Multiple sequence alignment - TraesCS6B01G397000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G397000 chr6B 100.000 4658 0 0 1 4658 672637473 672632816 0.000000e+00 8602.0
1 TraesCS6B01G397000 chr6B 95.637 2888 90 8 1012 3892 673675618 673678476 0.000000e+00 4602.0
2 TraesCS6B01G397000 chr6B 85.428 1448 188 16 1553 2984 672680764 672682204 0.000000e+00 1483.0
3 TraesCS6B01G397000 chr6B 83.546 1489 193 38 1552 3015 673757075 673758536 0.000000e+00 1345.0
4 TraesCS6B01G397000 chr6B 86.345 1201 148 8 2058 3246 673365678 673364482 0.000000e+00 1295.0
5 TraesCS6B01G397000 chr6B 87.765 989 114 6 2060 3044 672506946 672505961 0.000000e+00 1149.0
6 TraesCS6B01G397000 chr6B 88.005 867 90 8 3134 3988 672505949 672505085 0.000000e+00 1013.0
7 TraesCS6B01G397000 chr6B 84.945 1003 135 12 2058 3052 672894335 672895329 0.000000e+00 1002.0
8 TraesCS6B01G397000 chr6B 84.731 1002 139 11 2058 3052 672944911 672945905 0.000000e+00 990.0
9 TraesCS6B01G397000 chr6B 82.909 942 130 15 1024 1954 672883343 672884264 0.000000e+00 819.0
10 TraesCS6B01G397000 chr6B 93.991 466 19 4 374 833 673670803 673671265 0.000000e+00 697.0
11 TraesCS6B01G397000 chr6B 83.333 744 82 24 3134 3856 672682254 672682976 0.000000e+00 649.0
12 TraesCS6B01G397000 chr6B 87.226 501 41 7 4036 4535 673681520 673681998 2.450000e-152 549.0
13 TraesCS6B01G397000 chr6B 86.310 504 62 5 3134 3632 672619490 672618989 4.100000e-150 542.0
14 TraesCS6B01G397000 chr6B 87.158 475 52 7 3131 3599 673698552 673699023 8.870000e-147 531.0
15 TraesCS6B01G397000 chr6B 79.765 766 107 33 748 1470 672679957 672680717 3.210000e-141 512.0
16 TraesCS6B01G397000 chr6B 86.742 445 57 2 1022 1465 672507960 672507517 1.160000e-135 494.0
17 TraesCS6B01G397000 chr6B 85.345 464 54 11 1015 1477 673696411 673696861 7.060000e-128 468.0
18 TraesCS6B01G397000 chr6B 97.297 148 4 0 863 1010 673675427 673675574 7.740000e-63 252.0
19 TraesCS6B01G397000 chr6B 78.453 362 48 17 4028 4367 672502916 672502563 4.720000e-50 209.0
20 TraesCS6B01G397000 chr6B 78.806 335 40 17 4028 4339 673759660 673759986 3.680000e-46 196.0
21 TraesCS6B01G397000 chr6B 79.695 197 25 11 4112 4302 673699558 673699745 1.360000e-25 128.0
22 TraesCS6B01G397000 chr6B 81.366 161 22 3 4381 4539 672947300 672947454 1.760000e-24 124.0
23 TraesCS6B01G397000 chr6B 80.460 174 22 6 4384 4556 673606493 673606331 6.330000e-24 122.0
24 TraesCS6B01G397000 chr6B 92.982 57 3 1 1 56 673670748 673670804 1.070000e-11 82.4
25 TraesCS6B01G397000 chr6B 78.906 128 17 7 4028 4151 672896272 672896393 1.390000e-10 78.7
26 TraesCS6B01G397000 chr6B 78.906 128 17 7 4028 4151 672946940 672947061 1.390000e-10 78.7
27 TraesCS6B01G397000 chr6B 78.906 128 17 7 4028 4151 673606865 673606744 1.390000e-10 78.7
28 TraesCS6B01G397000 chr6B 85.333 75 10 1 4387 4461 672502513 672502440 5.000000e-10 76.8
29 TraesCS6B01G397000 chr6B 84.000 75 11 1 4387 4461 673760062 673760135 2.330000e-08 71.3
30 TraesCS6B01G397000 chr6D 96.192 2994 76 12 1011 3988 445825768 445822797 0.000000e+00 4863.0
31 TraesCS6B01G397000 chr6D 83.176 1480 200 33 1552 3015 445799405 445797959 0.000000e+00 1308.0
32 TraesCS6B01G397000 chr6D 87.486 911 107 6 2113 3020 445839183 445840089 0.000000e+00 1044.0
33 TraesCS6B01G397000 chr6D 91.291 643 29 15 374 1010 445826432 445825811 0.000000e+00 852.0
34 TraesCS6B01G397000 chr6D 88.395 517 35 11 4028 4539 445822637 445822141 2.400000e-167 599.0
35 TraesCS6B01G397000 chr6D 86.172 499 62 5 3129 3622 445810790 445810294 2.470000e-147 532.0
36 TraesCS6B01G397000 chr6D 83.738 535 71 11 3103 3633 445797824 445797302 4.190000e-135 492.0
37 TraesCS6B01G397000 chr6D 85.776 464 54 9 1015 1478 445812953 445812502 9.060000e-132 481.0
38 TraesCS6B01G397000 chr6D 85.065 462 60 5 1024 1476 445800046 445799585 3.280000e-126 462.0
39 TraesCS6B01G397000 chr6D 75.210 476 66 27 4028 4461 445796765 445796300 1.330000e-40 178.0
40 TraesCS6B01G397000 chr6D 80.714 140 17 6 710 848 445837815 445837945 2.970000e-17 100.0
41 TraesCS6B01G397000 chr6D 96.000 50 1 1 1 49 445826487 445826438 3.860000e-11 80.5
42 TraesCS6B01G397000 chr6D 85.185 81 6 2 4381 4461 445846700 445846774 1.390000e-10 78.7
43 TraesCS6B01G397000 chr6A 89.049 1461 155 3 1560 3019 592501351 592499895 0.000000e+00 1807.0
44 TraesCS6B01G397000 chr6A 78.863 1566 173 76 3135 4653 592499761 592498307 0.000000e+00 913.0
45 TraesCS6B01G397000 chr6A 86.160 513 59 8 3129 3632 592492954 592492445 1.140000e-150 544.0
46 TraesCS6B01G397000 chr6A 85.872 453 64 0 1024 1476 592478564 592478112 2.520000e-132 483.0
47 TraesCS6B01G397000 chr6A 81.598 413 65 6 1552 1954 592494493 592494082 9.660000e-87 331.0
48 TraesCS6B01G397000 chr6A 81.022 137 16 8 4030 4162 592539656 592539786 2.970000e-17 100.0
49 TraesCS6B01G397000 chr7A 91.579 285 23 1 76 360 202237853 202237570 4.370000e-105 392.0
50 TraesCS6B01G397000 chr7A 84.774 243 37 0 1553 1795 97405867 97405625 1.290000e-60 244.0
51 TraesCS6B01G397000 chr2A 88.065 310 36 1 51 360 603681316 603681624 2.650000e-97 366.0
52 TraesCS6B01G397000 chr2D 88.235 306 32 3 53 356 3954517 3954214 3.430000e-96 363.0
53 TraesCS6B01G397000 chr2D 88.235 306 32 3 53 356 4016711 4016408 3.430000e-96 363.0
54 TraesCS6B01G397000 chr5B 88.158 304 35 1 57 360 239702588 239702890 1.230000e-95 361.0
55 TraesCS6B01G397000 chr4B 87.869 305 36 1 56 360 514068111 514068414 1.590000e-94 357.0
56 TraesCS6B01G397000 chr4A 87.869 305 36 1 56 360 551325006 551324703 1.590000e-94 357.0
57 TraesCS6B01G397000 chr5D 88.255 298 34 1 63 360 16748678 16748974 5.730000e-94 355.0
58 TraesCS6B01G397000 chr5D 87.582 306 37 1 55 360 507509761 507510065 2.060000e-93 353.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G397000 chr6B 672632816 672637473 4657 True 8602.000000 8602 100.000000 1 4658 1 chr6B.!!$R2 4657
1 TraesCS6B01G397000 chr6B 673675427 673681998 6571 False 1801.000000 4602 93.386667 863 4535 3 chr6B.!!$F6 3672
2 TraesCS6B01G397000 chr6B 673364482 673365678 1196 True 1295.000000 1295 86.345000 2058 3246 1 chr6B.!!$R3 1188
3 TraesCS6B01G397000 chr6B 672679957 672682976 3019 False 881.333333 1483 82.842000 748 3856 3 chr6B.!!$F2 3108
4 TraesCS6B01G397000 chr6B 672883343 672884264 921 False 819.000000 819 82.909000 1024 1954 1 chr6B.!!$F1 930
5 TraesCS6B01G397000 chr6B 672502440 672507960 5520 True 588.360000 1149 85.259600 1022 4461 5 chr6B.!!$R4 3439
6 TraesCS6B01G397000 chr6B 672618989 672619490 501 True 542.000000 542 86.310000 3134 3632 1 chr6B.!!$R1 498
7 TraesCS6B01G397000 chr6B 672894335 672896393 2058 False 540.350000 1002 81.925500 2058 4151 2 chr6B.!!$F3 2093
8 TraesCS6B01G397000 chr6B 673757075 673760135 3060 False 537.433333 1345 82.117333 1552 4461 3 chr6B.!!$F8 2909
9 TraesCS6B01G397000 chr6B 672944911 672947454 2543 False 397.566667 990 81.667667 2058 4539 3 chr6B.!!$F4 2481
10 TraesCS6B01G397000 chr6B 673670748 673671265 517 False 389.700000 697 93.486500 1 833 2 chr6B.!!$F5 832
11 TraesCS6B01G397000 chr6B 673696411 673699745 3334 False 375.666667 531 84.066000 1015 4302 3 chr6B.!!$F7 3287
12 TraesCS6B01G397000 chr6D 445822141 445826487 4346 True 1598.625000 4863 92.969500 1 4539 4 chr6D.!!$R3 4538
13 TraesCS6B01G397000 chr6D 445796300 445800046 3746 True 610.000000 1308 81.797250 1024 4461 4 chr6D.!!$R1 3437
14 TraesCS6B01G397000 chr6D 445837815 445840089 2274 False 572.000000 1044 84.100000 710 3020 2 chr6D.!!$F2 2310
15 TraesCS6B01G397000 chr6D 445810294 445812953 2659 True 506.500000 532 85.974000 1015 3622 2 chr6D.!!$R2 2607
16 TraesCS6B01G397000 chr6A 592492445 592501351 8906 True 898.750000 1807 83.917500 1552 4653 4 chr6A.!!$R2 3101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 870 0.031178 GGCTTTGAATATGCAGGGCG 59.969 55.0 0.0 0.0 0.00 6.13 F
1478 1617 0.179018 AAGTTGCTGGACTGGTGGTC 60.179 55.0 0.0 0.0 43.79 4.02 F
1969 2120 0.038526 ACTCCGCACTTTACCGTCAG 60.039 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2038 0.179084 CTATGGCGGTGGTACCAGTG 60.179 60.0 16.93 12.02 39.88 3.66 R
2625 9939 0.741326 CCAAGATCGCGAAGAGGAGA 59.259 55.0 15.24 0.00 0.00 3.71 R
3667 11212 2.087462 TAGCGGCGCTGCAGATATGT 62.087 55.0 41.59 21.76 40.10 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.038282 TGCTTCACTAGTTTACTTGACCGA 59.962 41.667 0.00 0.00 0.00 4.69
55 57 2.638744 AGGAGACTTGCTTGCTTGC 58.361 52.632 0.00 0.00 37.44 4.01
56 58 1.208614 GGAGACTTGCTTGCTTGCG 59.791 57.895 0.00 0.00 35.36 4.85
57 59 1.208614 GAGACTTGCTTGCTTGCGG 59.791 57.895 0.00 0.00 35.36 5.69
58 60 1.227943 AGACTTGCTTGCTTGCGGA 60.228 52.632 0.00 0.00 35.36 5.54
59 61 1.208614 GACTTGCTTGCTTGCGGAG 59.791 57.895 0.00 0.00 35.36 4.63
74 76 1.403814 CGGAGCTGGATCCTCTAACA 58.596 55.000 14.23 0.00 37.20 2.41
75 77 1.967066 CGGAGCTGGATCCTCTAACAT 59.033 52.381 14.23 0.00 37.20 2.71
76 78 2.366916 CGGAGCTGGATCCTCTAACATT 59.633 50.000 14.23 0.00 37.20 2.71
77 79 3.737850 GGAGCTGGATCCTCTAACATTG 58.262 50.000 14.23 0.00 36.35 2.82
78 80 3.389329 GGAGCTGGATCCTCTAACATTGA 59.611 47.826 14.23 0.00 36.35 2.57
79 81 4.502950 GGAGCTGGATCCTCTAACATTGAG 60.503 50.000 14.23 0.00 36.35 3.02
80 82 4.293494 AGCTGGATCCTCTAACATTGAGA 58.707 43.478 14.23 0.00 33.68 3.27
81 83 4.718774 AGCTGGATCCTCTAACATTGAGAA 59.281 41.667 14.23 0.00 33.68 2.87
82 84 5.055812 GCTGGATCCTCTAACATTGAGAAG 58.944 45.833 14.23 0.00 33.68 2.85
83 85 5.396213 GCTGGATCCTCTAACATTGAGAAGT 60.396 44.000 14.23 0.00 33.68 3.01
84 86 6.183360 GCTGGATCCTCTAACATTGAGAAGTA 60.183 42.308 14.23 0.00 33.68 2.24
85 87 7.633772 GCTGGATCCTCTAACATTGAGAAGTAA 60.634 40.741 14.23 0.00 33.68 2.24
86 88 8.146053 TGGATCCTCTAACATTGAGAAGTAAA 57.854 34.615 14.23 0.00 33.68 2.01
87 89 8.602424 TGGATCCTCTAACATTGAGAAGTAAAA 58.398 33.333 14.23 0.00 33.68 1.52
88 90 9.620259 GGATCCTCTAACATTGAGAAGTAAAAT 57.380 33.333 3.84 0.00 33.68 1.82
91 93 9.436957 TCCTCTAACATTGAGAAGTAAAATCAC 57.563 33.333 0.00 0.00 33.68 3.06
92 94 8.383619 CCTCTAACATTGAGAAGTAAAATCACG 58.616 37.037 0.00 0.00 33.68 4.35
93 95 8.251750 TCTAACATTGAGAAGTAAAATCACGG 57.748 34.615 0.00 0.00 0.00 4.94
94 96 6.877611 AACATTGAGAAGTAAAATCACGGT 57.122 33.333 0.00 0.00 0.00 4.83
95 97 6.241207 ACATTGAGAAGTAAAATCACGGTG 57.759 37.500 0.56 0.56 0.00 4.94
96 98 5.995282 ACATTGAGAAGTAAAATCACGGTGA 59.005 36.000 14.01 14.01 0.00 4.02
97 99 6.655003 ACATTGAGAAGTAAAATCACGGTGAT 59.345 34.615 17.62 17.62 39.09 3.06
98 100 7.822334 ACATTGAGAAGTAAAATCACGGTGATA 59.178 33.333 22.91 6.03 35.76 2.15
99 101 7.591006 TTGAGAAGTAAAATCACGGTGATAC 57.409 36.000 22.91 17.13 35.76 2.24
100 102 6.693466 TGAGAAGTAAAATCACGGTGATACA 58.307 36.000 22.91 9.19 35.76 2.29
101 103 6.811665 TGAGAAGTAAAATCACGGTGATACAG 59.188 38.462 22.91 0.00 35.76 2.74
102 104 6.698380 AGAAGTAAAATCACGGTGATACAGT 58.302 36.000 22.91 11.40 35.76 3.55
103 105 6.590292 AGAAGTAAAATCACGGTGATACAGTG 59.410 38.462 22.91 5.99 43.97 3.66
104 106 5.790593 AGTAAAATCACGGTGATACAGTGT 58.209 37.500 22.91 6.28 43.28 3.55
105 107 5.867716 AGTAAAATCACGGTGATACAGTGTC 59.132 40.000 22.91 10.51 43.28 3.67
106 108 3.953712 AATCACGGTGATACAGTGTCA 57.046 42.857 22.91 0.00 43.28 3.58
107 109 3.510388 ATCACGGTGATACAGTGTCAG 57.490 47.619 21.49 0.00 43.28 3.51
108 110 1.067846 TCACGGTGATACAGTGTCAGC 60.068 52.381 17.17 17.17 43.28 4.26
109 111 0.246635 ACGGTGATACAGTGTCAGCC 59.753 55.000 20.16 13.72 40.11 4.85
110 112 0.532573 CGGTGATACAGTGTCAGCCT 59.467 55.000 20.16 0.00 40.11 4.58
111 113 1.749063 CGGTGATACAGTGTCAGCCTA 59.251 52.381 20.16 0.00 40.11 3.93
112 114 2.223595 CGGTGATACAGTGTCAGCCTAG 60.224 54.545 20.16 6.28 40.11 3.02
113 115 2.761208 GGTGATACAGTGTCAGCCTAGT 59.239 50.000 16.49 0.00 37.96 2.57
114 116 3.429547 GGTGATACAGTGTCAGCCTAGTG 60.430 52.174 16.49 0.00 37.96 2.74
115 117 2.166459 TGATACAGTGTCAGCCTAGTGC 59.834 50.000 0.00 0.00 41.71 4.40
116 118 1.627864 TACAGTGTCAGCCTAGTGCA 58.372 50.000 0.00 0.00 44.83 4.57
117 119 0.758734 ACAGTGTCAGCCTAGTGCAA 59.241 50.000 0.00 0.00 44.83 4.08
118 120 1.140852 ACAGTGTCAGCCTAGTGCAAA 59.859 47.619 0.00 0.00 44.83 3.68
119 121 2.221169 CAGTGTCAGCCTAGTGCAAAA 58.779 47.619 0.00 0.00 44.83 2.44
120 122 2.816087 CAGTGTCAGCCTAGTGCAAAAT 59.184 45.455 0.00 0.00 44.83 1.82
121 123 2.816087 AGTGTCAGCCTAGTGCAAAATG 59.184 45.455 0.00 0.00 44.83 2.32
122 124 2.095059 GTGTCAGCCTAGTGCAAAATGG 60.095 50.000 0.00 0.00 44.83 3.16
123 125 2.224744 TGTCAGCCTAGTGCAAAATGGA 60.225 45.455 0.00 0.00 44.83 3.41
124 126 2.421424 GTCAGCCTAGTGCAAAATGGAG 59.579 50.000 0.00 0.00 44.83 3.86
125 127 2.305635 TCAGCCTAGTGCAAAATGGAGA 59.694 45.455 0.00 0.00 44.83 3.71
126 128 3.084039 CAGCCTAGTGCAAAATGGAGAA 58.916 45.455 0.00 0.00 44.83 2.87
127 129 3.128242 CAGCCTAGTGCAAAATGGAGAAG 59.872 47.826 0.00 0.00 44.83 2.85
128 130 2.424956 GCCTAGTGCAAAATGGAGAAGG 59.575 50.000 0.00 0.00 40.77 3.46
129 131 3.019564 CCTAGTGCAAAATGGAGAAGGG 58.980 50.000 0.00 0.00 0.00 3.95
130 132 2.978156 AGTGCAAAATGGAGAAGGGA 57.022 45.000 0.00 0.00 0.00 4.20
131 133 3.243359 AGTGCAAAATGGAGAAGGGAA 57.757 42.857 0.00 0.00 0.00 3.97
132 134 3.160269 AGTGCAAAATGGAGAAGGGAAG 58.840 45.455 0.00 0.00 0.00 3.46
133 135 2.893489 GTGCAAAATGGAGAAGGGAAGT 59.107 45.455 0.00 0.00 0.00 3.01
134 136 3.321968 GTGCAAAATGGAGAAGGGAAGTT 59.678 43.478 0.00 0.00 0.00 2.66
135 137 4.522789 GTGCAAAATGGAGAAGGGAAGTTA 59.477 41.667 0.00 0.00 0.00 2.24
136 138 4.766891 TGCAAAATGGAGAAGGGAAGTTAG 59.233 41.667 0.00 0.00 0.00 2.34
137 139 5.010282 GCAAAATGGAGAAGGGAAGTTAGA 58.990 41.667 0.00 0.00 0.00 2.10
138 140 5.124617 GCAAAATGGAGAAGGGAAGTTAGAG 59.875 44.000 0.00 0.00 0.00 2.43
139 141 6.476378 CAAAATGGAGAAGGGAAGTTAGAGA 58.524 40.000 0.00 0.00 0.00 3.10
140 142 5.685520 AATGGAGAAGGGAAGTTAGAGAC 57.314 43.478 0.00 0.00 0.00 3.36
141 143 4.405756 TGGAGAAGGGAAGTTAGAGACT 57.594 45.455 0.00 0.00 41.47 3.24
142 144 4.090090 TGGAGAAGGGAAGTTAGAGACTG 58.910 47.826 0.00 0.00 39.00 3.51
143 145 4.090819 GGAGAAGGGAAGTTAGAGACTGT 58.909 47.826 0.00 0.00 39.00 3.55
144 146 4.528987 GGAGAAGGGAAGTTAGAGACTGTT 59.471 45.833 0.00 0.00 39.00 3.16
145 147 5.715753 GGAGAAGGGAAGTTAGAGACTGTTA 59.284 44.000 0.00 0.00 39.00 2.41
146 148 6.127563 GGAGAAGGGAAGTTAGAGACTGTTAG 60.128 46.154 0.00 0.00 39.00 2.34
147 149 6.316513 AGAAGGGAAGTTAGAGACTGTTAGT 58.683 40.000 0.00 0.00 39.00 2.24
148 150 7.468496 AGAAGGGAAGTTAGAGACTGTTAGTA 58.532 38.462 0.00 0.00 39.00 1.82
149 151 7.612633 AGAAGGGAAGTTAGAGACTGTTAGTAG 59.387 40.741 0.00 0.00 39.00 2.57
150 152 6.189133 AGGGAAGTTAGAGACTGTTAGTAGG 58.811 44.000 0.00 0.00 39.00 3.18
151 153 5.951148 GGGAAGTTAGAGACTGTTAGTAGGT 59.049 44.000 0.00 0.00 39.00 3.08
152 154 7.037008 AGGGAAGTTAGAGACTGTTAGTAGGTA 60.037 40.741 0.00 0.00 39.00 3.08
153 155 7.282901 GGGAAGTTAGAGACTGTTAGTAGGTAG 59.717 44.444 0.00 0.00 39.00 3.18
154 156 7.828717 GGAAGTTAGAGACTGTTAGTAGGTAGT 59.171 40.741 0.00 0.00 39.00 2.73
155 157 9.230122 GAAGTTAGAGACTGTTAGTAGGTAGTT 57.770 37.037 0.00 0.00 39.00 2.24
157 159 9.889128 AGTTAGAGACTGTTAGTAGGTAGTTAG 57.111 37.037 0.00 0.00 37.17 2.34
158 160 9.665719 GTTAGAGACTGTTAGTAGGTAGTTAGT 57.334 37.037 0.00 0.00 0.00 2.24
161 163 9.265862 AGAGACTGTTAGTAGGTAGTTAGTAGA 57.734 37.037 0.00 0.00 0.00 2.59
277 279 8.729805 TGTACACAGTATATCATCAATTTGCA 57.270 30.769 0.00 0.00 0.00 4.08
278 280 9.171877 TGTACACAGTATATCATCAATTTGCAA 57.828 29.630 0.00 0.00 0.00 4.08
334 336 8.595362 ATGGATAAAAAGAAGGAAAGTTAGGG 57.405 34.615 0.00 0.00 0.00 3.53
335 337 7.532199 TGGATAAAAAGAAGGAAAGTTAGGGT 58.468 34.615 0.00 0.00 0.00 4.34
336 338 8.671409 TGGATAAAAAGAAGGAAAGTTAGGGTA 58.329 33.333 0.00 0.00 0.00 3.69
337 339 9.696572 GGATAAAAAGAAGGAAAGTTAGGGTAT 57.303 33.333 0.00 0.00 0.00 2.73
340 342 8.777578 AAAAAGAAGGAAAGTTAGGGTATTGT 57.222 30.769 0.00 0.00 0.00 2.71
341 343 9.871175 AAAAAGAAGGAAAGTTAGGGTATTGTA 57.129 29.630 0.00 0.00 0.00 2.41
342 344 9.516546 AAAAGAAGGAAAGTTAGGGTATTGTAG 57.483 33.333 0.00 0.00 0.00 2.74
343 345 6.651086 AGAAGGAAAGTTAGGGTATTGTAGC 58.349 40.000 0.00 0.00 0.00 3.58
344 346 6.444171 AGAAGGAAAGTTAGGGTATTGTAGCT 59.556 38.462 0.00 0.00 0.00 3.32
345 347 6.638021 AGGAAAGTTAGGGTATTGTAGCTT 57.362 37.500 0.00 0.00 0.00 3.74
346 348 6.651086 AGGAAAGTTAGGGTATTGTAGCTTC 58.349 40.000 0.00 0.00 0.00 3.86
347 349 6.444171 AGGAAAGTTAGGGTATTGTAGCTTCT 59.556 38.462 0.00 0.00 0.00 2.85
348 350 6.762187 GGAAAGTTAGGGTATTGTAGCTTCTC 59.238 42.308 0.00 0.00 0.00 2.87
349 351 7.364851 GGAAAGTTAGGGTATTGTAGCTTCTCT 60.365 40.741 0.00 0.00 0.00 3.10
350 352 8.605325 AAAGTTAGGGTATTGTAGCTTCTCTA 57.395 34.615 0.00 0.00 0.00 2.43
351 353 8.605325 AAGTTAGGGTATTGTAGCTTCTCTAA 57.395 34.615 0.00 0.00 0.00 2.10
352 354 8.785184 AGTTAGGGTATTGTAGCTTCTCTAAT 57.215 34.615 0.00 0.00 0.00 1.73
353 355 9.214962 AGTTAGGGTATTGTAGCTTCTCTAATT 57.785 33.333 0.00 0.00 0.00 1.40
354 356 9.833917 GTTAGGGTATTGTAGCTTCTCTAATTT 57.166 33.333 0.00 0.00 0.00 1.82
357 359 9.397280 AGGGTATTGTAGCTTCTCTAATTTTTC 57.603 33.333 0.00 0.00 0.00 2.29
358 360 9.397280 GGGTATTGTAGCTTCTCTAATTTTTCT 57.603 33.333 0.00 0.00 0.00 2.52
363 365 9.701098 TTGTAGCTTCTCTAATTTTTCTTACGA 57.299 29.630 0.00 0.00 0.00 3.43
364 366 9.871238 TGTAGCTTCTCTAATTTTTCTTACGAT 57.129 29.630 0.00 0.00 0.00 3.73
366 368 8.121167 AGCTTCTCTAATTTTTCTTACGATCG 57.879 34.615 14.88 14.88 0.00 3.69
367 369 7.222999 AGCTTCTCTAATTTTTCTTACGATCGG 59.777 37.037 20.98 1.30 0.00 4.18
368 370 7.516943 GCTTCTCTAATTTTTCTTACGATCGGG 60.517 40.741 20.98 9.23 0.00 5.14
369 371 6.870769 TCTCTAATTTTTCTTACGATCGGGT 58.129 36.000 20.98 1.14 0.00 5.28
370 372 7.325694 TCTCTAATTTTTCTTACGATCGGGTT 58.674 34.615 20.98 0.30 0.00 4.11
371 373 7.490402 TCTCTAATTTTTCTTACGATCGGGTTC 59.510 37.037 20.98 0.00 0.00 3.62
372 374 5.556355 AATTTTTCTTACGATCGGGTTCC 57.444 39.130 20.98 0.00 0.00 3.62
406 408 1.195115 CCCTTCTCCGATGACCTGAA 58.805 55.000 0.00 0.00 0.00 3.02
505 508 1.881498 GCAGAGAGACTTGGCAGCTTT 60.881 52.381 0.00 0.00 0.00 3.51
514 517 0.767375 TTGGCAGCTTTCTCCAGACT 59.233 50.000 0.00 0.00 0.00 3.24
528 531 2.277373 GACTACGACTCGCGCCAG 60.277 66.667 0.00 0.00 46.04 4.85
584 592 1.338200 CCTTTCTAACCTGTCGCTGCT 60.338 52.381 0.00 0.00 0.00 4.24
833 842 5.758784 GTGATAGTAAAATACTGGTGCTCCC 59.241 44.000 1.59 0.00 39.81 4.30
855 869 1.068127 CAGGCTTTGAATATGCAGGGC 59.932 52.381 0.00 4.74 0.00 5.19
856 870 0.031178 GGCTTTGAATATGCAGGGCG 59.969 55.000 0.00 0.00 0.00 6.13
857 871 0.595825 GCTTTGAATATGCAGGGCGC 60.596 55.000 0.00 0.00 42.89 6.53
929 1008 5.214293 AGTAAGTCGTCTTATTACCCCCAT 58.786 41.667 5.44 0.00 38.25 4.00
1407 1546 2.266055 CGGGACAAGAGCTCCACC 59.734 66.667 10.93 8.70 0.00 4.61
1425 1564 1.443872 CGTCTACTTCGCGGTGCTT 60.444 57.895 6.13 0.00 0.00 3.91
1472 1611 0.861837 GTCGTCAAGTTGCTGGACTG 59.138 55.000 0.00 0.00 32.58 3.51
1477 1616 0.466189 CAAGTTGCTGGACTGGTGGT 60.466 55.000 0.00 0.00 0.00 4.16
1478 1617 0.179018 AAGTTGCTGGACTGGTGGTC 60.179 55.000 0.00 0.00 43.79 4.02
1479 1618 1.148273 GTTGCTGGACTGGTGGTCA 59.852 57.895 0.00 0.00 46.16 4.02
1497 1639 2.210013 AGGCAAGCACTCCGACTCA 61.210 57.895 0.00 0.00 0.00 3.41
1507 1649 4.271816 CCGACTCATCCGGCTCCG 62.272 72.222 0.00 0.48 40.54 4.63
1617 1759 1.300465 CGCTGCGAGCATCACCTAT 60.300 57.895 18.66 0.00 42.58 2.57
1620 1762 1.945387 CTGCGAGCATCACCTATGTT 58.055 50.000 0.00 0.00 37.93 2.71
1718 1860 1.968017 ACCACAACCTGCGCATGAG 60.968 57.895 19.95 9.67 0.00 2.90
1730 1872 1.268352 GCGCATGAGGGTGTTTTTACA 59.732 47.619 0.30 0.00 0.00 2.41
1782 1924 2.298610 CTCATCACCATGCTGCTCATT 58.701 47.619 0.00 0.00 31.79 2.57
1783 1925 2.021457 TCATCACCATGCTGCTCATTG 58.979 47.619 0.00 0.00 31.79 2.82
1834 1985 1.991430 GTGCTCTACGTGTGCATCG 59.009 57.895 13.35 11.60 45.23 3.84
1904 2055 2.180159 GACACTGGTACCACCGCCAT 62.180 60.000 11.60 0.00 42.58 4.40
1943 2094 2.202690 CGTGCTGGCATTGGCATG 60.203 61.111 13.83 8.99 43.71 4.06
1954 2105 1.884579 CATTGGCATGCATCCTACTCC 59.115 52.381 21.36 0.00 0.00 3.85
1955 2106 0.179048 TTGGCATGCATCCTACTCCG 60.179 55.000 21.36 0.00 0.00 4.63
1962 2113 1.828595 TGCATCCTACTCCGCACTTTA 59.171 47.619 0.00 0.00 0.00 1.85
1967 2118 1.468736 CCTACTCCGCACTTTACCGTC 60.469 57.143 0.00 0.00 0.00 4.79
1968 2119 1.200716 CTACTCCGCACTTTACCGTCA 59.799 52.381 0.00 0.00 0.00 4.35
1969 2120 0.038526 ACTCCGCACTTTACCGTCAG 60.039 55.000 0.00 0.00 0.00 3.51
1973 2124 1.659098 CCGCACTTTACCGTCAGAATC 59.341 52.381 0.00 0.00 0.00 2.52
1976 2127 3.335579 GCACTTTACCGTCAGAATCCTT 58.664 45.455 0.00 0.00 0.00 3.36
1982 2133 3.045601 ACCGTCAGAATCCTTGTCTTG 57.954 47.619 0.00 0.00 0.00 3.02
1990 2141 4.823989 CAGAATCCTTGTCTTGTTGTTCCT 59.176 41.667 0.00 0.00 0.00 3.36
1994 2145 4.703897 TCCTTGTCTTGTTGTTCCTGTAG 58.296 43.478 0.00 0.00 0.00 2.74
1996 2147 5.104693 TCCTTGTCTTGTTGTTCCTGTAGAA 60.105 40.000 0.00 0.00 0.00 2.10
2042 2193 4.116961 CACAGGTACGAAACTGAACTGAA 58.883 43.478 10.86 0.00 38.09 3.02
2518 9826 2.615465 ATGGCCTTGGCAGGTGCTA 61.615 57.895 14.04 4.74 43.18 3.49
2625 9939 0.818040 AGAAGAGGCGCAAACGGTTT 60.818 50.000 10.83 0.00 40.57 3.27
2706 10023 0.107945 GCTTCTTGCTCCAGGACGAT 60.108 55.000 0.00 0.00 38.95 3.73
2895 10212 0.763652 TTTGTACGGCTGTGGGGTTA 59.236 50.000 8.92 0.00 0.00 2.85
2946 10263 1.564622 CACGCAACACCTCAAGACG 59.435 57.895 0.00 0.00 0.00 4.18
3110 10586 1.339610 CAATTCGGCACCCAAAGAACA 59.660 47.619 0.00 0.00 0.00 3.18
3111 10587 1.698506 ATTCGGCACCCAAAGAACAA 58.301 45.000 0.00 0.00 0.00 2.83
3112 10588 1.028905 TTCGGCACCCAAAGAACAAG 58.971 50.000 0.00 0.00 0.00 3.16
3113 10589 0.181587 TCGGCACCCAAAGAACAAGA 59.818 50.000 0.00 0.00 0.00 3.02
3114 10590 0.310854 CGGCACCCAAAGAACAAGAC 59.689 55.000 0.00 0.00 0.00 3.01
3115 10591 0.310854 GGCACCCAAAGAACAAGACG 59.689 55.000 0.00 0.00 0.00 4.18
3116 10592 1.305201 GCACCCAAAGAACAAGACGA 58.695 50.000 0.00 0.00 0.00 4.20
3117 10593 1.673920 GCACCCAAAGAACAAGACGAA 59.326 47.619 0.00 0.00 0.00 3.85
3118 10594 2.287009 GCACCCAAAGAACAAGACGAAG 60.287 50.000 0.00 0.00 0.00 3.79
3119 10595 3.202906 CACCCAAAGAACAAGACGAAGA 58.797 45.455 0.00 0.00 0.00 2.87
3120 10596 3.625764 CACCCAAAGAACAAGACGAAGAA 59.374 43.478 0.00 0.00 0.00 2.52
3121 10597 3.877508 ACCCAAAGAACAAGACGAAGAAG 59.122 43.478 0.00 0.00 0.00 2.85
3122 10598 4.127171 CCCAAAGAACAAGACGAAGAAGA 58.873 43.478 0.00 0.00 0.00 2.87
3123 10599 4.574828 CCCAAAGAACAAGACGAAGAAGAA 59.425 41.667 0.00 0.00 0.00 2.52
3124 10600 5.277538 CCCAAAGAACAAGACGAAGAAGAAG 60.278 44.000 0.00 0.00 0.00 2.85
3125 10601 5.277538 CCAAAGAACAAGACGAAGAAGAAGG 60.278 44.000 0.00 0.00 0.00 3.46
3126 10602 3.996480 AGAACAAGACGAAGAAGAAGGG 58.004 45.455 0.00 0.00 0.00 3.95
3127 10603 3.641906 AGAACAAGACGAAGAAGAAGGGA 59.358 43.478 0.00 0.00 0.00 4.20
3132 10608 4.529109 AGACGAAGAAGAAGGGAAGAAG 57.471 45.455 0.00 0.00 0.00 2.85
3139 10615 5.913946 AGAAGAAGGGAAGAAGGAAGAAA 57.086 39.130 0.00 0.00 0.00 2.52
3622 11167 1.461512 CGCTGGCACGTATTGTTTGTA 59.538 47.619 0.00 0.00 0.00 2.41
3681 11290 0.585357 CCAAGACATATCTGCAGCGC 59.415 55.000 9.47 0.00 34.48 5.92
3860 11557 4.630644 ATCGGATGAATAACCTGCATCT 57.369 40.909 0.00 0.00 38.69 2.90
3863 11560 3.675225 CGGATGAATAACCTGCATCTACG 59.325 47.826 0.00 0.00 38.69 3.51
3968 11676 3.178046 TCCTGACCCTATGTGCACTTTA 58.822 45.455 19.41 8.99 0.00 1.85
3972 11680 3.244284 TGACCCTATGTGCACTTTACGTT 60.244 43.478 19.41 0.00 0.00 3.99
4005 13836 9.813080 GAACTTGAAGCATTTGTTACTACTTAG 57.187 33.333 0.00 0.00 0.00 2.18
4071 16903 8.281531 TCAATGATGGATAGGAAACATACCTTT 58.718 33.333 0.00 0.00 38.76 3.11
4074 16906 7.638444 TGATGGATAGGAAACATACCTTTGAA 58.362 34.615 0.00 0.00 38.76 2.69
4079 16911 7.559897 GGATAGGAAACATACCTTTGAATCCAA 59.440 37.037 0.00 0.00 38.14 3.53
4088 16924 2.961062 CCTTTGAATCCAAGGGGCTATG 59.039 50.000 5.28 0.00 43.52 2.23
4099 16935 3.866582 GGCTATGGGACGCCAGCT 61.867 66.667 11.41 0.00 45.59 4.24
4110 16946 2.894387 GCCAGCTGCGTGATCTCC 60.894 66.667 8.66 0.00 0.00 3.71
4233 17093 2.656002 ACGTAAGCTAGCATCAGAGGA 58.344 47.619 18.83 0.00 45.62 3.71
4288 17149 2.728817 GGTCGCCTCGATCGGAAT 59.271 61.111 16.41 0.00 38.42 3.01
4335 17197 2.899339 GGCTCGAATCCAGCTGGC 60.899 66.667 28.91 13.99 37.05 4.85
4356 17231 0.679505 TAGCAGCAGTCGTTCCTTGT 59.320 50.000 0.00 0.00 0.00 3.16
4489 17416 4.639171 TGCTGCGTCTCGTGCGAA 62.639 61.111 0.00 0.00 33.23 4.70
4490 17417 4.122515 GCTGCGTCTCGTGCGAAC 62.123 66.667 5.69 0.00 34.24 3.95
4491 17418 2.729491 CTGCGTCTCGTGCGAACA 60.729 61.111 0.00 0.00 34.24 3.18
4492 17419 2.710971 CTGCGTCTCGTGCGAACAG 61.711 63.158 0.00 0.00 34.24 3.16
4493 17420 2.729862 GCGTCTCGTGCGAACAGT 60.730 61.111 0.00 0.00 0.00 3.55
4494 17421 2.988549 GCGTCTCGTGCGAACAGTG 61.989 63.158 0.00 0.00 0.00 3.66
4507 17434 2.662791 CGAACAGTGGCATTCAGAAACG 60.663 50.000 0.00 0.00 0.00 3.60
4513 17440 0.454452 GGCATTCAGAAACGAACCGC 60.454 55.000 0.00 0.00 0.00 5.68
4517 17444 1.216941 TTCAGAAACGAACCGCGGAC 61.217 55.000 35.90 23.34 46.49 4.79
4542 17469 3.306379 GCCTGGGCGGTAGTAGTT 58.694 61.111 0.00 0.00 34.25 2.24
4543 17470 1.143401 GCCTGGGCGGTAGTAGTTC 59.857 63.158 0.00 0.00 34.25 3.01
4544 17471 1.610554 GCCTGGGCGGTAGTAGTTCA 61.611 60.000 0.00 0.00 34.25 3.18
4545 17472 1.120530 CCTGGGCGGTAGTAGTTCAT 58.879 55.000 0.00 0.00 0.00 2.57
4546 17473 1.068741 CCTGGGCGGTAGTAGTTCATC 59.931 57.143 0.00 0.00 0.00 2.92
4547 17474 2.032620 CTGGGCGGTAGTAGTTCATCT 58.967 52.381 0.00 0.00 0.00 2.90
4548 17475 2.431057 CTGGGCGGTAGTAGTTCATCTT 59.569 50.000 0.00 0.00 0.00 2.40
4549 17476 2.429610 TGGGCGGTAGTAGTTCATCTTC 59.570 50.000 0.00 0.00 0.00 2.87
4550 17477 2.694109 GGGCGGTAGTAGTTCATCTTCT 59.306 50.000 0.00 0.00 0.00 2.85
4551 17478 3.132467 GGGCGGTAGTAGTTCATCTTCTT 59.868 47.826 0.00 0.00 0.00 2.52
4552 17479 4.382793 GGGCGGTAGTAGTTCATCTTCTTT 60.383 45.833 0.00 0.00 0.00 2.52
4553 17480 4.804665 GGCGGTAGTAGTTCATCTTCTTTC 59.195 45.833 0.00 0.00 0.00 2.62
4554 17481 5.408356 GCGGTAGTAGTTCATCTTCTTTCA 58.592 41.667 0.00 0.00 0.00 2.69
4555 17482 5.288952 GCGGTAGTAGTTCATCTTCTTTCAC 59.711 44.000 0.00 0.00 0.00 3.18
4556 17483 5.805994 CGGTAGTAGTTCATCTTCTTTCACC 59.194 44.000 0.00 0.00 0.00 4.02
4557 17484 6.571731 CGGTAGTAGTTCATCTTCTTTCACCA 60.572 42.308 0.00 0.00 0.00 4.17
4558 17485 7.331791 GGTAGTAGTTCATCTTCTTTCACCAT 58.668 38.462 0.00 0.00 0.00 3.55
4559 17486 7.824779 GGTAGTAGTTCATCTTCTTTCACCATT 59.175 37.037 0.00 0.00 0.00 3.16
4560 17487 9.871238 GTAGTAGTTCATCTTCTTTCACCATTA 57.129 33.333 0.00 0.00 0.00 1.90
4562 17489 9.793259 AGTAGTTCATCTTCTTTCACCATTAAA 57.207 29.630 0.00 0.00 0.00 1.52
4578 17505 8.250332 TCACCATTAAATTATCCAAACTGAAGC 58.750 33.333 0.00 0.00 0.00 3.86
4579 17506 8.034215 CACCATTAAATTATCCAAACTGAAGCA 58.966 33.333 0.00 0.00 0.00 3.91
4580 17507 8.592809 ACCATTAAATTATCCAAACTGAAGCAA 58.407 29.630 0.00 0.00 0.00 3.91
4581 17508 8.872845 CCATTAAATTATCCAAACTGAAGCAAC 58.127 33.333 0.00 0.00 0.00 4.17
4582 17509 9.421806 CATTAAATTATCCAAACTGAAGCAACA 57.578 29.630 0.00 0.00 0.00 3.33
4583 17510 9.995003 ATTAAATTATCCAAACTGAAGCAACAA 57.005 25.926 0.00 0.00 0.00 2.83
4584 17511 9.823647 TTAAATTATCCAAACTGAAGCAACAAA 57.176 25.926 0.00 0.00 0.00 2.83
4585 17512 8.729805 AAATTATCCAAACTGAAGCAACAAAA 57.270 26.923 0.00 0.00 0.00 2.44
4586 17513 8.907222 AATTATCCAAACTGAAGCAACAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
4587 17514 7.712264 TTATCCAAACTGAAGCAACAAAATG 57.288 32.000 0.00 0.00 0.00 2.32
4588 17515 5.083533 TCCAAACTGAAGCAACAAAATGT 57.916 34.783 0.00 0.00 0.00 2.71
4589 17516 5.486526 TCCAAACTGAAGCAACAAAATGTT 58.513 33.333 0.00 0.00 42.08 2.71
4590 17517 5.936956 TCCAAACTGAAGCAACAAAATGTTT 59.063 32.000 0.00 0.00 38.77 2.83
4591 17518 6.429385 TCCAAACTGAAGCAACAAAATGTTTT 59.571 30.769 0.00 0.00 38.77 2.43
4592 17519 7.040823 TCCAAACTGAAGCAACAAAATGTTTTT 60.041 29.630 0.00 0.00 38.77 1.94
4618 17545 9.798994 TTTTAAGATAAGAACGGACTCTACATC 57.201 33.333 0.00 0.00 0.00 3.06
4619 17546 5.676532 AGATAAGAACGGACTCTACATCG 57.323 43.478 0.00 0.00 0.00 3.84
4620 17547 5.366460 AGATAAGAACGGACTCTACATCGA 58.634 41.667 0.00 0.00 0.00 3.59
4621 17548 5.998981 AGATAAGAACGGACTCTACATCGAT 59.001 40.000 0.00 0.00 0.00 3.59
4622 17549 4.985538 AAGAACGGACTCTACATCGATT 57.014 40.909 0.00 0.00 0.00 3.34
4623 17550 7.660617 AGATAAGAACGGACTCTACATCGATTA 59.339 37.037 0.00 0.00 0.00 1.75
4624 17551 6.446781 AAGAACGGACTCTACATCGATTAA 57.553 37.500 0.00 0.00 0.00 1.40
4625 17552 6.636562 AGAACGGACTCTACATCGATTAAT 57.363 37.500 0.00 0.00 0.00 1.40
4626 17553 7.741027 AGAACGGACTCTACATCGATTAATA 57.259 36.000 0.00 0.00 0.00 0.98
4627 17554 8.162878 AGAACGGACTCTACATCGATTAATAA 57.837 34.615 0.00 0.00 0.00 1.40
4628 17555 8.794553 AGAACGGACTCTACATCGATTAATAAT 58.205 33.333 0.00 0.00 0.00 1.28
4629 17556 8.744008 AACGGACTCTACATCGATTAATAATG 57.256 34.615 0.00 8.18 0.00 1.90
4630 17557 7.313646 ACGGACTCTACATCGATTAATAATGG 58.686 38.462 0.00 0.00 0.00 3.16
4631 17558 6.752351 CGGACTCTACATCGATTAATAATGGG 59.248 42.308 0.00 7.00 0.00 4.00
4632 17559 7.362660 CGGACTCTACATCGATTAATAATGGGA 60.363 40.741 0.00 9.69 0.00 4.37
4633 17560 7.976734 GGACTCTACATCGATTAATAATGGGAG 59.023 40.741 19.67 19.67 34.06 4.30
4634 17561 7.841956 ACTCTACATCGATTAATAATGGGAGG 58.158 38.462 22.07 13.34 33.12 4.30
4635 17562 6.640518 TCTACATCGATTAATAATGGGAGGC 58.359 40.000 0.00 0.00 0.00 4.70
4636 17563 5.241403 ACATCGATTAATAATGGGAGGCA 57.759 39.130 0.00 0.00 0.00 4.75
4637 17564 5.003804 ACATCGATTAATAATGGGAGGCAC 58.996 41.667 0.00 0.00 0.00 5.01
4638 17565 4.698201 TCGATTAATAATGGGAGGCACA 57.302 40.909 0.00 0.00 0.00 4.57
4639 17566 5.042463 TCGATTAATAATGGGAGGCACAA 57.958 39.130 0.00 0.00 0.00 3.33
4640 17567 5.441500 TCGATTAATAATGGGAGGCACAAA 58.558 37.500 0.00 0.00 0.00 2.83
4641 17568 5.298276 TCGATTAATAATGGGAGGCACAAAC 59.702 40.000 0.00 0.00 0.00 2.93
4642 17569 5.067153 CGATTAATAATGGGAGGCACAAACA 59.933 40.000 0.00 0.00 0.00 2.83
4643 17570 6.239008 CGATTAATAATGGGAGGCACAAACAT 60.239 38.462 0.00 0.00 0.00 2.71
4644 17571 7.040755 CGATTAATAATGGGAGGCACAAACATA 60.041 37.037 0.00 0.00 0.00 2.29
4645 17572 5.852282 AATAATGGGAGGCACAAACATAC 57.148 39.130 0.00 0.00 0.00 2.39
4646 17573 2.897271 ATGGGAGGCACAAACATACA 57.103 45.000 0.00 0.00 0.00 2.29
4647 17574 2.666272 TGGGAGGCACAAACATACAA 57.334 45.000 0.00 0.00 0.00 2.41
4648 17575 3.168035 TGGGAGGCACAAACATACAAT 57.832 42.857 0.00 0.00 0.00 2.71
4649 17576 2.824936 TGGGAGGCACAAACATACAATG 59.175 45.455 0.00 0.00 0.00 2.82
4651 17578 4.013728 GGGAGGCACAAACATACAATGTA 58.986 43.478 0.00 0.00 44.07 2.29
4652 17579 4.142469 GGGAGGCACAAACATACAATGTAC 60.142 45.833 0.00 0.00 44.07 2.90
4653 17580 4.457603 GGAGGCACAAACATACAATGTACA 59.542 41.667 0.00 0.00 44.07 2.90
4654 17581 5.391950 GGAGGCACAAACATACAATGTACAG 60.392 44.000 0.33 0.00 44.07 2.74
4655 17582 5.070001 AGGCACAAACATACAATGTACAGT 58.930 37.500 0.33 0.00 44.07 3.55
4656 17583 6.234920 AGGCACAAACATACAATGTACAGTA 58.765 36.000 0.33 0.00 44.07 2.74
4657 17584 6.371548 AGGCACAAACATACAATGTACAGTAG 59.628 38.462 0.33 0.00 44.07 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.957362 GCAAGCAAGCAAGTCTCCTT 59.043 50.000 0.00 0.00 0.00 3.36
51 53 1.227497 GAGGATCCAGCTCCGCAAG 60.227 63.158 15.82 0.00 40.46 4.01
54 56 0.032815 GTTAGAGGATCCAGCTCCGC 59.967 60.000 15.82 1.59 40.46 5.54
55 57 1.403814 TGTTAGAGGATCCAGCTCCG 58.596 55.000 15.82 0.00 40.46 4.63
56 58 3.389329 TCAATGTTAGAGGATCCAGCTCC 59.611 47.826 15.82 6.00 33.66 4.70
57 59 4.343526 TCTCAATGTTAGAGGATCCAGCTC 59.656 45.833 15.82 2.55 33.66 4.09
58 60 4.293494 TCTCAATGTTAGAGGATCCAGCT 58.707 43.478 15.82 13.21 33.66 4.24
59 61 4.679373 TCTCAATGTTAGAGGATCCAGC 57.321 45.455 15.82 5.44 33.66 4.85
60 62 6.232581 ACTTCTCAATGTTAGAGGATCCAG 57.767 41.667 15.82 0.00 33.66 3.86
61 63 7.733773 TTACTTCTCAATGTTAGAGGATCCA 57.266 36.000 15.82 0.00 33.66 3.41
62 64 9.620259 ATTTTACTTCTCAATGTTAGAGGATCC 57.380 33.333 2.48 2.48 33.66 3.36
65 67 9.436957 GTGATTTTACTTCTCAATGTTAGAGGA 57.563 33.333 0.00 0.00 33.92 3.71
66 68 8.383619 CGTGATTTTACTTCTCAATGTTAGAGG 58.616 37.037 0.00 0.00 33.92 3.69
67 69 8.383619 CCGTGATTTTACTTCTCAATGTTAGAG 58.616 37.037 0.00 0.00 34.42 2.43
68 70 7.876068 ACCGTGATTTTACTTCTCAATGTTAGA 59.124 33.333 0.00 0.00 0.00 2.10
69 71 7.957484 CACCGTGATTTTACTTCTCAATGTTAG 59.043 37.037 0.00 0.00 0.00 2.34
70 72 7.658167 TCACCGTGATTTTACTTCTCAATGTTA 59.342 33.333 0.00 0.00 0.00 2.41
71 73 6.485313 TCACCGTGATTTTACTTCTCAATGTT 59.515 34.615 0.00 0.00 0.00 2.71
72 74 5.995282 TCACCGTGATTTTACTTCTCAATGT 59.005 36.000 0.00 0.00 0.00 2.71
73 75 6.480524 TCACCGTGATTTTACTTCTCAATG 57.519 37.500 0.00 0.00 0.00 2.82
74 76 7.822334 TGTATCACCGTGATTTTACTTCTCAAT 59.178 33.333 18.97 0.00 38.26 2.57
75 77 7.156000 TGTATCACCGTGATTTTACTTCTCAA 58.844 34.615 18.97 0.00 38.26 3.02
76 78 6.693466 TGTATCACCGTGATTTTACTTCTCA 58.307 36.000 18.97 0.00 38.26 3.27
77 79 6.812160 ACTGTATCACCGTGATTTTACTTCTC 59.188 38.462 18.97 1.45 38.26 2.87
78 80 6.590292 CACTGTATCACCGTGATTTTACTTCT 59.410 38.462 18.97 0.00 38.26 2.85
79 81 6.367969 ACACTGTATCACCGTGATTTTACTTC 59.632 38.462 18.97 3.47 38.26 3.01
80 82 6.228258 ACACTGTATCACCGTGATTTTACTT 58.772 36.000 18.97 0.00 38.26 2.24
81 83 5.790593 ACACTGTATCACCGTGATTTTACT 58.209 37.500 18.97 0.00 38.26 2.24
82 84 5.636121 TGACACTGTATCACCGTGATTTTAC 59.364 40.000 18.97 11.81 38.26 2.01
83 85 5.785243 TGACACTGTATCACCGTGATTTTA 58.215 37.500 18.97 5.76 38.26 1.52
84 86 4.637276 TGACACTGTATCACCGTGATTTT 58.363 39.130 18.97 0.00 38.26 1.82
85 87 4.245660 CTGACACTGTATCACCGTGATTT 58.754 43.478 18.97 0.00 38.26 2.17
86 88 3.849911 CTGACACTGTATCACCGTGATT 58.150 45.455 18.97 0.01 38.26 2.57
87 89 2.417379 GCTGACACTGTATCACCGTGAT 60.417 50.000 17.92 17.92 40.72 3.06
88 90 1.067846 GCTGACACTGTATCACCGTGA 60.068 52.381 3.10 3.10 35.69 4.35
89 91 1.350193 GCTGACACTGTATCACCGTG 58.650 55.000 0.00 0.00 38.93 4.94
90 92 0.246635 GGCTGACACTGTATCACCGT 59.753 55.000 0.00 0.00 0.00 4.83
91 93 0.532573 AGGCTGACACTGTATCACCG 59.467 55.000 0.00 0.00 0.00 4.94
92 94 2.761208 ACTAGGCTGACACTGTATCACC 59.239 50.000 0.00 0.00 0.00 4.02
93 95 3.775202 CACTAGGCTGACACTGTATCAC 58.225 50.000 0.00 0.00 0.00 3.06
94 96 2.166459 GCACTAGGCTGACACTGTATCA 59.834 50.000 0.00 0.00 40.25 2.15
95 97 2.166459 TGCACTAGGCTGACACTGTATC 59.834 50.000 0.00 0.00 45.15 2.24
96 98 2.179427 TGCACTAGGCTGACACTGTAT 58.821 47.619 0.00 0.00 45.15 2.29
97 99 1.627864 TGCACTAGGCTGACACTGTA 58.372 50.000 0.00 0.00 45.15 2.74
98 100 0.758734 TTGCACTAGGCTGACACTGT 59.241 50.000 0.00 0.00 45.15 3.55
99 101 1.882912 TTTGCACTAGGCTGACACTG 58.117 50.000 0.00 0.00 45.15 3.66
100 102 2.638480 TTTTGCACTAGGCTGACACT 57.362 45.000 0.00 0.00 45.15 3.55
101 103 2.095059 CCATTTTGCACTAGGCTGACAC 60.095 50.000 0.00 0.00 45.15 3.67
102 104 2.161855 CCATTTTGCACTAGGCTGACA 58.838 47.619 0.00 0.00 45.15 3.58
103 105 2.421424 CTCCATTTTGCACTAGGCTGAC 59.579 50.000 0.00 0.00 45.15 3.51
104 106 2.305635 TCTCCATTTTGCACTAGGCTGA 59.694 45.455 0.00 0.00 45.15 4.26
105 107 2.715046 TCTCCATTTTGCACTAGGCTG 58.285 47.619 0.00 0.00 45.15 4.85
106 108 3.350833 CTTCTCCATTTTGCACTAGGCT 58.649 45.455 0.00 0.00 45.15 4.58
107 109 2.424956 CCTTCTCCATTTTGCACTAGGC 59.575 50.000 0.00 0.00 45.13 3.93
108 110 3.019564 CCCTTCTCCATTTTGCACTAGG 58.980 50.000 0.00 0.00 0.00 3.02
109 111 3.955471 TCCCTTCTCCATTTTGCACTAG 58.045 45.455 0.00 0.00 0.00 2.57
110 112 4.202567 ACTTCCCTTCTCCATTTTGCACTA 60.203 41.667 0.00 0.00 0.00 2.74
111 113 2.978156 TCCCTTCTCCATTTTGCACT 57.022 45.000 0.00 0.00 0.00 4.40
112 114 2.893489 ACTTCCCTTCTCCATTTTGCAC 59.107 45.455 0.00 0.00 0.00 4.57
113 115 3.243359 ACTTCCCTTCTCCATTTTGCA 57.757 42.857 0.00 0.00 0.00 4.08
114 116 5.010282 TCTAACTTCCCTTCTCCATTTTGC 58.990 41.667 0.00 0.00 0.00 3.68
115 117 6.372937 GTCTCTAACTTCCCTTCTCCATTTTG 59.627 42.308 0.00 0.00 0.00 2.44
116 118 6.273495 AGTCTCTAACTTCCCTTCTCCATTTT 59.727 38.462 0.00 0.00 33.03 1.82
117 119 5.788014 AGTCTCTAACTTCCCTTCTCCATTT 59.212 40.000 0.00 0.00 33.03 2.32
118 120 5.188751 CAGTCTCTAACTTCCCTTCTCCATT 59.811 44.000 0.00 0.00 35.45 3.16
119 121 4.714308 CAGTCTCTAACTTCCCTTCTCCAT 59.286 45.833 0.00 0.00 35.45 3.41
120 122 4.090090 CAGTCTCTAACTTCCCTTCTCCA 58.910 47.826 0.00 0.00 35.45 3.86
121 123 4.090819 ACAGTCTCTAACTTCCCTTCTCC 58.909 47.826 0.00 0.00 35.45 3.71
122 124 5.731957 AACAGTCTCTAACTTCCCTTCTC 57.268 43.478 0.00 0.00 35.45 2.87
123 125 6.316513 ACTAACAGTCTCTAACTTCCCTTCT 58.683 40.000 0.00 0.00 35.45 2.85
124 126 6.593268 ACTAACAGTCTCTAACTTCCCTTC 57.407 41.667 0.00 0.00 35.45 3.46
125 127 6.664384 CCTACTAACAGTCTCTAACTTCCCTT 59.336 42.308 0.00 0.00 35.45 3.95
126 128 6.189133 CCTACTAACAGTCTCTAACTTCCCT 58.811 44.000 0.00 0.00 35.45 4.20
127 129 5.951148 ACCTACTAACAGTCTCTAACTTCCC 59.049 44.000 0.00 0.00 35.45 3.97
128 130 7.828717 ACTACCTACTAACAGTCTCTAACTTCC 59.171 40.741 0.00 0.00 35.45 3.46
129 131 8.791327 ACTACCTACTAACAGTCTCTAACTTC 57.209 38.462 0.00 0.00 35.45 3.01
131 133 9.889128 CTAACTACCTACTAACAGTCTCTAACT 57.111 37.037 0.00 0.00 39.44 2.24
132 134 9.665719 ACTAACTACCTACTAACAGTCTCTAAC 57.334 37.037 0.00 0.00 0.00 2.34
135 137 9.265862 TCTACTAACTACCTACTAACAGTCTCT 57.734 37.037 0.00 0.00 0.00 3.10
251 253 9.341078 TGCAAATTGATGATATACTGTGTACAT 57.659 29.630 0.00 0.00 0.00 2.29
252 254 8.729805 TGCAAATTGATGATATACTGTGTACA 57.270 30.769 0.00 0.00 0.00 2.90
308 310 9.695155 CCCTAACTTTCCTTCTTTTTATCCATA 57.305 33.333 0.00 0.00 0.00 2.74
309 311 8.177456 ACCCTAACTTTCCTTCTTTTTATCCAT 58.823 33.333 0.00 0.00 0.00 3.41
310 312 7.532199 ACCCTAACTTTCCTTCTTTTTATCCA 58.468 34.615 0.00 0.00 0.00 3.41
311 313 9.696572 ATACCCTAACTTTCCTTCTTTTTATCC 57.303 33.333 0.00 0.00 0.00 2.59
314 316 9.871175 ACAATACCCTAACTTTCCTTCTTTTTA 57.129 29.630 0.00 0.00 0.00 1.52
315 317 8.777578 ACAATACCCTAACTTTCCTTCTTTTT 57.222 30.769 0.00 0.00 0.00 1.94
316 318 9.516546 CTACAATACCCTAACTTTCCTTCTTTT 57.483 33.333 0.00 0.00 0.00 2.27
317 319 7.610692 GCTACAATACCCTAACTTTCCTTCTTT 59.389 37.037 0.00 0.00 0.00 2.52
318 320 7.037514 AGCTACAATACCCTAACTTTCCTTCTT 60.038 37.037 0.00 0.00 0.00 2.52
319 321 6.444171 AGCTACAATACCCTAACTTTCCTTCT 59.556 38.462 0.00 0.00 0.00 2.85
320 322 6.651086 AGCTACAATACCCTAACTTTCCTTC 58.349 40.000 0.00 0.00 0.00 3.46
321 323 6.638021 AGCTACAATACCCTAACTTTCCTT 57.362 37.500 0.00 0.00 0.00 3.36
322 324 6.444171 AGAAGCTACAATACCCTAACTTTCCT 59.556 38.462 0.00 0.00 0.00 3.36
323 325 6.651086 AGAAGCTACAATACCCTAACTTTCC 58.349 40.000 0.00 0.00 0.00 3.13
324 326 7.557724 AGAGAAGCTACAATACCCTAACTTTC 58.442 38.462 0.00 0.00 0.00 2.62
325 327 7.497773 AGAGAAGCTACAATACCCTAACTTT 57.502 36.000 0.00 0.00 0.00 2.66
326 328 8.605325 TTAGAGAAGCTACAATACCCTAACTT 57.395 34.615 0.00 0.00 0.00 2.66
327 329 8.785184 ATTAGAGAAGCTACAATACCCTAACT 57.215 34.615 0.00 0.00 0.00 2.24
328 330 9.833917 AAATTAGAGAAGCTACAATACCCTAAC 57.166 33.333 0.00 0.00 0.00 2.34
331 333 9.397280 GAAAAATTAGAGAAGCTACAATACCCT 57.603 33.333 0.00 0.00 0.00 4.34
332 334 9.397280 AGAAAAATTAGAGAAGCTACAATACCC 57.603 33.333 0.00 0.00 0.00 3.69
352 354 6.883135 AGCGGAACCCGATCGTAAGAAAAA 62.883 45.833 15.09 0.00 44.45 1.94
353 355 5.479893 AGCGGAACCCGATCGTAAGAAAA 62.480 47.826 15.09 0.00 44.45 2.29
354 356 4.040754 AGCGGAACCCGATCGTAAGAAA 62.041 50.000 15.09 0.00 44.45 2.52
355 357 2.560704 AGCGGAACCCGATCGTAAGAA 61.561 52.381 15.09 0.00 44.45 2.52
356 358 1.033746 AGCGGAACCCGATCGTAAGA 61.034 55.000 15.09 0.00 44.45 2.10
357 359 0.179119 AAGCGGAACCCGATCGTAAG 60.179 55.000 15.09 4.92 44.45 2.34
358 360 0.458889 CAAGCGGAACCCGATCGTAA 60.459 55.000 15.09 0.00 44.45 3.18
359 361 1.140161 CAAGCGGAACCCGATCGTA 59.860 57.895 15.09 0.00 44.45 3.43
360 362 2.125673 CAAGCGGAACCCGATCGT 60.126 61.111 15.09 0.00 44.45 3.73
361 363 1.740296 AACAAGCGGAACCCGATCG 60.740 57.895 8.51 8.51 44.45 3.69
362 364 1.794222 CAACAAGCGGAACCCGATC 59.206 57.895 9.84 0.00 44.45 3.69
406 408 1.473257 CCGATGTCCATGTGAACGGAT 60.473 52.381 0.00 0.00 38.11 4.18
505 508 1.082679 CGCGAGTCGTAGTCTGGAGA 61.083 60.000 15.08 0.00 0.00 3.71
514 517 1.585267 TTAACCTGGCGCGAGTCGTA 61.585 55.000 18.51 4.44 39.79 3.43
584 592 2.916640 TGCAGAATGGCGAATGTCATA 58.083 42.857 0.00 0.00 40.23 2.15
812 821 5.665812 TGAGGGAGCACCAGTATTTTACTAT 59.334 40.000 1.58 0.00 43.89 2.12
833 842 2.621998 CCCTGCATATTCAAAGCCTGAG 59.378 50.000 0.00 0.00 34.81 3.35
1326 1465 0.749454 GAATCATGAAGCCCCGCAGT 60.749 55.000 0.00 0.00 0.00 4.40
1388 1527 2.119611 TGGAGCTCTTGTCCCGGA 59.880 61.111 14.64 0.00 32.49 5.14
1407 1546 1.443872 AAGCACCGCGAAGTAGACG 60.444 57.895 8.23 0.00 0.00 4.18
1425 1564 2.847234 AGGAAGACGGTGGCCACA 60.847 61.111 35.78 0.00 0.00 4.17
1432 1571 2.015587 GACGATGTAGAGGAAGACGGT 58.984 52.381 0.00 0.00 0.00 4.83
1472 1611 1.968540 GAGTGCTTGCCTGACCACC 60.969 63.158 0.00 0.00 0.00 4.61
1477 1616 2.159819 GAGTCGGAGTGCTTGCCTGA 62.160 60.000 0.00 0.00 0.00 3.86
1478 1617 1.739562 GAGTCGGAGTGCTTGCCTG 60.740 63.158 0.00 0.00 0.00 4.85
1479 1618 1.548357 ATGAGTCGGAGTGCTTGCCT 61.548 55.000 0.00 0.00 0.00 4.75
1507 1649 1.161563 TCGTTCTGGGACAAAACGCC 61.162 55.000 3.22 0.00 38.70 5.68
1512 1654 1.542547 GCCTTCTCGTTCTGGGACAAA 60.543 52.381 0.00 0.00 38.70 2.83
1513 1655 0.034896 GCCTTCTCGTTCTGGGACAA 59.965 55.000 0.00 0.00 38.70 3.18
1514 1656 1.671742 GCCTTCTCGTTCTGGGACA 59.328 57.895 0.00 0.00 0.00 4.02
1529 1671 1.074566 CTTTCAGTTCCTTGAGGGCCT 59.925 52.381 5.25 5.25 35.41 5.19
1718 1860 3.183754 GTGTTGCAGTGTAAAAACACCC 58.816 45.455 16.06 0.00 44.15 4.61
1730 1872 4.849310 ACGCCGTGGTGTTGCAGT 62.849 61.111 0.00 0.00 34.99 4.40
1885 2036 2.047560 GGCGGTGGTACCAGTGTC 60.048 66.667 16.93 8.65 38.47 3.67
1887 2038 0.179084 CTATGGCGGTGGTACCAGTG 60.179 60.000 16.93 12.02 39.88 3.66
1904 2055 3.390521 CGGCCAGGCTGACCACTA 61.391 66.667 20.27 0.00 37.02 2.74
1925 2076 2.361483 ATGCCAATGCCAGCACGA 60.361 55.556 0.00 0.00 42.84 4.35
1943 2094 2.202566 GTAAAGTGCGGAGTAGGATGC 58.797 52.381 0.00 0.00 0.00 3.91
1945 2096 1.407979 CGGTAAAGTGCGGAGTAGGAT 59.592 52.381 0.00 0.00 0.00 3.24
1954 2105 1.659098 GGATTCTGACGGTAAAGTGCG 59.341 52.381 0.00 0.00 0.00 5.34
1955 2106 2.973945 AGGATTCTGACGGTAAAGTGC 58.026 47.619 0.00 0.00 0.00 4.40
1962 2113 2.368875 ACAAGACAAGGATTCTGACGGT 59.631 45.455 0.00 0.00 0.00 4.83
1967 2118 4.823989 AGGAACAACAAGACAAGGATTCTG 59.176 41.667 0.00 0.00 0.00 3.02
1968 2119 4.823989 CAGGAACAACAAGACAAGGATTCT 59.176 41.667 0.00 0.00 0.00 2.40
1969 2120 4.580580 ACAGGAACAACAAGACAAGGATTC 59.419 41.667 0.00 0.00 0.00 2.52
1973 2124 4.703897 TCTACAGGAACAACAAGACAAGG 58.296 43.478 0.00 0.00 0.00 3.61
1990 2141 5.122519 TGCATCAGTTTGTCTTGTTCTACA 58.877 37.500 0.00 0.00 0.00 2.74
1994 2145 4.925068 AGTTGCATCAGTTTGTCTTGTTC 58.075 39.130 0.00 0.00 0.00 3.18
1996 2147 3.947196 TGAGTTGCATCAGTTTGTCTTGT 59.053 39.130 0.00 0.00 0.00 3.16
2000 2151 2.291465 TGCTGAGTTGCATCAGTTTGTC 59.709 45.455 16.63 2.96 46.93 3.18
2042 2193 3.926020 AGGGGAAAGGAAGAAGAGGATTT 59.074 43.478 0.00 0.00 0.00 2.17
2518 9826 4.040047 TGGATCACCACATAGACCAAGAT 58.960 43.478 0.00 0.00 41.77 2.40
2625 9939 0.741326 CCAAGATCGCGAAGAGGAGA 59.259 55.000 15.24 0.00 0.00 3.71
2895 10212 4.142469 GCGTAGGCTACCATCAAACAAAAT 60.142 41.667 18.58 0.00 35.83 1.82
2946 10263 2.493713 ACGCGAAGATGTAGATGGAC 57.506 50.000 15.93 0.00 0.00 4.02
3110 10586 4.262678 CCTTCTTCCCTTCTTCTTCGTCTT 60.263 45.833 0.00 0.00 0.00 3.01
3111 10587 3.259625 CCTTCTTCCCTTCTTCTTCGTCT 59.740 47.826 0.00 0.00 0.00 4.18
3112 10588 3.258622 TCCTTCTTCCCTTCTTCTTCGTC 59.741 47.826 0.00 0.00 0.00 4.20
3113 10589 3.240302 TCCTTCTTCCCTTCTTCTTCGT 58.760 45.455 0.00 0.00 0.00 3.85
3114 10590 3.963428 TCCTTCTTCCCTTCTTCTTCG 57.037 47.619 0.00 0.00 0.00 3.79
3115 10591 5.491323 TCTTCCTTCTTCCCTTCTTCTTC 57.509 43.478 0.00 0.00 0.00 2.87
3116 10592 5.913946 TTCTTCCTTCTTCCCTTCTTCTT 57.086 39.130 0.00 0.00 0.00 2.52
3117 10593 5.913946 TTTCTTCCTTCTTCCCTTCTTCT 57.086 39.130 0.00 0.00 0.00 2.85
3118 10594 6.015856 CCTTTTTCTTCCTTCTTCCCTTCTTC 60.016 42.308 0.00 0.00 0.00 2.87
3119 10595 5.835819 CCTTTTTCTTCCTTCTTCCCTTCTT 59.164 40.000 0.00 0.00 0.00 2.52
3120 10596 5.389520 CCTTTTTCTTCCTTCTTCCCTTCT 58.610 41.667 0.00 0.00 0.00 2.85
3121 10597 4.524714 CCCTTTTTCTTCCTTCTTCCCTTC 59.475 45.833 0.00 0.00 0.00 3.46
3122 10598 4.170053 TCCCTTTTTCTTCCTTCTTCCCTT 59.830 41.667 0.00 0.00 0.00 3.95
3123 10599 3.727391 TCCCTTTTTCTTCCTTCTTCCCT 59.273 43.478 0.00 0.00 0.00 4.20
3124 10600 4.114015 TCCCTTTTTCTTCCTTCTTCCC 57.886 45.455 0.00 0.00 0.00 3.97
3125 10601 5.386060 TCTTCCCTTTTTCTTCCTTCTTCC 58.614 41.667 0.00 0.00 0.00 3.46
3126 10602 6.015856 CCTTCTTCCCTTTTTCTTCCTTCTTC 60.016 42.308 0.00 0.00 0.00 2.87
3127 10603 5.835819 CCTTCTTCCCTTTTTCTTCCTTCTT 59.164 40.000 0.00 0.00 0.00 2.52
3132 10608 5.877491 TCTACCTTCTTCCCTTTTTCTTCC 58.123 41.667 0.00 0.00 0.00 3.46
3139 10615 7.150447 TCTTTTCTTCTACCTTCTTCCCTTT 57.850 36.000 0.00 0.00 0.00 3.11
3622 11167 5.932883 GTCTCTCTTTGGATTTCTTACGGTT 59.067 40.000 0.00 0.00 0.00 4.44
3667 11212 2.087462 TAGCGGCGCTGCAGATATGT 62.087 55.000 41.59 21.76 40.10 2.29
3681 11290 4.505313 TTGCTCTCACATAGTATAGCGG 57.495 45.455 0.00 0.00 32.67 5.52
3714 11361 6.016777 CAGGATGAAATAAATAGGTCACAGCC 60.017 42.308 0.00 0.00 39.69 4.85
3794 11462 4.672587 AAAAGGAGGGAAGCTTTTTGTC 57.327 40.909 0.00 0.00 0.00 3.18
3860 11557 2.857748 CAATGTAAGCATGCTCGACGTA 59.142 45.455 22.93 6.28 35.15 3.57
3863 11560 3.747099 AACAATGTAAGCATGCTCGAC 57.253 42.857 22.93 21.47 35.15 4.20
3968 11676 6.560253 ATGCTTCAAGTTCTTATGAAACGT 57.440 33.333 0.00 0.00 35.31 3.99
3972 11680 9.677567 GTAACAAATGCTTCAAGTTCTTATGAA 57.322 29.630 0.00 0.00 34.57 2.57
4005 13836 8.784043 GGATTATACCAAGTGACATATGTTTCC 58.216 37.037 10.30 0.00 0.00 3.13
4053 16885 7.060421 TGGATTCAAAGGTATGTTTCCTATCC 58.940 38.462 0.00 0.00 37.17 2.59
4056 16888 6.889722 CCTTGGATTCAAAGGTATGTTTCCTA 59.110 38.462 11.25 0.00 34.56 2.94
4071 16903 0.852842 CCCATAGCCCCTTGGATTCA 59.147 55.000 0.00 0.00 34.81 2.57
4074 16906 1.418908 CGTCCCATAGCCCCTTGGAT 61.419 60.000 0.00 0.00 34.81 3.41
4099 16935 0.468214 CTAGGGAGGGAGATCACGCA 60.468 60.000 9.73 0.00 0.00 5.24
4152 16988 1.376086 CCATCTGCATGCGGGGATA 59.624 57.895 25.97 7.42 0.00 2.59
4218 17073 2.250031 CTCCATCCTCTGATGCTAGCT 58.750 52.381 17.23 0.83 45.86 3.32
4242 17103 0.183731 GGAATCCTCTCCGGCCAAAT 59.816 55.000 2.24 0.00 0.00 2.32
4288 17149 4.299547 ACGCCTCGAGCAACTGCA 62.300 61.111 6.99 0.00 45.16 4.41
4335 17197 1.728971 CAAGGAACGACTGCTGCTAAG 59.271 52.381 0.00 0.00 0.00 2.18
4349 17224 3.777106 AGTGCAGAAGATCACAAGGAA 57.223 42.857 0.00 0.00 35.76 3.36
4356 17231 1.839354 TGCCCATAGTGCAGAAGATCA 59.161 47.619 0.00 0.00 34.05 2.92
4379 17289 4.641645 CGACCTGCACCTGGGCAA 62.642 66.667 10.39 0.00 44.40 4.52
4486 17413 2.662791 CGTTTCTGAATGCCACTGTTCG 60.663 50.000 0.00 0.00 0.00 3.95
4487 17414 2.548057 TCGTTTCTGAATGCCACTGTTC 59.452 45.455 0.00 0.00 0.00 3.18
4488 17415 2.571212 TCGTTTCTGAATGCCACTGTT 58.429 42.857 0.00 0.00 0.00 3.16
4489 17416 2.254546 TCGTTTCTGAATGCCACTGT 57.745 45.000 0.00 0.00 0.00 3.55
4490 17417 2.350772 GGTTCGTTTCTGAATGCCACTG 60.351 50.000 0.00 0.00 0.00 3.66
4491 17418 1.880027 GGTTCGTTTCTGAATGCCACT 59.120 47.619 0.00 0.00 0.00 4.00
4492 17419 1.399727 CGGTTCGTTTCTGAATGCCAC 60.400 52.381 0.00 0.00 0.00 5.01
4493 17420 0.871722 CGGTTCGTTTCTGAATGCCA 59.128 50.000 0.00 0.00 0.00 4.92
4494 17421 0.454452 GCGGTTCGTTTCTGAATGCC 60.454 55.000 0.00 0.00 0.00 4.40
4525 17452 1.143401 GAACTACTACCGCCCAGGC 59.857 63.158 0.00 0.00 46.52 4.85
4552 17479 8.250332 GCTTCAGTTTGGATAATTTAATGGTGA 58.750 33.333 0.00 0.00 0.00 4.02
4553 17480 8.034215 TGCTTCAGTTTGGATAATTTAATGGTG 58.966 33.333 0.00 0.00 0.00 4.17
4554 17481 8.133024 TGCTTCAGTTTGGATAATTTAATGGT 57.867 30.769 0.00 0.00 0.00 3.55
4555 17482 8.872845 GTTGCTTCAGTTTGGATAATTTAATGG 58.127 33.333 0.00 0.00 0.00 3.16
4556 17483 9.421806 TGTTGCTTCAGTTTGGATAATTTAATG 57.578 29.630 0.00 0.00 0.00 1.90
4557 17484 9.995003 TTGTTGCTTCAGTTTGGATAATTTAAT 57.005 25.926 0.00 0.00 0.00 1.40
4558 17485 9.823647 TTTGTTGCTTCAGTTTGGATAATTTAA 57.176 25.926 0.00 0.00 0.00 1.52
4559 17486 9.823647 TTTTGTTGCTTCAGTTTGGATAATTTA 57.176 25.926 0.00 0.00 0.00 1.40
4560 17487 8.729805 TTTTGTTGCTTCAGTTTGGATAATTT 57.270 26.923 0.00 0.00 0.00 1.82
4561 17488 8.776470 CATTTTGTTGCTTCAGTTTGGATAATT 58.224 29.630 0.00 0.00 0.00 1.40
4562 17489 7.933033 ACATTTTGTTGCTTCAGTTTGGATAAT 59.067 29.630 0.00 0.00 0.00 1.28
4563 17490 7.271511 ACATTTTGTTGCTTCAGTTTGGATAA 58.728 30.769 0.00 0.00 0.00 1.75
4564 17491 6.815089 ACATTTTGTTGCTTCAGTTTGGATA 58.185 32.000 0.00 0.00 0.00 2.59
4565 17492 5.673514 ACATTTTGTTGCTTCAGTTTGGAT 58.326 33.333 0.00 0.00 0.00 3.41
4566 17493 5.083533 ACATTTTGTTGCTTCAGTTTGGA 57.916 34.783 0.00 0.00 0.00 3.53
4567 17494 5.799681 AACATTTTGTTGCTTCAGTTTGG 57.200 34.783 0.00 0.00 39.45 3.28
4592 17519 9.798994 GATGTAGAGTCCGTTCTTATCTTAAAA 57.201 33.333 0.00 0.00 0.00 1.52
4593 17520 8.127327 CGATGTAGAGTCCGTTCTTATCTTAAA 58.873 37.037 0.00 0.00 0.00 1.52
4594 17521 7.496920 TCGATGTAGAGTCCGTTCTTATCTTAA 59.503 37.037 0.00 0.00 0.00 1.85
4595 17522 6.988580 TCGATGTAGAGTCCGTTCTTATCTTA 59.011 38.462 0.00 0.00 0.00 2.10
4596 17523 5.821470 TCGATGTAGAGTCCGTTCTTATCTT 59.179 40.000 0.00 0.00 0.00 2.40
4597 17524 5.366460 TCGATGTAGAGTCCGTTCTTATCT 58.634 41.667 0.00 0.00 0.00 1.98
4598 17525 5.670149 TCGATGTAGAGTCCGTTCTTATC 57.330 43.478 0.00 0.00 0.00 1.75
4599 17526 6.636562 AATCGATGTAGAGTCCGTTCTTAT 57.363 37.500 0.00 0.00 0.00 1.73
4600 17527 7.558161 TTAATCGATGTAGAGTCCGTTCTTA 57.442 36.000 0.00 0.00 0.00 2.10
4601 17528 4.985538 AATCGATGTAGAGTCCGTTCTT 57.014 40.909 0.00 0.00 0.00 2.52
4602 17529 6.636562 ATTAATCGATGTAGAGTCCGTTCT 57.363 37.500 0.00 0.00 0.00 3.01
4603 17530 8.851416 CATTATTAATCGATGTAGAGTCCGTTC 58.149 37.037 0.00 0.00 0.00 3.95
4604 17531 7.813148 CCATTATTAATCGATGTAGAGTCCGTT 59.187 37.037 0.00 0.00 0.00 4.44
4605 17532 7.313646 CCATTATTAATCGATGTAGAGTCCGT 58.686 38.462 0.00 0.00 0.00 4.69
4606 17533 6.752351 CCCATTATTAATCGATGTAGAGTCCG 59.248 42.308 0.00 0.00 0.00 4.79
4607 17534 7.837863 TCCCATTATTAATCGATGTAGAGTCC 58.162 38.462 0.00 0.00 0.00 3.85
4608 17535 7.976734 CCTCCCATTATTAATCGATGTAGAGTC 59.023 40.741 0.00 0.00 0.00 3.36
4609 17536 7.579723 GCCTCCCATTATTAATCGATGTAGAGT 60.580 40.741 0.00 0.00 0.00 3.24
4610 17537 6.758886 GCCTCCCATTATTAATCGATGTAGAG 59.241 42.308 0.00 14.49 0.00 2.43
4611 17538 6.212589 TGCCTCCCATTATTAATCGATGTAGA 59.787 38.462 0.00 0.00 0.00 2.59
4612 17539 6.313905 GTGCCTCCCATTATTAATCGATGTAG 59.686 42.308 0.00 0.00 0.00 2.74
4613 17540 6.170506 GTGCCTCCCATTATTAATCGATGTA 58.829 40.000 0.00 0.00 0.00 2.29
4614 17541 5.003804 GTGCCTCCCATTATTAATCGATGT 58.996 41.667 0.00 0.00 0.00 3.06
4615 17542 5.003160 TGTGCCTCCCATTATTAATCGATG 58.997 41.667 0.00 0.00 0.00 3.84
4616 17543 5.241403 TGTGCCTCCCATTATTAATCGAT 57.759 39.130 0.00 0.00 0.00 3.59
4617 17544 4.698201 TGTGCCTCCCATTATTAATCGA 57.302 40.909 0.00 0.00 0.00 3.59
4618 17545 5.067153 TGTTTGTGCCTCCCATTATTAATCG 59.933 40.000 0.00 0.00 0.00 3.34
4619 17546 6.463995 TGTTTGTGCCTCCCATTATTAATC 57.536 37.500 0.00 0.00 0.00 1.75
4620 17547 7.563188 TGTATGTTTGTGCCTCCCATTATTAAT 59.437 33.333 0.00 0.00 0.00 1.40
4621 17548 6.892456 TGTATGTTTGTGCCTCCCATTATTAA 59.108 34.615 0.00 0.00 0.00 1.40
4622 17549 6.427441 TGTATGTTTGTGCCTCCCATTATTA 58.573 36.000 0.00 0.00 0.00 0.98
4623 17550 5.268387 TGTATGTTTGTGCCTCCCATTATT 58.732 37.500 0.00 0.00 0.00 1.40
4624 17551 4.865905 TGTATGTTTGTGCCTCCCATTAT 58.134 39.130 0.00 0.00 0.00 1.28
4625 17552 4.308526 TGTATGTTTGTGCCTCCCATTA 57.691 40.909 0.00 0.00 0.00 1.90
4626 17553 3.168035 TGTATGTTTGTGCCTCCCATT 57.832 42.857 0.00 0.00 0.00 3.16
4627 17554 2.897271 TGTATGTTTGTGCCTCCCAT 57.103 45.000 0.00 0.00 0.00 4.00
4628 17555 2.666272 TTGTATGTTTGTGCCTCCCA 57.334 45.000 0.00 0.00 0.00 4.37
4629 17556 2.825532 ACATTGTATGTTTGTGCCTCCC 59.174 45.455 0.00 0.00 41.63 4.30
4630 17557 4.457603 TGTACATTGTATGTTTGTGCCTCC 59.542 41.667 0.00 0.00 41.63 4.30
4631 17558 5.181245 ACTGTACATTGTATGTTTGTGCCTC 59.819 40.000 0.00 0.00 41.63 4.70
4632 17559 5.070001 ACTGTACATTGTATGTTTGTGCCT 58.930 37.500 0.00 0.00 41.63 4.75
4633 17560 5.371115 ACTGTACATTGTATGTTTGTGCC 57.629 39.130 0.00 0.00 41.63 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.