AutoCloner

Multiple sequence alignment - TraesCS6B01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G400000	chr6B	100.000	2634	0	0	1	2634	675569581	675566948	0.000000e+00	4865
1	TraesCS6B01G400000	chr6B	89.231	1560	81	25	453	1990	676135738	676137232	0.000000e+00	1869
2	TraesCS6B01G400000	chr6B	82.150	493	47	20	1111	1572	675626739	675626257	4.110000e-103	385
3	TraesCS6B01G400000	chr6B	89.313	262	12	5	155	400	676135473	676135734	5.470000e-82	315
4	TraesCS6B01G400000	chr6B	79.394	495	42	32	1111	1569	676123577	676124047	7.130000e-76	294
5	TraesCS6B01G400000	chr6B	79.518	332	35	20	1085	1391	678542677	678543000	3.440000e-49	206
6	TraesCS6B01G400000	chr6B	81.467	259	31	12	379	633	678540399	678540644	2.070000e-46	196
7	TraesCS6B01G400000	chr6B	88.415	164	13	5	497	659	676035639	676035797	2.680000e-45	193
8	TraesCS6B01G400000	chr6B	83.838	198	24	7	507	702	677090665	677090474	5.790000e-42	182
9	TraesCS6B01G400000	chr6B	80.000	280	24	11	379	650	676498895	676498640	7.490000e-41	178
10	TraesCS6B01G400000	chr6B	80.100	201	28	8	1413	1604	678357396	678357593	3.540000e-29	139
11	TraesCS6B01G400000	chr6D	84.681	1867	144	58	2	1839	446947415	446949168	0.000000e+00	1733
12	TraesCS6B01G400000	chr6D	82.136	543	50	25	1090	1599	446902004	446902532	3.130000e-114	422
13	TraesCS6B01G400000	chr6D	83.133	498	42	25	1111	1569	446934808	446935302	1.460000e-112	416
14	TraesCS6B01G400000	chr6D	77.917	557	57	27	1048	1568	446882257	446882783	1.190000e-73	287
15	TraesCS6B01G400000	chr6D	78.088	502	66	27	1101	1567	447761145	447761637	7.180000e-71	278
16	TraesCS6B01G400000	chr6D	81.503	346	39	9	301	629	447216442	447216105	7.230000e-66	261
17	TraesCS6B01G400000	chr6D	77.664	488	54	24	1107	1568	446728049	446727591	2.020000e-61	246
18	TraesCS6B01G400000	chr6D	85.030	167	16	5	408	572	446929822	446929981	7.540000e-36	161
19	TraesCS6B01G400000	chr6A	85.975	1590	112	48	427	1989	593791675	593793180	0.000000e+00	1598
20	TraesCS6B01G400000	chr6A	86.822	387	31	8	2	381	593791302	593791675	5.250000e-112	414
21	TraesCS6B01G400000	chr6A	76.810	746	72	47	870	1568	593732617	593733308	2.530000e-85	326
22	TraesCS6B01G400000	chr6A	79.722	360	56	11	301	650	594364285	594364637	7.280000e-61	244
23	TraesCS6B01G400000	chr6A	85.593	236	24	5	379	609	593930792	593930562	3.390000e-59	239
24	TraesCS6B01G400000	chr6A	82.288	271	31	9	1137	1391	593992311	593992042	4.410000e-53	219
25	TraesCS6B01G400000	chr1B	92.736	647	45	1	1990	2634	625466478	625465832	0.000000e+00	933
26	TraesCS6B01G400000	chr2A	92.615	650	45	2	1988	2634	166851429	166852078	0.000000e+00	931
27	TraesCS6B01G400000	chr7B	92.450	649	47	1	1988	2634	414095283	414094635	0.000000e+00	926
28	TraesCS6B01G400000	chr3B	92.462	650	44	4	1988	2634	400302497	400303144	0.000000e+00	924
29	TraesCS6B01G400000	chr2D	92.450	649	46	2	1988	2634	586773883	586774530	0.000000e+00	924
30	TraesCS6B01G400000	chr5A	92.117	647	48	2	1990	2634	580927794	580928439	0.000000e+00	909
31	TraesCS6B01G400000	chr2B	91.963	647	50	1	1990	2634	478889772	478889126	0.000000e+00	905
32	TraesCS6B01G400000	chr5D	91.834	649	49	3	1988	2634	431561983	431561337	0.000000e+00	902
33	TraesCS6B01G400000	chr3D	91.808	647	50	2	1990	2634	420048163	420047518	0.000000e+00	898

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G400000	chr6B	675566948	675569581	2633	True	4865	4865	100.0000	1	2634	1	chr6B.!!$R1	2633
1	TraesCS6B01G400000	chr6B	676135473	676137232	1759	False	1092	1869	89.2720	155	1990	2	chr6B.!!$F4	1835
2	TraesCS6B01G400000	chr6B	678540399	678543000	2601	False	201	206	80.4925	379	1391	2	chr6B.!!$F5	1012
3	TraesCS6B01G400000	chr6D	446947415	446949168	1753	False	1733	1733	84.6810	2	1839	1	chr6D.!!$F5	1837
4	TraesCS6B01G400000	chr6D	446902004	446902532	528	False	422	422	82.1360	1090	1599	1	chr6D.!!$F2	509
5	TraesCS6B01G400000	chr6D	446882257	446882783	526	False	287	287	77.9170	1048	1568	1	chr6D.!!$F1	520
6	TraesCS6B01G400000	chr6A	593791302	593793180	1878	False	1006	1598	86.3985	2	1989	2	chr6A.!!$F3	1987
7	TraesCS6B01G400000	chr6A	593732617	593733308	691	False	326	326	76.8100	870	1568	1	chr6A.!!$F1	698
8	TraesCS6B01G400000	chr1B	625465832	625466478	646	True	933	933	92.7360	1990	2634	1	chr1B.!!$R1	644
9	TraesCS6B01G400000	chr2A	166851429	166852078	649	False	931	931	92.6150	1988	2634	1	chr2A.!!$F1	646
10	TraesCS6B01G400000	chr7B	414094635	414095283	648	True	926	926	92.4500	1988	2634	1	chr7B.!!$R1	646
11	TraesCS6B01G400000	chr3B	400302497	400303144	647	False	924	924	92.4620	1988	2634	1	chr3B.!!$F1	646
12	TraesCS6B01G400000	chr2D	586773883	586774530	647	False	924	924	92.4500	1988	2634	1	chr2D.!!$F1	646
13	TraesCS6B01G400000	chr5A	580927794	580928439	645	False	909	909	92.1170	1990	2634	1	chr5A.!!$F1	644
14	TraesCS6B01G400000	chr2B	478889126	478889772	646	True	905	905	91.9630	1990	2634	1	chr2B.!!$R1	644
15	TraesCS6B01G400000	chr5D	431561337	431561983	646	True	902	902	91.8340	1988	2634	1	chr5D.!!$R1	646
16	TraesCS6B01G400000	chr3D	420047518	420048163	645	True	898	898	91.8080	1990	2634	1	chr3D.!!$R1	644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
464	497	0.318107	ACTCCACGAACCAACGTACG	60.318	55.0	15.01	15.01	44.76	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1689	3561	0.10852	TTACGGACGGGCTCATCAAC	60.109	55.0	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	60	5.859205	TTAGCACTAGATCTGCATCTGAA	57.141	39.130	5.18	0.00	39.90	3.02
60	61	4.057406	AGCACTAGATCTGCATCTGAAC	57.943	45.455	5.18	0.00	39.90	3.18
121	126	5.303333	TGTCGTGGCTGGATTACTGATTATA	59.697	40.000	0.00	0.00	0.00	0.98
122	127	6.014584	TGTCGTGGCTGGATTACTGATTATAT	60.015	38.462	0.00	0.00	0.00	0.86
137	142	3.452755	TTATATGCCCACAGACTCACG	57.547	47.619	0.00	0.00	0.00	4.35
145	150	1.832608	ACAGACTCACGGAGGCACA	60.833	57.895	9.11	0.00	40.81	4.57
148	153	3.941657	GACTCACGGAGGCACAGGC	62.942	68.421	2.24	0.00	37.69	4.85
149	154	4.007644	CTCACGGAGGCACAGGCA	62.008	66.667	0.00	0.00	43.71	4.75
150	155	4.314440	TCACGGAGGCACAGGCAC	62.314	66.667	0.00	0.00	43.71	5.01
151	156	4.320456	CACGGAGGCACAGGCACT	62.320	66.667	0.00	0.00	43.71	4.40
152	157	2.603473	ACGGAGGCACAGGCACTA	60.603	61.111	0.00	0.00	43.71	2.74
153	158	2.185350	CGGAGGCACAGGCACTAG	59.815	66.667	0.00	0.00	43.71	2.57
244	261	1.442184	CCAGAGACGGACGTTCACG	60.442	63.158	0.00	0.25	46.33	4.35
272	289	2.094762	ACGAAGATCAAAAGACGGGG	57.905	50.000	0.00	0.00	0.00	5.73
400	433	3.038417	GCGGAATCGGCTGGATCG	61.038	66.667	5.50	0.00	33.02	3.69
406	439	2.671370	AATCGGCTGGATCGCATGCT	62.671	55.000	17.13	0.00	33.02	3.79
464	497	0.318107	ACTCCACGAACCAACGTACG	60.318	55.000	15.01	15.01	44.76	3.67
1032	2789	3.790437	CCAGCCCGCACCTCTCAT	61.790	66.667	0.00	0.00	0.00	2.90
1043	2802	3.243035	CGCACCTCTCATTCTACTCTCAG	60.243	52.174	0.00	0.00	0.00	3.35
1070	2834	1.212935	CAAAATCTCCATCCCCTCCGT	59.787	52.381	0.00	0.00	0.00	4.69
1238	3057	1.444553	CAAGTCCGTCAGCGTCTCC	60.445	63.158	0.00	0.00	36.15	3.71
1585	3448	1.335597	CGACAGCCAGTAGACGAACAA	60.336	52.381	0.00	0.00	0.00	2.83
1600	3463	0.516877	AACAACGTCGACATGCCATG	59.483	50.000	17.16	2.40	0.00	3.66
1675	3547	7.519032	TTGGAGTTTTTAGAACCAATTCGAT	57.481	32.000	0.00	0.00	40.04	3.59
1676	3548	8.624367	TTGGAGTTTTTAGAACCAATTCGATA	57.376	30.769	0.00	0.00	40.04	2.92
1677	3549	8.036273	TGGAGTTTTTAGAACCAATTCGATAC	57.964	34.615	0.00	0.00	40.04	2.24
1678	3550	7.120138	TGGAGTTTTTAGAACCAATTCGATACC	59.880	37.037	0.00	0.00	40.04	2.73
1679	3551	7.336176	GGAGTTTTTAGAACCAATTCGATACCT	59.664	37.037	0.00	0.00	40.04	3.08
1680	3552	8.040716	AGTTTTTAGAACCAATTCGATACCTG	57.959	34.615	0.00	0.00	40.04	4.00
1681	3553	6.431198	TTTTAGAACCAATTCGATACCTGC	57.569	37.500	0.00	0.00	40.04	4.85
1682	3554	2.919228	AGAACCAATTCGATACCTGCC	58.081	47.619	0.00	0.00	40.04	4.85
1683	3555	2.505819	AGAACCAATTCGATACCTGCCT	59.494	45.455	0.00	0.00	40.04	4.75
1684	3556	2.332063	ACCAATTCGATACCTGCCTG	57.668	50.000	0.00	0.00	0.00	4.85
1685	3557	1.134098	ACCAATTCGATACCTGCCTGG	60.134	52.381	0.00	0.00	42.93	4.45
1686	3558	1.140852	CCAATTCGATACCTGCCTGGA	59.859	52.381	0.00	0.00	39.71	3.86
1687	3559	2.487934	CAATTCGATACCTGCCTGGAG	58.512	52.381	0.00	0.00	39.71	3.86
1688	3560	2.088104	ATTCGATACCTGCCTGGAGA	57.912	50.000	0.00	0.00	39.71	3.71
1689	3561	1.403814	TTCGATACCTGCCTGGAGAG	58.596	55.000	0.00	0.00	39.71	3.20
1716	3588	0.174162	GCCCGTCCGTAACTGTACAT	59.826	55.000	0.00	0.00	0.00	2.29
1729	3601	8.181573	CCGTAACTGTACATAATGCATTTTTCT	58.818	33.333	18.75	0.00	0.00	2.52
1779	3651	4.494350	TCAAGAAGCAAAGCAATCACTC	57.506	40.909	0.00	0.00	0.00	3.51
1792	3664	3.433615	GCAATCACTCTTTGAGCTAACGT	59.566	43.478	0.00	0.00	37.77	3.99
1804	3676	8.615211	TCTTTGAGCTAACGTATACTTCGAATA	58.385	33.333	0.00	0.00	0.00	1.75
1839	3711	6.668323	ACTTACTCGTGATTTGGTGAATTTG	58.332	36.000	0.00	0.00	0.00	2.32
1846	3718	0.312416	TTTGGTGAATTTGCGGGTCG	59.688	50.000	0.00	0.00	0.00	4.79
1886	3758	3.601685	TGCCGTCTCTGCGTGTGA	61.602	61.111	0.00	0.00	0.00	3.58
1895	3767	4.798907	CGTCTCTGCGTGTGAGTTTATTAT	59.201	41.667	0.00	0.00	33.59	1.28
1896	3768	5.969435	CGTCTCTGCGTGTGAGTTTATTATA	59.031	40.000	0.00	0.00	33.59	0.98
1897	3769	6.637254	CGTCTCTGCGTGTGAGTTTATTATAT	59.363	38.462	0.00	0.00	33.59	0.86
1898	3770	7.801783	CGTCTCTGCGTGTGAGTTTATTATATA	59.198	37.037	0.00	0.00	33.59	0.86
1927	3799	4.781775	TTTGGAGGAGGTAAAACTGACA	57.218	40.909	0.00	0.00	0.00	3.58
1949	3821	8.397906	TGACAAAGATTCAGAAACAAACAGTAG	58.602	33.333	0.00	0.00	0.00	2.57
2001	3873	3.584848	AGAAGTGGTTAGAGCAACTCCAT	59.415	43.478	0.00	0.00	37.30	3.41
2092	3964	1.511850	GTCCAGTTTTGCATTTGGGC	58.488	50.000	0.00	0.00	0.00	5.36
2126	3998	2.715624	GCGCCGACCCATTTCATC	59.284	61.111	0.00	0.00	0.00	2.92
2129	4001	1.490693	CGCCGACCCATTTCATCTCG	61.491	60.000	0.00	0.00	0.00	4.04
2191	4063	1.736126	CAAGCGTTCATGTCTCATGCT	59.264	47.619	5.03	0.00	34.10	3.79
2207	4081	1.453379	GCTGACATCATGCCAGCCT	60.453	57.895	14.74	0.00	46.19	4.58
2245	4119	5.293079	GTCTCAGAAAGCACCATAGTTCATC	59.707	44.000	0.00	0.00	0.00	2.92
2250	4124	2.200081	AGCACCATAGTTCATCCTGGT	58.800	47.619	0.00	0.00	42.66	4.00
2450	4326	0.611714	GAACCACGGCCTCTTCCTTA	59.388	55.000	0.00	0.00	0.00	2.69
2522	4399	3.784338	CTTGCAAAAGCCACTTCTTTCA	58.216	40.909	0.00	0.00	35.41	2.69
2553	4430	2.125106	GTTGGCGGCCTCGATCTT	60.125	61.111	21.46	0.00	39.00	2.40
2561	4438	1.802069	GGCCTCGATCTTTAGCATCC	58.198	55.000	0.00	0.00	0.00	3.51
2613	4490	3.050275	GGCTTGCTTCTCGGCGTT	61.050	61.111	6.85	0.00	34.52	4.84

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	5.239525	GCAGTAAAGGACAGTTCTGATGTTT	59.760	40.000	6.83	5.40	0.00	2.83
75	79	2.364324	ACGCAGTAAAGGACAGTTCTGA	59.636	45.455	6.83	0.00	41.94	3.27
121	126	1.892819	CTCCGTGAGTCTGTGGGCAT	61.893	60.000	0.00	0.00	0.00	4.40
122	127	2.523168	TCCGTGAGTCTGTGGGCA	60.523	61.111	0.00	0.00	0.00	5.36
137	142	2.124942	GCTAGTGCCTGTGCCTCC	60.125	66.667	0.00	0.00	36.33	4.30
148	153	2.157834	TTAACACACCGTGGCTAGTG	57.842	50.000	3.03	5.50	37.94	2.74
149	154	2.158928	TGTTTAACACACCGTGGCTAGT	60.159	45.455	3.03	0.00	37.94	2.57
150	155	2.478894	CTGTTTAACACACCGTGGCTAG	59.521	50.000	3.03	0.00	37.94	3.42
151	156	2.102757	TCTGTTTAACACACCGTGGCTA	59.897	45.455	3.03	0.00	37.94	3.93
152	157	1.134340	TCTGTTTAACACACCGTGGCT	60.134	47.619	3.03	0.00	37.94	4.75
153	158	1.263217	CTCTGTTTAACACACCGTGGC	59.737	52.381	3.03	0.00	37.94	5.01
230	247	1.727511	TTCACCGTGAACGTCCGTCT	61.728	55.000	9.99	0.00	37.74	4.18
244	261	5.681543	GTCTTTTGATCTTCGTTGTTTCACC	59.318	40.000	0.00	0.00	0.00	4.02
272	289	0.106918	TCCGGCTCTCTCTTCCTCTC	60.107	60.000	0.00	0.00	0.00	3.20
464	497	0.608640	ATCTGTTCACTCGGACCCAC	59.391	55.000	0.00	0.00	0.00	4.61
469	502	1.135774	CGTCGAATCTGTTCACTCGGA	60.136	52.381	0.00	0.00	33.86	4.55
470	503	1.135774	TCGTCGAATCTGTTCACTCGG	60.136	52.381	0.00	0.00	33.86	4.63
727	781	3.423154	GCACGCTGAAAGGACGGG	61.423	66.667	0.00	0.00	0.00	5.28
841	2556	3.525800	ATTTTAGGACTGGTGCCAACT	57.474	42.857	0.00	0.00	0.00	3.16
1032	2789	5.623956	TTTTGGTGGTTCTGAGAGTAGAA	57.376	39.130	0.00	0.00	34.46	2.10
1043	2802	2.760650	GGGATGGAGATTTTGGTGGTTC	59.239	50.000	0.00	0.00	0.00	3.62
1238	3057	3.077556	CTGGTGGAGGACGGGGAG	61.078	72.222	0.00	0.00	0.00	4.30
1585	3448	2.819595	GCCATGGCATGTCGACGT	60.820	61.111	32.08	7.97	41.49	4.34
1600	3463	9.643693	CTACTAGTACTACTCTACTATCTTGCC	57.356	40.741	0.00	0.00	30.44	4.52
1631	3503	6.225318	TCCAATTCTTCAGGCAATTTCTTTG	58.775	36.000	0.00	0.00	38.43	2.77
1675	3547	1.833630	CATCAACTCTCCAGGCAGGTA	59.166	52.381	0.00	0.00	39.02	3.08
1676	3548	0.617413	CATCAACTCTCCAGGCAGGT	59.383	55.000	0.00	0.00	39.02	4.00
1677	3549	0.907486	TCATCAACTCTCCAGGCAGG	59.093	55.000	0.00	0.00	39.47	4.85
1678	3550	1.743091	GCTCATCAACTCTCCAGGCAG	60.743	57.143	0.00	0.00	0.00	4.85
1679	3551	0.251354	GCTCATCAACTCTCCAGGCA	59.749	55.000	0.00	0.00	0.00	4.75
1680	3552	0.463474	GGCTCATCAACTCTCCAGGC	60.463	60.000	0.00	0.00	0.00	4.85
1681	3553	0.179936	GGGCTCATCAACTCTCCAGG	59.820	60.000	0.00	0.00	0.00	4.45
1682	3554	0.179089	CGGGCTCATCAACTCTCCAG	60.179	60.000	0.00	0.00	0.00	3.86
1683	3555	0.904865	ACGGGCTCATCAACTCTCCA	60.905	55.000	0.00	0.00	0.00	3.86
1684	3556	0.179097	GACGGGCTCATCAACTCTCC	60.179	60.000	0.00	0.00	0.00	3.71
1685	3557	0.179097	GGACGGGCTCATCAACTCTC	60.179	60.000	0.00	0.00	0.00	3.20
1686	3558	1.901085	GGACGGGCTCATCAACTCT	59.099	57.895	0.00	0.00	0.00	3.24
1687	3559	1.519455	CGGACGGGCTCATCAACTC	60.519	63.158	0.00	0.00	0.00	3.01
1688	3560	0.968901	TACGGACGGGCTCATCAACT	60.969	55.000	0.00	0.00	0.00	3.16
1689	3561	0.108520	TTACGGACGGGCTCATCAAC	60.109	55.000	0.00	0.00	0.00	3.18
1729	3601	6.094742	TCAATTAACGCCATTCATGCTTTCTA	59.905	34.615	0.00	0.00	0.00	2.10
1732	3604	5.070770	TCAATTAACGCCATTCATGCTTT	57.929	34.783	0.00	0.00	0.00	3.51
1734	3606	3.947196	TCTCAATTAACGCCATTCATGCT	59.053	39.130	0.00	0.00	0.00	3.79
1779	3651	7.681125	ATTCGAAGTATACGTTAGCTCAAAG	57.319	36.000	3.35	0.00	0.00	2.77
1804	3676	8.926710	CAAATCACGAGTAAGTAAATCAGAGTT	58.073	33.333	0.00	0.00	0.00	3.01
1839	3711	1.466950	TCATTTTCATGAACGACCCGC	59.533	47.619	7.89	0.00	36.41	6.13
1870	3742	2.807045	CTCACACGCAGAGACGGC	60.807	66.667	0.00	0.00	37.37	5.68
1895	3767	8.495160	TTTACCTCCTCCAAATACCGATTATA	57.505	34.615	0.00	0.00	0.00	0.98
1896	3768	7.383156	TTTACCTCCTCCAAATACCGATTAT	57.617	36.000	0.00	0.00	0.00	1.28
1897	3769	6.811634	TTTACCTCCTCCAAATACCGATTA	57.188	37.500	0.00	0.00	0.00	1.75
1898	3770	5.703730	TTTACCTCCTCCAAATACCGATT	57.296	39.130	0.00	0.00	0.00	3.34
1927	3799	7.255277	GGCTCTACTGTTTGTTTCTGAATCTTT	60.255	37.037	0.00	0.00	0.00	2.52
2092	3964	3.086309	CGTTGGACGCATTACCGG	58.914	61.111	0.00	0.00	33.65	5.28
2172	4044	1.736126	CAGCATGAGACATGAACGCTT	59.264	47.619	14.65	0.00	39.69	4.68
2191	4063	1.751544	GCAGGCTGGCATGATGTCA	60.752	57.895	17.64	0.00	0.00	3.58
2306	4181	3.115892	GCGATGGCGTGGTCGAAA	61.116	61.111	9.11	0.00	40.11	3.46
2522	4399	1.734388	GCCAACGCCAAGACAAAGGT	61.734	55.000	0.00	0.00	0.00	3.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.