Multiple sequence alignment - TraesCS6B01G399100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G399100 chr6B 100.000 2643 0 0 1 2643 674839224 674841866 0.000000e+00 4881.0
1 TraesCS6B01G399100 chr6B 88.517 209 20 3 2341 2545 674926684 674926892 1.570000e-62 250.0
2 TraesCS6B01G399100 chr6D 90.175 1710 98 29 245 1907 446461001 446462687 0.000000e+00 2163.0
3 TraesCS6B01G399100 chr6D 84.551 479 38 21 1989 2445 446462898 446463362 2.410000e-120 442.0
4 TraesCS6B01G399100 chr6D 86.093 151 13 6 81 223 446447818 446447968 3.520000e-34 156.0
5 TraesCS6B01G399100 chr6D 92.857 70 5 0 1 70 446447617 446447686 4.650000e-18 102.0
6 TraesCS6B01G399100 chr6D 79.592 147 16 8 2209 2342 446478022 446478167 2.800000e-15 93.5
7 TraesCS6B01G399100 chr6A 89.970 1316 88 22 613 1907 593232498 593233790 0.000000e+00 1659.0
8 TraesCS6B01G399100 chr6A 88.584 438 34 10 1984 2413 593234000 593234429 3.900000e-143 518.0
9 TraesCS6B01G399100 chr6A 95.706 163 7 0 445 607 593232298 593232460 2.020000e-66 263.0
10 TraesCS6B01G399100 chr6A 81.356 236 24 9 2209 2426 593285413 593285646 9.720000e-40 174.0
11 TraesCS6B01G399100 chr6A 88.571 70 6 1 2443 2510 593283707 593283776 1.690000e-12 84.2
12 TraesCS6B01G399100 chr6A 90.476 63 5 1 2449 2510 593234519 593234581 6.060000e-12 82.4
13 TraesCS6B01G399100 chr6A 95.918 49 1 1 360 407 593232263 593232311 7.840000e-11 78.7
14 TraesCS6B01G399100 chrUn 89.456 294 22 7 2260 2545 79304215 79304507 1.930000e-96 363.0
15 TraesCS6B01G399100 chrUn 89.116 294 23 7 2260 2545 79272551 79272843 9.000000e-95 357.0
16 TraesCS6B01G399100 chrUn 92.697 178 11 1 2260 2435 479190391 479190568 3.380000e-64 255.0
17 TraesCS6B01G399100 chrUn 88.517 209 20 3 2341 2545 79245898 79246106 1.570000e-62 250.0
18 TraesCS6B01G399100 chrUn 89.623 106 8 1 2324 2426 79279878 79279983 5.940000e-27 132.0
19 TraesCS6B01G399100 chrUn 87.736 106 10 1 2324 2426 79311557 79311662 1.280000e-23 121.0
20 TraesCS6B01G399100 chrUn 89.362 47 3 1 2308 2352 79247982 79248028 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G399100 chr6B 674839224 674841866 2642 False 4881.00 4881 100.0000 1 2643 1 chr6B.!!$F1 2642
1 TraesCS6B01G399100 chr6D 446461001 446463362 2361 False 1302.50 2163 87.3630 245 2445 2 chr6D.!!$F3 2200
2 TraesCS6B01G399100 chr6A 593232263 593234581 2318 False 520.22 1659 92.1308 360 2510 5 chr6A.!!$F1 2150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 941 0.173708 GGAAGGTAGACAGGAGTGCG 59.826 60.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2614 2934 0.178767 AGAGAGCACAGCACACACAA 59.821 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.829507 TGTTTCCATTTCATTTGTCTACAATTT 57.170 25.926 0.00 0.00 35.55 1.82
55 56 9.230122 TCTTCATTTATAAAGCTTGACATCACA 57.770 29.630 0.00 0.00 0.00 3.58
56 57 9.844790 CTTCATTTATAAAGCTTGACATCACAA 57.155 29.630 0.00 0.00 0.00 3.33
57 58 9.844790 TTCATTTATAAAGCTTGACATCACAAG 57.155 29.630 0.00 0.00 46.69 3.16
58 59 8.461222 TCATTTATAAAGCTTGACATCACAAGG 58.539 33.333 0.00 0.00 44.87 3.61
63 64 3.715628 GCTTGACATCACAAGGTTTGT 57.284 42.857 0.00 0.00 44.87 2.83
64 65 4.829064 GCTTGACATCACAAGGTTTGTA 57.171 40.909 0.00 0.00 44.87 2.41
65 66 5.376854 GCTTGACATCACAAGGTTTGTAT 57.623 39.130 0.00 0.00 44.87 2.29
66 67 5.393962 GCTTGACATCACAAGGTTTGTATC 58.606 41.667 0.00 0.00 44.87 2.24
67 68 5.619981 GCTTGACATCACAAGGTTTGTATCC 60.620 44.000 0.00 0.00 44.87 2.59
68 69 5.241403 TGACATCACAAGGTTTGTATCCT 57.759 39.130 0.00 0.00 43.23 3.24
69 70 5.003160 TGACATCACAAGGTTTGTATCCTG 58.997 41.667 0.00 0.00 43.23 3.86
70 71 5.221823 TGACATCACAAGGTTTGTATCCTGA 60.222 40.000 0.00 0.00 43.23 3.86
71 72 5.819991 ACATCACAAGGTTTGTATCCTGAT 58.180 37.500 0.00 0.00 43.23 2.90
72 73 6.957631 ACATCACAAGGTTTGTATCCTGATA 58.042 36.000 0.00 0.00 43.23 2.15
73 74 6.823689 ACATCACAAGGTTTGTATCCTGATAC 59.176 38.462 9.81 9.81 43.23 2.24
74 75 6.620877 TCACAAGGTTTGTATCCTGATACT 57.379 37.500 16.07 0.00 43.23 2.12
75 76 6.406370 TCACAAGGTTTGTATCCTGATACTG 58.594 40.000 16.07 8.83 43.23 2.74
76 77 5.065218 CACAAGGTTTGTATCCTGATACTGC 59.935 44.000 16.07 7.81 43.23 4.40
77 78 4.423625 AGGTTTGTATCCTGATACTGCC 57.576 45.455 16.07 14.22 43.04 4.85
78 79 3.780294 AGGTTTGTATCCTGATACTGCCA 59.220 43.478 16.07 0.00 43.04 4.92
79 80 3.877508 GGTTTGTATCCTGATACTGCCAC 59.122 47.826 16.07 8.60 43.04 5.01
80 81 3.452755 TTGTATCCTGATACTGCCACG 57.547 47.619 16.07 0.00 43.04 4.94
81 82 2.384828 TGTATCCTGATACTGCCACGT 58.615 47.619 16.07 0.00 43.04 4.49
82 83 2.100749 TGTATCCTGATACTGCCACGTG 59.899 50.000 9.08 9.08 43.04 4.49
83 84 0.179073 ATCCTGATACTGCCACGTGC 60.179 55.000 10.91 6.53 41.77 5.34
84 85 2.167219 CCTGATACTGCCACGTGCG 61.167 63.158 10.91 4.74 45.60 5.34
85 86 1.446099 CTGATACTGCCACGTGCGT 60.446 57.895 10.91 9.20 45.60 5.24
86 87 1.686566 CTGATACTGCCACGTGCGTG 61.687 60.000 16.71 16.71 45.60 5.34
87 88 1.736645 GATACTGCCACGTGCGTGT 60.737 57.895 20.92 10.14 45.60 4.49
88 89 1.955529 GATACTGCCACGTGCGTGTG 61.956 60.000 20.92 14.12 45.60 3.82
89 90 2.428960 ATACTGCCACGTGCGTGTGA 62.429 55.000 20.92 8.04 45.60 3.58
90 91 3.705638 CTGCCACGTGCGTGTGAG 61.706 66.667 20.92 13.03 45.60 3.51
93 94 2.967076 CCACGTGCGTGTGAGCTT 60.967 61.111 20.92 0.00 44.02 3.74
94 95 2.534019 CCACGTGCGTGTGAGCTTT 61.534 57.895 20.92 0.00 44.02 3.51
95 96 1.351707 CACGTGCGTGTGAGCTTTT 59.648 52.632 15.60 0.00 42.55 2.27
96 97 0.579630 CACGTGCGTGTGAGCTTTTA 59.420 50.000 15.60 0.00 42.55 1.52
97 98 1.004398 CACGTGCGTGTGAGCTTTTAA 60.004 47.619 15.60 0.00 42.55 1.52
98 99 1.004292 ACGTGCGTGTGAGCTTTTAAC 60.004 47.619 0.00 0.00 38.13 2.01
99 100 1.658968 GTGCGTGTGAGCTTTTAACG 58.341 50.000 7.54 7.54 38.13 3.18
100 101 0.584396 TGCGTGTGAGCTTTTAACGG 59.416 50.000 12.17 0.00 38.13 4.44
101 102 0.584876 GCGTGTGAGCTTTTAACGGT 59.415 50.000 12.17 0.00 34.91 4.83
102 103 1.398071 GCGTGTGAGCTTTTAACGGTC 60.398 52.381 12.17 0.00 34.91 4.79
103 104 1.862201 CGTGTGAGCTTTTAACGGTCA 59.138 47.619 0.00 0.00 36.63 4.02
104 105 2.285756 CGTGTGAGCTTTTAACGGTCAA 59.714 45.455 4.96 0.00 40.16 3.18
105 106 3.614588 GTGTGAGCTTTTAACGGTCAAC 58.385 45.455 4.96 3.48 40.16 3.18
106 107 3.064271 GTGTGAGCTTTTAACGGTCAACA 59.936 43.478 4.96 4.05 40.16 3.33
107 108 3.880490 TGTGAGCTTTTAACGGTCAACAT 59.120 39.130 4.96 0.00 40.16 2.71
108 109 4.219033 GTGAGCTTTTAACGGTCAACATG 58.781 43.478 4.96 0.00 40.16 3.21
109 110 3.234386 GAGCTTTTAACGGTCAACATGC 58.766 45.455 0.00 0.00 0.00 4.06
110 111 2.030274 AGCTTTTAACGGTCAACATGCC 60.030 45.455 0.00 0.00 0.00 4.40
111 112 2.287909 GCTTTTAACGGTCAACATGCCA 60.288 45.455 0.00 0.00 0.00 4.92
112 113 3.305110 CTTTTAACGGTCAACATGCCAC 58.695 45.455 0.00 0.00 0.00 5.01
113 114 0.869068 TTAACGGTCAACATGCCACG 59.131 50.000 0.00 0.00 0.00 4.94
114 115 0.249953 TAACGGTCAACATGCCACGT 60.250 50.000 0.00 0.00 35.95 4.49
115 116 1.781025 AACGGTCAACATGCCACGTG 61.781 55.000 9.08 9.08 34.54 4.49
116 117 2.953821 GGTCAACATGCCACGTGG 59.046 61.111 30.66 30.66 38.53 4.94
144 145 2.969821 GGGGGCCATATATGTCACAA 57.030 50.000 4.39 0.00 0.00 3.33
145 146 3.456380 GGGGGCCATATATGTCACAAT 57.544 47.619 4.39 0.00 0.00 2.71
146 147 3.356290 GGGGGCCATATATGTCACAATC 58.644 50.000 4.39 0.00 0.00 2.67
147 148 3.009723 GGGGCCATATATGTCACAATCG 58.990 50.000 4.39 0.00 0.00 3.34
148 149 3.559171 GGGGCCATATATGTCACAATCGT 60.559 47.826 4.39 0.00 0.00 3.73
149 150 4.072131 GGGCCATATATGTCACAATCGTT 58.928 43.478 4.39 0.00 0.00 3.85
150 151 4.154195 GGGCCATATATGTCACAATCGTTC 59.846 45.833 4.39 0.00 0.00 3.95
151 152 4.997395 GGCCATATATGTCACAATCGTTCT 59.003 41.667 11.73 0.00 0.00 3.01
152 153 5.470098 GGCCATATATGTCACAATCGTTCTT 59.530 40.000 11.73 0.00 0.00 2.52
153 154 6.649141 GGCCATATATGTCACAATCGTTCTTA 59.351 38.462 11.73 0.00 0.00 2.10
154 155 7.172532 GGCCATATATGTCACAATCGTTCTTAA 59.827 37.037 11.73 0.00 0.00 1.85
155 156 8.721478 GCCATATATGTCACAATCGTTCTTAAT 58.279 33.333 11.73 0.00 0.00 1.40
161 162 6.370593 TGTCACAATCGTTCTTAATTTGAGC 58.629 36.000 0.00 0.00 0.00 4.26
162 163 6.017523 TGTCACAATCGTTCTTAATTTGAGCA 60.018 34.615 0.00 0.00 0.00 4.26
163 164 6.303259 GTCACAATCGTTCTTAATTTGAGCAC 59.697 38.462 0.00 0.00 0.00 4.40
164 165 6.017523 TCACAATCGTTCTTAATTTGAGCACA 60.018 34.615 0.00 0.00 0.00 4.57
165 166 6.636447 CACAATCGTTCTTAATTTGAGCACAA 59.364 34.615 0.00 0.00 0.00 3.33
166 167 7.326789 CACAATCGTTCTTAATTTGAGCACAAT 59.673 33.333 0.00 0.00 35.85 2.71
167 168 7.538678 ACAATCGTTCTTAATTTGAGCACAATC 59.461 33.333 0.00 0.00 35.85 2.67
168 169 5.617609 TCGTTCTTAATTTGAGCACAATCG 58.382 37.500 0.00 0.00 35.85 3.34
169 170 5.407084 TCGTTCTTAATTTGAGCACAATCGA 59.593 36.000 0.00 0.00 35.85 3.59
170 171 6.092122 TCGTTCTTAATTTGAGCACAATCGAT 59.908 34.615 0.00 0.00 35.85 3.59
171 172 6.409185 CGTTCTTAATTTGAGCACAATCGATC 59.591 38.462 0.00 0.00 35.85 3.69
172 173 6.983474 TCTTAATTTGAGCACAATCGATCA 57.017 33.333 0.00 0.00 35.85 2.92
173 174 7.558161 TCTTAATTTGAGCACAATCGATCAT 57.442 32.000 0.00 0.00 35.85 2.45
174 175 7.988737 TCTTAATTTGAGCACAATCGATCATT 58.011 30.769 0.00 0.00 35.85 2.57
175 176 9.108284 TCTTAATTTGAGCACAATCGATCATTA 57.892 29.630 0.00 0.00 35.85 1.90
176 177 9.720667 CTTAATTTGAGCACAATCGATCATTAA 57.279 29.630 0.00 3.75 35.85 1.40
178 179 7.975866 ATTTGAGCACAATCGATCATTAAAC 57.024 32.000 0.00 0.00 35.85 2.01
179 180 6.493449 TTGAGCACAATCGATCATTAAACA 57.507 33.333 0.00 0.00 0.00 2.83
180 181 6.110543 TGAGCACAATCGATCATTAAACAG 57.889 37.500 0.00 0.00 0.00 3.16
181 182 5.065090 TGAGCACAATCGATCATTAAACAGG 59.935 40.000 0.00 0.00 0.00 4.00
182 183 5.185454 AGCACAATCGATCATTAAACAGGA 58.815 37.500 0.00 0.00 0.00 3.86
183 184 5.295292 AGCACAATCGATCATTAAACAGGAG 59.705 40.000 0.00 0.00 0.00 3.69
184 185 5.065218 GCACAATCGATCATTAAACAGGAGT 59.935 40.000 0.00 0.00 0.00 3.85
185 186 6.481134 CACAATCGATCATTAAACAGGAGTG 58.519 40.000 0.00 0.00 0.00 3.51
186 187 6.313658 CACAATCGATCATTAAACAGGAGTGA 59.686 38.462 0.00 0.00 0.00 3.41
187 188 7.011763 CACAATCGATCATTAAACAGGAGTGAT 59.988 37.037 0.00 0.00 32.59 3.06
188 189 7.011763 ACAATCGATCATTAAACAGGAGTGATG 59.988 37.037 0.00 0.00 30.24 3.07
189 190 5.977635 TCGATCATTAAACAGGAGTGATGT 58.022 37.500 0.00 0.00 30.24 3.06
190 191 6.406370 TCGATCATTAAACAGGAGTGATGTT 58.594 36.000 0.00 0.00 42.55 2.71
192 193 7.390440 TCGATCATTAAACAGGAGTGATGTTTT 59.610 33.333 9.11 0.00 46.04 2.43
193 194 8.023128 CGATCATTAAACAGGAGTGATGTTTTT 58.977 33.333 9.11 0.00 46.04 1.94
216 217 7.945033 TTTGCAAAAATTAGAGCTAAAGTGG 57.055 32.000 10.02 0.00 0.00 4.00
217 218 6.648879 TGCAAAAATTAGAGCTAAAGTGGT 57.351 33.333 0.00 0.00 0.00 4.16
218 219 6.446318 TGCAAAAATTAGAGCTAAAGTGGTG 58.554 36.000 0.00 0.00 0.00 4.17
219 220 6.040391 TGCAAAAATTAGAGCTAAAGTGGTGT 59.960 34.615 0.00 0.00 0.00 4.16
220 221 6.923508 GCAAAAATTAGAGCTAAAGTGGTGTT 59.076 34.615 0.00 0.00 0.00 3.32
221 222 7.438160 GCAAAAATTAGAGCTAAAGTGGTGTTT 59.562 33.333 0.00 0.00 0.00 2.83
222 223 9.313118 CAAAAATTAGAGCTAAAGTGGTGTTTT 57.687 29.630 0.00 0.00 0.00 2.43
223 224 9.529325 AAAAATTAGAGCTAAAGTGGTGTTTTC 57.471 29.630 0.00 0.00 0.00 2.29
224 225 8.465273 AAATTAGAGCTAAAGTGGTGTTTTCT 57.535 30.769 0.00 0.00 0.00 2.52
225 226 6.861065 TTAGAGCTAAAGTGGTGTTTTCTG 57.139 37.500 0.00 0.00 0.00 3.02
226 227 4.781934 AGAGCTAAAGTGGTGTTTTCTGT 58.218 39.130 0.00 0.00 0.00 3.41
227 228 4.816925 AGAGCTAAAGTGGTGTTTTCTGTC 59.183 41.667 0.00 0.00 0.00 3.51
228 229 4.523083 AGCTAAAGTGGTGTTTTCTGTCA 58.477 39.130 0.00 0.00 0.00 3.58
229 230 4.947388 AGCTAAAGTGGTGTTTTCTGTCAA 59.053 37.500 0.00 0.00 0.00 3.18
230 231 5.417580 AGCTAAAGTGGTGTTTTCTGTCAAA 59.582 36.000 0.00 0.00 0.00 2.69
231 232 5.743872 GCTAAAGTGGTGTTTTCTGTCAAAG 59.256 40.000 0.00 0.00 0.00 2.77
232 233 5.722021 AAAGTGGTGTTTTCTGTCAAAGT 57.278 34.783 0.00 0.00 0.00 2.66
233 234 5.722021 AAGTGGTGTTTTCTGTCAAAGTT 57.278 34.783 0.00 0.00 0.00 2.66
234 235 5.722021 AGTGGTGTTTTCTGTCAAAGTTT 57.278 34.783 0.00 0.00 0.00 2.66
235 236 5.469479 AGTGGTGTTTTCTGTCAAAGTTTG 58.531 37.500 9.44 9.44 0.00 2.93
236 237 5.010617 AGTGGTGTTTTCTGTCAAAGTTTGT 59.989 36.000 15.08 0.00 0.00 2.83
237 238 6.207810 AGTGGTGTTTTCTGTCAAAGTTTGTA 59.792 34.615 15.08 5.50 0.00 2.41
238 239 6.864165 GTGGTGTTTTCTGTCAAAGTTTGTAA 59.136 34.615 15.08 4.45 0.00 2.41
239 240 7.382759 GTGGTGTTTTCTGTCAAAGTTTGTAAA 59.617 33.333 15.08 9.06 0.00 2.01
240 241 7.596995 TGGTGTTTTCTGTCAAAGTTTGTAAAG 59.403 33.333 15.08 10.92 0.00 1.85
241 242 7.597369 GGTGTTTTCTGTCAAAGTTTGTAAAGT 59.403 33.333 15.08 0.00 0.00 2.66
242 243 8.424731 GTGTTTTCTGTCAAAGTTTGTAAAGTG 58.575 33.333 15.08 2.46 0.00 3.16
243 244 7.596995 TGTTTTCTGTCAAAGTTTGTAAAGTGG 59.403 33.333 15.08 1.57 0.00 4.00
264 265 6.037726 GTGGTAGTTTTTGTTGGTCGAATTT 58.962 36.000 0.00 0.00 0.00 1.82
265 266 6.020201 GTGGTAGTTTTTGTTGGTCGAATTTG 60.020 38.462 0.00 0.00 0.00 2.32
266 267 6.037726 GGTAGTTTTTGTTGGTCGAATTTGT 58.962 36.000 0.00 0.00 0.00 2.83
268 269 4.867608 AGTTTTTGTTGGTCGAATTTGTGG 59.132 37.500 0.00 0.00 0.00 4.17
269 270 4.457834 TTTTGTTGGTCGAATTTGTGGT 57.542 36.364 0.00 0.00 0.00 4.16
270 271 5.578005 TTTTGTTGGTCGAATTTGTGGTA 57.422 34.783 0.00 0.00 0.00 3.25
304 309 1.881324 GTAGTCCGCTAGGTCCAGATC 59.119 57.143 0.00 0.00 39.05 2.75
305 310 0.259065 AGTCCGCTAGGTCCAGATCA 59.741 55.000 0.00 0.00 39.05 2.92
313 318 1.434188 AGGTCCAGATCAACACACCA 58.566 50.000 0.00 0.00 0.00 4.17
319 324 1.875514 CAGATCAACACACCACCACTG 59.124 52.381 0.00 0.00 0.00 3.66
410 431 1.530183 AGTCCCCGGCCGTATACTC 60.530 63.158 26.12 9.17 0.00 2.59
443 464 4.067192 TCAGAACGGCTACTATACGCATA 58.933 43.478 0.00 0.00 0.00 3.14
444 465 4.698780 TCAGAACGGCTACTATACGCATAT 59.301 41.667 0.00 0.00 0.00 1.78
449 470 3.028850 GGCTACTATACGCATATCCCCA 58.971 50.000 0.00 0.00 0.00 4.96
602 633 1.026718 CACTTCCGGTGGCTCCATTC 61.027 60.000 0.00 0.00 41.90 2.67
607 638 1.143838 CGGTGGCTCCATTCGATCA 59.856 57.895 6.39 0.00 35.57 2.92
611 674 0.465705 TGGCTCCATTCGATCAGGAC 59.534 55.000 0.00 0.00 0.00 3.85
617 680 2.974794 TCCATTCGATCAGGACCATCAT 59.025 45.455 0.00 0.00 0.00 2.45
621 684 5.409211 CATTCGATCAGGACCATCATCTAG 58.591 45.833 0.00 0.00 0.00 2.43
678 741 3.496331 ACATCCGGCCATAATTAAAGGG 58.504 45.455 2.24 3.83 0.00 3.95
682 745 2.661718 CGGCCATAATTAAAGGGTGGT 58.338 47.619 2.24 0.00 32.56 4.16
723 786 1.075979 CATCCGTCGTCGTTGCATGA 61.076 55.000 0.00 0.00 35.01 3.07
724 787 0.802222 ATCCGTCGTCGTTGCATGAG 60.802 55.000 0.00 0.00 35.01 2.90
781 845 5.406780 CCTACAGACAGAGACATTGTCAAAC 59.593 44.000 18.57 9.45 45.72 2.93
783 847 3.185188 CAGACAGAGACATTGTCAAACCG 59.815 47.826 18.57 5.15 45.72 4.44
825 890 9.927668 TGGTTTTGGAATTTTTAATTTTGCAAA 57.072 22.222 8.05 8.05 38.40 3.68
841 906 8.814038 ATTTTGCAAAGTCCTGTAGATAGATT 57.186 30.769 12.41 0.00 0.00 2.40
876 941 0.173708 GGAAGGTAGACAGGAGTGCG 59.826 60.000 0.00 0.00 0.00 5.34
930 1000 8.251026 ACCGATGTATATATACCATCTGTTGTG 58.749 37.037 18.20 8.50 32.33 3.33
931 1001 8.466798 CCGATGTATATATACCATCTGTTGTGA 58.533 37.037 18.20 0.00 32.33 3.58
939 1009 4.478206 ACCATCTGTTGTGATGTCTAGG 57.522 45.455 0.00 0.00 41.47 3.02
962 1032 2.922740 TCAAACCACTTCGCCTACTT 57.077 45.000 0.00 0.00 0.00 2.24
1059 1132 8.499403 AAGCAGTATTCTCTTAACCAAATCTC 57.501 34.615 0.00 0.00 0.00 2.75
1087 1160 4.416738 GGGAGCTCCAGCCGCTTT 62.417 66.667 33.29 0.00 43.38 3.51
1096 1169 2.985847 AGCCGCTTTTCACTGGGC 60.986 61.111 0.00 0.00 44.07 5.36
1099 1172 4.741781 CGCTTTTCACTGGGCGCG 62.742 66.667 0.00 0.00 41.08 6.86
1226 1302 5.597813 CACTGATGTAAGTGGTTCTGAAC 57.402 43.478 12.05 12.05 43.22 3.18
1250 1327 6.998074 ACTTTTCATCACCTGTTGTCTGAATA 59.002 34.615 0.00 0.00 32.04 1.75
1254 1331 7.660030 TCATCACCTGTTGTCTGAATATCTA 57.340 36.000 0.00 0.00 0.00 1.98
1258 1335 7.907389 TCACCTGTTGTCTGAATATCTAAACT 58.093 34.615 0.00 0.00 0.00 2.66
1259 1336 8.375506 TCACCTGTTGTCTGAATATCTAAACTT 58.624 33.333 0.00 0.00 0.00 2.66
1261 1338 8.375506 ACCTGTTGTCTGAATATCTAAACTTGA 58.624 33.333 0.00 0.00 0.00 3.02
1279 1356 8.565896 AAACTTGATATGTTCAGATGCTAACA 57.434 30.769 0.00 0.00 39.73 2.41
1310 1387 4.803088 TGTTCTTGAAAAATGCAGAAACCG 59.197 37.500 0.00 0.00 0.00 4.44
1312 1389 5.452078 TCTTGAAAAATGCAGAAACCGAT 57.548 34.783 0.00 0.00 0.00 4.18
1319 1396 1.533625 TGCAGAAACCGATTGGGAAG 58.466 50.000 3.39 0.00 40.75 3.46
1320 1397 1.073125 TGCAGAAACCGATTGGGAAGA 59.927 47.619 3.39 0.00 40.75 2.87
1321 1398 2.159382 GCAGAAACCGATTGGGAAGAA 58.841 47.619 3.39 0.00 40.75 2.52
1345 1422 0.736325 GTCGTCGATGTGGTCAAGGG 60.736 60.000 4.21 0.00 0.00 3.95
1346 1423 0.896479 TCGTCGATGTGGTCAAGGGA 60.896 55.000 4.21 0.00 0.00 4.20
1355 1432 0.842030 TGGTCAAGGGATCTGCTGGT 60.842 55.000 0.00 0.00 0.00 4.00
1357 1434 1.272147 GGTCAAGGGATCTGCTGGTTT 60.272 52.381 0.00 0.00 0.00 3.27
1369 1446 1.160137 GCTGGTTTGACAAGCGAGAT 58.840 50.000 16.32 0.00 32.63 2.75
1469 1546 2.659063 CCCGAGTGATCACAGCCCA 61.659 63.158 27.02 0.00 0.00 5.36
1541 1622 5.685728 TCCTCTCTCGATGATCTCTTGTAA 58.314 41.667 0.00 0.00 0.00 2.41
1568 1649 9.863650 AACAGAGTATTTATAGCTAGGTAGACA 57.136 33.333 7.83 0.00 0.00 3.41
1570 1651 8.455682 CAGAGTATTTATAGCTAGGTAGACAGC 58.544 40.741 7.83 0.00 38.09 4.40
1572 1653 5.646577 ATTTATAGCTAGGTAGACAGCGG 57.353 43.478 7.83 0.00 42.74 5.52
1611 1692 0.764890 TGTAAGCTCAAGCAGTGGGT 59.235 50.000 4.59 0.00 45.16 4.51
1635 1716 2.416747 TGCATGGCAATAGATAGCGTC 58.583 47.619 0.00 0.00 34.76 5.19
1688 1769 5.743026 TCAAATTTCAAGCAAGACGTGTA 57.257 34.783 0.00 0.00 0.00 2.90
1830 1917 2.703416 TCTCACATCAACATCAGGTGC 58.297 47.619 0.00 0.00 0.00 5.01
1893 1980 4.159321 TGACAAGAGCCAATTTGTTGACAA 59.841 37.500 4.92 0.00 37.63 3.18
1907 1994 1.593196 TGACAAGGAAGTGCGAAAGG 58.407 50.000 0.00 0.00 0.00 3.11
1909 1996 1.172812 ACAAGGAAGTGCGAAAGGCC 61.173 55.000 0.00 0.00 42.61 5.19
1910 1997 0.890996 CAAGGAAGTGCGAAAGGCCT 60.891 55.000 0.00 0.00 42.61 5.19
1911 1998 0.690762 AAGGAAGTGCGAAAGGCCTA 59.309 50.000 5.16 0.00 42.61 3.93
1913 2000 2.116238 AGGAAGTGCGAAAGGCCTATA 58.884 47.619 5.16 0.00 42.61 1.31
1916 2003 4.021016 AGGAAGTGCGAAAGGCCTATATAG 60.021 45.833 5.16 2.46 42.61 1.31
1917 2004 3.963428 AGTGCGAAAGGCCTATATAGG 57.037 47.619 22.63 22.63 46.42 2.57
1918 2005 2.567615 AGTGCGAAAGGCCTATATAGGG 59.432 50.000 26.76 12.32 43.82 3.53
1920 2007 3.007614 GTGCGAAAGGCCTATATAGGGAA 59.992 47.826 26.76 4.22 43.82 3.97
1921 2008 3.260884 TGCGAAAGGCCTATATAGGGAAG 59.739 47.826 26.76 5.30 43.82 3.46
1926 2066 3.808189 AGGCCTATATAGGGAAGTGCAT 58.192 45.455 26.76 8.96 43.82 3.96
1928 2068 3.430929 GGCCTATATAGGGAAGTGCATCG 60.431 52.174 26.76 1.13 43.82 3.84
1930 2070 4.100189 GCCTATATAGGGAAGTGCATCGAT 59.900 45.833 26.76 0.00 43.82 3.59
1944 2084 4.147449 CGATCGGTGCAGAGGCCA 62.147 66.667 7.38 0.00 40.13 5.36
1945 2085 2.202987 GATCGGTGCAGAGGCCAG 60.203 66.667 5.01 0.00 40.13 4.85
1946 2086 3.746949 GATCGGTGCAGAGGCCAGG 62.747 68.421 5.01 0.00 40.13 4.45
1962 2102 2.819348 GCCAGGAGGGTTTTCAACATCT 60.819 50.000 0.00 0.00 39.65 2.90
1966 2106 3.821033 AGGAGGGTTTTCAACATCTTTCG 59.179 43.478 0.00 0.00 0.00 3.46
1967 2107 3.568430 GGAGGGTTTTCAACATCTTTCGT 59.432 43.478 0.00 0.00 0.00 3.85
1977 2119 9.587772 TTTTCAACATCTTTCGTGGAAAAATTA 57.412 25.926 3.67 0.00 41.23 1.40
1979 2121 9.757227 TTCAACATCTTTCGTGGAAAAATTAAT 57.243 25.926 0.00 0.00 30.84 1.40
2014 2241 4.718961 ACAATGTAGTTGCAAGACTCCTT 58.281 39.130 0.00 0.00 41.69 3.36
2037 2264 3.773860 TTTCTTTGAAGCGAAGTTGCA 57.226 38.095 0.00 0.00 37.31 4.08
2047 2274 1.151668 CGAAGTTGCAAGACTCCTGG 58.848 55.000 0.00 0.00 0.00 4.45
2048 2275 0.877743 GAAGTTGCAAGACTCCTGGC 59.122 55.000 0.00 0.00 39.85 4.85
2053 2280 0.835971 TGCAAGACTCCTGGCACCTA 60.836 55.000 0.00 0.00 44.11 3.08
2054 2281 0.107945 GCAAGACTCCTGGCACCTAG 60.108 60.000 0.00 0.00 39.21 3.02
2055 2282 1.270907 CAAGACTCCTGGCACCTAGT 58.729 55.000 0.00 0.00 0.00 2.57
2056 2283 1.625818 CAAGACTCCTGGCACCTAGTT 59.374 52.381 0.00 0.00 0.00 2.24
2059 2286 1.137282 GACTCCTGGCACCTAGTTAGC 59.863 57.143 0.00 0.00 0.00 3.09
2061 2288 0.323999 TCCTGGCACCTAGTTAGCGA 60.324 55.000 0.00 0.00 0.00 4.93
2062 2289 0.103208 CCTGGCACCTAGTTAGCGAG 59.897 60.000 0.00 0.00 34.44 5.03
2063 2290 1.103803 CTGGCACCTAGTTAGCGAGA 58.896 55.000 4.93 0.00 36.38 4.04
2064 2291 1.066303 CTGGCACCTAGTTAGCGAGAG 59.934 57.143 4.93 0.00 36.38 3.20
2065 2292 1.104630 GGCACCTAGTTAGCGAGAGT 58.895 55.000 0.00 0.00 0.00 3.24
2066 2293 2.295885 GGCACCTAGTTAGCGAGAGTA 58.704 52.381 0.00 0.00 0.00 2.59
2067 2294 2.033174 GGCACCTAGTTAGCGAGAGTAC 59.967 54.545 0.00 0.00 0.00 2.73
2069 2296 3.377798 GCACCTAGTTAGCGAGAGTACTT 59.622 47.826 0.00 0.00 0.00 2.24
2070 2297 4.574013 GCACCTAGTTAGCGAGAGTACTTA 59.426 45.833 0.00 0.00 0.00 2.24
2074 2322 7.871973 CACCTAGTTAGCGAGAGTACTTAGATA 59.128 40.741 0.00 0.00 0.00 1.98
2099 2347 8.798859 AGAGAATTATTTGAAGTGCATGTACT 57.201 30.769 11.03 11.03 0.00 2.73
2174 2431 2.070783 GATTTGTGGGCAAAGCACATG 58.929 47.619 0.00 0.00 46.32 3.21
2251 2514 1.656441 CAGTGCTGTTGGCCAAGTC 59.344 57.895 21.21 9.02 40.92 3.01
2273 2536 4.792106 CGTACTTTACGTCCCGGG 57.208 61.111 16.85 16.85 46.41 5.73
2296 2560 3.454812 AGGACGGTGCACTAAATTATCCT 59.545 43.478 17.98 14.32 0.00 3.24
2413 2678 6.463360 TGTCACTAAAGAATGCAGTACATGA 58.537 36.000 0.00 0.00 39.60 3.07
2428 2697 6.556212 CAGTACATGACGTTCTCAAGATAGT 58.444 40.000 0.00 0.00 30.60 2.12
2438 2707 7.152645 ACGTTCTCAAGATAGTTAATGTGTGT 58.847 34.615 0.00 0.00 0.00 3.72
2441 2710 9.088512 GTTCTCAAGATAGTTAATGTGTGTAGG 57.911 37.037 0.00 0.00 0.00 3.18
2444 2713 9.653287 CTCAAGATAGTTAATGTGTGTAGGAAA 57.347 33.333 0.00 0.00 0.00 3.13
2445 2714 9.653287 TCAAGATAGTTAATGTGTGTAGGAAAG 57.347 33.333 0.00 0.00 0.00 2.62
2447 2716 8.147244 AGATAGTTAATGTGTGTAGGAAAGGT 57.853 34.615 0.00 0.00 0.00 3.50
2454 2773 4.994282 TGTGTGTAGGAAAGGTAGAGAGA 58.006 43.478 0.00 0.00 0.00 3.10
2463 2782 4.379708 GGAAAGGTAGAGAGAGTCGACAAC 60.380 50.000 19.50 11.35 32.61 3.32
2500 2820 7.768120 AGAAGAAGAGAAAATAGCATGGTAGTG 59.232 37.037 10.82 0.00 0.00 2.74
2503 2823 7.550906 AGAAGAGAAAATAGCATGGTAGTGTTC 59.449 37.037 10.82 12.30 0.00 3.18
2510 2830 8.409358 AAATAGCATGGTAGTGTTCTTTTTCT 57.591 30.769 10.82 0.00 0.00 2.52
2511 2831 5.948992 AGCATGGTAGTGTTCTTTTTCTC 57.051 39.130 0.00 0.00 0.00 2.87
2512 2832 5.376625 AGCATGGTAGTGTTCTTTTTCTCA 58.623 37.500 0.00 0.00 0.00 3.27
2513 2833 5.827797 AGCATGGTAGTGTTCTTTTTCTCAA 59.172 36.000 0.00 0.00 0.00 3.02
2514 2834 6.016777 AGCATGGTAGTGTTCTTTTTCTCAAG 60.017 38.462 0.00 0.00 0.00 3.02
2515 2835 6.017109 GCATGGTAGTGTTCTTTTTCTCAAGA 60.017 38.462 0.00 0.00 0.00 3.02
2516 2836 6.920569 TGGTAGTGTTCTTTTTCTCAAGAC 57.079 37.500 0.00 0.00 32.28 3.01
2517 2837 5.820947 TGGTAGTGTTCTTTTTCTCAAGACC 59.179 40.000 0.00 0.00 32.28 3.85
2518 2838 5.238868 GGTAGTGTTCTTTTTCTCAAGACCC 59.761 44.000 0.00 0.00 32.28 4.46
2519 2839 4.207955 AGTGTTCTTTTTCTCAAGACCCC 58.792 43.478 0.00 0.00 32.28 4.95
2520 2840 4.079730 AGTGTTCTTTTTCTCAAGACCCCT 60.080 41.667 0.00 0.00 32.28 4.79
2521 2841 4.645136 GTGTTCTTTTTCTCAAGACCCCTT 59.355 41.667 0.00 0.00 32.28 3.95
2522 2842 4.887655 TGTTCTTTTTCTCAAGACCCCTTC 59.112 41.667 0.00 0.00 32.28 3.46
2523 2843 4.100279 TCTTTTTCTCAAGACCCCTTCC 57.900 45.455 0.00 0.00 0.00 3.46
2524 2844 3.722101 TCTTTTTCTCAAGACCCCTTCCT 59.278 43.478 0.00 0.00 0.00 3.36
2525 2845 3.790089 TTTTCTCAAGACCCCTTCCTC 57.210 47.619 0.00 0.00 0.00 3.71
2526 2846 2.723530 TTCTCAAGACCCCTTCCTCT 57.276 50.000 0.00 0.00 0.00 3.69
2527 2847 2.239681 TCTCAAGACCCCTTCCTCTC 57.760 55.000 0.00 0.00 0.00 3.20
2528 2848 1.199615 CTCAAGACCCCTTCCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
2529 2849 0.793617 TCAAGACCCCTTCCTCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
2530 2850 0.908198 CAAGACCCCTTCCTCTCCTG 59.092 60.000 0.00 0.00 0.00 3.86
2531 2851 0.252927 AAGACCCCTTCCTCTCCTGG 60.253 60.000 0.00 0.00 0.00 4.45
2532 2852 1.081277 GACCCCTTCCTCTCCTGGT 59.919 63.158 0.00 0.00 0.00 4.00
2533 2853 0.547954 GACCCCTTCCTCTCCTGGTT 60.548 60.000 0.00 0.00 0.00 3.67
2534 2854 0.547954 ACCCCTTCCTCTCCTGGTTC 60.548 60.000 0.00 0.00 0.00 3.62
2535 2855 0.252927 CCCCTTCCTCTCCTGGTTCT 60.253 60.000 0.00 0.00 0.00 3.01
2536 2856 1.662686 CCCTTCCTCTCCTGGTTCTT 58.337 55.000 0.00 0.00 0.00 2.52
2537 2857 2.562214 CCCCTTCCTCTCCTGGTTCTTA 60.562 54.545 0.00 0.00 0.00 2.10
2538 2858 3.182152 CCCTTCCTCTCCTGGTTCTTAA 58.818 50.000 0.00 0.00 0.00 1.85
2539 2859 3.055021 CCCTTCCTCTCCTGGTTCTTAAC 60.055 52.174 0.00 0.00 0.00 2.01
2557 2877 9.788960 GTTCTTAACCATTAATTAGAAAGCAGG 57.211 33.333 0.00 0.00 0.00 4.85
2558 2878 7.996385 TCTTAACCATTAATTAGAAAGCAGGC 58.004 34.615 0.00 0.00 0.00 4.85
2559 2879 7.834181 TCTTAACCATTAATTAGAAAGCAGGCT 59.166 33.333 0.00 0.00 0.00 4.58
2560 2880 9.120538 CTTAACCATTAATTAGAAAGCAGGCTA 57.879 33.333 0.00 0.00 0.00 3.93
2561 2881 7.954666 AACCATTAATTAGAAAGCAGGCTAA 57.045 32.000 0.00 0.00 0.00 3.09
2562 2882 8.539117 AACCATTAATTAGAAAGCAGGCTAAT 57.461 30.769 0.00 0.00 38.57 1.73
2563 2883 7.945134 ACCATTAATTAGAAAGCAGGCTAATG 58.055 34.615 0.00 0.00 37.38 1.90
2564 2884 7.561356 ACCATTAATTAGAAAGCAGGCTAATGT 59.439 33.333 0.00 0.00 37.38 2.71
2565 2885 7.864379 CCATTAATTAGAAAGCAGGCTAATGTG 59.136 37.037 0.00 0.00 37.38 3.21
2566 2886 5.841957 AATTAGAAAGCAGGCTAATGTGG 57.158 39.130 0.00 0.00 37.38 4.17
2567 2887 2.887151 AGAAAGCAGGCTAATGTGGT 57.113 45.000 0.00 0.00 0.00 4.16
2568 2888 5.429681 TTAGAAAGCAGGCTAATGTGGTA 57.570 39.130 0.00 0.00 0.00 3.25
2569 2889 3.610911 AGAAAGCAGGCTAATGTGGTAC 58.389 45.455 0.00 0.00 0.00 3.34
2570 2890 3.264450 AGAAAGCAGGCTAATGTGGTACT 59.736 43.478 0.00 0.00 0.00 2.73
2571 2891 2.990066 AGCAGGCTAATGTGGTACTC 57.010 50.000 0.00 0.00 0.00 2.59
2572 2892 1.486726 AGCAGGCTAATGTGGTACTCC 59.513 52.381 0.00 0.00 0.00 3.85
2573 2893 1.209504 GCAGGCTAATGTGGTACTCCA 59.790 52.381 0.00 0.00 42.05 3.86
2574 2894 2.355716 GCAGGCTAATGTGGTACTCCAA 60.356 50.000 0.00 0.00 46.15 3.53
2575 2895 3.685550 GCAGGCTAATGTGGTACTCCAAT 60.686 47.826 0.00 0.00 46.15 3.16
2576 2896 4.444306 GCAGGCTAATGTGGTACTCCAATA 60.444 45.833 0.00 0.00 46.15 1.90
2577 2897 5.746065 GCAGGCTAATGTGGTACTCCAATAT 60.746 44.000 0.00 0.00 46.15 1.28
2578 2898 6.299141 CAGGCTAATGTGGTACTCCAATATT 58.701 40.000 0.00 0.00 46.15 1.28
2579 2899 6.428159 CAGGCTAATGTGGTACTCCAATATTC 59.572 42.308 0.00 0.00 46.15 1.75
2580 2900 6.101150 AGGCTAATGTGGTACTCCAATATTCA 59.899 38.462 0.00 0.00 46.15 2.57
2581 2901 6.428159 GGCTAATGTGGTACTCCAATATTCAG 59.572 42.308 0.00 0.00 46.15 3.02
2582 2902 6.073003 GCTAATGTGGTACTCCAATATTCAGC 60.073 42.308 0.00 0.00 46.15 4.26
2583 2903 4.835284 TGTGGTACTCCAATATTCAGCA 57.165 40.909 0.00 0.00 46.15 4.41
2584 2904 5.172687 TGTGGTACTCCAATATTCAGCAA 57.827 39.130 0.00 0.00 46.15 3.91
2585 2905 5.185454 TGTGGTACTCCAATATTCAGCAAG 58.815 41.667 0.00 0.00 46.15 4.01
2586 2906 5.045942 TGTGGTACTCCAATATTCAGCAAGA 60.046 40.000 0.00 0.00 46.15 3.02
2587 2907 5.880332 GTGGTACTCCAATATTCAGCAAGAA 59.120 40.000 0.00 0.00 46.15 2.52
2588 2908 6.374333 GTGGTACTCCAATATTCAGCAAGAAA 59.626 38.462 0.00 0.00 46.15 2.52
2589 2909 7.067494 GTGGTACTCCAATATTCAGCAAGAAAT 59.933 37.037 0.00 0.00 46.15 2.17
2590 2910 8.271458 TGGTACTCCAATATTCAGCAAGAAATA 58.729 33.333 0.00 0.00 41.25 1.40
2591 2911 9.120538 GGTACTCCAATATTCAGCAAGAAATAA 57.879 33.333 0.00 0.00 40.22 1.40
2592 2912 9.937175 GTACTCCAATATTCAGCAAGAAATAAC 57.063 33.333 0.00 0.00 40.22 1.89
2593 2913 8.579850 ACTCCAATATTCAGCAAGAAATAACA 57.420 30.769 0.00 0.00 40.22 2.41
2594 2914 9.193806 ACTCCAATATTCAGCAAGAAATAACAT 57.806 29.630 0.00 0.00 40.22 2.71
2603 2923 8.263940 TCAGCAAGAAATAACATACTACAACC 57.736 34.615 0.00 0.00 0.00 3.77
2604 2924 7.880713 TCAGCAAGAAATAACATACTACAACCA 59.119 33.333 0.00 0.00 0.00 3.67
2605 2925 8.677300 CAGCAAGAAATAACATACTACAACCAT 58.323 33.333 0.00 0.00 0.00 3.55
2606 2926 8.677300 AGCAAGAAATAACATACTACAACCATG 58.323 33.333 0.00 0.00 0.00 3.66
2607 2927 8.458843 GCAAGAAATAACATACTACAACCATGT 58.541 33.333 0.00 0.00 43.74 3.21
2610 2930 9.515226 AGAAATAACATACTACAACCATGTTGT 57.485 29.630 15.96 15.96 45.40 3.32
2620 2940 8.039603 ACTACAACCATGTTGTATATTGTGTG 57.960 34.615 17.36 8.16 42.45 3.82
2621 2941 6.892658 ACAACCATGTTGTATATTGTGTGT 57.107 33.333 10.66 0.00 35.91 3.72
2622 2942 6.676950 ACAACCATGTTGTATATTGTGTGTG 58.323 36.000 10.66 0.00 35.91 3.82
2623 2943 5.309323 ACCATGTTGTATATTGTGTGTGC 57.691 39.130 0.00 0.00 0.00 4.57
2624 2944 5.009631 ACCATGTTGTATATTGTGTGTGCT 58.990 37.500 0.00 0.00 0.00 4.40
2625 2945 5.106197 ACCATGTTGTATATTGTGTGTGCTG 60.106 40.000 0.00 0.00 0.00 4.41
2626 2946 5.106197 CCATGTTGTATATTGTGTGTGCTGT 60.106 40.000 0.00 0.00 0.00 4.40
2627 2947 5.355467 TGTTGTATATTGTGTGTGCTGTG 57.645 39.130 0.00 0.00 0.00 3.66
2628 2948 4.158384 GTTGTATATTGTGTGTGCTGTGC 58.842 43.478 0.00 0.00 0.00 4.57
2629 2949 3.673902 TGTATATTGTGTGTGCTGTGCT 58.326 40.909 0.00 0.00 0.00 4.40
2630 2950 3.684305 TGTATATTGTGTGTGCTGTGCTC 59.316 43.478 0.00 0.00 0.00 4.26
2631 2951 2.549064 TATTGTGTGTGCTGTGCTCT 57.451 45.000 0.00 0.00 0.00 4.09
2632 2952 1.233019 ATTGTGTGTGCTGTGCTCTC 58.767 50.000 0.00 0.00 0.00 3.20
2633 2953 0.178767 TTGTGTGTGCTGTGCTCTCT 59.821 50.000 0.00 0.00 0.00 3.10
2634 2954 0.531311 TGTGTGTGCTGTGCTCTCTG 60.531 55.000 0.00 0.00 0.00 3.35
2635 2955 1.070275 TGTGTGCTGTGCTCTCTGG 59.930 57.895 0.00 0.00 0.00 3.86
2636 2956 1.070445 GTGTGCTGTGCTCTCTGGT 59.930 57.895 0.00 0.00 0.00 4.00
2637 2957 0.318441 GTGTGCTGTGCTCTCTGGTA 59.682 55.000 0.00 0.00 0.00 3.25
2638 2958 1.066573 GTGTGCTGTGCTCTCTGGTAT 60.067 52.381 0.00 0.00 0.00 2.73
2639 2959 2.166459 GTGTGCTGTGCTCTCTGGTATA 59.834 50.000 0.00 0.00 0.00 1.47
2640 2960 3.033909 TGTGCTGTGCTCTCTGGTATAT 58.966 45.455 0.00 0.00 0.00 0.86
2641 2961 3.452264 TGTGCTGTGCTCTCTGGTATATT 59.548 43.478 0.00 0.00 0.00 1.28
2642 2962 4.080919 TGTGCTGTGCTCTCTGGTATATTT 60.081 41.667 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.829507 AAATTGTAGACAAATGAAATGGAAACA 57.170 25.926 0.00 0.00 41.88 2.83
29 30 9.230122 TGTGATGTCAAGCTTTATAAATGAAGA 57.770 29.630 0.00 0.00 0.00 2.87
30 31 9.844790 TTGTGATGTCAAGCTTTATAAATGAAG 57.155 29.630 0.00 0.00 0.00 3.02
31 32 9.844790 CTTGTGATGTCAAGCTTTATAAATGAA 57.155 29.630 0.00 0.00 38.35 2.57
32 33 8.461222 CCTTGTGATGTCAAGCTTTATAAATGA 58.539 33.333 0.00 0.00 42.16 2.57
33 34 8.246180 ACCTTGTGATGTCAAGCTTTATAAATG 58.754 33.333 0.00 0.00 42.16 2.32
34 35 8.353423 ACCTTGTGATGTCAAGCTTTATAAAT 57.647 30.769 0.00 0.00 42.16 1.40
35 36 7.759489 ACCTTGTGATGTCAAGCTTTATAAA 57.241 32.000 0.00 0.00 42.16 1.40
36 37 7.759489 AACCTTGTGATGTCAAGCTTTATAA 57.241 32.000 0.00 0.00 42.16 0.98
37 38 7.230510 ACAAACCTTGTGATGTCAAGCTTTATA 59.769 33.333 0.00 0.00 43.48 0.98
38 39 6.040842 ACAAACCTTGTGATGTCAAGCTTTAT 59.959 34.615 0.00 0.00 43.48 1.40
39 40 5.359576 ACAAACCTTGTGATGTCAAGCTTTA 59.640 36.000 0.00 0.00 43.48 1.85
40 41 4.160252 ACAAACCTTGTGATGTCAAGCTTT 59.840 37.500 0.00 0.00 43.48 3.51
41 42 3.701040 ACAAACCTTGTGATGTCAAGCTT 59.299 39.130 0.00 0.00 43.48 3.74
42 43 3.290710 ACAAACCTTGTGATGTCAAGCT 58.709 40.909 0.00 0.00 43.48 3.74
43 44 3.715628 ACAAACCTTGTGATGTCAAGC 57.284 42.857 0.00 0.00 43.48 4.01
44 45 5.707298 AGGATACAAACCTTGTGATGTCAAG 59.293 40.000 2.30 0.00 45.03 3.02
45 46 5.473162 CAGGATACAAACCTTGTGATGTCAA 59.527 40.000 2.30 0.00 45.03 3.18
46 47 5.003160 CAGGATACAAACCTTGTGATGTCA 58.997 41.667 2.30 0.00 45.03 3.58
47 48 5.245531 TCAGGATACAAACCTTGTGATGTC 58.754 41.667 2.30 0.00 45.03 3.06
48 49 5.241403 TCAGGATACAAACCTTGTGATGT 57.759 39.130 2.30 0.00 45.03 3.06
49 50 7.011763 CAGTATCAGGATACAAACCTTGTGATG 59.988 40.741 18.71 3.37 45.03 3.07
50 51 7.050377 CAGTATCAGGATACAAACCTTGTGAT 58.950 38.462 18.71 0.00 45.03 3.06
51 52 6.406370 CAGTATCAGGATACAAACCTTGTGA 58.594 40.000 18.71 0.00 45.03 3.58
52 53 5.065218 GCAGTATCAGGATACAAACCTTGTG 59.935 44.000 18.71 8.69 45.03 3.33
53 54 5.186198 GCAGTATCAGGATACAAACCTTGT 58.814 41.667 18.71 0.00 44.58 3.16
54 55 4.576463 GGCAGTATCAGGATACAAACCTTG 59.424 45.833 18.71 9.83 44.58 3.61
55 56 4.227300 TGGCAGTATCAGGATACAAACCTT 59.773 41.667 18.71 0.00 44.58 3.50
56 57 3.780294 TGGCAGTATCAGGATACAAACCT 59.220 43.478 18.71 0.00 44.58 3.50
57 58 3.877508 GTGGCAGTATCAGGATACAAACC 59.122 47.826 18.71 16.01 44.58 3.27
58 59 3.555956 CGTGGCAGTATCAGGATACAAAC 59.444 47.826 18.71 10.95 44.58 2.93
59 60 3.196901 ACGTGGCAGTATCAGGATACAAA 59.803 43.478 18.71 2.06 44.58 2.83
60 61 2.764010 ACGTGGCAGTATCAGGATACAA 59.236 45.455 18.71 2.35 44.58 2.41
61 62 2.100749 CACGTGGCAGTATCAGGATACA 59.899 50.000 18.71 0.00 44.58 2.29
62 63 2.743938 CACGTGGCAGTATCAGGATAC 58.256 52.381 7.95 10.72 42.96 2.24
63 64 1.068588 GCACGTGGCAGTATCAGGATA 59.931 52.381 18.88 0.00 43.97 2.59
64 65 0.179073 GCACGTGGCAGTATCAGGAT 60.179 55.000 18.88 0.00 43.97 3.24
65 66 1.218047 GCACGTGGCAGTATCAGGA 59.782 57.895 18.88 0.00 43.97 3.86
66 67 2.167219 CGCACGTGGCAGTATCAGG 61.167 63.158 18.88 0.00 45.17 3.86
67 68 1.446099 ACGCACGTGGCAGTATCAG 60.446 57.895 18.88 0.00 45.17 2.90
68 69 1.736282 CACGCACGTGGCAGTATCA 60.736 57.895 18.88 0.00 45.17 2.15
69 70 3.081133 CACGCACGTGGCAGTATC 58.919 61.111 18.88 0.00 45.17 2.24
78 79 1.004292 GTTAAAAGCTCACACGCACGT 60.004 47.619 0.00 0.00 0.00 4.49
79 80 1.658968 GTTAAAAGCTCACACGCACG 58.341 50.000 0.00 0.00 0.00 5.34
80 81 1.658968 CGTTAAAAGCTCACACGCAC 58.341 50.000 0.00 0.00 0.00 5.34
81 82 0.584396 CCGTTAAAAGCTCACACGCA 59.416 50.000 0.00 0.00 0.00 5.24
82 83 0.584876 ACCGTTAAAAGCTCACACGC 59.415 50.000 0.00 0.00 0.00 5.34
83 84 1.862201 TGACCGTTAAAAGCTCACACG 59.138 47.619 0.00 0.00 0.00 4.49
84 85 3.064271 TGTTGACCGTTAAAAGCTCACAC 59.936 43.478 0.00 0.00 0.00 3.82
85 86 3.271729 TGTTGACCGTTAAAAGCTCACA 58.728 40.909 0.00 0.00 0.00 3.58
86 87 3.955771 TGTTGACCGTTAAAAGCTCAC 57.044 42.857 0.00 0.00 0.00 3.51
87 88 3.304391 GCATGTTGACCGTTAAAAGCTCA 60.304 43.478 0.00 0.00 0.00 4.26
88 89 3.234386 GCATGTTGACCGTTAAAAGCTC 58.766 45.455 0.00 0.00 0.00 4.09
89 90 2.030274 GGCATGTTGACCGTTAAAAGCT 60.030 45.455 0.00 0.00 0.00 3.74
90 91 2.287909 TGGCATGTTGACCGTTAAAAGC 60.288 45.455 0.00 0.00 0.00 3.51
91 92 3.305110 GTGGCATGTTGACCGTTAAAAG 58.695 45.455 0.00 0.00 0.00 2.27
92 93 2.287069 CGTGGCATGTTGACCGTTAAAA 60.287 45.455 0.00 0.00 0.00 1.52
93 94 1.264557 CGTGGCATGTTGACCGTTAAA 59.735 47.619 0.00 0.00 0.00 1.52
94 95 0.869068 CGTGGCATGTTGACCGTTAA 59.131 50.000 0.00 0.00 0.00 2.01
95 96 0.249953 ACGTGGCATGTTGACCGTTA 60.250 50.000 6.51 0.00 30.18 3.18
96 97 1.525077 ACGTGGCATGTTGACCGTT 60.525 52.632 6.51 0.00 30.18 4.44
97 98 2.110213 ACGTGGCATGTTGACCGT 59.890 55.556 6.51 0.00 29.67 4.83
98 99 2.555782 CACGTGGCATGTTGACCG 59.444 61.111 10.21 0.00 0.00 4.79
99 100 2.953821 CCACGTGGCATGTTGACC 59.046 61.111 24.02 0.00 0.00 4.02
125 126 2.969821 TTGTGACATATATGGCCCCC 57.030 50.000 16.15 4.74 33.92 5.40
126 127 3.009723 CGATTGTGACATATATGGCCCC 58.990 50.000 16.15 7.20 33.92 5.80
127 128 3.674997 ACGATTGTGACATATATGGCCC 58.325 45.455 16.15 4.98 33.92 5.80
128 129 4.997395 AGAACGATTGTGACATATATGGCC 59.003 41.667 16.15 7.96 33.92 5.36
129 130 6.545504 AAGAACGATTGTGACATATATGGC 57.454 37.500 16.96 14.64 35.98 4.40
135 136 8.175069 GCTCAAATTAAGAACGATTGTGACATA 58.825 33.333 0.00 0.00 0.00 2.29
136 137 7.023575 GCTCAAATTAAGAACGATTGTGACAT 58.976 34.615 0.00 0.00 0.00 3.06
137 138 6.017523 TGCTCAAATTAAGAACGATTGTGACA 60.018 34.615 0.00 0.00 0.00 3.58
138 139 6.303259 GTGCTCAAATTAAGAACGATTGTGAC 59.697 38.462 0.00 0.00 0.00 3.67
139 140 6.017523 TGTGCTCAAATTAAGAACGATTGTGA 60.018 34.615 0.00 0.00 0.00 3.58
140 141 6.142139 TGTGCTCAAATTAAGAACGATTGTG 58.858 36.000 0.00 0.00 0.00 3.33
141 142 6.312399 TGTGCTCAAATTAAGAACGATTGT 57.688 33.333 0.00 0.00 0.00 2.71
142 143 7.253092 CGATTGTGCTCAAATTAAGAACGATTG 60.253 37.037 5.15 3.73 37.11 2.67
143 144 6.742718 CGATTGTGCTCAAATTAAGAACGATT 59.257 34.615 5.15 0.00 37.11 3.34
144 145 6.092122 TCGATTGTGCTCAAATTAAGAACGAT 59.908 34.615 5.15 2.51 37.11 3.73
145 146 5.407084 TCGATTGTGCTCAAATTAAGAACGA 59.593 36.000 5.15 4.84 37.11 3.85
146 147 5.617609 TCGATTGTGCTCAAATTAAGAACG 58.382 37.500 5.15 2.89 37.11 3.95
147 148 7.243487 TGATCGATTGTGCTCAAATTAAGAAC 58.757 34.615 5.15 1.64 37.11 3.01
148 149 7.376435 TGATCGATTGTGCTCAAATTAAGAA 57.624 32.000 5.15 0.00 37.11 2.52
149 150 6.983474 TGATCGATTGTGCTCAAATTAAGA 57.017 33.333 5.15 2.03 37.11 2.10
150 151 9.720667 TTAATGATCGATTGTGCTCAAATTAAG 57.279 29.630 5.15 0.00 37.11 1.85
152 153 9.502145 GTTTAATGATCGATTGTGCTCAAATTA 57.498 29.630 5.15 1.78 37.11 1.40
153 154 8.028354 TGTTTAATGATCGATTGTGCTCAAATT 58.972 29.630 5.15 2.69 37.11 1.82
154 155 7.537715 TGTTTAATGATCGATTGTGCTCAAAT 58.462 30.769 5.15 0.00 37.11 2.32
155 156 6.907741 TGTTTAATGATCGATTGTGCTCAAA 58.092 32.000 5.15 0.00 37.11 2.69
156 157 6.403527 CCTGTTTAATGATCGATTGTGCTCAA 60.404 38.462 0.00 3.31 37.98 3.02
157 158 5.065090 CCTGTTTAATGATCGATTGTGCTCA 59.935 40.000 0.00 0.00 0.00 4.26
158 159 5.294306 TCCTGTTTAATGATCGATTGTGCTC 59.706 40.000 0.00 0.00 0.00 4.26
159 160 5.185454 TCCTGTTTAATGATCGATTGTGCT 58.815 37.500 0.00 0.00 0.00 4.40
160 161 5.065218 ACTCCTGTTTAATGATCGATTGTGC 59.935 40.000 0.00 0.00 0.00 4.57
161 162 6.313658 TCACTCCTGTTTAATGATCGATTGTG 59.686 38.462 0.00 0.00 0.00 3.33
162 163 6.406370 TCACTCCTGTTTAATGATCGATTGT 58.594 36.000 0.00 0.00 0.00 2.71
163 164 6.908870 TCACTCCTGTTTAATGATCGATTG 57.091 37.500 0.00 0.00 0.00 2.67
164 165 7.050377 ACATCACTCCTGTTTAATGATCGATT 58.950 34.615 0.00 0.00 0.00 3.34
165 166 6.586344 ACATCACTCCTGTTTAATGATCGAT 58.414 36.000 0.00 0.00 0.00 3.59
166 167 5.977635 ACATCACTCCTGTTTAATGATCGA 58.022 37.500 0.00 0.00 0.00 3.59
167 168 6.668541 AACATCACTCCTGTTTAATGATCG 57.331 37.500 0.00 0.00 33.10 3.69
190 191 8.825745 CCACTTTAGCTCTAATTTTTGCAAAAA 58.174 29.630 32.91 32.91 41.59 1.94
191 192 7.984617 ACCACTTTAGCTCTAATTTTTGCAAAA 59.015 29.630 20.46 20.46 0.00 2.44
192 193 7.437862 CACCACTTTAGCTCTAATTTTTGCAAA 59.562 33.333 8.05 8.05 0.00 3.68
193 194 6.922957 CACCACTTTAGCTCTAATTTTTGCAA 59.077 34.615 0.00 0.00 0.00 4.08
194 195 6.040391 ACACCACTTTAGCTCTAATTTTTGCA 59.960 34.615 0.00 0.00 0.00 4.08
195 196 6.447162 ACACCACTTTAGCTCTAATTTTTGC 58.553 36.000 0.00 0.00 0.00 3.68
196 197 8.871686 AAACACCACTTTAGCTCTAATTTTTG 57.128 30.769 0.00 0.00 0.00 2.44
197 198 9.529325 GAAAACACCACTTTAGCTCTAATTTTT 57.471 29.630 0.00 0.00 0.00 1.94
198 199 8.914011 AGAAAACACCACTTTAGCTCTAATTTT 58.086 29.630 0.00 0.00 0.00 1.82
199 200 8.352942 CAGAAAACACCACTTTAGCTCTAATTT 58.647 33.333 0.00 0.00 0.00 1.82
200 201 7.502561 ACAGAAAACACCACTTTAGCTCTAATT 59.497 33.333 0.00 0.00 0.00 1.40
201 202 6.998673 ACAGAAAACACCACTTTAGCTCTAAT 59.001 34.615 0.00 0.00 0.00 1.73
202 203 6.354130 ACAGAAAACACCACTTTAGCTCTAA 58.646 36.000 0.00 0.00 0.00 2.10
203 204 5.925509 ACAGAAAACACCACTTTAGCTCTA 58.074 37.500 0.00 0.00 0.00 2.43
204 205 4.781934 ACAGAAAACACCACTTTAGCTCT 58.218 39.130 0.00 0.00 0.00 4.09
205 206 4.574828 TGACAGAAAACACCACTTTAGCTC 59.425 41.667 0.00 0.00 0.00 4.09
206 207 4.523083 TGACAGAAAACACCACTTTAGCT 58.477 39.130 0.00 0.00 0.00 3.32
207 208 4.893424 TGACAGAAAACACCACTTTAGC 57.107 40.909 0.00 0.00 0.00 3.09
208 209 6.852664 ACTTTGACAGAAAACACCACTTTAG 58.147 36.000 0.00 0.00 0.00 1.85
209 210 6.827586 ACTTTGACAGAAAACACCACTTTA 57.172 33.333 0.00 0.00 0.00 1.85
210 211 5.722021 ACTTTGACAGAAAACACCACTTT 57.278 34.783 0.00 0.00 0.00 2.66
211 212 5.722021 AACTTTGACAGAAAACACCACTT 57.278 34.783 0.00 0.00 0.00 3.16
212 213 5.010617 ACAAACTTTGACAGAAAACACCACT 59.989 36.000 8.55 0.00 0.00 4.00
213 214 5.227152 ACAAACTTTGACAGAAAACACCAC 58.773 37.500 8.55 0.00 0.00 4.16
214 215 5.461032 ACAAACTTTGACAGAAAACACCA 57.539 34.783 8.55 0.00 0.00 4.17
215 216 7.597369 ACTTTACAAACTTTGACAGAAAACACC 59.403 33.333 8.55 0.00 0.00 4.16
216 217 8.424731 CACTTTACAAACTTTGACAGAAAACAC 58.575 33.333 8.55 0.00 0.00 3.32
217 218 7.596995 CCACTTTACAAACTTTGACAGAAAACA 59.403 33.333 8.55 0.00 0.00 2.83
218 219 7.597369 ACCACTTTACAAACTTTGACAGAAAAC 59.403 33.333 8.55 0.00 0.00 2.43
219 220 7.662897 ACCACTTTACAAACTTTGACAGAAAA 58.337 30.769 8.55 1.23 0.00 2.29
220 221 7.222000 ACCACTTTACAAACTTTGACAGAAA 57.778 32.000 8.55 3.05 0.00 2.52
221 222 6.827586 ACCACTTTACAAACTTTGACAGAA 57.172 33.333 8.55 0.00 0.00 3.02
222 223 7.107542 ACTACCACTTTACAAACTTTGACAGA 58.892 34.615 8.55 0.00 0.00 3.41
223 224 7.316544 ACTACCACTTTACAAACTTTGACAG 57.683 36.000 8.55 3.78 0.00 3.51
224 225 7.690952 AACTACCACTTTACAAACTTTGACA 57.309 32.000 8.55 0.00 0.00 3.58
225 226 8.975410 AAAACTACCACTTTACAAACTTTGAC 57.025 30.769 8.55 0.00 0.00 3.18
226 227 9.413048 CAAAAACTACCACTTTACAAACTTTGA 57.587 29.630 8.55 0.00 0.00 2.69
227 228 9.198837 ACAAAAACTACCACTTTACAAACTTTG 57.801 29.630 0.00 0.00 0.00 2.77
228 229 9.767228 AACAAAAACTACCACTTTACAAACTTT 57.233 25.926 0.00 0.00 0.00 2.66
229 230 9.198837 CAACAAAAACTACCACTTTACAAACTT 57.801 29.630 0.00 0.00 0.00 2.66
230 231 7.815549 CCAACAAAAACTACCACTTTACAAACT 59.184 33.333 0.00 0.00 0.00 2.66
231 232 7.599621 ACCAACAAAAACTACCACTTTACAAAC 59.400 33.333 0.00 0.00 0.00 2.93
232 233 7.668492 ACCAACAAAAACTACCACTTTACAAA 58.332 30.769 0.00 0.00 0.00 2.83
233 234 7.229581 ACCAACAAAAACTACCACTTTACAA 57.770 32.000 0.00 0.00 0.00 2.41
234 235 6.403418 CGACCAACAAAAACTACCACTTTACA 60.403 38.462 0.00 0.00 0.00 2.41
235 236 5.967088 CGACCAACAAAAACTACCACTTTAC 59.033 40.000 0.00 0.00 0.00 2.01
236 237 5.879223 TCGACCAACAAAAACTACCACTTTA 59.121 36.000 0.00 0.00 0.00 1.85
237 238 4.701171 TCGACCAACAAAAACTACCACTTT 59.299 37.500 0.00 0.00 0.00 2.66
238 239 4.263435 TCGACCAACAAAAACTACCACTT 58.737 39.130 0.00 0.00 0.00 3.16
239 240 3.876341 TCGACCAACAAAAACTACCACT 58.124 40.909 0.00 0.00 0.00 4.00
240 241 4.619437 TTCGACCAACAAAAACTACCAC 57.381 40.909 0.00 0.00 0.00 4.16
241 242 5.838531 AATTCGACCAACAAAAACTACCA 57.161 34.783 0.00 0.00 0.00 3.25
242 243 6.020201 CACAAATTCGACCAACAAAAACTACC 60.020 38.462 0.00 0.00 0.00 3.18
243 244 6.020201 CCACAAATTCGACCAACAAAAACTAC 60.020 38.462 0.00 0.00 0.00 2.73
287 292 1.112113 TTGATCTGGACCTAGCGGAC 58.888 55.000 0.00 0.00 0.00 4.79
304 309 0.393673 TGGACAGTGGTGGTGTGTTG 60.394 55.000 0.00 0.00 0.00 3.33
305 310 0.393808 GTGGACAGTGGTGGTGTGTT 60.394 55.000 0.00 0.00 0.00 3.32
313 318 2.147387 GGGTGGAGTGGACAGTGGT 61.147 63.158 0.00 0.00 0.00 4.16
319 324 1.375326 GAGTTGGGGTGGAGTGGAC 59.625 63.158 0.00 0.00 0.00 4.02
410 431 1.071605 CCGTTCTGAAGAAAGCGAGG 58.928 55.000 5.04 0.00 35.58 4.63
602 633 4.862902 AACTAGATGATGGTCCTGATCG 57.137 45.455 0.00 0.00 0.00 3.69
607 638 9.213777 TGTCTTAATTAACTAGATGATGGTCCT 57.786 33.333 0.00 0.00 0.00 3.85
611 674 8.768955 GCAGTGTCTTAATTAACTAGATGATGG 58.231 37.037 0.00 0.00 0.00 3.51
617 680 5.657474 CCGGCAGTGTCTTAATTAACTAGA 58.343 41.667 0.00 0.00 0.00 2.43
621 684 2.096980 GGCCGGCAGTGTCTTAATTAAC 59.903 50.000 30.85 0.00 0.00 2.01
678 741 7.148289 GCCTTACTTAATGGACTTCTTTACCAC 60.148 40.741 0.00 0.00 36.49 4.16
682 745 7.773690 GGATGCCTTACTTAATGGACTTCTTTA 59.226 37.037 0.00 0.00 0.00 1.85
781 845 4.251543 ACCATTTTAAAACTGCTTCCGG 57.748 40.909 1.97 0.00 0.00 5.14
783 847 6.540551 TCCAAAACCATTTTAAAACTGCTTCC 59.459 34.615 1.97 0.00 0.00 3.46
814 879 9.905713 ATCTATCTACAGGACTTTGCAAAATTA 57.094 29.630 13.84 0.00 0.00 1.40
825 890 6.103501 AGAGTGGGTAATCTATCTACAGGACT 59.896 42.308 0.00 0.00 27.72 3.85
841 906 0.040058 TTCCGGCAGTAGAGTGGGTA 59.960 55.000 0.00 0.00 0.00 3.69
869 934 2.639286 CAGTGTTTGCCGCACTCC 59.361 61.111 0.00 0.00 44.43 3.85
876 941 2.983592 CCCGTCCCAGTGTTTGCC 60.984 66.667 0.00 0.00 0.00 4.52
930 1000 3.010420 GTGGTTTGAAGCCCTAGACATC 58.990 50.000 0.00 0.00 0.00 3.06
931 1001 2.644798 AGTGGTTTGAAGCCCTAGACAT 59.355 45.455 0.00 0.00 0.00 3.06
939 1009 1.172812 AGGCGAAGTGGTTTGAAGCC 61.173 55.000 0.00 0.00 43.07 4.35
1048 1121 4.080356 CCCATCCTGTCTGAGATTTGGTTA 60.080 45.833 0.00 0.00 0.00 2.85
1051 1124 2.422519 CCCCATCCTGTCTGAGATTTGG 60.423 54.545 0.00 0.00 0.00 3.28
1059 1132 1.694133 GGAGCTCCCCATCCTGTCTG 61.694 65.000 23.19 0.00 32.51 3.51
1096 1169 4.827087 AGCAGGATCACAGCCGCG 62.827 66.667 0.00 0.00 32.71 6.46
1099 1172 0.747283 CCAGAAGCAGGATCACAGCC 60.747 60.000 0.00 0.00 0.00 4.85
1187 1260 0.109319 GTGGCCATTTGGTTACTGCG 60.109 55.000 9.72 0.00 37.57 5.18
1226 1302 5.756195 TTCAGACAACAGGTGATGAAAAG 57.244 39.130 7.99 0.00 35.20 2.27
1254 1331 8.565896 TGTTAGCATCTGAACATATCAAGTTT 57.434 30.769 0.00 0.00 37.67 2.66
1258 1335 6.037500 GCACTGTTAGCATCTGAACATATCAA 59.962 38.462 0.00 0.00 37.67 2.57
1259 1336 5.525012 GCACTGTTAGCATCTGAACATATCA 59.475 40.000 0.00 0.00 35.13 2.15
1261 1338 5.678583 AGCACTGTTAGCATCTGAACATAT 58.321 37.500 0.00 0.00 35.13 1.78
1263 1340 3.947868 AGCACTGTTAGCATCTGAACAT 58.052 40.909 0.00 0.00 35.13 2.71
1265 1342 3.499918 ACAAGCACTGTTAGCATCTGAAC 59.500 43.478 0.00 0.00 32.99 3.18
1279 1356 4.567959 GCATTTTTCAAGAACACAAGCACT 59.432 37.500 0.00 0.00 0.00 4.40
1310 1387 3.181520 CGACGACATTGTTCTTCCCAATC 60.182 47.826 0.00 0.00 30.28 2.67
1312 1389 2.139917 CGACGACATTGTTCTTCCCAA 58.860 47.619 0.00 0.00 0.00 4.12
1319 1396 2.066262 ACCACATCGACGACATTGTTC 58.934 47.619 0.00 0.00 0.00 3.18
1320 1397 2.066262 GACCACATCGACGACATTGTT 58.934 47.619 0.00 0.00 0.00 2.83
1321 1398 1.000394 TGACCACATCGACGACATTGT 60.000 47.619 0.00 0.00 0.00 2.71
1345 1422 1.135859 CGCTTGTCAAACCAGCAGATC 60.136 52.381 4.35 0.00 0.00 2.75
1346 1423 0.877071 CGCTTGTCAAACCAGCAGAT 59.123 50.000 4.35 0.00 0.00 2.90
1355 1432 4.631131 TCTTCTTCATCTCGCTTGTCAAA 58.369 39.130 0.00 0.00 0.00 2.69
1357 1434 3.842820 CTCTTCTTCATCTCGCTTGTCA 58.157 45.455 0.00 0.00 0.00 3.58
1369 1446 0.387929 AACGTCCACGCTCTTCTTCA 59.612 50.000 0.00 0.00 44.43 3.02
1392 1469 1.810030 CCGCCCTAACTTCACTCGC 60.810 63.158 0.00 0.00 0.00 5.03
1395 1472 1.677552 CCACCGCCCTAACTTCACT 59.322 57.895 0.00 0.00 0.00 3.41
1570 1651 0.246635 AATAGCCTATACAGCCGCCG 59.753 55.000 0.00 0.00 0.00 6.46
1572 1653 2.743636 TGAATAGCCTATACAGCCGC 57.256 50.000 0.00 0.00 0.00 6.53
1579 1660 7.099764 GCTTGAGCTTACATGAATAGCCTATA 58.900 38.462 0.00 0.00 38.21 1.31
1580 1661 5.936956 GCTTGAGCTTACATGAATAGCCTAT 59.063 40.000 0.00 0.00 38.21 2.57
1611 1692 3.934579 CGCTATCTATTGCCATGCATGTA 59.065 43.478 24.58 11.07 38.76 2.29
1635 1716 2.419673 TGCCAAGAATGTTAGCACATCG 59.580 45.455 0.00 0.00 43.34 3.84
1804 1891 4.438336 CCTGATGTTGATGTGAGATGTTGC 60.438 45.833 0.00 0.00 0.00 4.17
1830 1917 4.436242 AGGCGTAATATCGTGATAGTGG 57.564 45.455 0.40 0.00 0.00 4.00
1893 1980 0.912486 ATAGGCCTTTCGCACTTCCT 59.088 50.000 12.58 0.00 40.31 3.36
1907 1994 3.447586 TCGATGCACTTCCCTATATAGGC 59.552 47.826 21.75 10.66 42.26 3.93
1909 1996 5.506483 CCGATCGATGCACTTCCCTATATAG 60.506 48.000 18.66 2.46 0.00 1.31
1910 1997 4.338400 CCGATCGATGCACTTCCCTATATA 59.662 45.833 18.66 0.00 0.00 0.86
1911 1998 3.131223 CCGATCGATGCACTTCCCTATAT 59.869 47.826 18.66 0.00 0.00 0.86
1913 2000 1.273606 CCGATCGATGCACTTCCCTAT 59.726 52.381 18.66 0.00 0.00 2.57
1916 2003 1.144057 ACCGATCGATGCACTTCCC 59.856 57.895 18.66 0.00 0.00 3.97
1917 2004 1.766143 GCACCGATCGATGCACTTCC 61.766 60.000 29.39 0.00 41.65 3.46
1918 2005 1.083806 TGCACCGATCGATGCACTTC 61.084 55.000 32.84 4.97 46.63 3.01
1920 2007 1.520120 CTGCACCGATCGATGCACT 60.520 57.895 32.84 0.00 46.63 4.40
1921 2008 1.485838 CTCTGCACCGATCGATGCAC 61.486 60.000 32.84 6.60 46.63 4.57
1926 2066 3.838271 GGCCTCTGCACCGATCGA 61.838 66.667 18.66 0.00 40.13 3.59
1928 2068 2.202987 CTGGCCTCTGCACCGATC 60.203 66.667 3.32 0.00 40.13 3.69
1977 2119 9.872757 CAACTACATTGTTTGTTCGTAGTTATT 57.127 29.630 11.64 0.00 46.38 1.40
1979 2121 7.011202 TGCAACTACATTGTTTGTTCGTAGTTA 59.989 33.333 11.64 0.00 46.38 2.24
1982 2124 5.743467 TGCAACTACATTGTTTGTTCGTAG 58.257 37.500 0.00 0.00 40.77 3.51
1986 2213 6.265577 AGTCTTGCAACTACATTGTTTGTTC 58.734 36.000 0.00 0.00 40.77 3.18
2020 2247 3.038710 GTCTTGCAACTTCGCTTCAAAG 58.961 45.455 0.00 0.00 0.00 2.77
2030 2257 0.183492 TGCCAGGAGTCTTGCAACTT 59.817 50.000 0.00 0.00 38.49 2.66
2037 2264 2.031495 AACTAGGTGCCAGGAGTCTT 57.969 50.000 0.00 0.00 0.00 3.01
2047 2274 2.944349 AGTACTCTCGCTAACTAGGTGC 59.056 50.000 0.00 0.00 0.00 5.01
2048 2275 6.047870 TCTAAGTACTCTCGCTAACTAGGTG 58.952 44.000 0.00 0.00 0.00 4.00
2049 2276 6.232581 TCTAAGTACTCTCGCTAACTAGGT 57.767 41.667 0.00 0.00 0.00 3.08
2050 2277 8.306038 TCTATCTAAGTACTCTCGCTAACTAGG 58.694 40.741 0.00 0.00 0.00 3.02
2053 2280 7.954835 TCTCTATCTAAGTACTCTCGCTAACT 58.045 38.462 0.00 0.00 0.00 2.24
2054 2281 8.592105 TTCTCTATCTAAGTACTCTCGCTAAC 57.408 38.462 0.00 0.00 0.00 2.34
2055 2282 9.781633 AATTCTCTATCTAAGTACTCTCGCTAA 57.218 33.333 0.00 0.00 0.00 3.09
2070 2297 9.624373 ACATGCACTTCAAATAATTCTCTATCT 57.376 29.630 0.00 0.00 0.00 1.98
2074 2322 8.798859 AGTACATGCACTTCAAATAATTCTCT 57.201 30.769 0.00 0.00 0.00 3.10
2086 2334 3.849911 TGCTCACTAGTACATGCACTTC 58.150 45.455 3.37 0.00 0.00 3.01
2087 2335 3.961480 TGCTCACTAGTACATGCACTT 57.039 42.857 3.37 0.00 0.00 3.16
2128 2376 2.303600 ACCGGCAGTTTAATCACTGGTA 59.696 45.455 0.00 0.00 43.94 3.25
2137 2385 2.279935 ATCAACCACCGGCAGTTTAA 57.720 45.000 0.00 0.00 0.00 1.52
2174 2431 1.889573 GCATGGGCTCCGAACTAGC 60.890 63.158 0.00 0.00 39.33 3.42
2217 2474 0.816825 ACTGCAGCATATCCGGCAAG 60.817 55.000 15.27 0.00 35.59 4.01
2270 2533 2.162338 TTTAGTGCACCGTCCTCCCG 62.162 60.000 14.63 0.00 0.00 5.14
2273 2536 3.808174 GGATAATTTAGTGCACCGTCCTC 59.192 47.826 14.63 2.18 0.00 3.71
2296 2560 7.329226 GTGAAATAGTGGTTGTACGTAGCTTTA 59.671 37.037 0.00 0.00 0.00 1.85
2360 2624 2.601664 TTGCCTTGCAAAAGGTGGT 58.398 47.368 6.32 0.00 45.96 4.16
2413 2678 7.152645 ACACACATTAACTATCTTGAGAACGT 58.847 34.615 0.00 0.00 0.00 3.99
2428 2697 7.672660 TCTCTCTACCTTTCCTACACACATTAA 59.327 37.037 0.00 0.00 0.00 1.40
2438 2707 4.224594 TGTCGACTCTCTCTACCTTTCCTA 59.775 45.833 17.92 0.00 0.00 2.94
2441 2710 4.215827 TGTTGTCGACTCTCTCTACCTTTC 59.784 45.833 17.92 0.00 0.00 2.62
2444 2713 3.420300 TGTTGTCGACTCTCTCTACCT 57.580 47.619 17.92 0.00 0.00 3.08
2445 2714 3.119779 CCTTGTTGTCGACTCTCTCTACC 60.120 52.174 17.92 0.00 0.00 3.18
2447 2716 2.488545 GCCTTGTTGTCGACTCTCTCTA 59.511 50.000 17.92 0.00 0.00 2.43
2494 2814 5.238868 GGGTCTTGAGAAAAAGAACACTACC 59.761 44.000 4.53 0.00 44.28 3.18
2500 2820 4.278669 GGAAGGGGTCTTGAGAAAAAGAAC 59.721 45.833 0.00 0.00 42.19 3.01
2503 2823 4.075682 GAGGAAGGGGTCTTGAGAAAAAG 58.924 47.826 0.00 0.00 32.52 2.27
2510 2830 0.793617 AGGAGAGGAAGGGGTCTTGA 59.206 55.000 0.00 0.00 32.52 3.02
2511 2831 0.908198 CAGGAGAGGAAGGGGTCTTG 59.092 60.000 0.00 0.00 32.52 3.02
2512 2832 0.252927 CCAGGAGAGGAAGGGGTCTT 60.253 60.000 0.00 0.00 35.62 3.01
2513 2833 1.394151 CCAGGAGAGGAAGGGGTCT 59.606 63.158 0.00 0.00 0.00 3.85
2514 2834 0.547954 AACCAGGAGAGGAAGGGGTC 60.548 60.000 0.00 0.00 0.00 4.46
2515 2835 0.547954 GAACCAGGAGAGGAAGGGGT 60.548 60.000 0.00 0.00 0.00 4.95
2516 2836 0.252927 AGAACCAGGAGAGGAAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
2517 2837 1.662686 AAGAACCAGGAGAGGAAGGG 58.337 55.000 0.00 0.00 0.00 3.95
2518 2838 4.209307 GTTAAGAACCAGGAGAGGAAGG 57.791 50.000 0.00 0.00 0.00 3.46
2531 2851 9.788960 CCTGCTTTCTAATTAATGGTTAAGAAC 57.211 33.333 0.00 0.00 0.00 3.01
2532 2852 8.466798 GCCTGCTTTCTAATTAATGGTTAAGAA 58.533 33.333 0.00 0.00 0.00 2.52
2533 2853 7.834181 AGCCTGCTTTCTAATTAATGGTTAAGA 59.166 33.333 0.00 0.00 0.00 2.10
2534 2854 8.000780 AGCCTGCTTTCTAATTAATGGTTAAG 57.999 34.615 0.00 0.00 0.00 1.85
2535 2855 7.954666 AGCCTGCTTTCTAATTAATGGTTAA 57.045 32.000 0.00 0.00 0.00 2.01
2536 2856 9.640952 ATTAGCCTGCTTTCTAATTAATGGTTA 57.359 29.630 0.00 0.00 33.13 2.85
2537 2857 7.954666 TTAGCCTGCTTTCTAATTAATGGTT 57.045 32.000 0.00 0.00 0.00 3.67
2538 2858 7.561356 ACATTAGCCTGCTTTCTAATTAATGGT 59.439 33.333 0.00 0.00 34.33 3.55
2539 2859 7.864379 CACATTAGCCTGCTTTCTAATTAATGG 59.136 37.037 0.00 0.00 34.33 3.16
2540 2860 7.864379 CCACATTAGCCTGCTTTCTAATTAATG 59.136 37.037 0.00 1.51 34.33 1.90
2541 2861 7.561356 ACCACATTAGCCTGCTTTCTAATTAAT 59.439 33.333 0.00 0.00 34.33 1.40
2542 2862 6.889722 ACCACATTAGCCTGCTTTCTAATTAA 59.110 34.615 0.00 0.00 34.33 1.40
2543 2863 6.423182 ACCACATTAGCCTGCTTTCTAATTA 58.577 36.000 0.00 0.00 34.33 1.40
2544 2864 5.264395 ACCACATTAGCCTGCTTTCTAATT 58.736 37.500 0.00 0.00 34.33 1.40
2545 2865 4.860022 ACCACATTAGCCTGCTTTCTAAT 58.140 39.130 0.00 0.00 36.30 1.73
2546 2866 4.301072 ACCACATTAGCCTGCTTTCTAA 57.699 40.909 0.00 0.00 0.00 2.10
2547 2867 4.469945 AGTACCACATTAGCCTGCTTTCTA 59.530 41.667 0.00 0.00 0.00 2.10
2548 2868 2.887151 ACCACATTAGCCTGCTTTCT 57.113 45.000 0.00 0.00 0.00 2.52
2549 2869 3.610911 AGTACCACATTAGCCTGCTTTC 58.389 45.455 0.00 0.00 0.00 2.62
2550 2870 3.610911 GAGTACCACATTAGCCTGCTTT 58.389 45.455 0.00 0.00 0.00 3.51
2551 2871 2.092914 GGAGTACCACATTAGCCTGCTT 60.093 50.000 0.00 0.00 35.97 3.91
2552 2872 1.486726 GGAGTACCACATTAGCCTGCT 59.513 52.381 0.00 0.00 35.97 4.24
2553 2873 1.209504 TGGAGTACCACATTAGCCTGC 59.790 52.381 0.00 0.00 41.77 4.85
2554 2874 3.627395 TTGGAGTACCACATTAGCCTG 57.373 47.619 0.00 0.00 46.80 4.85
2555 2875 6.101150 TGAATATTGGAGTACCACATTAGCCT 59.899 38.462 0.00 0.00 46.80 4.58
2556 2876 6.296026 TGAATATTGGAGTACCACATTAGCC 58.704 40.000 0.00 0.00 46.80 3.93
2557 2877 6.073003 GCTGAATATTGGAGTACCACATTAGC 60.073 42.308 0.00 0.00 46.80 3.09
2558 2878 6.992123 TGCTGAATATTGGAGTACCACATTAG 59.008 38.462 0.00 0.00 46.80 1.73
2559 2879 6.894682 TGCTGAATATTGGAGTACCACATTA 58.105 36.000 0.00 0.00 46.80 1.90
2560 2880 5.754782 TGCTGAATATTGGAGTACCACATT 58.245 37.500 0.00 0.00 46.80 2.71
2561 2881 5.372343 TGCTGAATATTGGAGTACCACAT 57.628 39.130 0.00 0.00 46.80 3.21
2562 2882 4.835284 TGCTGAATATTGGAGTACCACA 57.165 40.909 0.00 0.00 46.80 4.17
2563 2883 5.428253 TCTTGCTGAATATTGGAGTACCAC 58.572 41.667 0.00 0.00 46.80 4.16
2564 2884 5.692115 TCTTGCTGAATATTGGAGTACCA 57.308 39.130 0.00 0.00 45.34 3.25
2565 2885 7.573968 ATTTCTTGCTGAATATTGGAGTACC 57.426 36.000 0.00 0.00 34.24 3.34
2566 2886 9.937175 GTTATTTCTTGCTGAATATTGGAGTAC 57.063 33.333 0.00 0.00 34.24 2.73
2567 2887 9.679661 TGTTATTTCTTGCTGAATATTGGAGTA 57.320 29.630 0.00 0.00 34.24 2.59
2568 2888 8.579850 TGTTATTTCTTGCTGAATATTGGAGT 57.420 30.769 0.00 0.00 34.24 3.85
2577 2897 8.726988 GGTTGTAGTATGTTATTTCTTGCTGAA 58.273 33.333 0.00 0.00 0.00 3.02
2578 2898 7.880713 TGGTTGTAGTATGTTATTTCTTGCTGA 59.119 33.333 0.00 0.00 0.00 4.26
2579 2899 8.039603 TGGTTGTAGTATGTTATTTCTTGCTG 57.960 34.615 0.00 0.00 0.00 4.41
2580 2900 8.677300 CATGGTTGTAGTATGTTATTTCTTGCT 58.323 33.333 0.00 0.00 0.00 3.91
2581 2901 8.458843 ACATGGTTGTAGTATGTTATTTCTTGC 58.541 33.333 0.00 0.00 33.16 4.01
2584 2904 9.515226 ACAACATGGTTGTAGTATGTTATTTCT 57.485 29.630 12.64 0.00 41.60 2.52
2591 2911 9.899661 ACAATATACAACATGGTTGTAGTATGT 57.100 29.630 21.88 20.56 38.17 2.29
2593 2913 9.899661 ACACAATATACAACATGGTTGTAGTAT 57.100 29.630 21.88 16.72 38.17 2.12
2594 2914 9.157104 CACACAATATACAACATGGTTGTAGTA 57.843 33.333 21.88 15.66 38.17 1.82
2595 2915 7.663905 ACACACAATATACAACATGGTTGTAGT 59.336 33.333 21.88 13.91 38.17 2.73
2596 2916 7.962373 CACACACAATATACAACATGGTTGTAG 59.038 37.037 21.88 13.41 38.17 2.74
2597 2917 7.574030 GCACACACAATATACAACATGGTTGTA 60.574 37.037 20.35 20.35 38.99 2.41
2598 2918 6.676950 CACACACAATATACAACATGGTTGT 58.323 36.000 17.61 17.61 37.82 3.32
2599 2919 5.572511 GCACACACAATATACAACATGGTTG 59.427 40.000 7.51 7.51 0.00 3.77
2600 2920 5.476599 AGCACACACAATATACAACATGGTT 59.523 36.000 0.00 0.00 0.00 3.67
2601 2921 5.009631 AGCACACACAATATACAACATGGT 58.990 37.500 0.00 0.00 0.00 3.55
2602 2922 5.106197 ACAGCACACACAATATACAACATGG 60.106 40.000 0.00 0.00 0.00 3.66
2603 2923 5.796437 CACAGCACACACAATATACAACATG 59.204 40.000 0.00 0.00 0.00 3.21
2604 2924 5.619757 GCACAGCACACACAATATACAACAT 60.620 40.000 0.00 0.00 0.00 2.71
2605 2925 4.320129 GCACAGCACACACAATATACAACA 60.320 41.667 0.00 0.00 0.00 3.33
2606 2926 4.083324 AGCACAGCACACACAATATACAAC 60.083 41.667 0.00 0.00 0.00 3.32
2607 2927 4.071423 AGCACAGCACACACAATATACAA 58.929 39.130 0.00 0.00 0.00 2.41
2608 2928 3.673902 AGCACAGCACACACAATATACA 58.326 40.909 0.00 0.00 0.00 2.29
2609 2929 3.935203 AGAGCACAGCACACACAATATAC 59.065 43.478 0.00 0.00 0.00 1.47
2610 2930 4.081476 AGAGAGCACAGCACACACAATATA 60.081 41.667 0.00 0.00 0.00 0.86
2611 2931 3.005554 GAGAGCACAGCACACACAATAT 58.994 45.455 0.00 0.00 0.00 1.28
2612 2932 2.037641 AGAGAGCACAGCACACACAATA 59.962 45.455 0.00 0.00 0.00 1.90
2613 2933 1.202734 AGAGAGCACAGCACACACAAT 60.203 47.619 0.00 0.00 0.00 2.71
2614 2934 0.178767 AGAGAGCACAGCACACACAA 59.821 50.000 0.00 0.00 0.00 3.33
2615 2935 0.531311 CAGAGAGCACAGCACACACA 60.531 55.000 0.00 0.00 0.00 3.72
2616 2936 1.226686 CCAGAGAGCACAGCACACAC 61.227 60.000 0.00 0.00 0.00 3.82
2617 2937 1.070275 CCAGAGAGCACAGCACACA 59.930 57.895 0.00 0.00 0.00 3.72
2618 2938 0.318441 TACCAGAGAGCACAGCACAC 59.682 55.000 0.00 0.00 0.00 3.82
2619 2939 1.269958 ATACCAGAGAGCACAGCACA 58.730 50.000 0.00 0.00 0.00 4.57
2620 2940 3.742433 ATATACCAGAGAGCACAGCAC 57.258 47.619 0.00 0.00 0.00 4.40
2621 2941 4.760530 AAATATACCAGAGAGCACAGCA 57.239 40.909 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.