Multiple sequence alignment - TraesCS6B01G403100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G403100 chr6B 100.000 3755 0 0 1 3755 678806221 678809975 0.000000e+00 6935
1 TraesCS6B01G403100 chr6B 91.864 2655 182 19 1117 3745 678876231 678878877 0.000000e+00 3675
2 TraesCS6B01G403100 chr6B 79.522 1714 288 32 1117 2795 678881218 678882903 0.000000e+00 1162
3 TraesCS6B01G403100 chr6B 79.429 1716 293 39 1116 2795 678796028 678797719 0.000000e+00 1158
4 TraesCS6B01G403100 chr6B 80.811 1282 219 17 1216 2480 679385354 679384083 0.000000e+00 979
5 TraesCS6B01G403100 chr6B 90.080 746 48 6 182 923 54294926 54294203 0.000000e+00 944
6 TraesCS6B01G403100 chr6B 85.763 295 22 8 3481 3755 679394462 679394168 1.020000e-75 294
7 TraesCS6B01G403100 chr6B 84.983 293 26 6 3481 3755 679531671 679531379 7.940000e-72 281
8 TraesCS6B01G403100 chr6B 81.379 145 25 2 1319 1462 678814876 678815019 2.370000e-22 117
9 TraesCS6B01G403100 chr6D 91.411 1793 140 12 1506 3293 448037057 448038840 0.000000e+00 2446
10 TraesCS6B01G403100 chr6D 88.825 1727 126 33 1093 2795 448511009 448509326 0.000000e+00 2058
11 TraesCS6B01G403100 chr6D 92.294 545 28 9 976 1513 448036314 448036851 0.000000e+00 761
12 TraesCS6B01G403100 chr6D 85.549 346 30 14 1116 1443 448041328 448041671 9.990000e-91 344
13 TraesCS6B01G403100 chr6D 91.827 208 15 2 3549 3755 448038845 448039051 4.750000e-74 289
14 TraesCS6B01G403100 chr6D 87.000 100 6 2 976 1075 448512033 448511941 5.130000e-19 106
15 TraesCS6B01G403100 chr6A 90.608 1086 70 13 2691 3755 594500689 594501763 0.000000e+00 1411
16 TraesCS6B01G403100 chr6A 79.232 1719 296 42 1116 2795 594504078 594505774 0.000000e+00 1140
17 TraesCS6B01G403100 chr2B 92.112 748 54 5 179 922 45557040 45557786 0.000000e+00 1050
18 TraesCS6B01G403100 chr2B 87.204 211 25 2 716 924 475542979 475543189 4.850000e-59 239
19 TraesCS6B01G403100 chr4B 89.586 749 73 4 179 923 528897741 528898488 0.000000e+00 946
20 TraesCS6B01G403100 chr1A 87.433 748 90 3 182 925 534883488 534882741 0.000000e+00 857
21 TraesCS6B01G403100 chr1A 87.433 748 90 3 182 925 534902486 534901739 0.000000e+00 857
22 TraesCS6B01G403100 chr1A 86.898 748 94 3 182 925 534864503 534863756 0.000000e+00 835
23 TraesCS6B01G403100 chr1A 86.400 750 98 3 179 924 567994643 567995392 0.000000e+00 817
24 TraesCS6B01G403100 chr7B 85.490 765 98 9 164 924 344319270 344320025 0.000000e+00 785
25 TraesCS6B01G403100 chr2A 84.853 746 102 8 183 924 680258291 680259029 0.000000e+00 741
26 TraesCS6B01G403100 chrUn 86.007 293 23 6 3481 3755 79399387 79399095 7.880000e-77 298
27 TraesCS6B01G403100 chrUn 84.983 293 26 6 3481 3755 79372763 79372471 7.940000e-72 281
28 TraesCS6B01G403100 chr3B 87.264 212 26 1 716 926 801405382 801405171 1.350000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G403100 chr6B 678806221 678809975 3754 False 6935.0 6935 100.00000 1 3755 1 chr6B.!!$F2 3754
1 TraesCS6B01G403100 chr6B 678876231 678882903 6672 False 2418.5 3675 85.69300 1117 3745 2 chr6B.!!$F4 2628
2 TraesCS6B01G403100 chr6B 678796028 678797719 1691 False 1158.0 1158 79.42900 1116 2795 1 chr6B.!!$F1 1679
3 TraesCS6B01G403100 chr6B 679384083 679385354 1271 True 979.0 979 80.81100 1216 2480 1 chr6B.!!$R2 1264
4 TraesCS6B01G403100 chr6B 54294203 54294926 723 True 944.0 944 90.08000 182 923 1 chr6B.!!$R1 741
5 TraesCS6B01G403100 chr6D 448509326 448512033 2707 True 1082.0 2058 87.91250 976 2795 2 chr6D.!!$R1 1819
6 TraesCS6B01G403100 chr6D 448036314 448041671 5357 False 960.0 2446 90.27025 976 3755 4 chr6D.!!$F1 2779
7 TraesCS6B01G403100 chr6A 594500689 594505774 5085 False 1275.5 1411 84.92000 1116 3755 2 chr6A.!!$F1 2639
8 TraesCS6B01G403100 chr2B 45557040 45557786 746 False 1050.0 1050 92.11200 179 922 1 chr2B.!!$F1 743
9 TraesCS6B01G403100 chr4B 528897741 528898488 747 False 946.0 946 89.58600 179 923 1 chr4B.!!$F1 744
10 TraesCS6B01G403100 chr1A 534882741 534883488 747 True 857.0 857 87.43300 182 925 1 chr1A.!!$R2 743
11 TraesCS6B01G403100 chr1A 534901739 534902486 747 True 857.0 857 87.43300 182 925 1 chr1A.!!$R3 743
12 TraesCS6B01G403100 chr1A 534863756 534864503 747 True 835.0 835 86.89800 182 925 1 chr1A.!!$R1 743
13 TraesCS6B01G403100 chr1A 567994643 567995392 749 False 817.0 817 86.40000 179 924 1 chr1A.!!$F1 745
14 TraesCS6B01G403100 chr7B 344319270 344320025 755 False 785.0 785 85.49000 164 924 1 chr7B.!!$F1 760
15 TraesCS6B01G403100 chr2A 680258291 680259029 738 False 741.0 741 84.85300 183 924 1 chr2A.!!$F1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 672 0.108963 CTCCGTATCCCCTCGACTCT 59.891 60.0 0.0 0.0 0.0 3.24 F
942 948 0.457443 GCTAAAATGGGCTGGCTCAC 59.543 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 4144 0.244450 CAAATTGCACACGGCCAGAT 59.756 50.0 2.24 0.00 43.89 2.90 R
2827 10365 0.179176 CTTCTCTCACACTCGAGGCG 60.179 60.0 18.41 10.01 33.59 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 2.314323 AAAAAGTTTGCACAGCAGGG 57.686 45.000 0.00 0.00 40.61 4.45
154 155 2.115910 TTTGCACAGCAGGGGAGG 59.884 61.111 0.00 0.00 40.61 4.30
155 156 3.512154 TTTGCACAGCAGGGGAGGG 62.512 63.158 0.00 0.00 40.61 4.30
158 159 2.688666 CACAGCAGGGGAGGGCTA 60.689 66.667 0.00 0.00 38.56 3.93
162 163 0.259938 CAGCAGGGGAGGGCTAAAAT 59.740 55.000 0.00 0.00 38.56 1.82
168 169 3.052869 CAGGGGAGGGCTAAAATTAAGGT 60.053 47.826 0.00 0.00 0.00 3.50
171 172 3.704566 GGGAGGGCTAAAATTAAGGTTGG 59.295 47.826 0.00 0.00 0.00 3.77
180 181 9.173021 GGCTAAAATTAAGGTTGGCAATTTTAT 57.827 29.630 1.92 0.00 40.54 1.40
203 204 3.769300 CCATGGATATCCGACCTGTATGA 59.231 47.826 17.04 0.00 39.43 2.15
266 267 1.037493 CCGGACCCGATTACTCATGA 58.963 55.000 10.42 0.00 42.83 3.07
375 376 0.321919 CCCACAGTCACATGTCCCAG 60.322 60.000 0.00 0.00 0.00 4.45
535 538 3.570125 TGACTCATCTAAGTATCAGCCCG 59.430 47.826 0.00 0.00 0.00 6.13
580 583 1.457643 CCCTAGAGATGGCCGGTGA 60.458 63.158 1.90 0.00 0.00 4.02
587 590 1.221840 GATGGCCGGTGATGTCAGT 59.778 57.895 1.90 0.00 0.00 3.41
667 670 1.528776 GCTCCGTATCCCCTCGACT 60.529 63.158 0.00 0.00 0.00 4.18
669 672 0.108963 CTCCGTATCCCCTCGACTCT 59.891 60.000 0.00 0.00 0.00 3.24
704 708 7.922811 TGTTTTTCACACATGCATTAACACATA 59.077 29.630 0.00 0.00 0.00 2.29
899 905 1.519408 AAGTTGTTCAACCCGATCCG 58.481 50.000 11.38 0.00 0.00 4.18
925 931 0.929244 ACCCATTGCCATCCTTAGCT 59.071 50.000 0.00 0.00 0.00 3.32
927 933 2.513738 ACCCATTGCCATCCTTAGCTAA 59.486 45.455 5.94 5.94 0.00 3.09
929 935 3.960102 CCCATTGCCATCCTTAGCTAAAA 59.040 43.478 7.74 0.00 0.00 1.52
930 936 4.590222 CCCATTGCCATCCTTAGCTAAAAT 59.410 41.667 7.74 1.59 0.00 1.82
932 938 5.510179 CCATTGCCATCCTTAGCTAAAATGG 60.510 44.000 27.99 27.99 39.90 3.16
933 939 3.565307 TGCCATCCTTAGCTAAAATGGG 58.435 45.455 30.46 20.02 37.85 4.00
934 940 2.297315 GCCATCCTTAGCTAAAATGGGC 59.703 50.000 30.46 24.72 37.85 5.36
937 943 3.297134 TCCTTAGCTAAAATGGGCTGG 57.703 47.619 7.74 2.86 39.31 4.85
938 944 1.683385 CCTTAGCTAAAATGGGCTGGC 59.317 52.381 7.74 0.00 39.31 4.85
939 945 2.659428 CTTAGCTAAAATGGGCTGGCT 58.341 47.619 7.74 0.00 39.31 4.75
940 946 2.348411 TAGCTAAAATGGGCTGGCTC 57.652 50.000 0.00 0.00 39.31 4.70
942 948 0.457443 GCTAAAATGGGCTGGCTCAC 59.543 55.000 0.00 0.00 0.00 3.51
989 995 5.860941 ATATATAGGGATTGGACGAGCAG 57.139 43.478 0.00 0.00 0.00 4.24
1043 1049 3.614870 GCTTTCGCCCAAGAAATCACAAT 60.615 43.478 0.00 0.00 39.13 2.71
1060 1066 2.029290 ACAATCTGTAACGGAGTCGCTT 60.029 45.455 0.00 0.00 45.00 4.68
1155 3432 1.141019 GATCCACGTCTAGCCGCAA 59.859 57.895 0.00 0.00 0.00 4.85
1175 3455 1.626654 AACCTTTGCAGACGCGATCG 61.627 55.000 15.93 11.69 42.97 3.69
1251 3544 3.366629 GCCATCCGCGAGATCCTA 58.633 61.111 8.23 0.00 30.59 2.94
1380 3682 1.789576 AATGGGTGGGACGCTTCCTT 61.790 55.000 9.40 0.00 42.38 3.36
1434 3736 2.598787 GGACCCCATGTTCCGGACA 61.599 63.158 1.83 6.40 43.71 4.02
1628 4144 4.490743 CAGTACAACATGTCGGTCATACA 58.509 43.478 0.00 0.00 34.67 2.29
1760 9279 0.813610 TCGAGCACAACCCAACAGTG 60.814 55.000 0.00 0.00 36.39 3.66
1829 9348 2.429610 GGAGGTATCTAGGTTCGCACAA 59.570 50.000 0.00 0.00 0.00 3.33
1838 9357 2.094762 GGTTCGCACAACCTCTACAT 57.905 50.000 7.23 0.00 37.34 2.29
2088 9608 2.357034 CAACTCGGGGTCACCACG 60.357 66.667 14.12 14.12 40.22 4.94
2131 9651 0.471780 TCTGTCAAGACCAGGCCTCA 60.472 55.000 0.00 0.00 0.00 3.86
2144 9664 3.465871 CAGGCCTCAAGCTAAAGATCTC 58.534 50.000 0.00 0.00 43.05 2.75
2145 9665 3.110705 AGGCCTCAAGCTAAAGATCTCA 58.889 45.455 0.00 0.00 43.05 3.27
2474 9994 3.496692 GGGAAGTGGTAGATGCATGCATA 60.497 47.826 32.27 16.12 36.70 3.14
2480 10000 6.537355 AGTGGTAGATGCATGCATATAAGTT 58.463 36.000 30.84 16.82 36.70 2.66
2546 10071 8.877864 TTCTTCTGTTATTGTCATATTTGGGT 57.122 30.769 0.00 0.00 0.00 4.51
2581 10117 3.063997 GTGATCACCATTGTTAAGCTCGG 59.936 47.826 15.31 0.00 0.00 4.63
2615 10151 5.538053 TGCCCAACATGAACTTCATTTTCTA 59.462 36.000 0.00 0.00 34.28 2.10
2795 10333 5.069516 ACTGTGAAAGCAAGGATTTGTGAAT 59.930 36.000 0.00 0.00 36.65 2.57
2803 10341 6.662755 AGCAAGGATTTGTGAATATGGACTA 58.337 36.000 0.00 0.00 36.65 2.59
2808 10346 7.456725 AGGATTTGTGAATATGGACTAGATGG 58.543 38.462 0.00 0.00 0.00 3.51
2810 10348 8.375506 GGATTTGTGAATATGGACTAGATGGTA 58.624 37.037 0.00 0.00 0.00 3.25
2812 10350 6.918067 TGTGAATATGGACTAGATGGTAGG 57.082 41.667 0.00 0.00 0.00 3.18
2814 10352 6.844388 TGTGAATATGGACTAGATGGTAGGTT 59.156 38.462 0.00 0.00 0.00 3.50
2816 10354 8.211629 GTGAATATGGACTAGATGGTAGGTTTT 58.788 37.037 0.00 0.00 0.00 2.43
2817 10355 9.442062 TGAATATGGACTAGATGGTAGGTTTTA 57.558 33.333 0.00 0.00 0.00 1.52
2818 10356 9.930693 GAATATGGACTAGATGGTAGGTTTTAG 57.069 37.037 0.00 0.00 0.00 1.85
2860 10398 4.885325 GTGAGAGAAGTTAAACACCCCAAA 59.115 41.667 0.00 0.00 0.00 3.28
2950 10488 3.532155 TTGCAACCAACCCCACGC 61.532 61.111 0.00 0.00 0.00 5.34
2954 10492 4.906537 AACCAACCCCACGCCACC 62.907 66.667 0.00 0.00 0.00 4.61
2965 10503 3.244105 CGCCACCGTGTTCTTGAG 58.756 61.111 0.00 0.00 0.00 3.02
2966 10504 1.594293 CGCCACCGTGTTCTTGAGT 60.594 57.895 0.00 0.00 0.00 3.41
2969 10507 1.663695 CCACCGTGTTCTTGAGTTGT 58.336 50.000 0.00 0.00 0.00 3.32
2976 10514 3.242413 CGTGTTCTTGAGTTGTCCACAAG 60.242 47.826 0.00 0.00 41.27 3.16
2978 10516 1.581934 TCTTGAGTTGTCCACAAGCG 58.418 50.000 0.00 0.00 40.20 4.68
2997 10535 1.094785 GTGGCGCAACAGGTGATTAT 58.905 50.000 10.88 0.00 0.00 1.28
3052 10590 4.985538 TTAGCACTAGTTCTAGTCAGCC 57.014 45.455 9.24 0.70 0.00 4.85
3075 10613 6.101997 CCAATCAAGGAAGACAAAATAAGGC 58.898 40.000 0.00 0.00 0.00 4.35
3135 10675 7.559897 AGGATAGTTGTCACCAAAAGAAAAAGA 59.440 33.333 0.00 0.00 30.94 2.52
3141 10681 8.882736 GTTGTCACCAAAAGAAAAAGATGAAAT 58.117 29.630 0.00 0.00 30.94 2.17
3191 10733 8.145122 ACAAGTACTCTGATTAATTAGCCTAGC 58.855 37.037 0.00 0.00 0.00 3.42
3215 10757 6.537566 CCTAGAAACAACAATGATTCACTCG 58.462 40.000 0.00 0.00 39.92 4.18
3216 10758 5.362556 AGAAACAACAATGATTCACTCGG 57.637 39.130 0.00 0.00 39.92 4.63
3219 10761 3.738982 ACAACAATGATTCACTCGGTCA 58.261 40.909 0.00 0.00 0.00 4.02
3233 10775 3.566322 ACTCGGTCACTAATGCTAGCTAG 59.434 47.826 16.84 16.84 0.00 3.42
3237 10779 4.202020 CGGTCACTAATGCTAGCTAGAACA 60.202 45.833 25.15 13.82 0.00 3.18
3248 10790 5.828328 TGCTAGCTAGAACACTTATGAGCTA 59.172 40.000 25.15 0.00 40.58 3.32
3249 10791 6.321435 TGCTAGCTAGAACACTTATGAGCTAA 59.679 38.462 25.15 0.00 40.84 3.09
3252 10794 6.936279 AGCTAGAACACTTATGAGCTAAACA 58.064 36.000 0.00 0.00 38.46 2.83
3255 10797 8.171840 GCTAGAACACTTATGAGCTAAACAAAG 58.828 37.037 0.00 0.00 0.00 2.77
3272 10814 3.260884 ACAAAGATAGAAGGGCAACTCGA 59.739 43.478 0.00 0.00 0.00 4.04
3282 10824 1.086634 GGCAACTCGAGGTCAGATGC 61.087 60.000 18.41 15.36 38.58 3.91
3285 10827 0.534412 AACTCGAGGTCAGATGCTGG 59.466 55.000 18.41 0.00 31.51 4.85
3299 10841 2.359975 CTGGAAGCCGTTGGGGAC 60.360 66.667 0.00 0.00 38.47 4.46
3315 10857 3.199880 GGGACCATCATGACAGTTAGG 57.800 52.381 0.00 0.00 0.00 2.69
3316 10858 2.505819 GGGACCATCATGACAGTTAGGT 59.494 50.000 0.00 0.00 0.00 3.08
3317 10859 3.054361 GGGACCATCATGACAGTTAGGTT 60.054 47.826 0.00 0.00 0.00 3.50
3318 10860 4.567747 GGGACCATCATGACAGTTAGGTTT 60.568 45.833 0.00 0.00 0.00 3.27
3319 10861 4.396166 GGACCATCATGACAGTTAGGTTTG 59.604 45.833 0.00 0.00 0.00 2.93
3320 10862 3.758554 ACCATCATGACAGTTAGGTTTGC 59.241 43.478 0.00 0.00 0.00 3.68
3321 10863 3.129287 CCATCATGACAGTTAGGTTTGCC 59.871 47.826 0.00 0.00 0.00 4.52
3322 10864 3.500448 TCATGACAGTTAGGTTTGCCA 57.500 42.857 0.00 0.00 37.19 4.92
3323 10865 3.411446 TCATGACAGTTAGGTTTGCCAG 58.589 45.455 0.00 0.00 37.19 4.85
3324 10866 3.072330 TCATGACAGTTAGGTTTGCCAGA 59.928 43.478 0.00 0.00 37.19 3.86
3325 10867 3.126001 TGACAGTTAGGTTTGCCAGAG 57.874 47.619 0.00 0.00 37.19 3.35
3326 10868 1.807142 GACAGTTAGGTTTGCCAGAGC 59.193 52.381 0.00 0.00 37.19 4.09
3327 10869 0.798776 CAGTTAGGTTTGCCAGAGCG 59.201 55.000 0.00 0.00 44.31 5.03
3328 10870 0.321653 AGTTAGGTTTGCCAGAGCGG 60.322 55.000 0.00 0.00 44.31 5.52
3329 10871 0.321298 GTTAGGTTTGCCAGAGCGGA 60.321 55.000 0.00 0.00 44.31 5.54
3330 10872 0.398696 TTAGGTTTGCCAGAGCGGAA 59.601 50.000 0.00 0.00 44.31 4.30
3331 10873 0.036388 TAGGTTTGCCAGAGCGGAAG 60.036 55.000 0.00 0.00 44.31 3.46
3332 10874 1.302511 GGTTTGCCAGAGCGGAAGA 60.303 57.895 0.00 0.00 44.31 2.87
3333 10875 0.678048 GGTTTGCCAGAGCGGAAGAT 60.678 55.000 0.00 0.00 44.31 2.40
3347 10889 6.382869 AGCGGAAGATCAAAATAATGAAGG 57.617 37.500 0.00 0.00 32.06 3.46
3348 10890 5.300286 AGCGGAAGATCAAAATAATGAAGGG 59.700 40.000 0.00 0.00 32.06 3.95
3349 10891 5.507985 GCGGAAGATCAAAATAATGAAGGGG 60.508 44.000 0.00 0.00 32.06 4.79
3350 10892 5.010012 CGGAAGATCAAAATAATGAAGGGGG 59.990 44.000 0.00 0.00 32.06 5.40
3365 10907 2.225792 GGGGGAGATGAGTGAAGGG 58.774 63.158 0.00 0.00 0.00 3.95
3366 10908 0.326618 GGGGGAGATGAGTGAAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
3367 10909 1.584724 GGGGAGATGAGTGAAGGGAA 58.415 55.000 0.00 0.00 0.00 3.97
3368 10910 1.488393 GGGGAGATGAGTGAAGGGAAG 59.512 57.143 0.00 0.00 0.00 3.46
3369 10911 1.488393 GGGAGATGAGTGAAGGGAAGG 59.512 57.143 0.00 0.00 0.00 3.46
3370 10912 1.134250 GGAGATGAGTGAAGGGAAGGC 60.134 57.143 0.00 0.00 0.00 4.35
3371 10913 0.539051 AGATGAGTGAAGGGAAGGCG 59.461 55.000 0.00 0.00 0.00 5.52
3372 10914 0.462759 GATGAGTGAAGGGAAGGCGG 60.463 60.000 0.00 0.00 0.00 6.13
3373 10915 0.909610 ATGAGTGAAGGGAAGGCGGA 60.910 55.000 0.00 0.00 0.00 5.54
3374 10916 1.219393 GAGTGAAGGGAAGGCGGAG 59.781 63.158 0.00 0.00 0.00 4.63
3375 10917 2.245438 GAGTGAAGGGAAGGCGGAGG 62.245 65.000 0.00 0.00 0.00 4.30
3376 10918 2.203938 TGAAGGGAAGGCGGAGGT 60.204 61.111 0.00 0.00 0.00 3.85
3377 10919 2.269241 GAAGGGAAGGCGGAGGTG 59.731 66.667 0.00 0.00 0.00 4.00
3378 10920 2.203938 AAGGGAAGGCGGAGGTGA 60.204 61.111 0.00 0.00 0.00 4.02
3379 10921 1.838073 GAAGGGAAGGCGGAGGTGAA 61.838 60.000 0.00 0.00 0.00 3.18
3380 10922 1.208165 AAGGGAAGGCGGAGGTGAAT 61.208 55.000 0.00 0.00 0.00 2.57
3381 10923 1.452108 GGGAAGGCGGAGGTGAATG 60.452 63.158 0.00 0.00 0.00 2.67
3382 10924 1.602237 GGAAGGCGGAGGTGAATGA 59.398 57.895 0.00 0.00 0.00 2.57
3383 10925 0.744771 GGAAGGCGGAGGTGAATGAC 60.745 60.000 0.00 0.00 0.00 3.06
3384 10926 0.036388 GAAGGCGGAGGTGAATGACA 60.036 55.000 0.00 0.00 0.00 3.58
3385 10927 0.620556 AAGGCGGAGGTGAATGACAT 59.379 50.000 0.00 0.00 0.00 3.06
3386 10928 0.107508 AGGCGGAGGTGAATGACATG 60.108 55.000 0.00 0.00 0.00 3.21
3387 10929 1.097547 GGCGGAGGTGAATGACATGG 61.098 60.000 0.00 0.00 0.00 3.66
3388 10930 1.718757 GCGGAGGTGAATGACATGGC 61.719 60.000 0.00 0.00 0.00 4.40
3389 10931 1.431488 CGGAGGTGAATGACATGGCG 61.431 60.000 0.00 0.00 0.00 5.69
3390 10932 0.107703 GGAGGTGAATGACATGGCGA 60.108 55.000 0.00 0.00 0.00 5.54
3391 10933 1.009829 GAGGTGAATGACATGGCGAC 58.990 55.000 0.00 0.00 0.00 5.19
3392 10934 0.392998 AGGTGAATGACATGGCGACC 60.393 55.000 0.00 0.00 0.00 4.79
3393 10935 0.676466 GGTGAATGACATGGCGACCA 60.676 55.000 0.00 1.01 38.19 4.02
3394 10936 0.729116 GTGAATGACATGGCGACCAG 59.271 55.000 0.00 0.00 36.75 4.00
3395 10937 0.392863 TGAATGACATGGCGACCAGG 60.393 55.000 8.63 8.63 41.50 4.45
3396 10938 1.077501 AATGACATGGCGACCAGGG 60.078 57.895 13.58 7.01 39.88 4.45
3397 10939 2.556840 AATGACATGGCGACCAGGGG 62.557 60.000 13.58 4.99 39.88 4.79
3400 10942 4.431131 CATGGCGACCAGGGGCTT 62.431 66.667 4.89 0.00 36.75 4.35
3401 10943 3.661648 ATGGCGACCAGGGGCTTT 61.662 61.111 4.89 0.00 36.75 3.51
3402 10944 3.645268 ATGGCGACCAGGGGCTTTC 62.645 63.158 4.89 0.00 36.75 2.62
3404 10946 4.344865 GCGACCAGGGGCTTTCCA 62.345 66.667 0.00 0.00 37.22 3.53
3405 10947 2.045926 CGACCAGGGGCTTTCCAG 60.046 66.667 0.00 0.00 37.22 3.86
3406 10948 2.361737 GACCAGGGGCTTTCCAGC 60.362 66.667 0.00 0.00 46.52 4.85
3418 10960 3.826282 TCCAGCAGGGAAAGGGAG 58.174 61.111 0.00 0.00 44.80 4.30
3419 10961 2.044551 CCAGCAGGGAAAGGGAGC 60.045 66.667 0.00 0.00 40.01 4.70
3420 10962 2.759114 CAGCAGGGAAAGGGAGCA 59.241 61.111 0.00 0.00 0.00 4.26
3421 10963 1.075482 CAGCAGGGAAAGGGAGCAA 59.925 57.895 0.00 0.00 0.00 3.91
3422 10964 0.964358 CAGCAGGGAAAGGGAGCAAG 60.964 60.000 0.00 0.00 0.00 4.01
3423 10965 1.680314 GCAGGGAAAGGGAGCAAGG 60.680 63.158 0.00 0.00 0.00 3.61
3424 10966 2.078452 CAGGGAAAGGGAGCAAGGA 58.922 57.895 0.00 0.00 0.00 3.36
3425 10967 0.627986 CAGGGAAAGGGAGCAAGGAT 59.372 55.000 0.00 0.00 0.00 3.24
3426 10968 1.846439 CAGGGAAAGGGAGCAAGGATA 59.154 52.381 0.00 0.00 0.00 2.59
3427 10969 2.131023 AGGGAAAGGGAGCAAGGATAG 58.869 52.381 0.00 0.00 0.00 2.08
3428 10970 2.127708 GGGAAAGGGAGCAAGGATAGA 58.872 52.381 0.00 0.00 0.00 1.98
3429 10971 2.509964 GGGAAAGGGAGCAAGGATAGAA 59.490 50.000 0.00 0.00 0.00 2.10
3430 10972 3.053619 GGGAAAGGGAGCAAGGATAGAAA 60.054 47.826 0.00 0.00 0.00 2.52
3431 10973 4.569865 GGGAAAGGGAGCAAGGATAGAAAA 60.570 45.833 0.00 0.00 0.00 2.29
3432 10974 4.642437 GGAAAGGGAGCAAGGATAGAAAAG 59.358 45.833 0.00 0.00 0.00 2.27
3433 10975 3.289407 AGGGAGCAAGGATAGAAAAGC 57.711 47.619 0.00 0.00 0.00 3.51
3434 10976 2.578021 AGGGAGCAAGGATAGAAAAGCA 59.422 45.455 0.00 0.00 0.00 3.91
3435 10977 2.685388 GGGAGCAAGGATAGAAAAGCAC 59.315 50.000 0.00 0.00 0.00 4.40
3436 10978 3.347216 GGAGCAAGGATAGAAAAGCACA 58.653 45.455 0.00 0.00 0.00 4.57
3437 10979 3.127721 GGAGCAAGGATAGAAAAGCACAC 59.872 47.826 0.00 0.00 0.00 3.82
3438 10980 2.744202 AGCAAGGATAGAAAAGCACACG 59.256 45.455 0.00 0.00 0.00 4.49
3439 10981 2.159517 GCAAGGATAGAAAAGCACACGG 60.160 50.000 0.00 0.00 0.00 4.94
3440 10982 2.403252 AGGATAGAAAAGCACACGGG 57.597 50.000 0.00 0.00 0.00 5.28
3441 10983 1.628846 AGGATAGAAAAGCACACGGGT 59.371 47.619 0.00 0.00 0.00 5.28
3443 10985 1.737793 GATAGAAAAGCACACGGGTGG 59.262 52.381 21.41 0.88 45.38 4.61
3452 10994 2.975799 CACGGGTGGTGGGAAACG 60.976 66.667 0.00 0.00 43.16 3.60
3453 10995 4.259131 ACGGGTGGTGGGAAACGG 62.259 66.667 0.00 0.00 0.00 4.44
3455 10997 3.572222 GGGTGGTGGGAAACGGGA 61.572 66.667 0.00 0.00 0.00 5.14
3456 10998 2.033602 GGTGGTGGGAAACGGGAG 59.966 66.667 0.00 0.00 0.00 4.30
3457 10999 2.033602 GTGGTGGGAAACGGGAGG 59.966 66.667 0.00 0.00 0.00 4.30
3458 11000 3.253838 TGGTGGGAAACGGGAGGG 61.254 66.667 0.00 0.00 0.00 4.30
3459 11001 2.931649 GGTGGGAAACGGGAGGGA 60.932 66.667 0.00 0.00 0.00 4.20
3460 11002 2.350134 GTGGGAAACGGGAGGGAC 59.650 66.667 0.00 0.00 0.00 4.46
3461 11003 3.315949 TGGGAAACGGGAGGGACG 61.316 66.667 0.00 0.00 37.36 4.79
3462 11004 2.999063 GGGAAACGGGAGGGACGA 60.999 66.667 0.00 0.00 34.93 4.20
3463 11005 2.586293 GGGAAACGGGAGGGACGAA 61.586 63.158 0.00 0.00 34.93 3.85
3464 11006 1.079336 GGAAACGGGAGGGACGAAG 60.079 63.158 0.00 0.00 34.93 3.79
3465 11007 1.079336 GAAACGGGAGGGACGAAGG 60.079 63.158 0.00 0.00 34.93 3.46
3466 11008 1.534717 AAACGGGAGGGACGAAGGA 60.535 57.895 0.00 0.00 34.93 3.36
3467 11009 1.824224 AAACGGGAGGGACGAAGGAC 61.824 60.000 0.00 0.00 34.93 3.85
3477 11019 4.394078 CGAAGGACGTCGACGCCA 62.394 66.667 35.60 0.00 43.86 5.69
3478 11020 2.181021 GAAGGACGTCGACGCCAT 59.819 61.111 35.60 29.58 44.43 4.40
3479 11021 1.445582 GAAGGACGTCGACGCCATT 60.446 57.895 35.60 30.87 44.43 3.16
3480 11022 0.179156 GAAGGACGTCGACGCCATTA 60.179 55.000 35.60 0.00 44.43 1.90
3481 11023 0.244450 AAGGACGTCGACGCCATTAA 59.756 50.000 35.60 0.00 44.43 1.40
3482 11024 0.244450 AGGACGTCGACGCCATTAAA 59.756 50.000 35.60 0.00 44.43 1.52
3483 11025 0.367887 GGACGTCGACGCCATTAAAC 59.632 55.000 35.92 16.54 44.43 2.01
3484 11026 0.367887 GACGTCGACGCCATTAAACC 59.632 55.000 35.92 11.17 44.43 3.27
3485 11027 0.319727 ACGTCGACGCCATTAAACCA 60.320 50.000 35.92 0.00 44.43 3.67
3486 11028 0.368907 CGTCGACGCCATTAAACCAG 59.631 55.000 26.59 0.00 0.00 4.00
3487 11029 1.435577 GTCGACGCCATTAAACCAGT 58.564 50.000 0.00 0.00 0.00 4.00
3488 11030 1.127951 GTCGACGCCATTAAACCAGTG 59.872 52.381 0.00 0.00 0.00 3.66
3489 11031 1.001068 TCGACGCCATTAAACCAGTGA 59.999 47.619 0.00 0.00 0.00 3.41
3490 11032 1.393539 CGACGCCATTAAACCAGTGAG 59.606 52.381 0.00 0.00 0.00 3.51
3491 11033 1.130561 GACGCCATTAAACCAGTGAGC 59.869 52.381 0.00 0.00 0.00 4.26
3492 11034 1.271379 ACGCCATTAAACCAGTGAGCT 60.271 47.619 0.00 0.00 0.00 4.09
3493 11035 1.398390 CGCCATTAAACCAGTGAGCTC 59.602 52.381 6.82 6.82 0.00 4.09
3494 11036 1.745653 GCCATTAAACCAGTGAGCTCC 59.254 52.381 12.15 2.40 0.00 4.70
3495 11037 2.879756 GCCATTAAACCAGTGAGCTCCA 60.880 50.000 12.15 0.00 0.00 3.86
3496 11038 3.012518 CCATTAAACCAGTGAGCTCCAG 58.987 50.000 12.15 0.38 0.00 3.86
3497 11039 3.560025 CCATTAAACCAGTGAGCTCCAGT 60.560 47.826 12.15 0.00 0.00 4.00
3498 11040 3.857157 TTAAACCAGTGAGCTCCAGTT 57.143 42.857 12.15 6.60 0.00 3.16
3499 11041 2.736670 AAACCAGTGAGCTCCAGTTT 57.263 45.000 12.15 12.18 0.00 2.66
3500 11042 2.736670 AACCAGTGAGCTCCAGTTTT 57.263 45.000 12.15 0.00 0.00 2.43
3501 11043 2.736670 ACCAGTGAGCTCCAGTTTTT 57.263 45.000 12.15 0.00 0.00 1.94
3523 11065 5.663158 TTTTTGCCTCCTAGCCCTTATAT 57.337 39.130 0.00 0.00 0.00 0.86
3524 11066 5.663158 TTTTGCCTCCTAGCCCTTATATT 57.337 39.130 0.00 0.00 0.00 1.28
3525 11067 4.640771 TTGCCTCCTAGCCCTTATATTG 57.359 45.455 0.00 0.00 0.00 1.90
3526 11068 2.912956 TGCCTCCTAGCCCTTATATTGG 59.087 50.000 0.00 0.00 0.00 3.16
3527 11069 2.913617 GCCTCCTAGCCCTTATATTGGT 59.086 50.000 0.00 0.00 0.00 3.67
3528 11070 4.101856 GCCTCCTAGCCCTTATATTGGTA 58.898 47.826 0.00 0.00 0.00 3.25
3529 11071 4.162509 GCCTCCTAGCCCTTATATTGGTAG 59.837 50.000 0.00 0.00 0.00 3.18
3530 11072 5.590818 CCTCCTAGCCCTTATATTGGTAGA 58.409 45.833 0.00 0.00 33.11 2.59
3531 11073 6.206042 CCTCCTAGCCCTTATATTGGTAGAT 58.794 44.000 0.00 0.00 33.11 1.98
3532 11074 6.674419 CCTCCTAGCCCTTATATTGGTAGATT 59.326 42.308 0.00 0.00 33.11 2.40
3533 11075 7.182930 CCTCCTAGCCCTTATATTGGTAGATTT 59.817 40.741 0.00 0.00 33.11 2.17
3534 11076 8.520119 TCCTAGCCCTTATATTGGTAGATTTT 57.480 34.615 0.00 0.00 33.11 1.82
3535 11077 8.955794 TCCTAGCCCTTATATTGGTAGATTTTT 58.044 33.333 0.00 0.00 33.11 1.94
3561 11103 1.676006 GGGAATCGGCTATGGTTGTTG 59.324 52.381 0.00 0.00 0.00 3.33
3583 11125 9.593134 TGTTGTAATGCTTGTAACAAGAAATTT 57.407 25.926 0.00 0.00 32.83 1.82
3597 11139 8.614994 AACAAGAAATTTTAAAGAGTGACACG 57.385 30.769 0.00 0.00 0.00 4.49
3618 11160 7.445121 ACACGTGAGATTATCATGATATGGTT 58.555 34.615 25.01 3.20 46.30 3.67
3619 11161 7.933577 ACACGTGAGATTATCATGATATGGTTT 59.066 33.333 25.01 1.84 46.30 3.27
3712 11254 1.981254 CTTGCGAAATCATTTGGCGT 58.019 45.000 11.94 0.00 45.78 5.68
3713 11255 1.913403 CTTGCGAAATCATTTGGCGTC 59.087 47.619 11.94 0.00 45.78 5.19
3715 11257 0.451783 GCGAAATCATTTGGCGTCCT 59.548 50.000 0.93 0.00 34.77 3.85
3722 11265 6.469782 AAATCATTTGGCGTCCTTTCATAT 57.530 33.333 0.00 0.00 0.00 1.78
3725 11268 2.051334 TTGGCGTCCTTTCATATGGG 57.949 50.000 2.13 0.00 0.00 4.00
3739 11282 3.967326 TCATATGGGGAGTTTCGATGAGT 59.033 43.478 2.13 0.00 0.00 3.41
3745 11288 2.028020 GGGAGTTTCGATGAGTCCTTGT 60.028 50.000 17.76 0.00 36.92 3.16
3747 11290 3.555168 GGAGTTTCGATGAGTCCTTGTGT 60.555 47.826 13.31 0.00 34.43 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.134431 CCCCTGCTGTGCAAACTTTTT 60.134 47.619 0.00 0.00 38.41 1.94
132 133 0.465287 CCCCTGCTGTGCAAACTTTT 59.535 50.000 0.00 0.00 38.41 2.27
133 134 0.396974 TCCCCTGCTGTGCAAACTTT 60.397 50.000 0.00 0.00 38.41 2.66
134 135 0.825010 CTCCCCTGCTGTGCAAACTT 60.825 55.000 0.00 0.00 38.41 2.66
135 136 1.228367 CTCCCCTGCTGTGCAAACT 60.228 57.895 0.00 0.00 38.41 2.66
136 137 2.270986 CCTCCCCTGCTGTGCAAAC 61.271 63.158 0.00 0.00 38.41 2.93
137 138 2.115910 CCTCCCCTGCTGTGCAAA 59.884 61.111 0.00 0.00 38.41 3.68
138 139 3.970410 CCCTCCCCTGCTGTGCAA 61.970 66.667 0.00 0.00 38.41 4.08
141 142 1.852157 TTTAGCCCTCCCCTGCTGTG 61.852 60.000 0.00 0.00 38.52 3.66
142 143 1.140134 TTTTAGCCCTCCCCTGCTGT 61.140 55.000 0.00 0.00 38.52 4.40
143 144 0.259938 ATTTTAGCCCTCCCCTGCTG 59.740 55.000 0.00 0.00 38.52 4.41
146 147 3.052869 ACCTTAATTTTAGCCCTCCCCTG 60.053 47.826 0.00 0.00 0.00 4.45
147 148 3.207318 ACCTTAATTTTAGCCCTCCCCT 58.793 45.455 0.00 0.00 0.00 4.79
148 149 3.682592 ACCTTAATTTTAGCCCTCCCC 57.317 47.619 0.00 0.00 0.00 4.81
150 151 3.132289 GCCAACCTTAATTTTAGCCCTCC 59.868 47.826 0.00 0.00 0.00 4.30
154 155 7.447374 AAAATTGCCAACCTTAATTTTAGCC 57.553 32.000 0.00 0.00 40.33 3.93
158 159 9.752228 ATGGATAAAATTGCCAACCTTAATTTT 57.248 25.926 0.00 0.00 42.93 1.82
162 163 6.441924 TCCATGGATAAAATTGCCAACCTTAA 59.558 34.615 11.44 0.00 34.95 1.85
168 169 6.071447 CGGATATCCATGGATAAAATTGCCAA 60.071 38.462 32.95 13.00 40.07 4.52
171 172 6.404734 GGTCGGATATCCATGGATAAAATTGC 60.405 42.308 32.95 21.96 40.07 3.56
180 181 2.398754 ACAGGTCGGATATCCATGGA 57.601 50.000 18.88 18.88 35.14 3.41
203 204 4.837860 TCAAAAGCATATCCAAACCCTGTT 59.162 37.500 0.00 0.00 0.00 3.16
249 250 3.256136 CCTACTCATGAGTAATCGGGTCC 59.744 52.174 30.30 0.00 42.72 4.46
266 267 4.413520 ACAAGATTATGTCCATGCCCTACT 59.586 41.667 0.00 0.00 0.00 2.57
535 538 3.053170 AGGAGGAGTAAGAAGAGGAGACC 60.053 52.174 0.00 0.00 0.00 3.85
580 583 1.410517 CATGGAGGTAGCGACTGACAT 59.589 52.381 0.00 0.00 0.00 3.06
667 670 4.456222 TGTGTGAAAAACAAAGACGGAAGA 59.544 37.500 0.00 0.00 41.57 2.87
669 672 4.768130 TGTGTGAAAAACAAAGACGGAA 57.232 36.364 0.00 0.00 41.57 4.30
869 873 8.047911 TCGGGTTGAACAACTTAAATCCATATA 58.952 33.333 15.60 0.00 40.94 0.86
899 905 1.379843 ATGGCAATGGGTCGGGTTC 60.380 57.895 0.00 0.00 0.00 3.62
925 931 0.324275 GGGTGAGCCAGCCCATTTTA 60.324 55.000 11.14 0.00 45.22 1.52
927 933 2.037847 GGGTGAGCCAGCCCATTT 59.962 61.111 11.14 0.00 45.22 2.32
950 956 0.532640 TATATGCACAGGCGCACAGG 60.533 55.000 10.83 0.00 46.56 4.00
951 957 1.516161 ATATATGCACAGGCGCACAG 58.484 50.000 10.83 0.00 46.56 3.66
953 959 3.804325 CCTATATATATGCACAGGCGCAC 59.196 47.826 10.83 0.00 46.56 5.34
955 961 3.069586 TCCCTATATATATGCACAGGCGC 59.930 47.826 0.00 0.00 45.35 6.53
957 963 6.000219 CCAATCCCTATATATATGCACAGGC 59.000 44.000 5.44 0.00 41.68 4.85
958 964 7.220030 GTCCAATCCCTATATATATGCACAGG 58.780 42.308 5.44 4.15 0.00 4.00
960 966 6.609616 TCGTCCAATCCCTATATATATGCACA 59.390 38.462 5.44 0.00 0.00 4.57
961 967 7.050970 TCGTCCAATCCCTATATATATGCAC 57.949 40.000 5.44 0.00 0.00 4.57
962 968 6.239317 GCTCGTCCAATCCCTATATATATGCA 60.239 42.308 5.44 0.00 0.00 3.96
964 970 7.290110 TGCTCGTCCAATCCCTATATATATG 57.710 40.000 5.44 0.00 0.00 1.78
966 972 5.302059 GCTGCTCGTCCAATCCCTATATATA 59.698 44.000 0.00 0.00 0.00 0.86
968 974 3.447586 GCTGCTCGTCCAATCCCTATATA 59.552 47.826 0.00 0.00 0.00 0.86
969 975 2.234908 GCTGCTCGTCCAATCCCTATAT 59.765 50.000 0.00 0.00 0.00 0.86
973 979 2.249413 CTGCTGCTCGTCCAATCCCT 62.249 60.000 0.00 0.00 0.00 4.20
974 980 1.817099 CTGCTGCTCGTCCAATCCC 60.817 63.158 0.00 0.00 0.00 3.85
1043 1049 0.242825 CCAAGCGACTCCGTTACAGA 59.757 55.000 0.00 0.00 38.24 3.41
1060 1066 7.118680 GTGATATTTCTTCAAACTTACGTCCCA 59.881 37.037 0.00 0.00 0.00 4.37
1077 1083 9.962783 AGAAGGTTATGTACTACGTGATATTTC 57.037 33.333 0.00 0.00 0.00 2.17
1078 1084 9.962783 GAGAAGGTTATGTACTACGTGATATTT 57.037 33.333 0.00 0.00 0.00 1.40
1081 1087 7.285566 AGGAGAAGGTTATGTACTACGTGATA 58.714 38.462 0.00 0.00 0.00 2.15
1084 1090 5.831702 AGGAGAAGGTTATGTACTACGTG 57.168 43.478 0.00 0.00 0.00 4.49
1085 1091 7.944729 TTTAGGAGAAGGTTATGTACTACGT 57.055 36.000 0.00 0.00 0.00 3.57
1155 3432 0.517316 GATCGCGTCTGCAAAGGTTT 59.483 50.000 5.77 0.00 42.97 3.27
1175 3455 1.413382 CATCTTCCGATCTGTAGCGC 58.587 55.000 0.00 0.00 31.79 5.92
1434 3736 2.037847 GCAAACATGGGCTCCCCT 59.962 61.111 1.89 0.00 45.70 4.79
1628 4144 0.244450 CAAATTGCACACGGCCAGAT 59.756 50.000 2.24 0.00 43.89 2.90
1829 9348 2.755655 CTGGACGAGAACATGTAGAGGT 59.244 50.000 0.00 0.00 0.00 3.85
1935 9455 0.957395 AATGCACCTTGCCACGAGAG 60.957 55.000 0.00 0.00 44.23 3.20
2131 9651 3.003480 GCCACGTTGAGATCTTTAGCTT 58.997 45.455 0.00 0.00 0.00 3.74
2144 9664 2.995466 ATTGTCATCTTGCCACGTTG 57.005 45.000 0.00 0.00 0.00 4.10
2145 9665 4.323417 TCTTATTGTCATCTTGCCACGTT 58.677 39.130 0.00 0.00 0.00 3.99
2306 9826 7.255277 CGATGTAAATCTGTCTCTGACTATCCA 60.255 40.741 0.00 0.00 33.15 3.41
2474 9994 6.915843 CGTTTTTGTGCCTAAACTCAACTTAT 59.084 34.615 0.00 0.00 33.24 1.73
2480 10000 3.242478 CGTCGTTTTTGTGCCTAAACTCA 60.242 43.478 0.00 0.00 33.24 3.41
2522 10042 7.888021 ACACCCAAATATGACAATAACAGAAGA 59.112 33.333 0.00 0.00 0.00 2.87
2523 10043 8.055279 ACACCCAAATATGACAATAACAGAAG 57.945 34.615 0.00 0.00 0.00 2.85
2526 10046 7.035004 CCAACACCCAAATATGACAATAACAG 58.965 38.462 0.00 0.00 0.00 3.16
2527 10047 6.071108 CCCAACACCCAAATATGACAATAACA 60.071 38.462 0.00 0.00 0.00 2.41
2531 10056 4.222588 CACCCAACACCCAAATATGACAAT 59.777 41.667 0.00 0.00 0.00 2.71
2543 10068 0.250553 TCACGATTCACCCAACACCC 60.251 55.000 0.00 0.00 0.00 4.61
2546 10071 2.422597 GTGATCACGATTCACCCAACA 58.577 47.619 10.69 0.00 0.00 3.33
2581 10117 4.314740 TCATGTTGGGCAAAACAAGTAC 57.685 40.909 8.76 0.00 42.98 2.73
2615 10151 8.714906 TCCTTAAAATAGACCTAGCTAAGCATT 58.285 33.333 0.00 0.00 0.00 3.56
2751 10289 7.665145 TCACAGTGATGATTTCCTCAACATTTA 59.335 33.333 0.00 0.00 38.70 1.40
2795 10333 8.849543 AACTAAAACCTACCATCTAGTCCATA 57.150 34.615 0.00 0.00 0.00 2.74
2827 10365 0.179176 CTTCTCTCACACTCGAGGCG 60.179 60.000 18.41 10.01 33.59 5.52
2860 10398 6.757237 TCATGGTGCAGTTGTGAAAATTAAT 58.243 32.000 0.00 0.00 0.00 1.40
2922 10460 1.285641 GGTTGCAACCGTCATGTGG 59.714 57.895 31.73 5.37 39.66 4.17
2950 10488 1.597663 GACAACTCAAGAACACGGTGG 59.402 52.381 13.48 0.00 0.00 4.61
2952 10490 1.208535 TGGACAACTCAAGAACACGGT 59.791 47.619 0.00 0.00 0.00 4.83
2954 10492 2.276201 TGTGGACAACTCAAGAACACG 58.724 47.619 0.00 0.00 0.00 4.49
2962 10500 2.689083 CACGCTTGTGGACAACTCA 58.311 52.632 0.00 0.00 40.03 3.41
2978 10516 1.094785 ATAATCACCTGTTGCGCCAC 58.905 50.000 4.18 4.28 0.00 5.01
2997 10535 6.775939 GATGAAAATACTCATCGCTGATCA 57.224 37.500 0.00 0.00 41.65 2.92
3034 10572 3.594603 TTGGCTGACTAGAACTAGTGC 57.405 47.619 17.54 14.81 45.63 4.40
3052 10590 5.801947 CGCCTTATTTTGTCTTCCTTGATTG 59.198 40.000 0.00 0.00 0.00 2.67
3118 10658 8.647143 TCATTTCATCTTTTTCTTTTGGTGAC 57.353 30.769 0.00 0.00 0.00 3.67
3169 10710 7.234661 AGGCTAGGCTAATTAATCAGAGTAC 57.765 40.000 18.73 0.00 0.00 2.73
3173 10714 8.368668 GTTTCTAGGCTAGGCTAATTAATCAGA 58.631 37.037 24.63 15.56 0.00 3.27
3191 10733 6.402550 CCGAGTGAATCATTGTTGTTTCTAGG 60.403 42.308 0.00 0.00 34.19 3.02
3215 10757 5.044558 GTGTTCTAGCTAGCATTAGTGACC 58.955 45.833 18.83 0.00 0.00 4.02
3216 10758 5.897050 AGTGTTCTAGCTAGCATTAGTGAC 58.103 41.667 18.83 13.30 0.00 3.67
3219 10761 8.239038 TCATAAGTGTTCTAGCTAGCATTAGT 57.761 34.615 18.83 0.00 0.00 2.24
3237 10779 9.606631 CCTTCTATCTTTGTTTAGCTCATAAGT 57.393 33.333 0.00 0.00 0.00 2.24
3248 10790 4.455877 CGAGTTGCCCTTCTATCTTTGTTT 59.544 41.667 0.00 0.00 0.00 2.83
3249 10791 4.003648 CGAGTTGCCCTTCTATCTTTGTT 58.996 43.478 0.00 0.00 0.00 2.83
3252 10794 3.118592 CCTCGAGTTGCCCTTCTATCTTT 60.119 47.826 12.31 0.00 0.00 2.52
3255 10797 1.757699 ACCTCGAGTTGCCCTTCTATC 59.242 52.381 12.31 0.00 0.00 2.08
3262 10804 0.460987 CATCTGACCTCGAGTTGCCC 60.461 60.000 12.31 0.00 0.00 5.36
3272 10814 1.606531 GGCTTCCAGCATCTGACCT 59.393 57.895 0.00 0.00 44.75 3.85
3282 10824 2.359975 GTCCCCAACGGCTTCCAG 60.360 66.667 0.00 0.00 0.00 3.86
3285 10827 1.749258 GATGGTCCCCAACGGCTTC 60.749 63.158 0.00 0.00 36.95 3.86
3293 10835 1.371467 AACTGTCATGATGGTCCCCA 58.629 50.000 0.00 0.00 38.19 4.96
3296 10838 3.914426 ACCTAACTGTCATGATGGTCC 57.086 47.619 0.00 0.00 0.00 4.46
3297 10839 4.142600 GCAAACCTAACTGTCATGATGGTC 60.143 45.833 0.00 0.00 0.00 4.02
3298 10840 3.758554 GCAAACCTAACTGTCATGATGGT 59.241 43.478 0.00 0.00 0.00 3.55
3299 10841 3.129287 GGCAAACCTAACTGTCATGATGG 59.871 47.826 0.00 0.00 0.00 3.51
3300 10842 3.758023 TGGCAAACCTAACTGTCATGATG 59.242 43.478 0.00 0.00 36.63 3.07
3301 10843 4.012374 CTGGCAAACCTAACTGTCATGAT 58.988 43.478 0.00 0.00 36.63 2.45
3302 10844 3.072330 TCTGGCAAACCTAACTGTCATGA 59.928 43.478 0.00 0.00 36.63 3.07
3303 10845 3.411446 TCTGGCAAACCTAACTGTCATG 58.589 45.455 0.00 0.00 36.63 3.07
3304 10846 3.679389 CTCTGGCAAACCTAACTGTCAT 58.321 45.455 0.00 0.00 36.63 3.06
3305 10847 2.810400 GCTCTGGCAAACCTAACTGTCA 60.810 50.000 0.00 0.00 38.54 3.58
3306 10848 1.807142 GCTCTGGCAAACCTAACTGTC 59.193 52.381 0.00 0.00 38.54 3.51
3307 10849 1.878102 CGCTCTGGCAAACCTAACTGT 60.878 52.381 0.00 0.00 38.60 3.55
3308 10850 0.798776 CGCTCTGGCAAACCTAACTG 59.201 55.000 0.00 0.00 38.60 3.16
3309 10851 0.321653 CCGCTCTGGCAAACCTAACT 60.322 55.000 0.00 0.00 38.60 2.24
3310 10852 0.321298 TCCGCTCTGGCAAACCTAAC 60.321 55.000 0.00 0.00 38.60 2.34
3311 10853 0.398696 TTCCGCTCTGGCAAACCTAA 59.601 50.000 0.00 0.00 38.60 2.69
3312 10854 0.036388 CTTCCGCTCTGGCAAACCTA 60.036 55.000 0.00 0.00 38.60 3.08
3313 10855 1.302832 CTTCCGCTCTGGCAAACCT 60.303 57.895 0.00 0.00 38.60 3.50
3314 10856 0.678048 ATCTTCCGCTCTGGCAAACC 60.678 55.000 0.00 0.00 38.60 3.27
3315 10857 0.729690 GATCTTCCGCTCTGGCAAAC 59.270 55.000 0.00 0.00 38.60 2.93
3316 10858 0.324614 TGATCTTCCGCTCTGGCAAA 59.675 50.000 0.00 0.00 38.60 3.68
3317 10859 0.324614 TTGATCTTCCGCTCTGGCAA 59.675 50.000 0.00 0.00 38.60 4.52
3318 10860 0.324614 TTTGATCTTCCGCTCTGGCA 59.675 50.000 0.00 0.00 38.60 4.92
3319 10861 1.453155 TTTTGATCTTCCGCTCTGGC 58.547 50.000 0.00 0.00 37.80 4.85
3320 10862 5.528690 TCATTATTTTGATCTTCCGCTCTGG 59.471 40.000 0.00 0.00 40.09 3.86
3321 10863 6.609237 TCATTATTTTGATCTTCCGCTCTG 57.391 37.500 0.00 0.00 0.00 3.35
3322 10864 6.261826 CCTTCATTATTTTGATCTTCCGCTCT 59.738 38.462 0.00 0.00 0.00 4.09
3323 10865 6.433766 CCTTCATTATTTTGATCTTCCGCTC 58.566 40.000 0.00 0.00 0.00 5.03
3324 10866 5.300286 CCCTTCATTATTTTGATCTTCCGCT 59.700 40.000 0.00 0.00 0.00 5.52
3325 10867 5.507985 CCCCTTCATTATTTTGATCTTCCGC 60.508 44.000 0.00 0.00 0.00 5.54
3326 10868 5.010012 CCCCCTTCATTATTTTGATCTTCCG 59.990 44.000 0.00 0.00 0.00 4.30
3327 10869 6.410942 CCCCCTTCATTATTTTGATCTTCC 57.589 41.667 0.00 0.00 0.00 3.46
3347 10889 0.326618 TCCCTTCACTCATCTCCCCC 60.327 60.000 0.00 0.00 0.00 5.40
3348 10890 1.488393 CTTCCCTTCACTCATCTCCCC 59.512 57.143 0.00 0.00 0.00 4.81
3349 10891 1.488393 CCTTCCCTTCACTCATCTCCC 59.512 57.143 0.00 0.00 0.00 4.30
3350 10892 1.134250 GCCTTCCCTTCACTCATCTCC 60.134 57.143 0.00 0.00 0.00 3.71
3351 10893 1.472376 CGCCTTCCCTTCACTCATCTC 60.472 57.143 0.00 0.00 0.00 2.75
3352 10894 0.539051 CGCCTTCCCTTCACTCATCT 59.461 55.000 0.00 0.00 0.00 2.90
3353 10895 0.462759 CCGCCTTCCCTTCACTCATC 60.463 60.000 0.00 0.00 0.00 2.92
3354 10896 0.909610 TCCGCCTTCCCTTCACTCAT 60.910 55.000 0.00 0.00 0.00 2.90
3355 10897 1.535444 TCCGCCTTCCCTTCACTCA 60.535 57.895 0.00 0.00 0.00 3.41
3356 10898 1.219393 CTCCGCCTTCCCTTCACTC 59.781 63.158 0.00 0.00 0.00 3.51
3357 10899 2.294078 CCTCCGCCTTCCCTTCACT 61.294 63.158 0.00 0.00 0.00 3.41
3358 10900 2.269241 CCTCCGCCTTCCCTTCAC 59.731 66.667 0.00 0.00 0.00 3.18
3359 10901 2.203938 ACCTCCGCCTTCCCTTCA 60.204 61.111 0.00 0.00 0.00 3.02
3360 10902 1.838073 TTCACCTCCGCCTTCCCTTC 61.838 60.000 0.00 0.00 0.00 3.46
3361 10903 1.208165 ATTCACCTCCGCCTTCCCTT 61.208 55.000 0.00 0.00 0.00 3.95
3362 10904 1.616628 ATTCACCTCCGCCTTCCCT 60.617 57.895 0.00 0.00 0.00 4.20
3363 10905 1.452108 CATTCACCTCCGCCTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
3364 10906 0.744771 GTCATTCACCTCCGCCTTCC 60.745 60.000 0.00 0.00 0.00 3.46
3365 10907 0.036388 TGTCATTCACCTCCGCCTTC 60.036 55.000 0.00 0.00 0.00 3.46
3366 10908 0.620556 ATGTCATTCACCTCCGCCTT 59.379 50.000 0.00 0.00 0.00 4.35
3367 10909 0.107508 CATGTCATTCACCTCCGCCT 60.108 55.000 0.00 0.00 0.00 5.52
3368 10910 1.097547 CCATGTCATTCACCTCCGCC 61.098 60.000 0.00 0.00 0.00 6.13
3369 10911 1.718757 GCCATGTCATTCACCTCCGC 61.719 60.000 0.00 0.00 0.00 5.54
3370 10912 1.431488 CGCCATGTCATTCACCTCCG 61.431 60.000 0.00 0.00 0.00 4.63
3371 10913 0.107703 TCGCCATGTCATTCACCTCC 60.108 55.000 0.00 0.00 0.00 4.30
3372 10914 1.009829 GTCGCCATGTCATTCACCTC 58.990 55.000 0.00 0.00 0.00 3.85
3373 10915 0.392998 GGTCGCCATGTCATTCACCT 60.393 55.000 0.00 0.00 0.00 4.00
3374 10916 0.676466 TGGTCGCCATGTCATTCACC 60.676 55.000 0.00 0.00 0.00 4.02
3375 10917 0.729116 CTGGTCGCCATGTCATTCAC 59.271 55.000 0.00 0.00 30.82 3.18
3376 10918 0.392863 CCTGGTCGCCATGTCATTCA 60.393 55.000 0.00 0.00 30.82 2.57
3377 10919 1.097547 CCCTGGTCGCCATGTCATTC 61.098 60.000 0.00 0.00 30.82 2.67
3378 10920 1.077501 CCCTGGTCGCCATGTCATT 60.078 57.895 0.00 0.00 30.82 2.57
3379 10921 2.591753 CCCTGGTCGCCATGTCAT 59.408 61.111 0.00 0.00 30.82 3.06
3380 10922 3.716195 CCCCTGGTCGCCATGTCA 61.716 66.667 0.00 0.00 30.82 3.58
3383 10925 3.944250 AAAGCCCCTGGTCGCCATG 62.944 63.158 0.00 0.00 30.82 3.66
3384 10926 3.645268 GAAAGCCCCTGGTCGCCAT 62.645 63.158 0.00 0.00 30.82 4.40
3385 10927 4.344865 GAAAGCCCCTGGTCGCCA 62.345 66.667 0.00 0.00 0.00 5.69
3387 10929 4.344865 TGGAAAGCCCCTGGTCGC 62.345 66.667 0.00 0.00 0.00 5.19
3388 10930 2.045926 CTGGAAAGCCCCTGGTCG 60.046 66.667 0.00 0.00 0.00 4.79
3389 10931 2.361737 GCTGGAAAGCCCCTGGTC 60.362 66.667 0.00 0.00 0.00 4.02
3390 10932 3.185203 TGCTGGAAAGCCCCTGGT 61.185 61.111 0.00 0.00 0.00 4.00
3391 10933 2.362120 CTGCTGGAAAGCCCCTGG 60.362 66.667 0.00 0.00 0.00 4.45
3392 10934 2.362120 CCTGCTGGAAAGCCCCTG 60.362 66.667 2.92 0.00 34.57 4.45
3393 10935 3.665971 CCCTGCTGGAAAGCCCCT 61.666 66.667 11.88 0.00 35.39 4.79
3394 10936 3.661648 TCCCTGCTGGAAAGCCCC 61.662 66.667 11.88 0.00 41.40 5.80
3401 10943 2.606587 GCTCCCTTTCCCTGCTGGA 61.607 63.158 11.88 0.66 43.18 3.86
3402 10944 2.044551 GCTCCCTTTCCCTGCTGG 60.045 66.667 1.89 1.89 0.00 4.85
3403 10945 0.964358 CTTGCTCCCTTTCCCTGCTG 60.964 60.000 0.00 0.00 0.00 4.41
3404 10946 1.381851 CTTGCTCCCTTTCCCTGCT 59.618 57.895 0.00 0.00 0.00 4.24
3405 10947 1.680314 CCTTGCTCCCTTTCCCTGC 60.680 63.158 0.00 0.00 0.00 4.85
3406 10948 0.627986 ATCCTTGCTCCCTTTCCCTG 59.372 55.000 0.00 0.00 0.00 4.45
3407 10949 2.131023 CTATCCTTGCTCCCTTTCCCT 58.869 52.381 0.00 0.00 0.00 4.20
3408 10950 2.127708 TCTATCCTTGCTCCCTTTCCC 58.872 52.381 0.00 0.00 0.00 3.97
3409 10951 3.933861 TTCTATCCTTGCTCCCTTTCC 57.066 47.619 0.00 0.00 0.00 3.13
3410 10952 4.097135 GCTTTTCTATCCTTGCTCCCTTTC 59.903 45.833 0.00 0.00 0.00 2.62
3411 10953 4.019858 GCTTTTCTATCCTTGCTCCCTTT 58.980 43.478 0.00 0.00 0.00 3.11
3412 10954 3.010584 TGCTTTTCTATCCTTGCTCCCTT 59.989 43.478 0.00 0.00 0.00 3.95
3413 10955 2.578021 TGCTTTTCTATCCTTGCTCCCT 59.422 45.455 0.00 0.00 0.00 4.20
3414 10956 2.685388 GTGCTTTTCTATCCTTGCTCCC 59.315 50.000 0.00 0.00 0.00 4.30
3415 10957 3.127721 GTGTGCTTTTCTATCCTTGCTCC 59.872 47.826 0.00 0.00 0.00 4.70
3416 10958 3.181516 CGTGTGCTTTTCTATCCTTGCTC 60.182 47.826 0.00 0.00 0.00 4.26
3417 10959 2.744202 CGTGTGCTTTTCTATCCTTGCT 59.256 45.455 0.00 0.00 0.00 3.91
3418 10960 2.159517 CCGTGTGCTTTTCTATCCTTGC 60.160 50.000 0.00 0.00 0.00 4.01
3419 10961 2.420022 CCCGTGTGCTTTTCTATCCTTG 59.580 50.000 0.00 0.00 0.00 3.61
3420 10962 2.039879 ACCCGTGTGCTTTTCTATCCTT 59.960 45.455 0.00 0.00 0.00 3.36
3421 10963 1.628846 ACCCGTGTGCTTTTCTATCCT 59.371 47.619 0.00 0.00 0.00 3.24
3422 10964 1.737793 CACCCGTGTGCTTTTCTATCC 59.262 52.381 0.00 0.00 35.31 2.59
3423 10965 1.737793 CCACCCGTGTGCTTTTCTATC 59.262 52.381 0.00 0.00 41.35 2.08
3424 10966 1.073284 ACCACCCGTGTGCTTTTCTAT 59.927 47.619 0.00 0.00 41.35 1.98
3425 10967 0.470766 ACCACCCGTGTGCTTTTCTA 59.529 50.000 0.00 0.00 41.35 2.10
3426 10968 1.101049 CACCACCCGTGTGCTTTTCT 61.101 55.000 0.00 0.00 41.35 2.52
3427 10969 1.358759 CACCACCCGTGTGCTTTTC 59.641 57.895 0.00 0.00 41.35 2.29
3428 10970 2.124693 CCACCACCCGTGTGCTTTT 61.125 57.895 0.00 0.00 41.26 2.27
3429 10971 2.518349 CCACCACCCGTGTGCTTT 60.518 61.111 0.00 0.00 41.26 3.51
3430 10972 4.579384 CCCACCACCCGTGTGCTT 62.579 66.667 0.00 0.00 41.26 3.91
3432 10974 4.572571 TTCCCACCACCCGTGTGC 62.573 66.667 0.00 0.00 41.26 4.57
3433 10975 2.190841 GTTTCCCACCACCCGTGTG 61.191 63.158 0.00 0.00 41.26 3.82
3434 10976 2.193786 GTTTCCCACCACCCGTGT 59.806 61.111 0.00 0.00 41.26 4.49
3435 10977 2.975799 CGTTTCCCACCACCCGTG 60.976 66.667 0.00 0.00 42.62 4.94
3436 10978 4.259131 CCGTTTCCCACCACCCGT 62.259 66.667 0.00 0.00 0.00 5.28
3438 10980 3.562732 CTCCCGTTTCCCACCACCC 62.563 68.421 0.00 0.00 0.00 4.61
3439 10981 2.033602 CTCCCGTTTCCCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
3440 10982 2.033602 CCTCCCGTTTCCCACCAC 59.966 66.667 0.00 0.00 0.00 4.16
3441 10983 3.253838 CCCTCCCGTTTCCCACCA 61.254 66.667 0.00 0.00 0.00 4.17
3442 10984 2.931649 TCCCTCCCGTTTCCCACC 60.932 66.667 0.00 0.00 0.00 4.61
3443 10985 2.350134 GTCCCTCCCGTTTCCCAC 59.650 66.667 0.00 0.00 0.00 4.61
3444 10986 3.315949 CGTCCCTCCCGTTTCCCA 61.316 66.667 0.00 0.00 0.00 4.37
3445 10987 2.517484 CTTCGTCCCTCCCGTTTCCC 62.517 65.000 0.00 0.00 0.00 3.97
3446 10988 1.079336 CTTCGTCCCTCCCGTTTCC 60.079 63.158 0.00 0.00 0.00 3.13
3447 10989 1.079336 CCTTCGTCCCTCCCGTTTC 60.079 63.158 0.00 0.00 0.00 2.78
3448 10990 1.534717 TCCTTCGTCCCTCCCGTTT 60.535 57.895 0.00 0.00 0.00 3.60
3449 10991 2.118951 TCCTTCGTCCCTCCCGTT 59.881 61.111 0.00 0.00 0.00 4.44
3450 10992 2.679287 GTCCTTCGTCCCTCCCGT 60.679 66.667 0.00 0.00 0.00 5.28
3451 10993 3.823330 CGTCCTTCGTCCCTCCCG 61.823 72.222 0.00 0.00 34.52 5.14
3460 11002 3.678717 ATGGCGTCGACGTCCTTCG 62.679 63.158 36.46 12.50 44.42 3.79
3461 11003 0.179156 TAATGGCGTCGACGTCCTTC 60.179 55.000 36.46 20.44 44.42 3.46
3462 11004 0.244450 TTAATGGCGTCGACGTCCTT 59.756 50.000 36.46 33.05 44.42 3.36
3463 11005 0.244450 TTTAATGGCGTCGACGTCCT 59.756 50.000 36.46 26.30 44.42 3.85
3464 11006 0.367887 GTTTAATGGCGTCGACGTCC 59.632 55.000 36.46 33.48 44.42 4.79
3465 11007 0.367887 GGTTTAATGGCGTCGACGTC 59.632 55.000 33.98 33.98 45.40 4.34
3466 11008 0.319727 TGGTTTAATGGCGTCGACGT 60.320 50.000 35.48 20.43 42.22 4.34
3467 11009 0.368907 CTGGTTTAATGGCGTCGACG 59.631 55.000 32.57 32.57 43.27 5.12
3468 11010 1.127951 CACTGGTTTAATGGCGTCGAC 59.872 52.381 5.18 5.18 0.00 4.20
3469 11011 1.001068 TCACTGGTTTAATGGCGTCGA 59.999 47.619 0.00 0.00 0.00 4.20
3470 11012 1.393539 CTCACTGGTTTAATGGCGTCG 59.606 52.381 0.00 0.00 0.00 5.12
3471 11013 1.130561 GCTCACTGGTTTAATGGCGTC 59.869 52.381 0.00 0.00 0.00 5.19
3472 11014 1.165270 GCTCACTGGTTTAATGGCGT 58.835 50.000 0.00 0.00 0.00 5.68
3473 11015 1.398390 GAGCTCACTGGTTTAATGGCG 59.602 52.381 9.40 0.00 0.00 5.69
3474 11016 1.745653 GGAGCTCACTGGTTTAATGGC 59.254 52.381 17.19 0.00 0.00 4.40
3475 11017 3.012518 CTGGAGCTCACTGGTTTAATGG 58.987 50.000 17.19 0.00 0.00 3.16
3476 11018 3.679389 ACTGGAGCTCACTGGTTTAATG 58.321 45.455 17.19 0.00 0.00 1.90
3477 11019 4.373156 AACTGGAGCTCACTGGTTTAAT 57.627 40.909 17.19 0.00 0.00 1.40
3478 11020 3.857157 AACTGGAGCTCACTGGTTTAA 57.143 42.857 17.19 0.00 0.00 1.52
3479 11021 3.857157 AAACTGGAGCTCACTGGTTTA 57.143 42.857 17.19 0.00 0.00 2.01
3480 11022 2.736670 AAACTGGAGCTCACTGGTTT 57.263 45.000 17.19 15.79 0.00 3.27
3481 11023 2.736670 AAAACTGGAGCTCACTGGTT 57.263 45.000 17.19 10.79 0.00 3.67
3482 11024 2.736670 AAAAACTGGAGCTCACTGGT 57.263 45.000 17.19 4.98 0.00 4.00
3501 11043 5.663158 ATATAAGGGCTAGGAGGCAAAAA 57.337 39.130 2.24 0.00 43.44 1.94
3502 11044 5.385198 CAATATAAGGGCTAGGAGGCAAAA 58.615 41.667 2.24 0.00 43.44 2.44
3503 11045 4.202567 CCAATATAAGGGCTAGGAGGCAAA 60.203 45.833 2.24 0.00 43.44 3.68
3504 11046 3.330701 CCAATATAAGGGCTAGGAGGCAA 59.669 47.826 2.24 0.00 43.44 4.52
3505 11047 2.912956 CCAATATAAGGGCTAGGAGGCA 59.087 50.000 2.24 0.00 43.44 4.75
3506 11048 2.913617 ACCAATATAAGGGCTAGGAGGC 59.086 50.000 0.00 0.00 40.51 4.70
3507 11049 5.590818 TCTACCAATATAAGGGCTAGGAGG 58.409 45.833 0.00 0.00 0.00 4.30
3508 11050 7.741554 AATCTACCAATATAAGGGCTAGGAG 57.258 40.000 0.00 0.00 0.00 3.69
3509 11051 8.520119 AAAATCTACCAATATAAGGGCTAGGA 57.480 34.615 0.00 0.00 0.00 2.94
3534 11076 4.862371 ACCATAGCCGATTCCCTTAAAAA 58.138 39.130 0.00 0.00 0.00 1.94
3535 11077 4.513406 ACCATAGCCGATTCCCTTAAAA 57.487 40.909 0.00 0.00 0.00 1.52
3536 11078 4.204012 CAACCATAGCCGATTCCCTTAAA 58.796 43.478 0.00 0.00 0.00 1.52
3537 11079 3.201266 ACAACCATAGCCGATTCCCTTAA 59.799 43.478 0.00 0.00 0.00 1.85
3538 11080 2.775384 ACAACCATAGCCGATTCCCTTA 59.225 45.455 0.00 0.00 0.00 2.69
3539 11081 1.564348 ACAACCATAGCCGATTCCCTT 59.436 47.619 0.00 0.00 0.00 3.95
3540 11082 1.213296 ACAACCATAGCCGATTCCCT 58.787 50.000 0.00 0.00 0.00 4.20
3541 11083 1.676006 CAACAACCATAGCCGATTCCC 59.324 52.381 0.00 0.00 0.00 3.97
3542 11084 2.365582 ACAACAACCATAGCCGATTCC 58.634 47.619 0.00 0.00 0.00 3.01
3543 11085 5.510671 CATTACAACAACCATAGCCGATTC 58.489 41.667 0.00 0.00 0.00 2.52
3544 11086 4.202010 GCATTACAACAACCATAGCCGATT 60.202 41.667 0.00 0.00 0.00 3.34
3545 11087 3.315191 GCATTACAACAACCATAGCCGAT 59.685 43.478 0.00 0.00 0.00 4.18
3546 11088 2.680841 GCATTACAACAACCATAGCCGA 59.319 45.455 0.00 0.00 0.00 5.54
3547 11089 2.682856 AGCATTACAACAACCATAGCCG 59.317 45.455 0.00 0.00 0.00 5.52
3583 11125 7.599171 TGATAATCTCACGTGTCACTCTTTAA 58.401 34.615 16.51 0.00 0.00 1.52
3592 11134 7.093354 ACCATATCATGATAATCTCACGTGTC 58.907 38.462 19.03 4.99 36.48 3.67
3597 11139 8.627208 ACCAAACCATATCATGATAATCTCAC 57.373 34.615 19.03 0.00 36.48 3.51
3683 11225 0.819582 ATTTCGCAAGCCAATGAGGG 59.180 50.000 0.00 0.00 38.09 4.30
3712 11254 3.778075 TCGAAACTCCCCATATGAAAGGA 59.222 43.478 3.65 6.60 0.00 3.36
3713 11255 4.150897 TCGAAACTCCCCATATGAAAGG 57.849 45.455 3.65 2.15 0.00 3.11
3715 11257 5.104527 ACTCATCGAAACTCCCCATATGAAA 60.105 40.000 3.65 0.00 0.00 2.69
3722 11265 0.902531 GGACTCATCGAAACTCCCCA 59.097 55.000 0.00 0.00 0.00 4.96
3725 11268 2.996621 CACAAGGACTCATCGAAACTCC 59.003 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.