Multiple sequence alignment - TraesCS6B01G400500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G400500 chr6B 100.000 3068 0 0 1 3068 676035358 676038425 0.000000e+00 5666.0
1 TraesCS6B01G400500 chr6B 84.228 894 81 21 730 1592 676047011 676047875 0.000000e+00 815.0
2 TraesCS6B01G400500 chr6B 80.217 1016 104 45 612 1587 675702996 675702038 0.000000e+00 673.0
3 TraesCS6B01G400500 chr6B 82.891 754 53 26 2174 2870 676048350 676049084 2.620000e-170 608.0
4 TraesCS6B01G400500 chr6B 87.603 363 35 9 1720 2077 675672785 675672428 2.200000e-111 412.0
5 TraesCS6B01G400500 chr6B 80.762 525 56 25 1114 1608 676136406 676136915 4.830000e-98 368.0
6 TraesCS6B01G400500 chr6B 76.442 815 84 51 848 1607 675568712 675567951 2.930000e-90 342.0
7 TraesCS6B01G400500 chr6B 79.558 543 50 30 1676 2183 675701908 675701392 6.340000e-87 331.0
8 TraesCS6B01G400500 chr6B 79.908 433 39 21 2486 2870 675701176 675700744 1.080000e-69 274.0
9 TraesCS6B01G400500 chr6B 84.906 265 21 13 1719 1974 676536733 676536479 1.830000e-62 250.0
10 TraesCS6B01G400500 chr6B 84.677 248 28 9 2585 2822 675667346 675667099 3.950000e-59 239.0
11 TraesCS6B01G400500 chr6B 86.869 198 10 5 2103 2297 675672332 675672148 1.110000e-49 207.0
12 TraesCS6B01G400500 chr6B 79.091 330 40 12 66 381 676045757 676046071 1.870000e-47 200.0
13 TraesCS6B01G400500 chr6B 81.369 263 27 13 1734 1989 678091777 678091530 8.680000e-46 195.0
14 TraesCS6B01G400500 chr6B 88.415 164 13 5 282 440 675569085 675568923 3.120000e-45 193.0
15 TraesCS6B01G400500 chr6B 81.452 248 22 15 1724 1960 675612815 675612581 6.760000e-42 182.0
16 TraesCS6B01G400500 chr6B 86.585 164 16 5 282 440 676135782 676135944 3.140000e-40 176.0
17 TraesCS6B01G400500 chr6B 86.567 67 9 0 70 136 677337789 677337723 1.180000e-09 75.0
18 TraesCS6B01G400500 chr6B 90.909 55 2 3 97 151 676868977 676868926 1.530000e-08 71.3
19 TraesCS6B01G400500 chr6B 85.294 68 9 1 70 136 678093493 678093426 5.490000e-08 69.4
20 TraesCS6B01G400500 chr6D 84.000 1625 145 44 771 2308 446881996 446883592 0.000000e+00 1454.0
21 TraesCS6B01G400500 chr6D 83.634 666 88 14 945 1590 446728195 446727531 9.410000e-170 606.0
22 TraesCS6B01G400500 chr6D 77.938 834 99 39 1676 2453 446727415 446726611 2.810000e-120 442.0
23 TraesCS6B01G400500 chr6D 81.579 532 77 13 1017 1548 446814736 446815246 1.320000e-113 420.0
24 TraesCS6B01G400500 chr6D 79.107 560 57 25 1083 1607 446948445 446948979 6.340000e-87 331.0
25 TraesCS6B01G400500 chr6D 84.416 231 16 9 2660 2870 446883839 446884069 3.100000e-50 209.0
26 TraesCS6B01G400500 chr6D 80.657 274 23 21 1720 1986 446903155 446903405 5.220000e-43 185.0
27 TraesCS6B01G400500 chr6D 81.008 258 23 10 1738 1986 447762008 447762248 6.760000e-42 182.0
28 TraesCS6B01G400500 chr6D 83.500 200 24 5 497 687 446881258 446881457 8.740000e-41 178.0
29 TraesCS6B01G400500 chr6D 87.117 163 11 4 282 440 446947898 446948054 3.140000e-40 176.0
30 TraesCS6B01G400500 chr6D 94.595 111 6 0 314 424 447214566 447214456 4.070000e-39 172.0
31 TraesCS6B01G400500 chr6D 82.967 182 11 9 2709 2870 446726382 446726201 2.470000e-31 147.0
32 TraesCS6B01G400500 chr6D 92.857 98 7 0 66 163 446880682 446880779 3.190000e-30 143.0
33 TraesCS6B01G400500 chr6D 74.255 369 46 26 576 903 446728562 446728202 3.230000e-20 110.0
34 TraesCS6B01G400500 chr6D 81.119 143 16 6 336 478 446728795 446728664 1.500000e-18 104.0
35 TraesCS6B01G400500 chr6D 96.491 57 0 1 730 786 446881930 446881984 3.260000e-15 93.5
36 TraesCS6B01G400500 chr6A 82.835 1573 166 50 792 2308 593732562 593734086 0.000000e+00 1314.0
37 TraesCS6B01G400500 chr6A 85.562 658 50 19 945 1590 593562438 593561814 0.000000e+00 647.0
38 TraesCS6B01G400500 chr6A 81.875 480 72 7 1112 1588 593574315 593574782 1.030000e-104 390.0
39 TraesCS6B01G400500 chr6A 82.013 467 72 6 1082 1548 593682461 593682915 1.330000e-103 387.0
40 TraesCS6B01G400500 chr6A 76.803 832 83 45 1672 2444 593561702 593560922 1.740000e-97 366.0
41 TraesCS6B01G400500 chr6A 83.575 414 31 19 2486 2870 593734236 593734641 1.350000e-93 353.0
42 TraesCS6B01G400500 chr6A 78.418 607 61 36 1035 1604 593792260 593792833 6.340000e-87 331.0
43 TraesCS6B01G400500 chr6A 88.372 258 26 2 541 795 593732032 593732288 1.070000e-79 307.0
44 TraesCS6B01G400500 chr6A 85.333 225 20 5 1732 1952 594366538 594366753 1.430000e-53 220.0
45 TraesCS6B01G400500 chr6A 83.843 229 16 12 1734 1960 593929009 593928800 6.710000e-47 198.0
46 TraesCS6B01G400500 chr6A 79.856 278 21 16 1727 1986 593777904 593778164 1.460000e-38 171.0
47 TraesCS6B01G400500 chr6A 85.714 168 15 3 273 440 593791732 593791890 5.260000e-38 169.0
48 TraesCS6B01G400500 chr6A 82.249 169 18 6 270 438 593776397 593776553 5.340000e-28 135.0
49 TraesCS6B01G400500 chr6A 93.478 46 2 1 181 226 593574000 593574044 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G400500 chr6B 676035358 676038425 3067 False 5666.0 5666 100.000000 1 3068 1 chr6B.!!$F1 3067
1 TraesCS6B01G400500 chr6B 676045757 676049084 3327 False 541.0 815 82.070000 66 2870 3 chr6B.!!$F2 2804
2 TraesCS6B01G400500 chr6B 675700744 675702996 2252 True 426.0 673 79.894333 612 2870 3 chr6B.!!$R8 2258
3 TraesCS6B01G400500 chr6B 675672148 675672785 637 True 309.5 412 87.236000 1720 2297 2 chr6B.!!$R7 577
4 TraesCS6B01G400500 chr6B 676135782 676136915 1133 False 272.0 368 83.673500 282 1608 2 chr6B.!!$F3 1326
5 TraesCS6B01G400500 chr6B 675567951 675569085 1134 True 267.5 342 82.428500 282 1607 2 chr6B.!!$R6 1325
6 TraesCS6B01G400500 chr6D 446814736 446815246 510 False 420.0 420 81.579000 1017 1548 1 chr6D.!!$F1 531
7 TraesCS6B01G400500 chr6D 446880682 446884069 3387 False 415.5 1454 88.252800 66 2870 5 chr6D.!!$F4 2804
8 TraesCS6B01G400500 chr6D 446726201 446728795 2594 True 281.8 606 79.982600 336 2870 5 chr6D.!!$R2 2534
9 TraesCS6B01G400500 chr6D 446947898 446948979 1081 False 253.5 331 83.112000 282 1607 2 chr6D.!!$F5 1325
10 TraesCS6B01G400500 chr6A 593732032 593734641 2609 False 658.0 1314 84.927333 541 2870 3 chr6A.!!$F4 2329
11 TraesCS6B01G400500 chr6A 593560922 593562438 1516 True 506.5 647 81.182500 945 2444 2 chr6A.!!$R2 1499
12 TraesCS6B01G400500 chr6A 593791732 593792833 1101 False 250.0 331 82.066000 273 1604 2 chr6A.!!$F6 1331
13 TraesCS6B01G400500 chr6A 593574000 593574782 782 False 228.8 390 87.676500 181 1588 2 chr6A.!!$F3 1407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 547 0.034337 TTTCTGGGACCGTCCTTTCG 59.966 55.0 17.27 3.97 36.57 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 4108 0.32121 CCCAACGCATCCAGTGTACA 60.321 55.0 0.0 0.0 40.86 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.612725 AAGGACAAAAGGCATGAAAAAGA 57.387 34.783 0.00 0.00 0.00 2.52
23 24 5.612725 AGGACAAAAGGCATGAAAAAGAA 57.387 34.783 0.00 0.00 0.00 2.52
24 25 5.988287 AGGACAAAAGGCATGAAAAAGAAA 58.012 33.333 0.00 0.00 0.00 2.52
25 26 6.051074 AGGACAAAAGGCATGAAAAAGAAAG 58.949 36.000 0.00 0.00 0.00 2.62
26 27 5.237127 GGACAAAAGGCATGAAAAAGAAAGG 59.763 40.000 0.00 0.00 0.00 3.11
27 28 5.988287 ACAAAAGGCATGAAAAAGAAAGGA 58.012 33.333 0.00 0.00 0.00 3.36
28 29 6.413892 ACAAAAGGCATGAAAAAGAAAGGAA 58.586 32.000 0.00 0.00 0.00 3.36
29 30 6.539826 ACAAAAGGCATGAAAAAGAAAGGAAG 59.460 34.615 0.00 0.00 0.00 3.46
30 31 6.484364 AAAGGCATGAAAAAGAAAGGAAGA 57.516 33.333 0.00 0.00 0.00 2.87
31 32 5.718724 AGGCATGAAAAAGAAAGGAAGAG 57.281 39.130 0.00 0.00 0.00 2.85
32 33 5.388654 AGGCATGAAAAAGAAAGGAAGAGA 58.611 37.500 0.00 0.00 0.00 3.10
33 34 5.476254 AGGCATGAAAAAGAAAGGAAGAGAG 59.524 40.000 0.00 0.00 0.00 3.20
34 35 5.474876 GGCATGAAAAAGAAAGGAAGAGAGA 59.525 40.000 0.00 0.00 0.00 3.10
35 36 6.377780 GCATGAAAAAGAAAGGAAGAGAGAC 58.622 40.000 0.00 0.00 0.00 3.36
36 37 6.016777 GCATGAAAAAGAAAGGAAGAGAGACA 60.017 38.462 0.00 0.00 0.00 3.41
37 38 7.583230 CATGAAAAAGAAAGGAAGAGAGACAG 58.417 38.462 0.00 0.00 0.00 3.51
38 39 6.889198 TGAAAAAGAAAGGAAGAGAGACAGA 58.111 36.000 0.00 0.00 0.00 3.41
39 40 6.763610 TGAAAAAGAAAGGAAGAGAGACAGAC 59.236 38.462 0.00 0.00 0.00 3.51
40 41 4.513198 AAGAAAGGAAGAGAGACAGACG 57.487 45.455 0.00 0.00 0.00 4.18
41 42 2.823154 AGAAAGGAAGAGAGACAGACGG 59.177 50.000 0.00 0.00 0.00 4.79
42 43 0.892063 AAGGAAGAGAGACAGACGGC 59.108 55.000 0.00 0.00 0.00 5.68
43 44 0.039035 AGGAAGAGAGACAGACGGCT 59.961 55.000 0.00 0.00 0.00 5.52
45 46 0.172352 GAAGAGAGACAGACGGCTGG 59.828 60.000 24.99 4.51 46.60 4.85
46 47 0.251386 AAGAGAGACAGACGGCTGGA 60.251 55.000 24.99 0.00 46.60 3.86
47 48 0.963355 AGAGAGACAGACGGCTGGAC 60.963 60.000 24.99 16.22 46.60 4.02
48 49 2.179517 GAGACAGACGGCTGGACG 59.820 66.667 24.99 0.00 46.60 4.79
49 50 3.343788 GAGACAGACGGCTGGACGG 62.344 68.421 24.99 0.00 46.60 4.79
50 51 4.436998 GACAGACGGCTGGACGGG 62.437 72.222 24.99 0.00 46.60 5.28
57 58 4.329545 GGCTGGACGGGCAGTGAA 62.330 66.667 0.00 0.00 0.00 3.18
58 59 2.281484 GCTGGACGGGCAGTGAAA 60.281 61.111 0.00 0.00 0.00 2.69
59 60 2.328099 GCTGGACGGGCAGTGAAAG 61.328 63.158 0.00 0.00 0.00 2.62
60 61 1.371183 CTGGACGGGCAGTGAAAGA 59.629 57.895 0.00 0.00 0.00 2.52
61 62 0.671781 CTGGACGGGCAGTGAAAGAG 60.672 60.000 0.00 0.00 0.00 2.85
62 63 1.118965 TGGACGGGCAGTGAAAGAGA 61.119 55.000 0.00 0.00 0.00 3.10
63 64 0.670854 GGACGGGCAGTGAAAGAGAC 60.671 60.000 0.00 0.00 0.00 3.36
64 65 1.006102 ACGGGCAGTGAAAGAGACG 60.006 57.895 0.00 0.00 0.00 4.18
91 92 3.011032 AGAATCCAAGGAAAGCCAGATGT 59.989 43.478 0.00 0.00 36.29 3.06
93 94 3.350219 TCCAAGGAAAGCCAGATGTAC 57.650 47.619 0.00 0.00 36.29 2.90
95 96 2.290896 CCAAGGAAAGCCAGATGTACCA 60.291 50.000 0.00 0.00 36.29 3.25
107 108 4.314961 CAGATGTACCACAGTAGCAACAA 58.685 43.478 0.00 0.00 0.00 2.83
147 148 2.023414 ATCTTATCGCGGCGGAACCA 62.023 55.000 23.46 2.32 39.03 3.67
149 150 2.901051 CTTATCGCGGCGGAACCAGT 62.901 60.000 23.46 3.02 39.03 4.00
222 225 4.796231 CTTCCCGCGGACTCCACG 62.796 72.222 30.73 8.04 0.00 4.94
230 233 0.319641 GCGGACTCCACGAACTCTTT 60.320 55.000 0.00 0.00 0.00 2.52
235 238 3.367190 GGACTCCACGAACTCTTTCTACC 60.367 52.174 0.00 0.00 0.00 3.18
236 239 2.561858 ACTCCACGAACTCTTTCTACCC 59.438 50.000 0.00 0.00 0.00 3.69
237 240 1.897802 TCCACGAACTCTTTCTACCCC 59.102 52.381 0.00 0.00 0.00 4.95
241 244 4.324267 CACGAACTCTTTCTACCCCAAAT 58.676 43.478 0.00 0.00 0.00 2.32
249 252 2.519377 TCTACCCCAAATACATCGCG 57.481 50.000 0.00 0.00 0.00 5.87
252 255 2.922740 ACCCCAAATACATCGCGTAT 57.077 45.000 5.77 0.00 42.91 3.06
259 267 3.603158 AATACATCGCGTATATGGGCA 57.397 42.857 5.77 0.00 40.04 5.36
276 285 4.951254 TGGGCACGAATAAATATCTTCGA 58.049 39.130 17.01 0.00 45.31 3.71
331 343 3.792047 CGCCGATGCCACTGTGTG 61.792 66.667 7.08 0.00 0.00 3.82
347 364 0.827925 TGTGGAGCGTTCAGAGGTCT 60.828 55.000 0.53 0.00 36.47 3.85
367 384 2.016165 CCGCGTTTCAAGCAAAGCC 61.016 57.895 4.92 0.00 34.19 4.35
443 489 0.904649 ATGTCGATCAGGTCCTGCAA 59.095 50.000 14.64 0.00 0.00 4.08
450 496 1.194781 TCAGGTCCTGCAACCCTCTC 61.195 60.000 14.64 0.00 40.42 3.20
500 547 0.034337 TTTCTGGGACCGTCCTTTCG 59.966 55.000 17.27 3.97 36.57 3.46
604 985 0.106708 TGGATCGGCATTGCTCCTAC 59.893 55.000 14.42 2.64 0.00 3.18
607 995 0.767375 ATCGGCATTGCTCCTACCAT 59.233 50.000 8.82 0.00 0.00 3.55
641 1029 5.037825 AAGAGAAACTTACGCATCAGTGCA 61.038 41.667 1.08 0.00 43.32 4.57
651 1039 2.070262 CATCAGTGCAGTTCAGACGA 57.930 50.000 0.00 0.00 0.00 4.20
674 1063 7.325180 CGAAAACCGTTCGTATGTTAAGATAG 58.675 38.462 0.43 0.00 37.18 2.08
705 1586 7.938563 ATGAAGAGTAGCGAGATATTTTGTC 57.061 36.000 0.00 0.00 0.00 3.18
763 1645 5.350633 CAAGAAATTGACCAGCACTTTGAA 58.649 37.500 0.00 0.00 30.53 2.69
764 1646 5.596836 AGAAATTGACCAGCACTTTGAAA 57.403 34.783 0.00 0.00 30.53 2.69
799 1987 1.202976 AGCAAGTTGGCATGAGTCCTT 60.203 47.619 4.75 0.00 35.83 3.36
801 1989 2.421424 GCAAGTTGGCATGAGTCCTTAG 59.579 50.000 4.75 0.00 0.00 2.18
804 1992 4.851639 AGTTGGCATGAGTCCTTAGAAT 57.148 40.909 0.00 0.00 0.00 2.40
806 1994 6.506538 AGTTGGCATGAGTCCTTAGAATAT 57.493 37.500 0.00 0.00 0.00 1.28
838 2059 1.561542 ACCTACCTGCCTTGAATCCTG 59.438 52.381 0.00 0.00 0.00 3.86
839 2060 1.839994 CCTACCTGCCTTGAATCCTGA 59.160 52.381 0.00 0.00 0.00 3.86
840 2061 2.239654 CCTACCTGCCTTGAATCCTGAA 59.760 50.000 0.00 0.00 0.00 3.02
841 2062 3.117738 CCTACCTGCCTTGAATCCTGAAT 60.118 47.826 0.00 0.00 0.00 2.57
842 2063 3.010200 ACCTGCCTTGAATCCTGAATC 57.990 47.619 0.00 0.00 0.00 2.52
843 2064 2.305009 CCTGCCTTGAATCCTGAATCC 58.695 52.381 0.00 0.00 0.00 3.01
844 2065 2.305009 CTGCCTTGAATCCTGAATCCC 58.695 52.381 0.00 0.00 0.00 3.85
1001 2252 1.302511 GCCAACCCGCTTCTCTCAA 60.303 57.895 0.00 0.00 0.00 3.02
1073 2361 2.513026 ATTCCAACTGCTCGCGCTCT 62.513 55.000 5.56 0.00 36.97 4.09
1075 2363 3.540014 CAACTGCTCGCGCTCTCG 61.540 66.667 5.56 0.00 36.97 4.04
1076 2364 3.738246 AACTGCTCGCGCTCTCGA 61.738 61.111 5.56 0.00 38.10 4.04
1077 2365 3.057547 AACTGCTCGCGCTCTCGAT 62.058 57.895 5.56 0.00 37.87 3.59
1078 2366 2.725450 CTGCTCGCGCTCTCGATC 60.725 66.667 5.56 0.00 37.87 3.69
1079 2367 3.179869 CTGCTCGCGCTCTCGATCT 62.180 63.158 5.56 0.00 37.87 2.75
1080 2368 2.426752 GCTCGCGCTCTCGATCTC 60.427 66.667 5.56 0.00 37.87 2.75
1081 2369 2.251075 CTCGCGCTCTCGATCTCC 59.749 66.667 5.56 0.00 37.87 3.71
1098 2421 2.721355 TCTCCCTCTATCTCTCATGGCT 59.279 50.000 0.00 0.00 0.00 4.75
1099 2422 2.827322 CTCCCTCTATCTCTCATGGCTG 59.173 54.545 0.00 0.00 0.00 4.85
1104 2427 1.345089 CTATCTCTCATGGCTGCAGCT 59.655 52.381 35.82 16.94 41.70 4.24
1119 2443 0.818296 CAGCTACTACAAGTCGGCCT 59.182 55.000 0.00 0.00 30.81 5.19
1278 2692 1.079612 CTGCATGTGCTCCTCGACA 60.080 57.895 6.55 0.00 42.66 4.35
1287 2701 2.058675 CTCCTCGACAAACCACCCT 58.941 57.895 0.00 0.00 0.00 4.34
1378 2841 4.201679 CGCCGTCCATCCGCAGTA 62.202 66.667 0.00 0.00 0.00 2.74
1379 2842 2.279517 GCCGTCCATCCGCAGTAG 60.280 66.667 0.00 0.00 0.00 2.57
1380 2843 2.279517 CCGTCCATCCGCAGTAGC 60.280 66.667 0.00 0.00 37.42 3.58
1381 2844 2.786495 CCGTCCATCCGCAGTAGCT 61.786 63.158 0.00 0.00 39.10 3.32
1382 2845 1.589993 CGTCCATCCGCAGTAGCTG 60.590 63.158 0.00 0.00 39.10 4.24
1407 2870 2.590007 GGCTCGAAGCGCATGGAT 60.590 61.111 11.47 0.00 41.79 3.41
1557 3026 1.535462 CCAGGCGACAACCAGTAAAAG 59.465 52.381 0.00 0.00 0.00 2.27
1560 3029 2.876550 AGGCGACAACCAGTAAAAGAAC 59.123 45.455 0.00 0.00 0.00 3.01
1683 3236 7.093112 ACTGGTCAATTTAGATAGAGTGAGCTT 60.093 37.037 10.14 0.00 35.20 3.74
1694 3247 0.321021 AGTGAGCTTGTCCTCTGCTG 59.679 55.000 0.00 0.00 37.16 4.41
1697 3250 0.319728 GAGCTTGTCCTCTGCTGTCA 59.680 55.000 0.00 0.00 37.16 3.58
1709 3262 1.195448 CTGCTGTCAGCGGTGTAAAAG 59.805 52.381 23.34 7.71 46.26 2.27
1786 3376 1.115467 ATCTGATCTGTCCCGTGACC 58.885 55.000 0.00 0.00 41.01 4.02
1827 3417 0.030504 TGATTTGTGTGCCGCAACAG 59.969 50.000 0.00 0.00 33.44 3.16
1846 3448 2.871263 GCTTTCTGCTCTCGTTTCTG 57.129 50.000 0.00 0.00 38.95 3.02
1847 3449 2.139118 GCTTTCTGCTCTCGTTTCTGT 58.861 47.619 0.00 0.00 38.95 3.41
1848 3450 2.545946 GCTTTCTGCTCTCGTTTCTGTT 59.454 45.455 0.00 0.00 38.95 3.16
1849 3451 3.363477 GCTTTCTGCTCTCGTTTCTGTTC 60.363 47.826 0.00 0.00 38.95 3.18
1870 3472 2.880890 CCTGTTTCTGTTTCTGGAGTGG 59.119 50.000 0.00 0.00 0.00 4.00
1871 3473 3.433598 CCTGTTTCTGTTTCTGGAGTGGA 60.434 47.826 0.00 0.00 0.00 4.02
1872 3474 4.392940 CTGTTTCTGTTTCTGGAGTGGAT 58.607 43.478 0.00 0.00 0.00 3.41
1873 3475 4.136796 TGTTTCTGTTTCTGGAGTGGATG 58.863 43.478 0.00 0.00 0.00 3.51
1874 3476 2.479566 TCTGTTTCTGGAGTGGATGC 57.520 50.000 0.00 0.00 0.00 3.91
1875 3477 1.699083 TCTGTTTCTGGAGTGGATGCA 59.301 47.619 0.00 0.00 0.00 3.96
1889 3495 1.685148 GATGCAGATCCCCTGTTTCC 58.315 55.000 0.00 0.00 44.71 3.13
1917 3524 1.610363 TAAGCTCCGCGAGAGATCAT 58.390 50.000 23.26 9.60 46.50 2.45
1990 3603 2.107141 GAACGGATCAGGCGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
2005 3621 4.941309 GGGGAAACACGCACGGGT 62.941 66.667 0.00 0.00 0.00 5.28
2015 3631 2.264794 GCACGGGTCGGTTCTGAT 59.735 61.111 0.00 0.00 0.00 2.90
2027 3643 5.168569 GTCGGTTCTGATGAGATTTGTGTA 58.831 41.667 0.00 0.00 0.00 2.90
2051 3667 9.181805 GTAAGAACTTTCATGATCGAATCGATA 57.818 33.333 18.75 7.59 47.00 2.92
2064 3680 7.920682 TGATCGAATCGATAAATGAACTGAGAA 59.079 33.333 18.75 0.00 47.00 2.87
2079 3740 9.909644 ATGAACTGAGAATTTTTCTTCTTCATG 57.090 29.630 12.45 0.00 40.87 3.07
2080 3741 7.864379 TGAACTGAGAATTTTTCTTCTTCATGC 59.136 33.333 0.00 0.00 40.87 4.06
2086 3747 4.488126 TTTTTCTTCTTCATGCTCGTGG 57.512 40.909 0.00 0.00 0.00 4.94
2100 3764 2.157085 GCTCGTGGTACTTTACTGTTGC 59.843 50.000 0.00 0.00 0.00 4.17
2150 3836 1.684248 GCAAGAAGATGATGGTGGGCT 60.684 52.381 0.00 0.00 0.00 5.19
2151 3837 2.295885 CAAGAAGATGATGGTGGGCTC 58.704 52.381 0.00 0.00 0.00 4.70
2152 3838 0.467384 AGAAGATGATGGTGGGCTCG 59.533 55.000 0.00 0.00 0.00 5.03
2153 3839 1.153086 AAGATGATGGTGGGCTCGC 60.153 57.895 0.00 0.00 0.00 5.03
2154 3840 1.913951 AAGATGATGGTGGGCTCGCA 61.914 55.000 0.00 0.00 0.00 5.10
2190 3920 4.919754 GCCAGCTTCTTGTTTAATCAGTTG 59.080 41.667 0.00 0.00 0.00 3.16
2206 3936 0.310854 GTTGTGTTTCTTGGCCGGAG 59.689 55.000 5.05 0.00 0.00 4.63
2249 3979 2.947652 CACTTATCAGTTGGCTCCCATG 59.052 50.000 0.00 0.00 31.53 3.66
2251 3981 3.209410 CTTATCAGTTGGCTCCCATGTC 58.791 50.000 0.00 0.00 31.53 3.06
2252 3982 0.257039 ATCAGTTGGCTCCCATGTCC 59.743 55.000 0.00 0.00 31.53 4.02
2271 4001 5.223655 TGTCCCATCTCCCTATCAAATACA 58.776 41.667 0.00 0.00 0.00 2.29
2300 4030 6.971527 TCTTTTGCTTAACGATCCGAATAA 57.028 33.333 0.00 0.00 0.00 1.40
2309 4045 7.276658 GCTTAACGATCCGAATAATGATCATCT 59.723 37.037 9.06 2.33 37.77 2.90
2344 4108 1.893137 TGAGAACCGCTGTCTGTGTAT 59.107 47.619 0.00 0.00 0.00 2.29
2376 4160 2.470821 GCGTTGGGCATGTAGTACTAG 58.529 52.381 1.87 0.00 42.87 2.57
2377 4161 2.802057 GCGTTGGGCATGTAGTACTAGG 60.802 54.545 1.87 0.00 42.87 3.02
2378 4162 2.691526 CGTTGGGCATGTAGTACTAGGA 59.308 50.000 1.87 0.00 0.00 2.94
2379 4163 3.243434 CGTTGGGCATGTAGTACTAGGAG 60.243 52.174 1.87 0.00 0.00 3.69
2380 4164 3.682592 TGGGCATGTAGTACTAGGAGT 57.317 47.619 1.87 0.00 0.00 3.85
2381 4165 3.990369 TGGGCATGTAGTACTAGGAGTT 58.010 45.455 1.87 0.00 0.00 3.01
2409 4193 1.623311 AGCAAAATAACCAAGTGGGGC 59.377 47.619 1.69 0.00 42.91 5.80
2418 4202 2.362120 AAGTGGGGCTGCTGATGC 60.362 61.111 0.00 0.00 40.20 3.91
2430 4214 3.129988 GCTGCTGATGCTGGAATAAAGTT 59.870 43.478 0.00 0.00 40.48 2.66
2446 4234 7.307219 GGAATAAAGTTCTCGTTGAATATCCGG 60.307 40.741 0.00 0.00 36.99 5.14
2485 4273 8.596781 AACTGAATATCTGACTAGTTGGTACT 57.403 34.615 0.00 0.00 38.44 2.73
2486 4274 8.596781 ACTGAATATCTGACTAGTTGGTACTT 57.403 34.615 0.00 0.00 35.78 2.24
2508 4296 6.698766 ACTTGGTAGTACGTTCTAACAAACTG 59.301 38.462 26.26 19.33 43.85 3.16
2512 4301 7.039784 TGGTAGTACGTTCTAACAAACTGGTAT 60.040 37.037 16.52 0.00 35.10 2.73
2535 4325 9.877178 GTATAATATCCACTTCCTAACCAGATG 57.123 37.037 0.00 0.00 0.00 2.90
2604 4419 2.158300 CACAAATGCTACGGACGCA 58.842 52.632 0.00 0.00 42.25 5.24
2611 4426 1.519455 GCTACGGACGCAAGCAGAT 60.519 57.895 12.83 0.00 45.62 2.90
2616 4431 0.095935 CGGACGCAAGCAGATGAAAG 59.904 55.000 0.00 0.00 45.62 2.62
2671 4494 2.997315 CAGAGTCACCCGGGCTGA 60.997 66.667 24.08 20.54 0.00 4.26
2692 4515 2.045926 ATCTGCCTGCCACGGAAC 60.046 61.111 0.00 0.00 0.00 3.62
2870 4777 2.125552 CGCCGCCAGTGAATCAGA 60.126 61.111 0.00 0.00 0.00 3.27
2871 4778 1.522355 CGCCGCCAGTGAATCAGAT 60.522 57.895 0.00 0.00 0.00 2.90
2872 4779 1.769098 CGCCGCCAGTGAATCAGATG 61.769 60.000 0.00 0.00 0.00 2.90
2873 4780 2.020131 CCGCCAGTGAATCAGATGC 58.980 57.895 0.00 0.00 0.00 3.91
2874 4781 1.442526 CCGCCAGTGAATCAGATGCC 61.443 60.000 0.00 0.00 0.00 4.40
2875 4782 1.769098 CGCCAGTGAATCAGATGCCG 61.769 60.000 0.00 0.00 0.00 5.69
2876 4783 1.442526 GCCAGTGAATCAGATGCCGG 61.443 60.000 0.00 0.00 0.00 6.13
2877 4784 0.816825 CCAGTGAATCAGATGCCGGG 60.817 60.000 2.18 0.00 0.00 5.73
2878 4785 1.153086 AGTGAATCAGATGCCGGGC 60.153 57.895 13.32 13.32 0.00 6.13
2879 4786 1.451927 GTGAATCAGATGCCGGGCA 60.452 57.895 26.11 26.11 44.86 5.36
2880 4787 1.451927 TGAATCAGATGCCGGGCAC 60.452 57.895 26.48 17.82 43.04 5.01
2881 4788 1.451927 GAATCAGATGCCGGGCACA 60.452 57.895 26.48 9.12 43.04 4.57
2882 4789 1.718757 GAATCAGATGCCGGGCACAC 61.719 60.000 26.48 20.69 43.04 3.82
2883 4790 3.704231 ATCAGATGCCGGGCACACC 62.704 63.158 26.48 16.26 43.04 4.16
2884 4791 4.720902 CAGATGCCGGGCACACCA 62.721 66.667 26.48 0.00 43.04 4.17
2885 4792 3.965258 AGATGCCGGGCACACCAA 61.965 61.111 26.48 0.00 43.04 3.67
2886 4793 2.755469 GATGCCGGGCACACCAAT 60.755 61.111 26.48 7.13 43.04 3.16
2887 4794 1.453015 GATGCCGGGCACACCAATA 60.453 57.895 26.48 0.00 43.04 1.90
2888 4795 1.724582 GATGCCGGGCACACCAATAC 61.725 60.000 26.48 4.86 43.04 1.89
2889 4796 2.360600 GCCGGGCACACCAATACA 60.361 61.111 15.62 0.00 40.22 2.29
2890 4797 1.752694 GCCGGGCACACCAATACAT 60.753 57.895 15.62 0.00 40.22 2.29
2891 4798 0.464735 GCCGGGCACACCAATACATA 60.465 55.000 15.62 0.00 40.22 2.29
2892 4799 1.817740 GCCGGGCACACCAATACATAT 60.818 52.381 15.62 0.00 40.22 1.78
2893 4800 2.151202 CCGGGCACACCAATACATATC 58.849 52.381 0.00 0.00 40.22 1.63
2894 4801 2.486370 CCGGGCACACCAATACATATCA 60.486 50.000 0.00 0.00 40.22 2.15
2895 4802 2.548057 CGGGCACACCAATACATATCAC 59.452 50.000 0.00 0.00 40.22 3.06
2896 4803 2.884639 GGGCACACCAATACATATCACC 59.115 50.000 0.00 0.00 39.85 4.02
2897 4804 3.435026 GGGCACACCAATACATATCACCT 60.435 47.826 0.00 0.00 39.85 4.00
2898 4805 3.565482 GGCACACCAATACATATCACCTG 59.435 47.826 0.00 0.00 35.26 4.00
2899 4806 4.199310 GCACACCAATACATATCACCTGT 58.801 43.478 0.00 0.00 0.00 4.00
2900 4807 4.035558 GCACACCAATACATATCACCTGTG 59.964 45.833 0.00 0.00 0.00 3.66
2901 4808 4.576053 CACACCAATACATATCACCTGTGG 59.424 45.833 0.00 0.00 0.00 4.17
2902 4809 3.565482 CACCAATACATATCACCTGTGGC 59.435 47.826 0.00 0.00 0.00 5.01
2903 4810 3.201930 ACCAATACATATCACCTGTGGCA 59.798 43.478 0.00 0.00 0.00 4.92
2904 4811 3.817084 CCAATACATATCACCTGTGGCAG 59.183 47.826 0.00 0.00 0.00 4.85
2905 4812 4.454678 CAATACATATCACCTGTGGCAGT 58.545 43.478 0.00 0.00 0.00 4.40
2906 4813 2.408271 ACATATCACCTGTGGCAGTG 57.592 50.000 0.00 0.00 0.00 3.66
2907 4814 1.065199 ACATATCACCTGTGGCAGTGG 60.065 52.381 5.64 5.01 0.00 4.00
2908 4815 0.107017 ATATCACCTGTGGCAGTGGC 60.107 55.000 10.30 10.30 40.13 5.01
2909 4816 2.520465 TATCACCTGTGGCAGTGGCG 62.520 60.000 12.58 0.00 42.47 5.69
2918 4825 3.807538 GCAGTGGCGGCATGACTG 61.808 66.667 17.19 18.80 40.14 3.51
2919 4826 2.359107 CAGTGGCGGCATGACTGT 60.359 61.111 17.19 0.00 33.77 3.55
2920 4827 2.046892 AGTGGCGGCATGACTGTC 60.047 61.111 17.19 0.00 0.00 3.51
2921 4828 2.358615 GTGGCGGCATGACTGTCA 60.359 61.111 17.19 13.60 36.74 3.58
2922 4829 2.046988 TGGCGGCATGACTGTCAG 60.047 61.111 16.46 9.32 33.13 3.51
2923 4830 2.046892 GGCGGCATGACTGTCAGT 60.047 61.111 16.46 4.81 0.00 3.41
2924 4831 1.672356 GGCGGCATGACTGTCAGTT 60.672 57.895 16.46 0.00 0.00 3.16
2925 4832 1.499056 GCGGCATGACTGTCAGTTG 59.501 57.895 16.46 11.35 0.00 3.16
2926 4833 1.915614 GCGGCATGACTGTCAGTTGG 61.916 60.000 16.46 6.94 0.00 3.77
2927 4834 1.878775 GGCATGACTGTCAGTTGGC 59.121 57.895 18.24 18.24 0.00 4.52
2928 4835 0.607489 GGCATGACTGTCAGTTGGCT 60.607 55.000 23.03 2.68 31.64 4.75
2929 4836 0.801251 GCATGACTGTCAGTTGGCTC 59.199 55.000 16.46 0.00 0.00 4.70
2930 4837 1.610102 GCATGACTGTCAGTTGGCTCT 60.610 52.381 16.46 0.00 0.00 4.09
2931 4838 2.074576 CATGACTGTCAGTTGGCTCTG 58.925 52.381 16.46 3.20 36.85 3.35
2932 4839 1.123077 TGACTGTCAGTTGGCTCTGT 58.877 50.000 7.00 0.00 36.85 3.41
2933 4840 1.486310 TGACTGTCAGTTGGCTCTGTT 59.514 47.619 7.00 0.00 36.85 3.16
2934 4841 2.139118 GACTGTCAGTTGGCTCTGTTC 58.861 52.381 7.00 6.02 36.85 3.18
2935 4842 1.765314 ACTGTCAGTTGGCTCTGTTCT 59.235 47.619 0.00 0.00 36.85 3.01
2936 4843 2.224161 ACTGTCAGTTGGCTCTGTTCTC 60.224 50.000 0.00 2.52 36.85 2.87
2937 4844 2.036992 CTGTCAGTTGGCTCTGTTCTCT 59.963 50.000 9.29 0.00 36.85 3.10
2938 4845 3.230976 TGTCAGTTGGCTCTGTTCTCTA 58.769 45.455 9.29 0.00 36.85 2.43
2939 4846 3.834813 TGTCAGTTGGCTCTGTTCTCTAT 59.165 43.478 9.29 0.00 36.85 1.98
2940 4847 4.081972 TGTCAGTTGGCTCTGTTCTCTATC 60.082 45.833 9.29 0.00 36.85 2.08
2941 4848 4.081972 GTCAGTTGGCTCTGTTCTCTATCA 60.082 45.833 9.29 0.00 36.85 2.15
2942 4849 4.528206 TCAGTTGGCTCTGTTCTCTATCAA 59.472 41.667 9.29 0.00 36.85 2.57
2943 4850 5.012046 TCAGTTGGCTCTGTTCTCTATCAAA 59.988 40.000 9.29 0.00 36.85 2.69
2944 4851 5.879223 CAGTTGGCTCTGTTCTCTATCAAAT 59.121 40.000 2.95 0.00 0.00 2.32
2945 4852 7.044181 CAGTTGGCTCTGTTCTCTATCAAATA 58.956 38.462 2.95 0.00 0.00 1.40
2946 4853 7.010923 CAGTTGGCTCTGTTCTCTATCAAATAC 59.989 40.741 2.95 0.00 0.00 1.89
2947 4854 6.544928 TGGCTCTGTTCTCTATCAAATACA 57.455 37.500 0.00 0.00 0.00 2.29
2948 4855 6.577103 TGGCTCTGTTCTCTATCAAATACAG 58.423 40.000 0.00 0.00 35.51 2.74
2949 4856 6.155221 TGGCTCTGTTCTCTATCAAATACAGT 59.845 38.462 0.00 0.00 35.64 3.55
2950 4857 6.478344 GGCTCTGTTCTCTATCAAATACAGTG 59.522 42.308 0.00 0.00 35.64 3.66
2951 4858 6.019156 GCTCTGTTCTCTATCAAATACAGTGC 60.019 42.308 0.00 0.00 42.20 4.40
2952 4859 6.341316 TCTGTTCTCTATCAAATACAGTGCC 58.659 40.000 0.00 0.00 35.64 5.01
2953 4860 6.155221 TCTGTTCTCTATCAAATACAGTGCCT 59.845 38.462 0.00 0.00 35.64 4.75
2954 4861 6.108687 TGTTCTCTATCAAATACAGTGCCTG 58.891 40.000 0.00 1.16 37.52 4.85
2955 4862 4.697514 TCTCTATCAAATACAGTGCCTGC 58.302 43.478 2.50 0.00 34.37 4.85
2956 4863 3.457234 TCTATCAAATACAGTGCCTGCG 58.543 45.455 2.50 0.00 34.37 5.18
2957 4864 1.382522 ATCAAATACAGTGCCTGCGG 58.617 50.000 2.50 0.00 34.37 5.69
2958 4865 0.036164 TCAAATACAGTGCCTGCGGT 59.964 50.000 2.50 0.00 34.37 5.68
2959 4866 0.168788 CAAATACAGTGCCTGCGGTG 59.831 55.000 2.50 0.00 34.37 4.94
2960 4867 1.586154 AAATACAGTGCCTGCGGTGC 61.586 55.000 2.50 0.00 34.37 5.01
2961 4868 2.469465 AATACAGTGCCTGCGGTGCT 62.469 55.000 7.40 0.00 34.37 4.40
2962 4869 2.859273 ATACAGTGCCTGCGGTGCTC 62.859 60.000 7.40 4.27 34.37 4.26
2966 4873 4.269523 TGCCTGCGGTGCTCCTTT 62.270 61.111 2.85 0.00 0.00 3.11
2967 4874 2.985847 GCCTGCGGTGCTCCTTTT 60.986 61.111 2.85 0.00 0.00 2.27
2968 4875 2.564721 GCCTGCGGTGCTCCTTTTT 61.565 57.895 2.85 0.00 0.00 1.94
2969 4876 1.581447 CCTGCGGTGCTCCTTTTTC 59.419 57.895 2.85 0.00 0.00 2.29
2970 4877 0.890996 CCTGCGGTGCTCCTTTTTCT 60.891 55.000 2.85 0.00 0.00 2.52
2971 4878 0.519077 CTGCGGTGCTCCTTTTTCTC 59.481 55.000 2.85 0.00 0.00 2.87
2972 4879 0.179032 TGCGGTGCTCCTTTTTCTCA 60.179 50.000 2.85 0.00 0.00 3.27
2973 4880 0.519077 GCGGTGCTCCTTTTTCTCAG 59.481 55.000 2.85 0.00 0.00 3.35
2974 4881 0.519077 CGGTGCTCCTTTTTCTCAGC 59.481 55.000 2.85 0.00 0.00 4.26
2975 4882 0.519077 GGTGCTCCTTTTTCTCAGCG 59.481 55.000 0.00 0.00 34.39 5.18
2976 4883 1.512926 GTGCTCCTTTTTCTCAGCGA 58.487 50.000 0.00 0.00 34.39 4.93
2977 4884 1.873591 GTGCTCCTTTTTCTCAGCGAA 59.126 47.619 0.00 0.00 34.39 4.70
2978 4885 1.873591 TGCTCCTTTTTCTCAGCGAAC 59.126 47.619 0.00 0.00 34.39 3.95
2979 4886 1.136224 GCTCCTTTTTCTCAGCGAACG 60.136 52.381 0.00 0.00 0.00 3.95
2980 4887 2.404215 CTCCTTTTTCTCAGCGAACGA 58.596 47.619 0.00 0.00 0.00 3.85
2981 4888 2.800544 CTCCTTTTTCTCAGCGAACGAA 59.199 45.455 0.00 0.00 0.00 3.85
2982 4889 3.199677 TCCTTTTTCTCAGCGAACGAAA 58.800 40.909 0.00 0.00 0.00 3.46
2983 4890 3.623960 TCCTTTTTCTCAGCGAACGAAAA 59.376 39.130 0.00 0.00 35.53 2.29
2984 4891 4.095185 TCCTTTTTCTCAGCGAACGAAAAA 59.905 37.500 13.94 13.94 41.57 1.94
2985 4892 4.976116 CCTTTTTCTCAGCGAACGAAAAAT 59.024 37.500 14.59 0.00 42.35 1.82
2986 4893 6.017770 TCCTTTTTCTCAGCGAACGAAAAATA 60.018 34.615 14.59 7.68 42.35 1.40
2987 4894 6.801862 CCTTTTTCTCAGCGAACGAAAAATAT 59.198 34.615 14.59 0.00 42.35 1.28
2988 4895 7.326063 CCTTTTTCTCAGCGAACGAAAAATATT 59.674 33.333 14.59 0.00 42.35 1.28
2989 4896 9.325150 CTTTTTCTCAGCGAACGAAAAATATTA 57.675 29.630 14.59 0.37 42.35 0.98
2990 4897 8.874745 TTTTCTCAGCGAACGAAAAATATTAG 57.125 30.769 0.00 0.00 34.72 1.73
2991 4898 7.591006 TTCTCAGCGAACGAAAAATATTAGT 57.409 32.000 0.00 0.00 0.00 2.24
2992 4899 6.989437 TCTCAGCGAACGAAAAATATTAGTG 58.011 36.000 0.00 0.00 0.00 2.74
2993 4900 6.588756 TCTCAGCGAACGAAAAATATTAGTGT 59.411 34.615 0.00 0.00 0.00 3.55
2994 4901 6.758149 TCAGCGAACGAAAAATATTAGTGTC 58.242 36.000 0.00 0.00 0.00 3.67
2995 4902 5.957796 CAGCGAACGAAAAATATTAGTGTCC 59.042 40.000 0.00 0.00 0.00 4.02
2996 4903 5.640357 AGCGAACGAAAAATATTAGTGTCCA 59.360 36.000 0.00 0.00 0.00 4.02
2997 4904 5.731263 GCGAACGAAAAATATTAGTGTCCAC 59.269 40.000 0.00 0.00 0.00 4.02
2998 4905 6.401796 GCGAACGAAAAATATTAGTGTCCACT 60.402 38.462 5.15 5.15 45.02 4.00
2999 4906 7.515643 CGAACGAAAAATATTAGTGTCCACTT 58.484 34.615 5.10 0.00 42.54 3.16
3000 4907 8.013378 CGAACGAAAAATATTAGTGTCCACTTT 58.987 33.333 5.10 0.00 42.54 2.66
3001 4908 9.673454 GAACGAAAAATATTAGTGTCCACTTTT 57.327 29.630 5.10 0.00 42.54 2.27
3002 4909 9.673454 AACGAAAAATATTAGTGTCCACTTTTC 57.327 29.630 5.10 7.43 42.54 2.29
3003 4910 8.842280 ACGAAAAATATTAGTGTCCACTTTTCA 58.158 29.630 5.10 0.00 42.54 2.69
3004 4911 9.329913 CGAAAAATATTAGTGTCCACTTTTCAG 57.670 33.333 5.10 2.69 42.54 3.02
3008 4915 9.739276 AAATATTAGTGTCCACTTTTCAGATGA 57.261 29.630 5.10 0.00 42.54 2.92
3009 4916 9.739276 AATATTAGTGTCCACTTTTCAGATGAA 57.261 29.630 5.10 0.00 42.54 2.57
3010 4917 6.861065 TTAGTGTCCACTTTTCAGATGAAC 57.139 37.500 5.10 0.00 42.54 3.18
3011 4918 3.809832 AGTGTCCACTTTTCAGATGAACG 59.190 43.478 0.00 0.00 38.83 3.95
3012 4919 3.807622 GTGTCCACTTTTCAGATGAACGA 59.192 43.478 0.00 0.00 33.13 3.85
3013 4920 4.272504 GTGTCCACTTTTCAGATGAACGAA 59.727 41.667 0.00 0.00 33.13 3.85
3014 4921 4.272504 TGTCCACTTTTCAGATGAACGAAC 59.727 41.667 0.00 0.00 33.13 3.95
3015 4922 3.493129 TCCACTTTTCAGATGAACGAACG 59.507 43.478 0.00 0.00 33.13 3.95
3016 4923 3.363970 CCACTTTTCAGATGAACGAACGG 60.364 47.826 0.00 0.00 33.13 4.44
3017 4924 3.493129 CACTTTTCAGATGAACGAACGGA 59.507 43.478 0.00 0.00 33.13 4.69
3018 4925 4.025229 CACTTTTCAGATGAACGAACGGAA 60.025 41.667 0.00 0.00 33.13 4.30
3019 4926 4.573201 ACTTTTCAGATGAACGAACGGAAA 59.427 37.500 0.00 0.00 33.13 3.13
3020 4927 5.065474 ACTTTTCAGATGAACGAACGGAAAA 59.935 36.000 0.00 0.00 36.20 2.29
3021 4928 5.682943 TTTCAGATGAACGAACGGAAAAT 57.317 34.783 0.00 0.00 33.13 1.82
3022 4929 6.788684 TTTCAGATGAACGAACGGAAAATA 57.211 33.333 0.00 0.00 33.13 1.40
3023 4930 6.978343 TTCAGATGAACGAACGGAAAATAT 57.022 33.333 0.00 0.00 0.00 1.28
3024 4931 6.583912 TCAGATGAACGAACGGAAAATATC 57.416 37.500 0.00 0.00 0.00 1.63
3025 4932 6.103330 TCAGATGAACGAACGGAAAATATCA 58.897 36.000 0.00 0.00 0.00 2.15
3026 4933 6.761242 TCAGATGAACGAACGGAAAATATCAT 59.239 34.615 0.00 0.00 0.00 2.45
3027 4934 7.279981 TCAGATGAACGAACGGAAAATATCATT 59.720 33.333 0.00 0.00 0.00 2.57
3028 4935 7.374228 CAGATGAACGAACGGAAAATATCATTG 59.626 37.037 0.00 0.00 0.00 2.82
3029 4936 5.328691 TGAACGAACGGAAAATATCATTGC 58.671 37.500 0.00 0.00 0.00 3.56
3030 4937 4.287238 ACGAACGGAAAATATCATTGCC 57.713 40.909 0.00 0.00 0.00 4.52
3031 4938 3.692101 ACGAACGGAAAATATCATTGCCA 59.308 39.130 0.00 0.00 0.00 4.92
3032 4939 4.201910 ACGAACGGAAAATATCATTGCCAG 60.202 41.667 0.00 0.00 0.00 4.85
3033 4940 4.610945 GAACGGAAAATATCATTGCCAGG 58.389 43.478 0.00 0.00 0.00 4.45
3034 4941 2.362077 ACGGAAAATATCATTGCCAGGC 59.638 45.455 3.66 3.66 0.00 4.85
3035 4942 2.361757 CGGAAAATATCATTGCCAGGCA 59.638 45.455 11.22 11.22 36.47 4.75
3036 4943 3.551454 CGGAAAATATCATTGCCAGGCAG 60.551 47.826 15.50 4.00 40.61 4.85
3037 4944 3.385755 GGAAAATATCATTGCCAGGCAGT 59.614 43.478 15.50 9.39 40.61 4.40
3038 4945 4.584325 GGAAAATATCATTGCCAGGCAGTA 59.416 41.667 15.50 0.04 40.61 2.74
3039 4946 5.244626 GGAAAATATCATTGCCAGGCAGTAT 59.755 40.000 15.50 11.84 40.61 2.12
3040 4947 6.434028 GGAAAATATCATTGCCAGGCAGTATA 59.566 38.462 15.50 13.60 40.61 1.47
3041 4948 7.362401 GGAAAATATCATTGCCAGGCAGTATAG 60.362 40.741 15.50 0.00 40.61 1.31
3042 4949 6.378661 AATATCATTGCCAGGCAGTATAGA 57.621 37.500 15.50 6.06 40.61 1.98
3043 4950 3.758755 TCATTGCCAGGCAGTATAGAG 57.241 47.619 15.50 0.00 40.61 2.43
3044 4951 2.149578 CATTGCCAGGCAGTATAGAGC 58.850 52.381 15.50 0.00 40.61 4.09
3045 4952 1.203237 TTGCCAGGCAGTATAGAGCA 58.797 50.000 15.50 0.00 40.61 4.26
3046 4953 1.427809 TGCCAGGCAGTATAGAGCAT 58.572 50.000 11.22 0.00 33.32 3.79
3047 4954 1.345741 TGCCAGGCAGTATAGAGCATC 59.654 52.381 11.22 0.00 33.32 3.91
3048 4955 3.023545 TGCCAGGCAGTATAGAGCATCT 61.024 50.000 11.22 0.00 41.10 2.90
3049 4956 4.877327 TGCCAGGCAGTATAGAGCATCTC 61.877 52.174 11.22 0.00 39.48 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.612725 TCTTTTTCATGCCTTTTGTCCTT 57.387 34.783 0.00 0.00 0.00 3.36
1 2 5.612725 TTCTTTTTCATGCCTTTTGTCCT 57.387 34.783 0.00 0.00 0.00 3.85
2 3 5.237127 CCTTTCTTTTTCATGCCTTTTGTCC 59.763 40.000 0.00 0.00 0.00 4.02
3 4 6.048509 TCCTTTCTTTTTCATGCCTTTTGTC 58.951 36.000 0.00 0.00 0.00 3.18
5 6 6.762661 TCTTCCTTTCTTTTTCATGCCTTTTG 59.237 34.615 0.00 0.00 0.00 2.44
6 7 6.888105 TCTTCCTTTCTTTTTCATGCCTTTT 58.112 32.000 0.00 0.00 0.00 2.27
7 8 6.324770 TCTCTTCCTTTCTTTTTCATGCCTTT 59.675 34.615 0.00 0.00 0.00 3.11
8 9 5.835280 TCTCTTCCTTTCTTTTTCATGCCTT 59.165 36.000 0.00 0.00 0.00 4.35
9 10 5.388654 TCTCTTCCTTTCTTTTTCATGCCT 58.611 37.500 0.00 0.00 0.00 4.75
10 11 5.474876 TCTCTCTTCCTTTCTTTTTCATGCC 59.525 40.000 0.00 0.00 0.00 4.40
11 12 6.016777 TGTCTCTCTTCCTTTCTTTTTCATGC 60.017 38.462 0.00 0.00 0.00 4.06
12 13 7.443575 TCTGTCTCTCTTCCTTTCTTTTTCATG 59.556 37.037 0.00 0.00 0.00 3.07
13 14 7.443879 GTCTGTCTCTCTTCCTTTCTTTTTCAT 59.556 37.037 0.00 0.00 0.00 2.57
14 15 6.763610 GTCTGTCTCTCTTCCTTTCTTTTTCA 59.236 38.462 0.00 0.00 0.00 2.69
15 16 6.074034 CGTCTGTCTCTCTTCCTTTCTTTTTC 60.074 42.308 0.00 0.00 0.00 2.29
16 17 5.755861 CGTCTGTCTCTCTTCCTTTCTTTTT 59.244 40.000 0.00 0.00 0.00 1.94
17 18 5.293560 CGTCTGTCTCTCTTCCTTTCTTTT 58.706 41.667 0.00 0.00 0.00 2.27
18 19 4.262249 CCGTCTGTCTCTCTTCCTTTCTTT 60.262 45.833 0.00 0.00 0.00 2.52
19 20 3.257127 CCGTCTGTCTCTCTTCCTTTCTT 59.743 47.826 0.00 0.00 0.00 2.52
20 21 2.823154 CCGTCTGTCTCTCTTCCTTTCT 59.177 50.000 0.00 0.00 0.00 2.52
21 22 2.672760 GCCGTCTGTCTCTCTTCCTTTC 60.673 54.545 0.00 0.00 0.00 2.62
22 23 1.273886 GCCGTCTGTCTCTCTTCCTTT 59.726 52.381 0.00 0.00 0.00 3.11
23 24 0.892063 GCCGTCTGTCTCTCTTCCTT 59.108 55.000 0.00 0.00 0.00 3.36
24 25 0.039035 AGCCGTCTGTCTCTCTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
25 26 0.172352 CAGCCGTCTGTCTCTCTTCC 59.828 60.000 0.00 0.00 35.61 3.46
26 27 0.172352 CCAGCCGTCTGTCTCTCTTC 59.828 60.000 0.00 0.00 38.66 2.87
27 28 0.251386 TCCAGCCGTCTGTCTCTCTT 60.251 55.000 0.00 0.00 38.66 2.85
28 29 0.963355 GTCCAGCCGTCTGTCTCTCT 60.963 60.000 0.00 0.00 38.66 3.10
29 30 1.509004 GTCCAGCCGTCTGTCTCTC 59.491 63.158 0.00 0.00 38.66 3.20
30 31 2.336478 CGTCCAGCCGTCTGTCTCT 61.336 63.158 0.00 0.00 38.66 3.10
31 32 2.179517 CGTCCAGCCGTCTGTCTC 59.820 66.667 0.00 0.00 38.66 3.36
32 33 3.374402 CCGTCCAGCCGTCTGTCT 61.374 66.667 0.00 0.00 38.66 3.41
33 34 4.436998 CCCGTCCAGCCGTCTGTC 62.437 72.222 0.00 0.00 38.66 3.51
40 41 3.842925 TTTCACTGCCCGTCCAGCC 62.843 63.158 0.02 0.00 36.29 4.85
41 42 2.281484 TTTCACTGCCCGTCCAGC 60.281 61.111 0.02 0.00 36.29 4.85
42 43 0.671781 CTCTTTCACTGCCCGTCCAG 60.672 60.000 0.00 0.00 38.78 3.86
43 44 1.118965 TCTCTTTCACTGCCCGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
44 45 0.670854 GTCTCTTTCACTGCCCGTCC 60.671 60.000 0.00 0.00 0.00 4.79
45 46 1.009389 CGTCTCTTTCACTGCCCGTC 61.009 60.000 0.00 0.00 0.00 4.79
46 47 1.006102 CGTCTCTTTCACTGCCCGT 60.006 57.895 0.00 0.00 0.00 5.28
47 48 1.738099 CCGTCTCTTTCACTGCCCG 60.738 63.158 0.00 0.00 0.00 6.13
48 49 0.670854 GTCCGTCTCTTTCACTGCCC 60.671 60.000 0.00 0.00 0.00 5.36
49 50 0.670854 GGTCCGTCTCTTTCACTGCC 60.671 60.000 0.00 0.00 0.00 4.85
50 51 0.033504 TGGTCCGTCTCTTTCACTGC 59.966 55.000 0.00 0.00 0.00 4.40
51 52 1.613925 TCTGGTCCGTCTCTTTCACTG 59.386 52.381 0.00 0.00 0.00 3.66
52 53 1.996798 TCTGGTCCGTCTCTTTCACT 58.003 50.000 0.00 0.00 0.00 3.41
53 54 2.814280 TTCTGGTCCGTCTCTTTCAC 57.186 50.000 0.00 0.00 0.00 3.18
54 55 2.233922 GGATTCTGGTCCGTCTCTTTCA 59.766 50.000 0.00 0.00 0.00 2.69
55 56 2.233922 TGGATTCTGGTCCGTCTCTTTC 59.766 50.000 0.00 0.00 41.35 2.62
56 57 2.257207 TGGATTCTGGTCCGTCTCTTT 58.743 47.619 0.00 0.00 41.35 2.52
57 58 1.938585 TGGATTCTGGTCCGTCTCTT 58.061 50.000 0.00 0.00 41.35 2.85
58 59 1.827969 CTTGGATTCTGGTCCGTCTCT 59.172 52.381 0.00 0.00 41.35 3.10
59 60 1.134670 CCTTGGATTCTGGTCCGTCTC 60.135 57.143 0.00 0.00 41.35 3.36
60 61 0.905357 CCTTGGATTCTGGTCCGTCT 59.095 55.000 0.00 0.00 41.35 4.18
61 62 0.902531 TCCTTGGATTCTGGTCCGTC 59.097 55.000 0.00 0.00 41.35 4.79
62 63 1.358152 TTCCTTGGATTCTGGTCCGT 58.642 50.000 0.00 0.00 41.35 4.69
63 64 2.359900 CTTTCCTTGGATTCTGGTCCG 58.640 52.381 0.00 0.00 41.35 4.79
64 65 2.095461 GCTTTCCTTGGATTCTGGTCC 58.905 52.381 0.00 0.00 38.81 4.46
91 92 3.006003 TGATCGTTGTTGCTACTGTGGTA 59.994 43.478 0.00 0.00 0.00 3.25
93 94 2.412870 TGATCGTTGTTGCTACTGTGG 58.587 47.619 0.00 0.00 0.00 4.17
95 96 3.660501 TCTGATCGTTGTTGCTACTGT 57.339 42.857 0.00 0.00 0.00 3.55
107 108 3.220940 TGCTCTCATCTGATCTGATCGT 58.779 45.455 11.82 0.00 0.00 3.73
192 195 0.470341 CGGGAAGGAAGGAAGGGATC 59.530 60.000 0.00 0.00 0.00 3.36
222 225 6.258068 CGATGTATTTGGGGTAGAAAGAGTTC 59.742 42.308 0.00 0.00 0.00 3.01
230 233 1.758280 ACGCGATGTATTTGGGGTAGA 59.242 47.619 15.93 0.00 0.00 2.59
237 240 3.682377 TGCCCATATACGCGATGTATTTG 59.318 43.478 15.93 5.91 41.01 2.32
241 244 1.401800 CGTGCCCATATACGCGATGTA 60.402 52.381 15.93 2.29 42.13 2.29
249 252 8.540492 CGAAGATATTTATTCGTGCCCATATAC 58.460 37.037 4.98 0.00 42.47 1.47
252 255 6.588756 GTCGAAGATATTTATTCGTGCCCATA 59.411 38.462 11.69 0.00 46.34 2.74
259 267 5.516996 TCAGCGTCGAAGATATTTATTCGT 58.483 37.500 11.69 0.00 46.34 3.85
276 285 2.046892 GGCAGTGTCCATCAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
312 321 2.125713 CACAGTGGCATCGGCGTA 60.126 61.111 6.85 0.00 42.47 4.42
331 343 1.446966 GCAGACCTCTGAACGCTCC 60.447 63.158 6.49 0.00 46.59 4.70
347 364 1.299014 CTTTGCTTGAAACGCGGCA 60.299 52.632 12.47 6.15 0.00 5.69
418 439 0.872021 GACCTGATCGACATGACGCC 60.872 60.000 12.78 7.62 0.00 5.68
425 446 0.037326 GTTGCAGGACCTGATCGACA 60.037 55.000 26.25 10.12 32.44 4.35
443 489 2.118403 TCCTCCAAAGTTGAGAGGGT 57.882 50.000 19.77 0.00 41.74 4.34
478 525 1.430992 AAGGACGGTCCCAGAAAGAA 58.569 50.000 23.21 0.00 37.19 2.52
479 526 1.346722 GAAAGGACGGTCCCAGAAAGA 59.653 52.381 23.21 0.00 37.19 2.52
480 527 1.809684 GAAAGGACGGTCCCAGAAAG 58.190 55.000 23.21 0.00 37.19 2.62
481 528 0.034337 CGAAAGGACGGTCCCAGAAA 59.966 55.000 23.21 0.00 37.19 2.52
482 529 1.669440 CGAAAGGACGGTCCCAGAA 59.331 57.895 23.21 0.00 37.19 3.02
483 530 3.373226 CGAAAGGACGGTCCCAGA 58.627 61.111 23.21 0.00 37.19 3.86
500 547 1.987704 TTGCACGTTGCTGTCACACC 61.988 55.000 10.54 0.00 45.31 4.16
514 895 3.670055 CCATGTTTCTTCGACATTTGCAC 59.330 43.478 0.00 0.00 35.64 4.57
574 955 1.862602 GCCGATCCAAAACCTGCGTT 61.863 55.000 0.00 0.00 0.00 4.84
651 1039 8.538409 AACTATCTTAACATACGAACGGTTTT 57.462 30.769 0.00 0.00 0.00 2.43
674 1063 5.487153 TCTCGCTACTCTTCATACAGAAC 57.513 43.478 0.00 0.00 31.61 3.01
726 1608 2.010582 TTCTTGCACCACAAACCCGC 62.011 55.000 0.00 0.00 37.96 6.13
763 1645 7.467131 GCCAACTTGCTTTGAATATTTTGTGTT 60.467 33.333 0.00 0.00 0.00 3.32
764 1646 6.018016 GCCAACTTGCTTTGAATATTTTGTGT 60.018 34.615 0.00 0.00 0.00 3.72
799 1987 5.975988 AGGTCAGCTTCCCAAATATTCTA 57.024 39.130 1.43 0.00 0.00 2.10
801 1989 4.822350 GGTAGGTCAGCTTCCCAAATATTC 59.178 45.833 1.43 0.00 0.00 1.75
804 1992 3.199946 CAGGTAGGTCAGCTTCCCAAATA 59.800 47.826 0.00 0.00 30.72 1.40
806 1994 1.351017 CAGGTAGGTCAGCTTCCCAAA 59.649 52.381 0.00 0.00 30.72 3.28
838 2059 4.773209 GGAATCGGTCCGGGATTC 57.227 61.111 18.48 18.48 45.71 2.52
1001 2252 2.632996 TCACTTGAATCGGGAGTGAACT 59.367 45.455 10.18 0.00 44.77 3.01
1073 2361 4.324176 CCATGAGAGATAGAGGGAGATCGA 60.324 50.000 0.00 0.00 0.00 3.59
1075 2363 3.701040 GCCATGAGAGATAGAGGGAGATC 59.299 52.174 0.00 0.00 0.00 2.75
1076 2364 3.337605 AGCCATGAGAGATAGAGGGAGAT 59.662 47.826 0.00 0.00 0.00 2.75
1077 2365 2.721355 AGCCATGAGAGATAGAGGGAGA 59.279 50.000 0.00 0.00 0.00 3.71
1078 2366 2.827322 CAGCCATGAGAGATAGAGGGAG 59.173 54.545 0.00 0.00 0.00 4.30
1079 2367 2.886913 CAGCCATGAGAGATAGAGGGA 58.113 52.381 0.00 0.00 0.00 4.20
1080 2368 1.275856 GCAGCCATGAGAGATAGAGGG 59.724 57.143 0.00 0.00 0.00 4.30
1081 2369 1.969208 TGCAGCCATGAGAGATAGAGG 59.031 52.381 0.00 0.00 0.00 3.69
1098 2421 0.108804 GCCGACTTGTAGTAGCTGCA 60.109 55.000 4.12 0.00 0.00 4.41
1099 2422 0.806492 GGCCGACTTGTAGTAGCTGC 60.806 60.000 0.00 0.00 30.69 5.25
1104 2427 1.019673 CGCTAGGCCGACTTGTAGTA 58.980 55.000 0.00 0.00 0.00 1.82
1278 2692 1.228154 GAACGAGCCAGGGTGGTTT 60.228 57.895 18.91 4.63 40.46 3.27
1386 2849 4.845580 ATGCGCTTCGAGCCCAGG 62.846 66.667 9.73 0.00 38.18 4.45
1407 2870 4.435436 CGGGCACACTGAGCGCTA 62.435 66.667 11.50 0.00 42.11 4.26
1449 2912 4.614112 TGCTGTGACTGCTGCGCT 62.614 61.111 15.36 0.00 36.33 5.92
1539 3005 2.876550 GTTCTTTTACTGGTTGTCGCCT 59.123 45.455 0.00 0.00 0.00 5.52
1557 3026 2.740714 GGCATGTCGACGCTGGTTC 61.741 63.158 11.62 0.00 0.00 3.62
1560 3029 1.217585 CTATGGCATGTCGACGCTGG 61.218 60.000 10.98 1.12 0.00 4.85
1614 3094 1.620819 CCCCACCGATTCTATCTCCAG 59.379 57.143 0.00 0.00 0.00 3.86
1650 3130 3.934068 TCTAAATTGACCAGTCCGGAAC 58.066 45.455 5.23 0.00 38.63 3.62
1683 3236 2.653115 CGCTGACAGCAGAGGACA 59.347 61.111 26.32 0.00 45.17 4.02
1694 3247 1.193874 CGTTCCTTTTACACCGCTGAC 59.806 52.381 0.00 0.00 0.00 3.51
1697 3250 1.232621 GGCGTTCCTTTTACACCGCT 61.233 55.000 0.00 0.00 40.82 5.52
1786 3376 2.175878 CAAGGATGGATAAGCCTCCG 57.824 55.000 0.00 0.00 38.35 4.63
1799 3389 2.762327 GGCACACAAATCATCCAAGGAT 59.238 45.455 0.00 0.00 34.81 3.24
1827 3417 2.139118 ACAGAAACGAGAGCAGAAAGC 58.861 47.619 0.00 0.00 46.19 3.51
1837 3439 3.871594 ACAGAAACAGGAACAGAAACGAG 59.128 43.478 0.00 0.00 0.00 4.18
1838 3440 3.869065 ACAGAAACAGGAACAGAAACGA 58.131 40.909 0.00 0.00 0.00 3.85
1839 3441 4.616181 AACAGAAACAGGAACAGAAACG 57.384 40.909 0.00 0.00 0.00 3.60
1840 3442 6.030228 CAGAAACAGAAACAGGAACAGAAAC 58.970 40.000 0.00 0.00 0.00 2.78
1841 3443 5.125417 CCAGAAACAGAAACAGGAACAGAAA 59.875 40.000 0.00 0.00 0.00 2.52
1842 3444 4.640201 CCAGAAACAGAAACAGGAACAGAA 59.360 41.667 0.00 0.00 0.00 3.02
1843 3445 4.080582 TCCAGAAACAGAAACAGGAACAGA 60.081 41.667 0.00 0.00 0.00 3.41
1844 3446 4.199310 TCCAGAAACAGAAACAGGAACAG 58.801 43.478 0.00 0.00 0.00 3.16
1845 3447 4.199310 CTCCAGAAACAGAAACAGGAACA 58.801 43.478 0.00 0.00 0.00 3.18
1846 3448 4.035675 CACTCCAGAAACAGAAACAGGAAC 59.964 45.833 0.00 0.00 0.00 3.62
1847 3449 4.199310 CACTCCAGAAACAGAAACAGGAA 58.801 43.478 0.00 0.00 0.00 3.36
1848 3450 3.433598 CCACTCCAGAAACAGAAACAGGA 60.434 47.826 0.00 0.00 0.00 3.86
1849 3451 2.880890 CCACTCCAGAAACAGAAACAGG 59.119 50.000 0.00 0.00 0.00 4.00
1875 3477 1.338769 CGAAACGGAAACAGGGGATCT 60.339 52.381 0.00 0.00 0.00 2.75
1990 3603 3.708734 CGACCCGTGCGTGTTTCC 61.709 66.667 0.00 0.00 0.00 3.13
2005 3621 4.271696 ACACAAATCTCATCAGAACCGA 57.728 40.909 0.00 0.00 30.24 4.69
2015 3631 8.675705 TCATGAAAGTTCTTACACAAATCTCA 57.324 30.769 0.00 0.00 0.00 3.27
2027 3643 8.648557 TTATCGATTCGATCATGAAAGTTCTT 57.351 30.769 23.82 0.00 43.45 2.52
2064 3680 4.520492 ACCACGAGCATGAAGAAGAAAAAT 59.480 37.500 0.00 0.00 0.00 1.82
2071 3732 3.678056 AAGTACCACGAGCATGAAGAA 57.322 42.857 0.00 0.00 0.00 2.52
2077 3738 3.955650 ACAGTAAAGTACCACGAGCAT 57.044 42.857 0.00 0.00 0.00 3.79
2079 3740 2.157085 GCAACAGTAAAGTACCACGAGC 59.843 50.000 0.00 0.00 0.00 5.03
2080 3741 2.735134 GGCAACAGTAAAGTACCACGAG 59.265 50.000 0.00 0.00 0.00 4.18
2086 3747 2.460757 TCCCGGCAACAGTAAAGTAC 57.539 50.000 0.00 0.00 0.00 2.73
2153 3839 4.994471 TGGCCAGCTGTGCGAGTG 62.994 66.667 13.81 0.00 0.00 3.51
2154 3840 4.694233 CTGGCCAGCTGTGCGAGT 62.694 66.667 22.33 0.00 30.89 4.18
2190 3920 0.804989 CATCTCCGGCCAAGAAACAC 59.195 55.000 2.24 0.00 0.00 3.32
2206 3936 2.359850 TGTGCCGGGCAACTCATC 60.360 61.111 25.70 10.85 41.47 2.92
2249 3979 5.308237 ACTGTATTTGATAGGGAGATGGGAC 59.692 44.000 0.00 0.00 0.00 4.46
2251 3981 5.072329 ACACTGTATTTGATAGGGAGATGGG 59.928 44.000 0.00 0.00 0.00 4.00
2252 3982 6.179906 ACACTGTATTTGATAGGGAGATGG 57.820 41.667 0.00 0.00 0.00 3.51
2271 4001 5.560183 CGGATCGTTAAGCAAAAGAAACACT 60.560 40.000 0.00 0.00 0.00 3.55
2300 4030 5.716228 AGCGGAAGATCTTAGAGATGATCAT 59.284 40.000 8.25 8.25 40.92 2.45
2309 4045 3.381908 GGTTCTCAGCGGAAGATCTTAGA 59.618 47.826 8.25 3.55 0.00 2.10
2344 4108 0.321210 CCCAACGCATCCAGTGTACA 60.321 55.000 0.00 0.00 40.86 2.90
2409 4193 4.639310 AGAACTTTATTCCAGCATCAGCAG 59.361 41.667 0.00 0.00 45.49 4.24
2418 4202 8.552034 GGATATTCAACGAGAACTTTATTCCAG 58.448 37.037 0.00 0.00 39.49 3.86
2430 4214 1.026584 TCGCCGGATATTCAACGAGA 58.973 50.000 5.05 0.00 0.00 4.04
2446 4234 9.267096 CAGATATTCAGTTAAAGAAAAAGTCGC 57.733 33.333 0.00 0.00 0.00 5.19
2484 4272 6.145048 CCAGTTTGTTAGAACGTACTACCAAG 59.855 42.308 0.00 0.00 34.74 3.61
2485 4273 5.984926 CCAGTTTGTTAGAACGTACTACCAA 59.015 40.000 0.00 0.00 34.74 3.67
2486 4274 5.068987 ACCAGTTTGTTAGAACGTACTACCA 59.931 40.000 0.00 0.00 34.74 3.25
2508 4296 8.431910 TCTGGTTAGGAAGTGGATATTATACC 57.568 38.462 0.00 0.00 0.00 2.73
2512 4301 7.931015 ACATCTGGTTAGGAAGTGGATATTA 57.069 36.000 0.00 0.00 0.00 0.98
2521 4311 6.656693 ACATTTCAGAACATCTGGTTAGGAAG 59.343 38.462 7.47 0.00 44.39 3.46
2524 4314 5.939883 TGACATTTCAGAACATCTGGTTAGG 59.060 40.000 7.47 0.00 44.39 2.69
2569 4359 1.736645 TGCGTCCTAAAGTGCTCGC 60.737 57.895 0.00 0.00 43.14 5.03
2580 4370 1.019278 CCGTAGCATTTGTGCGTCCT 61.019 55.000 0.00 0.00 40.27 3.85
2595 4410 0.245266 TTCATCTGCTTGCGTCCGTA 59.755 50.000 0.00 0.00 0.00 4.02
2604 4419 3.080319 GGCAAGAGACTTTCATCTGCTT 58.920 45.455 0.00 0.00 32.12 3.91
2611 4426 1.667830 CGCCGGCAAGAGACTTTCA 60.668 57.895 28.98 0.00 0.00 2.69
2631 4446 1.596477 GACTCGATCATGCCCTGCC 60.596 63.158 0.00 0.00 0.00 4.85
2671 4494 1.377725 CCGTGGCAGGCAGATCTTT 60.378 57.895 0.00 0.00 0.00 2.52
2692 4515 0.397941 TGCCACTGAACTTCTCCAGG 59.602 55.000 0.00 0.00 34.85 4.45
2870 4777 1.752694 GTATTGGTGTGCCCGGCAT 60.753 57.895 16.96 0.01 41.91 4.40
2871 4778 2.360600 GTATTGGTGTGCCCGGCA 60.361 61.111 8.43 8.43 35.60 5.69
2872 4779 0.464735 TATGTATTGGTGTGCCCGGC 60.465 55.000 1.04 1.04 35.15 6.13
2873 4780 2.151202 GATATGTATTGGTGTGCCCGG 58.849 52.381 0.00 0.00 35.15 5.73
2874 4781 2.548057 GTGATATGTATTGGTGTGCCCG 59.452 50.000 0.00 0.00 35.15 6.13
2875 4782 2.884639 GGTGATATGTATTGGTGTGCCC 59.115 50.000 0.00 0.00 0.00 5.36
2876 4783 3.565482 CAGGTGATATGTATTGGTGTGCC 59.435 47.826 0.00 0.00 0.00 5.01
2877 4784 4.035558 CACAGGTGATATGTATTGGTGTGC 59.964 45.833 0.00 0.00 0.00 4.57
2878 4785 4.576053 CCACAGGTGATATGTATTGGTGTG 59.424 45.833 0.00 0.00 34.00 3.82
2879 4786 4.780815 CCACAGGTGATATGTATTGGTGT 58.219 43.478 0.00 0.00 0.00 4.16
2880 4787 3.565482 GCCACAGGTGATATGTATTGGTG 59.435 47.826 0.00 0.00 0.00 4.17
2881 4788 3.201930 TGCCACAGGTGATATGTATTGGT 59.798 43.478 0.00 0.00 0.00 3.67
2882 4789 3.817084 CTGCCACAGGTGATATGTATTGG 59.183 47.826 0.00 0.00 0.00 3.16
2883 4790 4.274214 CACTGCCACAGGTGATATGTATTG 59.726 45.833 0.00 0.00 35.51 1.90
2884 4791 4.454678 CACTGCCACAGGTGATATGTATT 58.545 43.478 0.00 0.00 35.51 1.89
2885 4792 3.181451 CCACTGCCACAGGTGATATGTAT 60.181 47.826 0.00 0.00 35.51 2.29
2886 4793 2.170397 CCACTGCCACAGGTGATATGTA 59.830 50.000 0.00 0.00 35.51 2.29
2887 4794 1.065199 CCACTGCCACAGGTGATATGT 60.065 52.381 0.00 0.00 35.51 2.29
2888 4795 1.671979 CCACTGCCACAGGTGATATG 58.328 55.000 0.00 0.00 35.51 1.78
2889 4796 0.107017 GCCACTGCCACAGGTGATAT 60.107 55.000 0.00 0.00 35.51 1.63
2890 4797 1.299648 GCCACTGCCACAGGTGATA 59.700 57.895 0.00 0.00 35.51 2.15
2891 4798 2.034687 GCCACTGCCACAGGTGAT 59.965 61.111 0.00 0.00 35.51 3.06
2892 4799 4.624364 CGCCACTGCCACAGGTGA 62.624 66.667 0.00 0.00 35.51 4.02
2901 4808 3.807538 CAGTCATGCCGCCACTGC 61.808 66.667 0.00 0.00 31.62 4.40
2902 4809 2.359107 ACAGTCATGCCGCCACTG 60.359 61.111 9.34 9.34 42.80 3.66
2903 4810 2.046892 GACAGTCATGCCGCCACT 60.047 61.111 0.00 0.00 0.00 4.00
2904 4811 2.358615 TGACAGTCATGCCGCCAC 60.359 61.111 0.00 0.00 0.00 5.01
2905 4812 2.046988 CTGACAGTCATGCCGCCA 60.047 61.111 2.97 0.00 0.00 5.69
2906 4813 1.672356 AACTGACAGTCATGCCGCC 60.672 57.895 8.93 0.00 0.00 6.13
2907 4814 1.499056 CAACTGACAGTCATGCCGC 59.501 57.895 8.93 0.00 0.00 6.53
2908 4815 1.915614 GCCAACTGACAGTCATGCCG 61.916 60.000 8.93 0.00 0.00 5.69
2909 4816 0.607489 AGCCAACTGACAGTCATGCC 60.607 55.000 8.93 0.00 0.00 4.40
2910 4817 0.801251 GAGCCAACTGACAGTCATGC 59.199 55.000 8.93 11.63 0.00 4.06
2911 4818 2.074576 CAGAGCCAACTGACAGTCATG 58.925 52.381 8.93 4.38 39.94 3.07
2912 4819 1.696336 ACAGAGCCAACTGACAGTCAT 59.304 47.619 8.93 0.00 40.63 3.06
2913 4820 1.123077 ACAGAGCCAACTGACAGTCA 58.877 50.000 8.93 2.48 40.63 3.41
2914 4821 2.139118 GAACAGAGCCAACTGACAGTC 58.861 52.381 8.93 0.00 40.63 3.51
2915 4822 1.765314 AGAACAGAGCCAACTGACAGT 59.235 47.619 1.07 1.07 40.63 3.55
2916 4823 2.036992 AGAGAACAGAGCCAACTGACAG 59.963 50.000 0.00 0.00 40.63 3.51
2917 4824 2.042464 AGAGAACAGAGCCAACTGACA 58.958 47.619 9.56 0.00 40.63 3.58
2918 4825 2.829741 AGAGAACAGAGCCAACTGAC 57.170 50.000 9.56 4.45 40.63 3.51
2919 4826 4.089361 TGATAGAGAACAGAGCCAACTGA 58.911 43.478 9.56 0.00 40.63 3.41
2920 4827 4.462508 TGATAGAGAACAGAGCCAACTG 57.537 45.455 0.00 0.00 42.78 3.16
2921 4828 5.489792 TTTGATAGAGAACAGAGCCAACT 57.510 39.130 0.00 0.00 0.00 3.16
2922 4829 6.818644 TGTATTTGATAGAGAACAGAGCCAAC 59.181 38.462 0.00 0.00 0.00 3.77
2923 4830 6.946340 TGTATTTGATAGAGAACAGAGCCAA 58.054 36.000 0.00 0.00 0.00 4.52
2924 4831 6.155221 ACTGTATTTGATAGAGAACAGAGCCA 59.845 38.462 7.24 0.00 38.14 4.75
2925 4832 6.478344 CACTGTATTTGATAGAGAACAGAGCC 59.522 42.308 7.24 0.00 38.14 4.70
2926 4833 6.019156 GCACTGTATTTGATAGAGAACAGAGC 60.019 42.308 7.24 7.05 41.71 4.09
2927 4834 6.478344 GGCACTGTATTTGATAGAGAACAGAG 59.522 42.308 7.24 0.91 38.14 3.35
2928 4835 6.155221 AGGCACTGTATTTGATAGAGAACAGA 59.845 38.462 7.24 0.00 37.18 3.41
2929 4836 6.344500 AGGCACTGTATTTGATAGAGAACAG 58.656 40.000 0.00 0.00 37.18 3.16
2930 4837 6.299805 AGGCACTGTATTTGATAGAGAACA 57.700 37.500 0.00 0.00 37.18 3.18
2952 4859 0.519077 GAGAAAAAGGAGCACCGCAG 59.481 55.000 0.00 0.00 41.83 5.18
2953 4860 0.179032 TGAGAAAAAGGAGCACCGCA 60.179 50.000 0.00 0.00 41.83 5.69
2954 4861 0.519077 CTGAGAAAAAGGAGCACCGC 59.481 55.000 0.00 0.00 41.83 5.68
2955 4862 0.519077 GCTGAGAAAAAGGAGCACCG 59.481 55.000 0.00 0.00 41.83 4.94
2956 4863 0.519077 CGCTGAGAAAAAGGAGCACC 59.481 55.000 0.00 0.00 0.00 5.01
2957 4864 1.512926 TCGCTGAGAAAAAGGAGCAC 58.487 50.000 0.00 0.00 0.00 4.40
2958 4865 1.873591 GTTCGCTGAGAAAAAGGAGCA 59.126 47.619 0.00 0.00 41.10 4.26
2959 4866 1.136224 CGTTCGCTGAGAAAAAGGAGC 60.136 52.381 0.00 0.00 41.10 4.70
2960 4867 2.404215 TCGTTCGCTGAGAAAAAGGAG 58.596 47.619 0.00 0.00 41.10 3.69
2961 4868 2.519377 TCGTTCGCTGAGAAAAAGGA 57.481 45.000 0.00 0.00 41.10 3.36
2962 4869 3.602390 TTTCGTTCGCTGAGAAAAAGG 57.398 42.857 0.00 0.00 41.10 3.11
2965 4872 8.500773 ACTAATATTTTTCGTTCGCTGAGAAAA 58.499 29.630 0.00 0.00 41.10 2.29
2966 4873 7.955324 CACTAATATTTTTCGTTCGCTGAGAAA 59.045 33.333 0.00 0.00 41.10 2.52
2967 4874 7.117236 ACACTAATATTTTTCGTTCGCTGAGAA 59.883 33.333 0.00 0.00 36.31 2.87
2968 4875 6.588756 ACACTAATATTTTTCGTTCGCTGAGA 59.411 34.615 0.00 0.00 0.00 3.27
2969 4876 6.762108 ACACTAATATTTTTCGTTCGCTGAG 58.238 36.000 0.00 0.00 0.00 3.35
2970 4877 6.183360 GGACACTAATATTTTTCGTTCGCTGA 60.183 38.462 0.00 0.00 0.00 4.26
2971 4878 5.957796 GGACACTAATATTTTTCGTTCGCTG 59.042 40.000 0.00 0.00 0.00 5.18
2972 4879 5.640357 TGGACACTAATATTTTTCGTTCGCT 59.360 36.000 0.00 0.00 0.00 4.93
2973 4880 5.731263 GTGGACACTAATATTTTTCGTTCGC 59.269 40.000 0.00 0.00 0.00 4.70
2974 4881 7.057149 AGTGGACACTAATATTTTTCGTTCG 57.943 36.000 2.58 0.00 40.43 3.95
2975 4882 9.673454 AAAAGTGGACACTAATATTTTTCGTTC 57.327 29.630 5.25 0.00 41.58 3.95
2976 4883 9.673454 GAAAAGTGGACACTAATATTTTTCGTT 57.327 29.630 5.25 0.00 41.58 3.85
2977 4884 8.842280 TGAAAAGTGGACACTAATATTTTTCGT 58.158 29.630 5.25 0.00 41.58 3.85
2978 4885 9.329913 CTGAAAAGTGGACACTAATATTTTTCG 57.670 33.333 5.25 4.65 41.58 3.46
2982 4889 9.739276 TCATCTGAAAAGTGGACACTAATATTT 57.261 29.630 5.25 2.71 41.58 1.40
2983 4890 9.739276 TTCATCTGAAAAGTGGACACTAATATT 57.261 29.630 5.25 0.00 41.58 1.28
2984 4891 9.167311 GTTCATCTGAAAAGTGGACACTAATAT 57.833 33.333 5.25 0.00 41.58 1.28
2985 4892 7.330946 CGTTCATCTGAAAAGTGGACACTAATA 59.669 37.037 5.25 0.00 41.58 0.98
2986 4893 6.147821 CGTTCATCTGAAAAGTGGACACTAAT 59.852 38.462 5.25 0.00 41.58 1.73
2987 4894 5.465390 CGTTCATCTGAAAAGTGGACACTAA 59.535 40.000 5.25 0.00 41.58 2.24
2988 4895 4.988540 CGTTCATCTGAAAAGTGGACACTA 59.011 41.667 5.25 0.00 41.58 2.74
2989 4896 3.809832 CGTTCATCTGAAAAGTGGACACT 59.190 43.478 0.00 0.00 44.94 3.55
2990 4897 3.807622 TCGTTCATCTGAAAAGTGGACAC 59.192 43.478 0.00 0.00 35.58 3.67
2991 4898 4.066646 TCGTTCATCTGAAAAGTGGACA 57.933 40.909 0.00 0.00 35.58 4.02
2992 4899 4.608445 CGTTCGTTCATCTGAAAAGTGGAC 60.608 45.833 0.00 0.00 35.58 4.02
2993 4900 3.493129 CGTTCGTTCATCTGAAAAGTGGA 59.507 43.478 0.00 0.00 35.58 4.02
2994 4901 3.363970 CCGTTCGTTCATCTGAAAAGTGG 60.364 47.826 0.00 0.00 35.58 4.00
2995 4902 3.493129 TCCGTTCGTTCATCTGAAAAGTG 59.507 43.478 0.00 0.00 35.58 3.16
2996 4903 3.724374 TCCGTTCGTTCATCTGAAAAGT 58.276 40.909 0.00 0.00 35.58 2.66
2997 4904 4.725556 TTCCGTTCGTTCATCTGAAAAG 57.274 40.909 0.00 0.00 35.58 2.27
2998 4905 5.487153 TTTTCCGTTCGTTCATCTGAAAA 57.513 34.783 0.00 0.00 35.58 2.29
2999 4906 5.682943 ATTTTCCGTTCGTTCATCTGAAA 57.317 34.783 0.00 0.00 35.58 2.69
3000 4907 6.592220 TGATATTTTCCGTTCGTTCATCTGAA 59.408 34.615 0.00 0.00 0.00 3.02
3001 4908 6.103330 TGATATTTTCCGTTCGTTCATCTGA 58.897 36.000 0.00 0.00 0.00 3.27
3002 4909 6.344572 TGATATTTTCCGTTCGTTCATCTG 57.655 37.500 0.00 0.00 0.00 2.90
3003 4910 7.409697 CAATGATATTTTCCGTTCGTTCATCT 58.590 34.615 0.00 0.00 0.00 2.90
3004 4911 6.140737 GCAATGATATTTTCCGTTCGTTCATC 59.859 38.462 0.00 0.00 0.00 2.92
3005 4912 5.971202 GCAATGATATTTTCCGTTCGTTCAT 59.029 36.000 0.00 0.00 0.00 2.57
3006 4913 5.328691 GCAATGATATTTTCCGTTCGTTCA 58.671 37.500 0.00 0.00 0.00 3.18
3007 4914 4.733405 GGCAATGATATTTTCCGTTCGTTC 59.267 41.667 0.00 0.00 0.00 3.95
3008 4915 4.156922 TGGCAATGATATTTTCCGTTCGTT 59.843 37.500 0.00 0.00 0.00 3.85
3009 4916 3.692101 TGGCAATGATATTTTCCGTTCGT 59.308 39.130 0.00 0.00 0.00 3.85
3010 4917 4.282068 CTGGCAATGATATTTTCCGTTCG 58.718 43.478 0.00 0.00 0.00 3.95
3011 4918 4.610945 CCTGGCAATGATATTTTCCGTTC 58.389 43.478 0.00 0.00 0.00 3.95
3012 4919 3.181476 GCCTGGCAATGATATTTTCCGTT 60.181 43.478 15.17 0.00 0.00 4.44
3013 4920 2.362077 GCCTGGCAATGATATTTTCCGT 59.638 45.455 15.17 0.00 0.00 4.69
3014 4921 2.361757 TGCCTGGCAATGATATTTTCCG 59.638 45.455 21.08 0.00 34.76 4.30
3015 4922 3.385755 ACTGCCTGGCAATGATATTTTCC 59.614 43.478 23.51 0.00 38.41 3.13
3016 4923 4.660789 ACTGCCTGGCAATGATATTTTC 57.339 40.909 23.51 0.00 38.41 2.29
3017 4924 7.233632 TCTATACTGCCTGGCAATGATATTTT 58.766 34.615 23.51 3.01 38.41 1.82
3018 4925 6.782986 TCTATACTGCCTGGCAATGATATTT 58.217 36.000 23.51 4.54 38.41 1.40
3019 4926 6.378661 TCTATACTGCCTGGCAATGATATT 57.621 37.500 23.51 6.06 38.41 1.28
3020 4927 5.628666 GCTCTATACTGCCTGGCAATGATAT 60.629 44.000 23.51 18.13 38.41 1.63
3021 4928 4.323028 GCTCTATACTGCCTGGCAATGATA 60.323 45.833 23.51 17.24 38.41 2.15
3022 4929 3.558746 GCTCTATACTGCCTGGCAATGAT 60.559 47.826 23.51 17.05 38.41 2.45
3023 4930 2.224378 GCTCTATACTGCCTGGCAATGA 60.224 50.000 23.51 10.93 38.41 2.57
3024 4931 2.149578 GCTCTATACTGCCTGGCAATG 58.850 52.381 23.51 14.49 38.41 2.82
3025 4932 1.770658 TGCTCTATACTGCCTGGCAAT 59.229 47.619 23.51 16.25 38.41 3.56
3026 4933 1.203237 TGCTCTATACTGCCTGGCAA 58.797 50.000 23.51 9.41 38.41 4.52
3027 4934 1.345741 GATGCTCTATACTGCCTGGCA 59.654 52.381 21.96 21.96 36.92 4.92
3028 4935 1.622811 AGATGCTCTATACTGCCTGGC 59.377 52.381 12.87 12.87 0.00 4.85
3029 4936 2.233431 GGAGATGCTCTATACTGCCTGG 59.767 54.545 0.00 0.00 0.00 4.45
3030 4937 2.233431 GGGAGATGCTCTATACTGCCTG 59.767 54.545 0.00 0.00 37.76 4.85
3031 4938 2.158249 TGGGAGATGCTCTATACTGCCT 60.158 50.000 0.00 0.00 40.59 4.75
3032 4939 2.251818 TGGGAGATGCTCTATACTGCC 58.748 52.381 0.00 0.00 40.41 4.85
3033 4940 4.952957 TCTATGGGAGATGCTCTATACTGC 59.047 45.833 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.