr6B.!!$R1 674
5 TraesCS6B01G403800 chr6B 52371314 52371991 677 False 950 950 92.0940 1 675 1 chr6B.!!$F1 674
6 TraesCS6B01G403800 chr6B 679526645 679527256 611 True 693 693 87.0660 2114 2743 1 chr6B.!!$R4 629
7 TraesCS6B01G403800 chr6B 679363357 679363959 602 True 676 676 86.9210 1048 1651 1 chr6B.!!$R2 603
8 TraesCS6B01G403800 chrUn 79394532 79396578 2046 True 2379 2379 87.6500 672 2743 1 chrUn.!!$R2 2071
9 TraesCS6B01G403800 chrUn 79368795 79369954 1159 True 587 693 89.9185 672 2743 2 chrUn.!!$R3 2071
10 TraesCS6B01G403800 chr6A 594504080 594505458 1378 False 1762 1762 89.7180 677 2057 1 chr6A.!!$F1 1380
11 TraesCS6B01G403800 chr1B 26701664 26702334 670 False 1079 1079 95.8460 1 665 1 chr1B.!!$F1 664
12 TraesCS6B01G403800 chr1B 681249499 681250181 682 True 1055 1055 94.7600 1 675 1 chr1B.!!$R1 674
13 TraesCS6B01G403800 chr3B 685899832 685900504 672 False 1007 1007 93.6860 1 675 1 chr3B.!!$F1 674
14 TraesCS6B01G403800 chr3B 651413489 651414158 669 True 957 957 92.4560 1 673 1 chr3B.!!$R1 672
15 TraesCS6B01G403800 chr6D 448047845 448048579 734 False 996 996 90.9450 1307 2057 1 chr6D.!!$F1 750
16 TraesCS6B01G403800 chr6D 448037180 448041671 4491 False 647 850 84.7880 677 2483 2 chr6D.!!$F2 1806
17 TraesCS6B01G403800 chr2B 48131686 48132367 681 False 989 989 93.1690 1 671 1 chr2B.!!$F2 670
18 TraesCS6B01G403800 chr2B 712499420 712500099 679 False 970 970 92.5550 1 676 1 chr2B.!!$F4 675
19 TraesCS6B01G403800 chr7B 175894732 175895413 681 True 981 981 92.8570 1 674 1 chr7B.!!$R1 673
20 TraesCS6B01G403800 chr7D 603728071 603729348 1277 False 457 457 73.9750 744 2053 1 chr7D.!!$F1 1309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 950 1.210931 CCGTCCTTCGTCGTTGCTA 59.789 57.895 0.0 0.0 37.94 3.49 F
1162 1211 0.321671 CTTCTTGTTCGCCTCTCCCA 59.678 55.000 0.0 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2182 0.107508 ACAATCCACCCATCGCTGAG 60.108 55.0 0.00 0.0 0.00 3.35 R
3052 4466 0.108329 GTACGTCCTGACCATGGGTG 60.108 60.0 18.09 5.3 35.25 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
919 950 1.210931 CCGTCCTTCGTCGTTGCTA 59.789 57.895 0.00 0.00 37.94 3.49
1060 1109 3.542676 ACAGTCGGTGTTCGCCCA 61.543 61.111 0.00 0.00 34.94 5.36
1162 1211 0.321671 CTTCTTGTTCGCCTCTCCCA 59.678 55.000 0.00 0.00 0.00 4.37
1206 1255 0.745128 TGGCAAGTCCGTTGTTCGTT 60.745 50.000 0.00 0.00 38.55 3.85
1232 1281 4.393155 TGCAATCTGCTCGCCGGT 62.393 61.111 1.90 0.00 45.31 5.28
1383 1438 5.428253 TCTTTAAAGTGCTAATCATCGGCT 58.572 37.500 14.74 0.00 0.00 5.52
1728 1786 2.778679 CTAAAGGTCTGCACGCGC 59.221 61.111 5.73 0.00 39.24 6.86
1773 1831 1.076370 TGCTATTGCCAAGGCCACA 59.924 52.632 5.01 0.00 41.09 4.17
2006 2064 0.770499 TTGTTGGAGATGGACTGGCA 59.230 50.000 0.00 0.00 0.00 4.92
2059 2117 5.527214 TGGTAGATGCATGCATGTAAGTAAC 59.473 40.000 36.73 24.76 34.64 2.50
2060 2118 5.527214 GGTAGATGCATGCATGTAAGTAACA 59.473 40.000 36.73 13.72 43.86 2.41
2061 2119 5.490139 AGATGCATGCATGTAAGTAACAC 57.510 39.130 36.73 17.88 42.09 3.32
2062 2120 4.943093 AGATGCATGCATGTAAGTAACACA 59.057 37.500 36.73 13.51 42.09 3.72
2079 2137 5.337578 AACACATGTTACTTGTTTTGCCT 57.662 34.783 0.00 0.00 36.32 4.75
2080 2138 6.458232 AACACATGTTACTTGTTTTGCCTA 57.542 33.333 0.00 0.00 36.32 3.93
2081 2139 6.458232 ACACATGTTACTTGTTTTGCCTAA 57.542 33.333 0.00 0.00 0.00 2.69
2082 2140 7.049799 ACACATGTTACTTGTTTTGCCTAAT 57.950 32.000 0.00 0.00 0.00 1.73
2083 2141 6.922957 ACACATGTTACTTGTTTTGCCTAATG 59.077 34.615 0.00 0.00 0.00 1.90
2084 2142 6.922957 CACATGTTACTTGTTTTGCCTAATGT 59.077 34.615 0.00 0.00 0.00 2.71
2085 2143 6.922957 ACATGTTACTTGTTTTGCCTAATGTG 59.077 34.615 0.00 0.00 0.00 3.21
2086 2144 6.701145 TGTTACTTGTTTTGCCTAATGTGA 57.299 33.333 0.00 0.00 0.00 3.58
2087 2145 7.283625 TGTTACTTGTTTTGCCTAATGTGAT 57.716 32.000 0.00 0.00 0.00 3.06
2088 2146 7.367285 TGTTACTTGTTTTGCCTAATGTGATC 58.633 34.615 0.00 0.00 0.00 2.92
2089 2147 7.013750 TGTTACTTGTTTTGCCTAATGTGATCA 59.986 33.333 0.00 0.00 0.00 2.92
2091 2149 6.624423 ACTTGTTTTGCCTAATGTGATCATC 58.376 36.000 0.00 0.00 32.56 2.92
2092 2150 6.209192 ACTTGTTTTGCCTAATGTGATCATCA 59.791 34.615 0.00 0.00 32.56 3.07
2094 2152 6.798482 TGTTTTGCCTAATGTGATCATCATC 58.202 36.000 0.00 0.00 32.56 2.92
2095 2153 6.604396 TGTTTTGCCTAATGTGATCATCATCT 59.396 34.615 0.00 0.00 32.56 2.90
2096 2154 7.123098 TGTTTTGCCTAATGTGATCATCATCTT 59.877 33.333 0.00 0.00 32.56 2.40
2098 2156 8.750515 TTTGCCTAATGTGATCATCATCTTTA 57.249 30.769 0.00 0.00 32.56 1.85
2100 2158 8.387190 TGCCTAATGTGATCATCATCTTTAAG 57.613 34.615 0.00 0.00 32.56 1.85
2107 2165 9.671279 ATGTGATCATCATCTTTAAGTAACACA 57.329 29.630 0.00 0.00 36.68 3.72
2109 2167 9.926751 GTGATCATCATCTTTAAGTAACACATG 57.073 33.333 0.00 0.00 0.00 3.21
2161 2226 9.551734 TGGATTGTGATCATCATCTTTAAGTAG 57.448 33.333 13.83 0.00 33.77 2.57
2163 2228 8.969260 ATTGTGATCATCATCTTTAAGTAGCA 57.031 30.769 0.00 0.00 0.00 3.49
2164 2229 8.969260 TTGTGATCATCATCTTTAAGTAGCAT 57.031 30.769 0.00 0.00 0.00 3.79
2226 2293 5.103687 GTGCTTAGCTAGGTCTGTCTTAAC 58.896 45.833 5.60 0.00 0.00 2.01
2227 2294 5.017490 TGCTTAGCTAGGTCTGTCTTAACT 58.983 41.667 5.60 0.00 0.00 2.24
2228 2295 5.125739 TGCTTAGCTAGGTCTGTCTTAACTC 59.874 44.000 5.60 0.00 0.00 3.01
2239 2306 5.715753 GTCTGTCTTAACTCTTAAGGGGAGA 59.284 44.000 7.40 4.41 42.23 3.71
2263 2330 9.798994 AGAAGCTTTGATAAGATATTTGCAAAG 57.201 29.630 18.19 16.59 42.88 2.77
2300 2369 4.090354 TCGATTTCGAATAAACGTGTGGAC 59.910 41.667 0.00 0.00 46.30 4.02
2311 2380 2.927004 GTGTGGACGAATCAGGCAA 58.073 52.632 0.00 0.00 0.00 4.52
2351 2422 5.095490 CACGGAGGAATAAAAATGTTGAGC 58.905 41.667 0.00 0.00 0.00 4.26
2362 2433 6.515043 AAAAATGTTGAGCAAATTCTCACG 57.485 33.333 0.00 0.00 42.27 4.35
2377 2449 3.476552 TCTCACGTGAAAGCAAGGATTT 58.523 40.909 20.49 0.00 0.00 2.17
2378 2450 3.250762 TCTCACGTGAAAGCAAGGATTTG 59.749 43.478 20.49 2.96 37.36 2.32
2416 2501 5.794894 AGATAGACTTGACGGTTGATTGTT 58.205 37.500 0.00 0.00 0.00 2.83
2419 2504 7.876068 AGATAGACTTGACGGTTGATTGTTTTA 59.124 33.333 0.00 0.00 0.00 1.52
2420 2505 6.687081 AGACTTGACGGTTGATTGTTTTAA 57.313 33.333 0.00 0.00 0.00 1.52
2455 2540 3.335579 GCGTGAGGGAAGTTAAACATCT 58.664 45.455 0.00 0.00 0.00 2.90
2488 2616 4.944962 TCAGAATTTCACAATGCTACCG 57.055 40.909 0.00 0.00 0.00 4.02
2512 2640 2.580815 GGCGCTAACTAACCCCGT 59.419 61.111 7.64 0.00 0.00 5.28
2523 2651 0.604578 TAACCCCGTGTCACTACTGC 59.395 55.000 0.65 0.00 0.00 4.40
2533 3056 2.820197 TGTCACTACTGCGTTCTCATCT 59.180 45.455 0.00 0.00 0.00 2.90
2590 3113 2.046892 GGCGGCATGGCGAGATAT 60.047 61.111 41.46 0.00 0.00 1.63
2609 3132 1.112315 TGGCGGTGCTTTGGATGTTT 61.112 50.000 0.00 0.00 0.00 2.83
2684 3834 6.604930 TGAACTAACTTTTATTAAGTGGCGC 58.395 36.000 0.00 0.00 0.00 6.53
2698 3848 1.958205 GGCGCCATTCCTCATCGAG 60.958 63.158 24.80 0.00 0.00 4.04
2704 3854 2.300152 GCCATTCCTCATCGAGACCATA 59.700 50.000 0.00 0.00 0.00 2.74
2712 3862 2.499693 TCATCGAGACCATAAGGCAACA 59.500 45.455 0.00 0.00 39.06 3.33
2723 3873 4.475944 CATAAGGCAACACTGTAAACTGC 58.524 43.478 0.00 0.00 41.41 4.40
2745 4159 6.003326 TGCTGGAGAATGTATTTTCACAAGA 58.997 36.000 0.00 0.00 30.84 3.02
2746 4160 6.149973 TGCTGGAGAATGTATTTTCACAAGAG 59.850 38.462 0.00 0.00 30.84 2.85
2747 4161 6.372659 GCTGGAGAATGTATTTTCACAAGAGA 59.627 38.462 0.00 0.00 30.84 3.10
2748 4162 7.094634 GCTGGAGAATGTATTTTCACAAGAGAA 60.095 37.037 0.00 0.00 30.84 2.87
2750 4164 8.567948 TGGAGAATGTATTTTCACAAGAGAAAC 58.432 33.333 0.00 0.00 37.24 2.78
2752 4166 8.463930 AGAATGTATTTTCACAAGAGAAACCA 57.536 30.769 0.00 0.00 37.24 3.67
2754 4168 7.823745 ATGTATTTTCACAAGAGAAACCAGT 57.176 32.000 0.00 0.00 37.24 4.00
2755 4169 7.026631 TGTATTTTCACAAGAGAAACCAGTG 57.973 36.000 0.00 0.00 37.24 3.66
2756 4170 6.601613 TGTATTTTCACAAGAGAAACCAGTGT 59.398 34.615 0.00 0.00 37.24 3.55
2757 4171 5.975693 TTTTCACAAGAGAAACCAGTGTT 57.024 34.783 0.00 0.00 37.24 3.32
2759 4173 7.455641 TTTTCACAAGAGAAACCAGTGTTTA 57.544 32.000 0.00 0.00 44.57 2.01
2761 4175 7.455641 TTCACAAGAGAAACCAGTGTTTAAA 57.544 32.000 0.00 0.00 44.57 1.52
2762 4176 7.455641 TCACAAGAGAAACCAGTGTTTAAAA 57.544 32.000 0.00 0.00 44.57 1.52
2763 4177 7.887381 TCACAAGAGAAACCAGTGTTTAAAAA 58.113 30.769 0.00 0.00 44.57 1.94
2765 4179 9.796120 CACAAGAGAAACCAGTGTTTAAAAATA 57.204 29.630 0.00 0.00 44.57 1.40
2766 4180 9.797556 ACAAGAGAAACCAGTGTTTAAAAATAC 57.202 29.630 0.00 0.00 44.57 1.89
2768 4182 8.762481 AGAGAAACCAGTGTTTAAAAATACCT 57.238 30.769 0.00 0.00 44.57 3.08
2769 4183 8.630037 AGAGAAACCAGTGTTTAAAAATACCTG 58.370 33.333 0.00 0.00 44.57 4.00
2770 4184 8.528044 AGAAACCAGTGTTTAAAAATACCTGA 57.472 30.769 0.00 0.00 44.57 3.86
2771 4185 9.143155 AGAAACCAGTGTTTAAAAATACCTGAT 57.857 29.630 0.00 0.00 44.57 2.90
2772 4186 9.758651 GAAACCAGTGTTTAAAAATACCTGATT 57.241 29.630 0.00 0.00 44.57 2.57
2815 4229 9.701355 AAAAATCAACTTTTTAACGAAATGCTG 57.299 25.926 0.00 0.00 43.56 4.41
2816 4230 8.641499 AAATCAACTTTTTAACGAAATGCTGA 57.359 26.923 0.00 0.00 34.23 4.26
2817 4231 8.641499 AATCAACTTTTTAACGAAATGCTGAA 57.359 26.923 0.00 0.00 33.76 3.02
2818 4232 8.641499 ATCAACTTTTTAACGAAATGCTGAAA 57.359 26.923 0.00 0.00 33.76 2.69
2819 4233 8.641499 TCAACTTTTTAACGAAATGCTGAAAT 57.359 26.923 0.00 0.00 29.69 2.17
2820 4234 9.737427 TCAACTTTTTAACGAAATGCTGAAATA 57.263 25.926 0.00 0.00 29.69 1.40
2914 4328 6.814644 TCAATGATTGATCATGTTTTGAAGGC 59.185 34.615 3.29 0.00 46.22 4.35
2915 4329 5.075858 TGATTGATCATGTTTTGAAGGCC 57.924 39.130 0.00 0.00 38.03 5.19
2916 4330 4.773674 TGATTGATCATGTTTTGAAGGCCT 59.226 37.500 0.00 0.00 38.03 5.19
2917 4331 5.246656 TGATTGATCATGTTTTGAAGGCCTT 59.753 36.000 20.65 20.65 38.03 4.35
2918 4332 4.524316 TGATCATGTTTTGAAGGCCTTG 57.476 40.909 26.25 6.60 38.03 3.61
2919 4333 3.896888 TGATCATGTTTTGAAGGCCTTGT 59.103 39.130 26.25 0.00 38.03 3.16
2920 4334 4.344679 TGATCATGTTTTGAAGGCCTTGTT 59.655 37.500 26.25 0.00 38.03 2.83
2921 4335 5.538053 TGATCATGTTTTGAAGGCCTTGTTA 59.462 36.000 26.25 6.12 38.03 2.41
2922 4336 5.195001 TCATGTTTTGAAGGCCTTGTTAC 57.805 39.130 26.25 15.31 0.00 2.50
2923 4337 4.038642 TCATGTTTTGAAGGCCTTGTTACC 59.961 41.667 26.25 8.65 0.00 2.85
2924 4338 3.366396 TGTTTTGAAGGCCTTGTTACCA 58.634 40.909 26.25 11.65 0.00 3.25
2925 4339 3.131400 TGTTTTGAAGGCCTTGTTACCAC 59.869 43.478 26.25 12.03 0.00 4.16
2926 4340 2.738587 TTGAAGGCCTTGTTACCACA 57.261 45.000 26.25 9.97 0.00 4.17
2927 4341 2.738587 TGAAGGCCTTGTTACCACAA 57.261 45.000 26.25 0.00 40.82 3.33
2928 4342 3.019799 TGAAGGCCTTGTTACCACAAA 57.980 42.857 26.25 0.00 42.53 2.83
2929 4343 3.571590 TGAAGGCCTTGTTACCACAAAT 58.428 40.909 26.25 0.00 42.53 2.32
2930 4344 3.964031 TGAAGGCCTTGTTACCACAAATT 59.036 39.130 26.25 0.00 42.53 1.82
2931 4345 4.038642 TGAAGGCCTTGTTACCACAAATTC 59.961 41.667 26.25 3.18 42.53 2.17
2932 4346 3.571590 AGGCCTTGTTACCACAAATTCA 58.428 40.909 0.00 0.00 42.53 2.57
2933 4347 3.964031 AGGCCTTGTTACCACAAATTCAA 59.036 39.130 0.00 0.00 42.53 2.69
2934 4348 4.407296 AGGCCTTGTTACCACAAATTCAAA 59.593 37.500 0.00 0.00 42.53 2.69
2935 4349 5.071653 AGGCCTTGTTACCACAAATTCAAAT 59.928 36.000 0.00 0.00 42.53 2.32
2936 4350 6.268847 AGGCCTTGTTACCACAAATTCAAATA 59.731 34.615 0.00 0.00 42.53 1.40
2937 4351 7.038373 AGGCCTTGTTACCACAAATTCAAATAT 60.038 33.333 0.00 0.00 42.53 1.28
2938 4352 8.254508 GGCCTTGTTACCACAAATTCAAATATA 58.745 33.333 0.00 0.00 42.53 0.86
2939 4353 9.816354 GCCTTGTTACCACAAATTCAAATATAT 57.184 29.630 0.00 0.00 42.53 0.86
2966 4380 7.977789 AAAGTTTCAGAAACAAACATTTGGT 57.022 28.000 24.85 0.00 43.79 3.67
3025 4439 9.472361 GAAATAAAATGAATGTCATCATCTGGG 57.528 33.333 0.00 0.00 39.08 4.45
3026 4440 5.864418 AAAATGAATGTCATCATCTGGGG 57.136 39.130 0.00 0.00 39.08 4.96
3027 4441 4.801521 AATGAATGTCATCATCTGGGGA 57.198 40.909 0.00 0.00 39.08 4.81
3028 4442 3.851458 TGAATGTCATCATCTGGGGAG 57.149 47.619 0.00 0.00 32.56 4.30
3029 4443 3.387012 TGAATGTCATCATCTGGGGAGA 58.613 45.455 0.00 0.00 32.56 3.71
3030 4444 3.781965 TGAATGTCATCATCTGGGGAGAA 59.218 43.478 0.00 0.00 32.56 2.87
3031 4445 4.227982 TGAATGTCATCATCTGGGGAGAAA 59.772 41.667 0.00 0.00 32.56 2.52
3032 4446 3.634397 TGTCATCATCTGGGGAGAAAC 57.366 47.619 0.00 0.00 0.00 2.78
3033 4447 2.912295 TGTCATCATCTGGGGAGAAACA 59.088 45.455 0.00 0.00 0.00 2.83
3034 4448 3.274288 GTCATCATCTGGGGAGAAACAC 58.726 50.000 0.00 0.00 0.00 3.32
3035 4449 3.054802 GTCATCATCTGGGGAGAAACACT 60.055 47.826 0.00 0.00 0.00 3.55
3036 4450 3.054875 TCATCATCTGGGGAGAAACACTG 60.055 47.826 0.00 0.00 0.00 3.66
3037 4451 1.003580 TCATCTGGGGAGAAACACTGC 59.996 52.381 0.00 0.00 36.20 4.40
3038 4452 1.067295 ATCTGGGGAGAAACACTGCA 58.933 50.000 0.00 0.00 38.74 4.41
3039 4453 1.067295 TCTGGGGAGAAACACTGCAT 58.933 50.000 0.00 0.00 38.74 3.96
3040 4454 1.171308 CTGGGGAGAAACACTGCATG 58.829 55.000 0.00 0.00 38.74 4.06
3041 4455 0.895100 TGGGGAGAAACACTGCATGC 60.895 55.000 11.82 11.82 38.74 4.06
3042 4456 0.895100 GGGGAGAAACACTGCATGCA 60.895 55.000 21.29 21.29 38.74 3.96
3043 4457 1.180029 GGGAGAAACACTGCATGCAT 58.820 50.000 22.97 5.46 38.74 3.96
3044 4458 1.135199 GGGAGAAACACTGCATGCATG 60.135 52.381 22.97 22.70 38.74 4.06
3054 4468 3.104766 CATGCATGCTCCGGTCAC 58.895 61.111 20.33 0.00 0.00 3.67
3055 4469 2.124570 ATGCATGCTCCGGTCACC 60.125 61.111 20.33 0.00 0.00 4.02
3056 4470 3.704231 ATGCATGCTCCGGTCACCC 62.704 63.158 20.33 0.00 0.00 4.61
3057 4471 4.408821 GCATGCTCCGGTCACCCA 62.409 66.667 11.37 0.00 0.00 4.51
3058 4472 2.591753 CATGCTCCGGTCACCCAT 59.408 61.111 0.00 0.00 0.00 4.00
3059 4473 1.820906 CATGCTCCGGTCACCCATG 60.821 63.158 0.00 4.88 0.00 3.66
3060 4474 3.047807 ATGCTCCGGTCACCCATGG 62.048 63.158 4.14 4.14 0.00 3.66
3061 4475 3.717294 GCTCCGGTCACCCATGGT 61.717 66.667 11.73 0.00 35.62 3.55
3062 4476 2.584608 CTCCGGTCACCCATGGTC 59.415 66.667 11.73 0.00 31.02 4.02
3063 4477 2.203862 TCCGGTCACCCATGGTCA 60.204 61.111 11.73 0.00 31.02 4.02
3064 4478 2.244117 CTCCGGTCACCCATGGTCAG 62.244 65.000 11.73 0.00 31.02 3.51
3065 4479 2.268920 CGGTCACCCATGGTCAGG 59.731 66.667 11.73 0.00 31.02 3.86
3066 4480 2.290287 CGGTCACCCATGGTCAGGA 61.290 63.158 11.73 0.00 31.02 3.86
3067 4481 1.299976 GGTCACCCATGGTCAGGAC 59.700 63.158 11.73 11.71 31.02 3.85
3068 4482 1.079127 GTCACCCATGGTCAGGACG 60.079 63.158 11.73 0.00 31.02 4.79
3069 4483 1.535444 TCACCCATGGTCAGGACGT 60.535 57.895 11.73 0.00 31.02 4.34
3070 4484 0.251877 TCACCCATGGTCAGGACGTA 60.252 55.000 11.73 0.00 31.02 3.57
3071 4485 0.108329 CACCCATGGTCAGGACGTAC 60.108 60.000 11.73 0.00 31.02 3.67
3072 4486 0.252103 ACCCATGGTCAGGACGTACT 60.252 55.000 11.73 0.00 0.00 2.73
3073 4487 0.460311 CCCATGGTCAGGACGTACTC 59.540 60.000 11.73 0.00 0.00 2.59
3074 4488 1.475403 CCATGGTCAGGACGTACTCT 58.525 55.000 0.00 0.00 0.00 3.24
3075 4489 1.405821 CCATGGTCAGGACGTACTCTC 59.594 57.143 0.00 0.00 0.00 3.20
3076 4490 2.370349 CATGGTCAGGACGTACTCTCT 58.630 52.381 0.00 0.00 0.00 3.10
3077 4491 2.110901 TGGTCAGGACGTACTCTCTC 57.889 55.000 0.00 0.00 0.00 3.20
3078 4492 1.629353 TGGTCAGGACGTACTCTCTCT 59.371 52.381 0.00 0.00 0.00 3.10
3079 4493 2.282407 GGTCAGGACGTACTCTCTCTC 58.718 57.143 0.00 0.00 0.00 3.20
3080 4494 2.093341 GGTCAGGACGTACTCTCTCTCT 60.093 54.545 0.00 0.00 0.00 3.10
3081 4495 3.192466 GTCAGGACGTACTCTCTCTCTC 58.808 54.545 0.00 0.00 0.00 3.20
3082 4496 3.101437 TCAGGACGTACTCTCTCTCTCT 58.899 50.000 0.00 0.00 0.00 3.10
3083 4497 3.131577 TCAGGACGTACTCTCTCTCTCTC 59.868 52.174 0.00 0.00 0.00 3.20
3084 4498 3.132289 CAGGACGTACTCTCTCTCTCTCT 59.868 52.174 0.00 0.00 0.00 3.10
3085 4499 3.383825 AGGACGTACTCTCTCTCTCTCTC 59.616 52.174 0.00 0.00 0.00 3.20
3086 4500 3.383825 GGACGTACTCTCTCTCTCTCTCT 59.616 52.174 0.00 0.00 0.00 3.10
3087 4501 4.499357 GGACGTACTCTCTCTCTCTCTCTC 60.499 54.167 0.00 0.00 0.00 3.20
3088 4502 4.279145 ACGTACTCTCTCTCTCTCTCTCT 58.721 47.826 0.00 0.00 0.00 3.10
3089 4503 4.338682 ACGTACTCTCTCTCTCTCTCTCTC 59.661 50.000 0.00 0.00 0.00 3.20
3090 4504 4.580995 CGTACTCTCTCTCTCTCTCTCTCT 59.419 50.000 0.00 0.00 0.00 3.10
3091 4505 5.278071 CGTACTCTCTCTCTCTCTCTCTCTC 60.278 52.000 0.00 0.00 0.00 3.20
3092 4506 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
3093 4507 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
3094 4508 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3095 4509 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3096 4510 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3097 4511 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3098 4512 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3099 4513 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3100 4514 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3101 4515 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3102 4516 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3103 4517 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3104 4518 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3105 4519 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3106 4520 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3107 4521 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
3108 4522 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
3109 4523 5.523588 TCTCTCTCTCTCTCTCTCTCTTCT 58.476 45.833 0.00 0.00 0.00 2.85
3110 4524 5.362143 TCTCTCTCTCTCTCTCTCTCTTCTG 59.638 48.000 0.00 0.00 0.00 3.02
3111 4525 4.125703 CTCTCTCTCTCTCTCTCTTCTGC 58.874 52.174 0.00 0.00 0.00 4.26
3112 4526 3.118261 TCTCTCTCTCTCTCTCTTCTGCC 60.118 52.174 0.00 0.00 0.00 4.85
3113 4527 2.575735 TCTCTCTCTCTCTCTTCTGCCA 59.424 50.000 0.00 0.00 0.00 4.92
3114 4528 3.010027 TCTCTCTCTCTCTCTTCTGCCAA 59.990 47.826 0.00 0.00 0.00 4.52
3115 4529 3.763360 CTCTCTCTCTCTCTTCTGCCAAA 59.237 47.826 0.00 0.00 0.00 3.28
3116 4530 4.155709 TCTCTCTCTCTCTTCTGCCAAAA 58.844 43.478 0.00 0.00 0.00 2.44
3117 4531 4.220382 TCTCTCTCTCTCTTCTGCCAAAAG 59.780 45.833 0.00 0.00 0.00 2.27
3118 4532 3.260380 TCTCTCTCTCTTCTGCCAAAAGG 59.740 47.826 0.00 0.00 0.00 3.11
3119 4533 2.083002 CTCTCTCTTCTGCCAAAAGGC 58.917 52.381 0.00 0.00 0.00 4.35
3120 4534 1.701847 TCTCTCTTCTGCCAAAAGGCT 59.298 47.619 8.11 0.00 35.66 4.58
3121 4535 1.811359 CTCTCTTCTGCCAAAAGGCTG 59.189 52.381 8.11 7.53 35.66 4.85
3122 4536 1.421268 TCTCTTCTGCCAAAAGGCTGA 59.579 47.619 11.36 11.36 40.18 4.26
3123 4537 1.538950 CTCTTCTGCCAAAAGGCTGAC 59.461 52.381 14.44 0.00 41.25 3.51
3124 4538 1.133823 TCTTCTGCCAAAAGGCTGACA 60.134 47.619 14.44 3.49 41.25 3.58
3125 4539 1.891150 CTTCTGCCAAAAGGCTGACAT 59.109 47.619 14.44 0.00 41.25 3.06
3126 4540 1.250328 TCTGCCAAAAGGCTGACATG 58.750 50.000 11.36 0.00 37.79 3.21
3127 4541 0.245539 CTGCCAAAAGGCTGACATGG 59.754 55.000 8.11 0.00 36.20 3.66
3128 4542 0.469705 TGCCAAAAGGCTGACATGGT 60.470 50.000 8.11 0.00 33.63 3.55
3129 4543 0.681175 GCCAAAAGGCTGACATGGTT 59.319 50.000 0.00 0.00 33.63 3.67
3130 4544 1.892474 GCCAAAAGGCTGACATGGTTA 59.108 47.619 0.00 0.00 33.63 2.85
3131 4545 2.094545 GCCAAAAGGCTGACATGGTTAG 60.095 50.000 0.00 0.00 33.63 2.34
3132 4546 2.493278 CCAAAAGGCTGACATGGTTAGG 59.507 50.000 0.00 0.00 0.00 2.69
3133 4547 3.420893 CAAAAGGCTGACATGGTTAGGA 58.579 45.455 0.00 0.00 0.00 2.94
3134 4548 4.019174 CAAAAGGCTGACATGGTTAGGAT 58.981 43.478 0.00 0.00 0.00 3.24
3135 4549 3.287867 AAGGCTGACATGGTTAGGATG 57.712 47.619 0.00 0.00 0.00 3.51
3136 4550 2.200081 AGGCTGACATGGTTAGGATGT 58.800 47.619 0.00 0.00 36.73 3.06
3137 4551 3.384168 AGGCTGACATGGTTAGGATGTA 58.616 45.455 0.00 0.00 34.10 2.29
3138 4552 3.976654 AGGCTGACATGGTTAGGATGTAT 59.023 43.478 0.00 0.00 34.10 2.29
3139 4553 4.413520 AGGCTGACATGGTTAGGATGTATT 59.586 41.667 0.00 0.00 34.10 1.89
3140 4554 4.757149 GGCTGACATGGTTAGGATGTATTC 59.243 45.833 0.00 0.00 34.10 1.75
3141 4555 5.455326 GGCTGACATGGTTAGGATGTATTCT 60.455 44.000 0.00 0.00 34.10 2.40
3142 4556 5.698545 GCTGACATGGTTAGGATGTATTCTC 59.301 44.000 0.00 0.00 34.10 2.87
3143 4557 6.686378 GCTGACATGGTTAGGATGTATTCTCA 60.686 42.308 0.00 0.00 34.10 3.27
3144 4558 7.194112 TGACATGGTTAGGATGTATTCTCAA 57.806 36.000 0.00 0.00 34.10 3.02
3145 4559 7.275183 TGACATGGTTAGGATGTATTCTCAAG 58.725 38.462 0.00 0.00 34.10 3.02
3146 4560 7.092891 TGACATGGTTAGGATGTATTCTCAAGT 60.093 37.037 0.00 0.00 34.10 3.16
3147 4561 8.319057 ACATGGTTAGGATGTATTCTCAAGTA 57.681 34.615 0.00 0.00 32.12 2.24
3148 4562 8.938883 ACATGGTTAGGATGTATTCTCAAGTAT 58.061 33.333 0.00 0.00 32.12 2.12
3149 4563 9.784531 CATGGTTAGGATGTATTCTCAAGTATT 57.215 33.333 0.00 0.00 0.00 1.89
3190 4604 8.833231 TCTCATGTTTATACCTAAATAGCTGC 57.167 34.615 0.00 0.00 0.00 5.25
3191 4605 8.428852 TCTCATGTTTATACCTAAATAGCTGCA 58.571 33.333 1.02 0.00 0.00 4.41
3192 4606 8.378172 TCATGTTTATACCTAAATAGCTGCAC 57.622 34.615 1.02 0.00 0.00 4.57
3193 4607 7.444183 TCATGTTTATACCTAAATAGCTGCACC 59.556 37.037 1.02 0.00 0.00 5.01
3194 4608 6.654959 TGTTTATACCTAAATAGCTGCACCA 58.345 36.000 1.02 0.00 0.00 4.17
3195 4609 7.113437 TGTTTATACCTAAATAGCTGCACCAA 58.887 34.615 1.02 0.00 0.00 3.67
3196 4610 7.777910 TGTTTATACCTAAATAGCTGCACCAAT 59.222 33.333 1.02 0.00 0.00 3.16
3197 4611 7.979444 TTATACCTAAATAGCTGCACCAATC 57.021 36.000 1.02 0.00 0.00 2.67
3198 4612 4.510167 ACCTAAATAGCTGCACCAATCT 57.490 40.909 1.02 0.00 0.00 2.40
3199 4613 4.860022 ACCTAAATAGCTGCACCAATCTT 58.140 39.130 1.02 0.00 0.00 2.40
3200 4614 4.641989 ACCTAAATAGCTGCACCAATCTTG 59.358 41.667 1.02 0.00 0.00 3.02
3201 4615 4.883585 CCTAAATAGCTGCACCAATCTTGA 59.116 41.667 1.02 0.00 0.00 3.02
3202 4616 5.533903 CCTAAATAGCTGCACCAATCTTGAT 59.466 40.000 1.02 0.00 0.00 2.57
3203 4617 4.913335 AATAGCTGCACCAATCTTGATG 57.087 40.909 1.02 0.00 0.00 3.07
3204 4618 2.502142 AGCTGCACCAATCTTGATGA 57.498 45.000 1.02 0.00 0.00 2.92
3205 4619 2.799017 AGCTGCACCAATCTTGATGAA 58.201 42.857 1.02 0.00 0.00 2.57
3206 4620 3.362706 AGCTGCACCAATCTTGATGAAT 58.637 40.909 1.02 0.00 0.00 2.57
3207 4621 3.767673 AGCTGCACCAATCTTGATGAATT 59.232 39.130 1.02 0.00 0.00 2.17
3208 4622 4.222145 AGCTGCACCAATCTTGATGAATTT 59.778 37.500 1.02 0.00 0.00 1.82
3209 4623 5.419788 AGCTGCACCAATCTTGATGAATTTA 59.580 36.000 1.02 0.00 0.00 1.40
3210 4624 6.071221 AGCTGCACCAATCTTGATGAATTTAA 60.071 34.615 1.02 0.00 0.00 1.52
3211 4625 6.759827 GCTGCACCAATCTTGATGAATTTAAT 59.240 34.615 0.00 0.00 0.00 1.40
3212 4626 7.254319 GCTGCACCAATCTTGATGAATTTAATG 60.254 37.037 0.00 0.00 0.00 1.90
3213 4627 7.042950 TGCACCAATCTTGATGAATTTAATGG 58.957 34.615 0.00 0.00 0.00 3.16
3214 4628 7.093421 TGCACCAATCTTGATGAATTTAATGGA 60.093 33.333 0.00 0.00 0.00 3.41
3215 4629 7.929785 GCACCAATCTTGATGAATTTAATGGAT 59.070 33.333 0.00 0.00 0.00 3.41
3216 4630 9.256477 CACCAATCTTGATGAATTTAATGGATG 57.744 33.333 0.00 0.00 0.00 3.51
3217 4631 8.426489 ACCAATCTTGATGAATTTAATGGATGG 58.574 33.333 0.00 0.00 0.00 3.51
3218 4632 8.644216 CCAATCTTGATGAATTTAATGGATGGA 58.356 33.333 0.00 0.00 0.00 3.41
3222 4636 9.204337 TCTTGATGAATTTAATGGATGGATTGT 57.796 29.630 0.00 0.00 0.00 2.71
3223 4637 9.472361 CTTGATGAATTTAATGGATGGATTGTC 57.528 33.333 0.00 0.00 0.00 3.18
3224 4638 7.954835 TGATGAATTTAATGGATGGATTGTCC 58.045 34.615 0.00 0.00 36.96 4.02
3235 4649 3.035055 TGGATTGTCCATCGGTAGGTA 57.965 47.619 0.00 0.00 42.67 3.08
3237 4651 2.036862 GGATTGTCCATCGGTAGGTACC 59.963 54.545 2.73 2.73 38.57 3.34
3243 4657 1.893801 CCATCGGTAGGTACCATCTCC 59.106 57.143 15.94 9.38 46.80 3.71
3245 4659 2.359981 TCGGTAGGTACCATCTCCAG 57.640 55.000 15.94 7.26 46.80 3.86
3250 4664 5.073554 TCGGTAGGTACCATCTCCAGTAATA 59.926 44.000 15.94 0.00 46.80 0.98
3252 4666 7.037370 TCGGTAGGTACCATCTCCAGTAATATA 60.037 40.741 15.94 0.00 46.80 0.86
3253 4667 7.066766 CGGTAGGTACCATCTCCAGTAATATAC 59.933 44.444 15.94 2.27 46.80 1.47
3254 4668 8.114743 GGTAGGTACCATCTCCAGTAATATACT 58.885 40.741 15.94 0.00 45.73 2.12
3255 4669 9.531158 GTAGGTACCATCTCCAGTAATATACTT 57.469 37.037 15.94 0.00 36.76 2.24
3257 4671 9.531158 AGGTACCATCTCCAGTAATATACTTAC 57.469 37.037 15.94 0.00 36.76 2.34
3266 4680 8.503458 TCCAGTAATATACTTACTAGATCGGC 57.497 38.462 0.00 0.00 36.76 5.54
3268 4682 8.737175 CCAGTAATATACTTACTAGATCGGCAA 58.263 37.037 0.00 0.00 36.76 4.52
3269 4683 9.557338 CAGTAATATACTTACTAGATCGGCAAC 57.443 37.037 0.00 0.00 36.76 4.17
3299 4713 2.582978 GAGGGTGCCGGTCCTAAC 59.417 66.667 15.33 2.15 32.74 2.34
3300 4714 3.366739 GAGGGTGCCGGTCCTAACG 62.367 68.421 15.33 0.00 32.74 3.18
3301 4715 3.384532 GGGTGCCGGTCCTAACGA 61.385 66.667 15.33 0.00 0.00 3.85
3302 4716 2.728435 GGGTGCCGGTCCTAACGAT 61.728 63.158 15.33 0.00 0.00 3.73
3304 4718 0.677842 GGTGCCGGTCCTAACGATAT 59.322 55.000 1.90 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 200 6.430925 CACACATTAAAACCAGATTGAGAGGA 59.569 38.462 0.00 0.00 0.00 3.71
477 503 7.966204 CCGTCCATATTTTAAGTCAAACGAATT 59.034 33.333 0.00 0.00 0.00 2.17
491 517 1.099689 CAACCCGCCGTCCATATTTT 58.900 50.000 0.00 0.00 0.00 1.82
733 764 3.079960 TCTATCGATCTTTGGCGTGAC 57.920 47.619 0.00 0.00 0.00 3.67
740 771 5.150683 GTCTCGTCCATCTATCGATCTTTG 58.849 45.833 0.00 0.00 33.26 2.77
903 934 1.077089 GGCTAGCAACGACGAAGGAC 61.077 60.000 18.24 0.00 0.00 3.85
919 950 3.164479 CCCCATGATCATCCGGCT 58.836 61.111 4.86 0.00 0.00 5.52
1003 1046 1.306296 GCAAACATGGGCTCCCCTA 59.694 57.895 1.89 0.00 45.70 3.53
1074 1123 2.926420 CGGCGTTGGGGAAAAAGGG 61.926 63.158 0.00 0.00 0.00 3.95
1148 1197 3.003173 CCCTGGGAGAGGCGAACA 61.003 66.667 7.01 0.00 41.19 3.18
1206 1255 1.661480 GCAGATTGCACACAGCCAA 59.339 52.632 0.00 0.00 44.26 4.52
1232 1281 0.465460 GGGGAAGCACTTCACACACA 60.465 55.000 14.28 0.00 44.51 3.72
1383 1438 2.177580 GCGGGCCGAATTTCATCGA 61.178 57.895 33.44 0.00 45.48 3.59
1728 1786 2.935201 CTCGCTCTTTCTTCCATCTTGG 59.065 50.000 0.00 0.00 39.43 3.61
1787 1845 4.906618 AGGTGGTTTCAACTCGATAATGT 58.093 39.130 0.00 0.00 35.76 2.71
2059 2117 6.922957 ACATTAGGCAAAACAAGTAACATGTG 59.077 34.615 0.00 0.00 0.00 3.21
2060 2118 6.922957 CACATTAGGCAAAACAAGTAACATGT 59.077 34.615 0.00 0.00 0.00 3.21
2061 2119 7.144661 TCACATTAGGCAAAACAAGTAACATG 58.855 34.615 0.00 0.00 0.00 3.21
2062 2120 7.283625 TCACATTAGGCAAAACAAGTAACAT 57.716 32.000 0.00 0.00 0.00 2.71
2064 2122 7.367285 TGATCACATTAGGCAAAACAAGTAAC 58.633 34.615 0.00 0.00 0.00 2.50
2065 2123 7.517614 TGATCACATTAGGCAAAACAAGTAA 57.482 32.000 0.00 0.00 0.00 2.24
2066 2124 7.392953 TGATGATCACATTAGGCAAAACAAGTA 59.607 33.333 0.00 0.00 36.82 2.24
2067 2125 6.209192 TGATGATCACATTAGGCAAAACAAGT 59.791 34.615 0.00 0.00 36.82 3.16
2068 2126 6.623486 TGATGATCACATTAGGCAAAACAAG 58.377 36.000 0.00 0.00 36.82 3.16
2069 2127 6.587206 TGATGATCACATTAGGCAAAACAA 57.413 33.333 0.00 0.00 36.82 2.83
2070 2128 6.604396 AGATGATGATCACATTAGGCAAAACA 59.396 34.615 0.00 0.00 36.82 2.83
2071 2129 7.035840 AGATGATGATCACATTAGGCAAAAC 57.964 36.000 0.00 0.00 36.82 2.43
2072 2130 7.649533 AAGATGATGATCACATTAGGCAAAA 57.350 32.000 0.00 0.00 36.82 2.44
2073 2131 7.649533 AAAGATGATGATCACATTAGGCAAA 57.350 32.000 0.00 0.00 36.82 3.68
2074 2132 8.750515 TTAAAGATGATGATCACATTAGGCAA 57.249 30.769 0.00 0.00 36.82 4.52
2075 2133 7.994911 ACTTAAAGATGATGATCACATTAGGCA 59.005 33.333 0.00 0.00 36.82 4.75
2081 2139 9.671279 TGTGTTACTTAAAGATGATGATCACAT 57.329 29.630 0.00 3.92 39.67 3.21
2082 2140 9.671279 ATGTGTTACTTAAAGATGATGATCACA 57.329 29.630 0.00 0.00 34.86 3.58
2083 2141 9.926751 CATGTGTTACTTAAAGATGATGATCAC 57.073 33.333 0.00 0.00 0.00 3.06
2084 2142 9.671279 ACATGTGTTACTTAAAGATGATGATCA 57.329 29.630 0.00 0.00 0.00 2.92
2103 2161 6.536582 GCTGAGATATGACAAGTAACATGTGT 59.463 38.462 0.00 0.00 0.00 3.72
2104 2162 6.292008 CGCTGAGATATGACAAGTAACATGTG 60.292 42.308 0.00 0.00 0.00 3.21
2105 2163 5.750547 CGCTGAGATATGACAAGTAACATGT 59.249 40.000 0.00 0.00 0.00 3.21
2106 2164 5.979517 TCGCTGAGATATGACAAGTAACATG 59.020 40.000 0.00 0.00 0.00 3.21
2107 2165 6.149129 TCGCTGAGATATGACAAGTAACAT 57.851 37.500 0.00 0.00 0.00 2.71
2109 2167 5.403766 CCATCGCTGAGATATGACAAGTAAC 59.596 44.000 0.00 0.00 37.52 2.50
2111 2169 4.021981 CCCATCGCTGAGATATGACAAGTA 60.022 45.833 0.00 0.00 37.52 2.24
2112 2170 3.244009 CCCATCGCTGAGATATGACAAGT 60.244 47.826 0.00 0.00 37.52 3.16
2123 2182 0.107508 ACAATCCACCCATCGCTGAG 60.108 55.000 0.00 0.00 0.00 3.35
2161 2226 7.759433 ACATTAGGCAAAACAAGTAACATATGC 59.241 33.333 1.58 0.00 0.00 3.14
2163 2228 9.019656 TCACATTAGGCAAAACAAGTAACATAT 57.980 29.630 0.00 0.00 0.00 1.78
2164 2229 8.397575 TCACATTAGGCAAAACAAGTAACATA 57.602 30.769 0.00 0.00 0.00 2.29
2226 2293 4.559862 TCAAAGCTTCTCCCCTTAAGAG 57.440 45.455 3.36 0.00 0.00 2.85
2227 2294 6.443849 TCTTATCAAAGCTTCTCCCCTTAAGA 59.556 38.462 3.36 4.04 32.36 2.10
2228 2295 6.653989 TCTTATCAAAGCTTCTCCCCTTAAG 58.346 40.000 0.00 0.00 32.36 1.85
2239 2306 9.933723 AACTTTGCAAATATCTTATCAAAGCTT 57.066 25.926 13.23 0.00 42.19 3.74
2311 2380 5.700832 CCTCCGTGTAACATATATGCACAAT 59.299 40.000 17.73 0.00 35.74 2.71
2320 2390 9.403583 ACATTTTTATTCCTCCGTGTAACATAT 57.596 29.630 0.00 0.00 35.74 1.78
2322 2392 7.696992 ACATTTTTATTCCTCCGTGTAACAT 57.303 32.000 0.00 0.00 35.74 2.71
2326 2396 6.128117 GCTCAACATTTTTATTCCTCCGTGTA 60.128 38.462 0.00 0.00 0.00 2.90
2331 2401 8.552083 AATTTGCTCAACATTTTTATTCCTCC 57.448 30.769 0.00 0.00 0.00 4.30
2351 2422 3.976942 CCTTGCTTTCACGTGAGAATTTG 59.023 43.478 19.11 9.14 0.00 2.32
2362 2433 4.305989 TCACACAAATCCTTGCTTTCAC 57.694 40.909 0.00 0.00 35.84 3.18
2377 2449 6.759272 AGTCTATCTTGTTTAGCTTCACACA 58.241 36.000 0.00 0.00 0.00 3.72
2378 2450 7.513968 CAAGTCTATCTTGTTTAGCTTCACAC 58.486 38.462 0.00 0.00 45.89 3.82
2416 2501 3.616076 CACGCCCTTGGCATGAAATTAAA 60.616 43.478 5.87 0.00 45.44 1.52
2419 2504 0.247185 CACGCCCTTGGCATGAAATT 59.753 50.000 5.87 0.00 45.44 1.82
2420 2505 1.892338 CACGCCCTTGGCATGAAAT 59.108 52.632 5.87 0.00 45.44 2.17
2470 2555 4.083537 TCACACGGTAGCATTGTGAAATTC 60.084 41.667 19.02 0.00 45.10 2.17
2473 2558 2.839975 TCACACGGTAGCATTGTGAAA 58.160 42.857 19.02 3.40 45.10 2.69
2475 2560 1.790755 GTCACACGGTAGCATTGTGA 58.209 50.000 17.93 17.93 45.71 3.58
2488 2616 0.712222 GTTAGTTAGCGCCGTCACAC 59.288 55.000 2.29 0.00 0.00 3.82
2499 2627 3.760684 AGTAGTGACACGGGGTTAGTTAG 59.239 47.826 0.00 0.00 0.00 2.34
2512 2640 2.820197 AGATGAGAACGCAGTAGTGACA 59.180 45.455 0.42 0.00 45.00 3.58
2523 2651 2.029020 TCTGGGTCACAAGATGAGAACG 60.029 50.000 0.00 0.00 38.28 3.95
2533 3056 1.217916 TTGTTCCCTCTGGGTCACAA 58.782 50.000 14.63 14.63 44.74 3.33
2590 3113 1.112315 AAACATCCAAAGCACCGCCA 61.112 50.000 0.00 0.00 0.00 5.69
2659 3182 7.079475 GCGCCACTTAATAAAAGTTAGTTCAA 58.921 34.615 0.00 0.00 0.00 2.69
2676 3199 0.749454 GATGAGGAATGGCGCCACTT 60.749 55.000 35.50 25.90 0.00 3.16
2684 3834 4.562347 CCTTATGGTCTCGATGAGGAATGG 60.562 50.000 0.00 0.00 29.81 3.16
2698 3848 4.760204 AGTTTACAGTGTTGCCTTATGGTC 59.240 41.667 0.00 0.00 35.27 4.02
2704 3854 2.358898 CAGCAGTTTACAGTGTTGCCTT 59.641 45.455 12.87 0.00 35.44 4.35
2712 3862 4.357918 ACATTCTCCAGCAGTTTACAGT 57.642 40.909 0.00 0.00 0.00 3.55
2723 3873 7.912056 TCTCTTGTGAAAATACATTCTCCAG 57.088 36.000 0.00 0.00 0.00 3.86
2745 4159 8.528044 TCAGGTATTTTTAAACACTGGTTTCT 57.472 30.769 0.00 0.00 43.60 2.52
2746 4160 9.758651 AATCAGGTATTTTTAAACACTGGTTTC 57.241 29.630 0.00 0.00 43.60 2.78
2790 4204 9.092876 TCAGCATTTCGTTAAAAAGTTGATTTT 57.907 25.926 0.00 0.00 43.04 1.82
2794 4208 8.641499 ATTTCAGCATTTCGTTAAAAAGTTGA 57.359 26.923 0.00 0.00 35.08 3.18
2889 4303 6.814644 GCCTTCAAAACATGATCAATCATTGA 59.185 34.615 1.59 1.59 44.70 2.57
2890 4304 6.036735 GGCCTTCAAAACATGATCAATCATTG 59.963 38.462 0.00 4.02 44.70 2.82
2891 4305 6.070424 AGGCCTTCAAAACATGATCAATCATT 60.070 34.615 0.00 0.00 44.70 2.57
2893 4307 4.773674 AGGCCTTCAAAACATGATCAATCA 59.226 37.500 0.00 0.00 41.70 2.57
2894 4308 5.334724 AGGCCTTCAAAACATGATCAATC 57.665 39.130 0.00 0.00 38.03 2.67
2895 4309 5.012354 ACAAGGCCTTCAAAACATGATCAAT 59.988 36.000 17.29 0.00 38.03 2.57
2896 4310 4.344679 ACAAGGCCTTCAAAACATGATCAA 59.655 37.500 17.29 0.00 38.03 2.57
2897 4311 3.896888 ACAAGGCCTTCAAAACATGATCA 59.103 39.130 17.29 0.00 38.03 2.92
2898 4312 4.525912 ACAAGGCCTTCAAAACATGATC 57.474 40.909 17.29 0.00 38.03 2.92
2899 4313 4.961438 AACAAGGCCTTCAAAACATGAT 57.039 36.364 17.29 0.00 38.03 2.45
2900 4314 4.038642 GGTAACAAGGCCTTCAAAACATGA 59.961 41.667 17.29 0.00 35.85 3.07
2901 4315 4.306600 GGTAACAAGGCCTTCAAAACATG 58.693 43.478 17.29 4.95 0.00 3.21
2902 4316 4.600692 GGTAACAAGGCCTTCAAAACAT 57.399 40.909 17.29 0.00 0.00 2.71
2940 4354 8.845227 ACCAAATGTTTGTTTCTGAAACTTTTT 58.155 25.926 27.75 17.95 41.90 1.94
2941 4355 8.389779 ACCAAATGTTTGTTTCTGAAACTTTT 57.610 26.923 27.75 17.70 41.90 2.27
2942 4356 7.977789 ACCAAATGTTTGTTTCTGAAACTTT 57.022 28.000 27.75 18.51 41.90 2.66
2943 4357 7.659390 TGAACCAAATGTTTGTTTCTGAAACTT 59.341 29.630 27.75 14.50 39.43 2.66
2944 4358 7.158021 TGAACCAAATGTTTGTTTCTGAAACT 58.842 30.769 27.75 9.84 39.43 2.66
2945 4359 7.357951 TGAACCAAATGTTTGTTTCTGAAAC 57.642 32.000 22.94 22.94 39.43 2.78
2946 4360 7.969536 TTGAACCAAATGTTTGTTTCTGAAA 57.030 28.000 14.18 0.00 39.43 2.69
2947 4361 7.969536 TTTGAACCAAATGTTTGTTTCTGAA 57.030 28.000 14.18 8.30 39.43 3.02
2948 4362 7.969536 TTTTGAACCAAATGTTTGTTTCTGA 57.030 28.000 14.18 3.95 39.43 3.27
2999 4413 9.472361 CCCAGATGATGACATTCATTTTATTTC 57.528 33.333 0.00 0.00 37.20 2.17
3000 4414 8.426489 CCCCAGATGATGACATTCATTTTATTT 58.574 33.333 0.00 0.00 37.20 1.40
3001 4415 7.785985 TCCCCAGATGATGACATTCATTTTATT 59.214 33.333 0.00 0.00 37.20 1.40
3002 4416 7.299896 TCCCCAGATGATGACATTCATTTTAT 58.700 34.615 0.00 0.00 37.20 1.40
3003 4417 6.671605 TCCCCAGATGATGACATTCATTTTA 58.328 36.000 0.00 0.00 37.20 1.52
3004 4418 5.521696 TCCCCAGATGATGACATTCATTTT 58.478 37.500 0.00 0.00 37.20 1.82
3005 4419 5.103813 TCTCCCCAGATGATGACATTCATTT 60.104 40.000 0.00 0.00 37.20 2.32
3006 4420 4.414514 TCTCCCCAGATGATGACATTCATT 59.585 41.667 0.00 0.00 37.20 2.57
3007 4421 3.978672 TCTCCCCAGATGATGACATTCAT 59.021 43.478 0.00 0.00 40.34 2.57
3008 4422 3.387012 TCTCCCCAGATGATGACATTCA 58.613 45.455 0.00 0.00 36.82 2.57
3009 4423 4.428294 TTCTCCCCAGATGATGACATTC 57.572 45.455 0.00 0.00 36.82 2.67
3010 4424 4.018141 TGTTTCTCCCCAGATGATGACATT 60.018 41.667 0.00 0.00 36.82 2.71
3011 4425 3.524789 TGTTTCTCCCCAGATGATGACAT 59.475 43.478 0.00 0.00 39.67 3.06
3012 4426 2.912295 TGTTTCTCCCCAGATGATGACA 59.088 45.455 0.00 0.00 0.00 3.58
3013 4427 3.054802 AGTGTTTCTCCCCAGATGATGAC 60.055 47.826 0.00 0.00 0.00 3.06
3014 4428 3.054875 CAGTGTTTCTCCCCAGATGATGA 60.055 47.826 0.00 0.00 0.00 2.92
3015 4429 3.276857 CAGTGTTTCTCCCCAGATGATG 58.723 50.000 0.00 0.00 0.00 3.07
3016 4430 2.356535 GCAGTGTTTCTCCCCAGATGAT 60.357 50.000 0.00 0.00 0.00 2.45
3017 4431 1.003580 GCAGTGTTTCTCCCCAGATGA 59.996 52.381 0.00 0.00 0.00 2.92
3018 4432 1.271543 TGCAGTGTTTCTCCCCAGATG 60.272 52.381 0.00 0.00 0.00 2.90
3019 4433 1.067295 TGCAGTGTTTCTCCCCAGAT 58.933 50.000 0.00 0.00 0.00 2.90
3020 4434 1.067295 ATGCAGTGTTTCTCCCCAGA 58.933 50.000 0.00 0.00 0.00 3.86
3021 4435 1.171308 CATGCAGTGTTTCTCCCCAG 58.829 55.000 0.00 0.00 0.00 4.45
3022 4436 0.895100 GCATGCAGTGTTTCTCCCCA 60.895 55.000 14.21 0.00 0.00 4.96
3023 4437 0.895100 TGCATGCAGTGTTTCTCCCC 60.895 55.000 18.46 0.00 0.00 4.81
3024 4438 1.135199 CATGCATGCAGTGTTTCTCCC 60.135 52.381 26.69 0.00 0.00 4.30
3025 4439 2.273370 CATGCATGCAGTGTTTCTCC 57.727 50.000 26.69 0.00 0.00 3.71
3037 4451 2.475466 GGTGACCGGAGCATGCATG 61.475 63.158 22.70 22.70 0.00 4.06
3038 4452 2.124570 GGTGACCGGAGCATGCAT 60.125 61.111 21.98 4.75 0.00 3.96
3039 4453 4.408821 GGGTGACCGGAGCATGCA 62.409 66.667 21.98 0.00 43.64 3.96
3050 4464 1.079127 CGTCCTGACCATGGGTGAC 60.079 63.158 18.09 14.65 35.25 3.67
3051 4465 0.251877 TACGTCCTGACCATGGGTGA 60.252 55.000 18.09 3.62 35.25 4.02
3052 4466 0.108329 GTACGTCCTGACCATGGGTG 60.108 60.000 18.09 5.30 35.25 4.61
3053 4467 0.252103 AGTACGTCCTGACCATGGGT 60.252 55.000 18.09 4.67 39.44 4.51
3054 4468 0.460311 GAGTACGTCCTGACCATGGG 59.540 60.000 18.09 0.00 0.00 4.00
3055 4469 1.405821 GAGAGTACGTCCTGACCATGG 59.594 57.143 11.19 11.19 0.00 3.66
3056 4470 2.356382 GAGAGAGTACGTCCTGACCATG 59.644 54.545 0.00 0.00 0.00 3.66
3057 4471 2.240160 AGAGAGAGTACGTCCTGACCAT 59.760 50.000 0.00 0.00 0.00 3.55
3058 4472 1.629353 AGAGAGAGTACGTCCTGACCA 59.371 52.381 0.00 0.00 0.00 4.02
3059 4473 2.093341 AGAGAGAGAGTACGTCCTGACC 60.093 54.545 0.00 0.00 0.00 4.02
3060 4474 3.118884 AGAGAGAGAGAGTACGTCCTGAC 60.119 52.174 0.00 0.00 0.00 3.51
3061 4475 3.101437 AGAGAGAGAGAGTACGTCCTGA 58.899 50.000 0.00 0.00 0.00 3.86
3062 4476 3.132289 AGAGAGAGAGAGAGTACGTCCTG 59.868 52.174 0.00 0.00 0.00 3.86
3063 4477 3.371965 AGAGAGAGAGAGAGTACGTCCT 58.628 50.000 0.00 0.00 0.00 3.85
3064 4478 3.383825 AGAGAGAGAGAGAGAGTACGTCC 59.616 52.174 0.00 0.00 0.00 4.79
3065 4479 4.338682 AGAGAGAGAGAGAGAGAGTACGTC 59.661 50.000 0.00 0.00 0.00 4.34
3066 4480 4.279145 AGAGAGAGAGAGAGAGAGTACGT 58.721 47.826 0.00 0.00 0.00 3.57
3067 4481 4.580995 AGAGAGAGAGAGAGAGAGAGTACG 59.419 50.000 0.00 0.00 0.00 3.67
3068 4482 5.830991 AGAGAGAGAGAGAGAGAGAGAGTAC 59.169 48.000 0.00 0.00 0.00 2.73
3069 4483 6.019656 AGAGAGAGAGAGAGAGAGAGAGTA 57.980 45.833 0.00 0.00 0.00 2.59
3070 4484 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
3071 4485 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3072 4486 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3073 4487 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3074 4488 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3075 4489 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3076 4490 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3077 4491 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3078 4492 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3079 4493 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3080 4494 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3081 4495 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3082 4496 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3083 4497 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3084 4498 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3085 4499 5.598005 AGAAGAGAGAGAGAGAGAGAGAGAG 59.402 48.000 0.00 0.00 0.00 3.20
3086 4500 5.362143 CAGAAGAGAGAGAGAGAGAGAGAGA 59.638 48.000 0.00 0.00 0.00 3.10
3087 4501 5.599732 CAGAAGAGAGAGAGAGAGAGAGAG 58.400 50.000 0.00 0.00 0.00 3.20
3088 4502 4.141846 GCAGAAGAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
3089 4503 4.125703 GCAGAAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
3090 4504 3.118261 GGCAGAAGAGAGAGAGAGAGAGA 60.118 52.174 0.00 0.00 0.00 3.10
3091 4505 3.209410 GGCAGAAGAGAGAGAGAGAGAG 58.791 54.545 0.00 0.00 0.00 3.20
3092 4506 2.575735 TGGCAGAAGAGAGAGAGAGAGA 59.424 50.000 0.00 0.00 0.00 3.10
3093 4507 3.003394 TGGCAGAAGAGAGAGAGAGAG 57.997 52.381 0.00 0.00 0.00 3.20
3094 4508 3.448093 TTGGCAGAAGAGAGAGAGAGA 57.552 47.619 0.00 0.00 0.00 3.10
3095 4509 4.497300 CTTTTGGCAGAAGAGAGAGAGAG 58.503 47.826 12.12 0.00 0.00 3.20
3096 4510 3.260380 CCTTTTGGCAGAAGAGAGAGAGA 59.740 47.826 18.49 0.00 0.00 3.10
3097 4511 3.598299 CCTTTTGGCAGAAGAGAGAGAG 58.402 50.000 18.49 0.00 0.00 3.20
3098 4512 3.692257 CCTTTTGGCAGAAGAGAGAGA 57.308 47.619 18.49 0.00 0.00 3.10
3111 4525 2.493278 CCTAACCATGTCAGCCTTTTGG 59.507 50.000 0.00 0.00 44.18 3.28
3112 4526 3.420893 TCCTAACCATGTCAGCCTTTTG 58.579 45.455 0.00 0.00 0.00 2.44
3113 4527 3.806949 TCCTAACCATGTCAGCCTTTT 57.193 42.857 0.00 0.00 0.00 2.27
3114 4528 3.010584 ACATCCTAACCATGTCAGCCTTT 59.989 43.478 0.00 0.00 27.49 3.11
3115 4529 2.578021 ACATCCTAACCATGTCAGCCTT 59.422 45.455 0.00 0.00 27.49 4.35
3116 4530 2.200081 ACATCCTAACCATGTCAGCCT 58.800 47.619 0.00 0.00 27.49 4.58
3117 4531 2.717639 ACATCCTAACCATGTCAGCC 57.282 50.000 0.00 0.00 27.49 4.85
3118 4532 5.615289 AGAATACATCCTAACCATGTCAGC 58.385 41.667 0.00 0.00 35.95 4.26
3119 4533 6.820335 TGAGAATACATCCTAACCATGTCAG 58.180 40.000 0.00 0.00 35.95 3.51
3120 4534 6.806668 TGAGAATACATCCTAACCATGTCA 57.193 37.500 0.00 0.00 35.95 3.58
3121 4535 7.275920 ACTTGAGAATACATCCTAACCATGTC 58.724 38.462 0.00 0.00 35.95 3.06
3122 4536 7.200434 ACTTGAGAATACATCCTAACCATGT 57.800 36.000 0.00 0.00 38.13 3.21
3123 4537 9.784531 AATACTTGAGAATACATCCTAACCATG 57.215 33.333 0.00 0.00 0.00 3.66
3124 4538 9.784531 CAATACTTGAGAATACATCCTAACCAT 57.215 33.333 0.00 0.00 0.00 3.55
3125 4539 8.768397 ACAATACTTGAGAATACATCCTAACCA 58.232 33.333 0.00 0.00 0.00 3.67
3126 4540 9.614792 AACAATACTTGAGAATACATCCTAACC 57.385 33.333 0.00 0.00 0.00 2.85
3164 4578 9.273016 GCAGCTATTTAGGTATAAACATGAGAA 57.727 33.333 0.00 0.00 33.78 2.87
3165 4579 8.428852 TGCAGCTATTTAGGTATAAACATGAGA 58.571 33.333 0.00 0.00 33.78 3.27
3166 4580 8.499162 GTGCAGCTATTTAGGTATAAACATGAG 58.501 37.037 0.00 0.00 33.78 2.90
3167 4581 7.444183 GGTGCAGCTATTTAGGTATAAACATGA 59.556 37.037 9.07 0.00 33.78 3.07
3168 4582 7.228507 TGGTGCAGCTATTTAGGTATAAACATG 59.771 37.037 18.08 0.00 33.78 3.21
3169 4583 7.287061 TGGTGCAGCTATTTAGGTATAAACAT 58.713 34.615 18.08 0.00 33.78 2.71
3170 4584 6.654959 TGGTGCAGCTATTTAGGTATAAACA 58.345 36.000 18.08 0.00 33.78 2.83
3171 4585 7.562454 TTGGTGCAGCTATTTAGGTATAAAC 57.438 36.000 18.08 0.00 33.78 2.01
3172 4586 8.217799 AGATTGGTGCAGCTATTTAGGTATAAA 58.782 33.333 18.08 0.00 35.41 1.40
3173 4587 7.745717 AGATTGGTGCAGCTATTTAGGTATAA 58.254 34.615 18.08 0.00 31.93 0.98
3174 4588 7.316393 AGATTGGTGCAGCTATTTAGGTATA 57.684 36.000 18.08 0.00 31.93 1.47
3175 4589 6.192970 AGATTGGTGCAGCTATTTAGGTAT 57.807 37.500 18.08 0.00 31.93 2.73
3176 4590 5.630415 AGATTGGTGCAGCTATTTAGGTA 57.370 39.130 18.08 0.00 31.93 3.08
3177 4591 4.510167 AGATTGGTGCAGCTATTTAGGT 57.490 40.909 18.08 0.00 33.70 3.08
3178 4592 4.883585 TCAAGATTGGTGCAGCTATTTAGG 59.116 41.667 18.08 6.76 0.00 2.69
3179 4593 6.261603 TCATCAAGATTGGTGCAGCTATTTAG 59.738 38.462 18.08 8.61 39.14 1.85
3180 4594 6.121590 TCATCAAGATTGGTGCAGCTATTTA 58.878 36.000 18.08 2.88 39.14 1.40
3181 4595 4.951715 TCATCAAGATTGGTGCAGCTATTT 59.048 37.500 18.08 7.52 39.14 1.40
3182 4596 4.529897 TCATCAAGATTGGTGCAGCTATT 58.470 39.130 18.08 0.00 39.14 1.73
3183 4597 4.160642 TCATCAAGATTGGTGCAGCTAT 57.839 40.909 18.08 15.29 39.14 2.97
3184 4598 3.632643 TCATCAAGATTGGTGCAGCTA 57.367 42.857 18.08 10.34 39.14 3.32
3185 4599 2.502142 TCATCAAGATTGGTGCAGCT 57.498 45.000 18.08 0.00 39.14 4.24
3186 4600 3.795623 ATTCATCAAGATTGGTGCAGC 57.204 42.857 9.47 9.47 39.14 5.25
3187 4601 7.223971 CCATTAAATTCATCAAGATTGGTGCAG 59.776 37.037 0.78 0.00 39.14 4.41
3188 4602 7.042950 CCATTAAATTCATCAAGATTGGTGCA 58.957 34.615 0.78 0.00 39.14 4.57
3189 4603 7.267128 TCCATTAAATTCATCAAGATTGGTGC 58.733 34.615 0.78 0.00 39.14 5.01
3190 4604 9.256477 CATCCATTAAATTCATCAAGATTGGTG 57.744 33.333 0.00 0.00 40.63 4.17
3191 4605 8.426489 CCATCCATTAAATTCATCAAGATTGGT 58.574 33.333 0.00 0.00 0.00 3.67
3192 4606 8.644216 TCCATCCATTAAATTCATCAAGATTGG 58.356 33.333 0.00 0.00 0.00 3.16
3196 4610 9.204337 ACAATCCATCCATTAAATTCATCAAGA 57.796 29.630 0.00 0.00 0.00 3.02
3197 4611 9.472361 GACAATCCATCCATTAAATTCATCAAG 57.528 33.333 0.00 0.00 0.00 3.02
3198 4612 8.423349 GGACAATCCATCCATTAAATTCATCAA 58.577 33.333 0.00 0.00 36.28 2.57
3199 4613 7.564292 TGGACAATCCATCCATTAAATTCATCA 59.436 33.333 0.00 0.00 42.67 3.07
3200 4614 7.954835 TGGACAATCCATCCATTAAATTCATC 58.045 34.615 0.00 0.00 42.67 2.92
3201 4615 7.917730 TGGACAATCCATCCATTAAATTCAT 57.082 32.000 0.00 0.00 42.67 2.57
3215 4629 4.509464 GGTACCTACCGATGGACAATCCA 61.509 52.174 4.06 0.00 43.19 3.41
3216 4630 2.036862 GGTACCTACCGATGGACAATCC 59.963 54.545 4.06 0.00 36.50 3.01
3217 4631 3.382048 GGTACCTACCGATGGACAATC 57.618 52.381 4.06 0.00 36.50 2.67
3228 4642 8.114743 AGTATATTACTGGAGATGGTACCTACC 58.885 40.741 14.36 11.21 41.23 3.18
3229 4643 9.531158 AAGTATATTACTGGAGATGGTACCTAC 57.469 37.037 14.36 7.12 39.39 3.18
3232 4646 9.531158 AGTAAGTATATTACTGGAGATGGTACC 57.469 37.037 4.43 4.43 39.39 3.34
3243 4657 9.557338 GTTGCCGATCTAGTAAGTATATTACTG 57.443 37.037 9.89 2.16 39.39 2.74
3245 4659 7.217825 GCGTTGCCGATCTAGTAAGTATATTAC 59.782 40.741 0.00 0.00 35.63 1.89
3250 4664 3.608707 CGCGTTGCCGATCTAGTAAGTAT 60.609 47.826 0.00 0.00 35.63 2.12
3252 4666 1.533338 CGCGTTGCCGATCTAGTAAGT 60.533 52.381 0.00 0.00 35.63 2.24
3253 4667 1.121240 CGCGTTGCCGATCTAGTAAG 58.879 55.000 0.00 0.00 35.63 2.34
3254 4668 0.868602 GCGCGTTGCCGATCTAGTAA 60.869 55.000 8.43 0.00 37.76 2.24
3255 4669 1.298863 GCGCGTTGCCGATCTAGTA 60.299 57.895 8.43 0.00 37.76 1.82
3281 4695 3.072468 TTAGGACCGGCACCCTCG 61.072 66.667 13.19 0.00 34.11 4.63
3284 4698 1.394266 TATCGTTAGGACCGGCACCC 61.394 60.000 13.65 7.28 0.00 4.61
3286 4700 1.779569 CATATCGTTAGGACCGGCAC 58.220 55.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.