Multiple sequence alignment - TraesCS6B01G396600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G396600 chr6B 100.000 3452 0 0 1 3452 672500311 672496860 0.000000e+00 6375
1 TraesCS6B01G396600 chr6B 89.261 2300 203 18 133 2419 673763526 673765794 0.000000e+00 2839
2 TraesCS6B01G396600 chr6B 83.127 1618 246 19 819 2420 618670276 618668670 0.000000e+00 1450
3 TraesCS6B01G396600 chr6B 86.704 722 73 14 232 950 22118623 22117922 0.000000e+00 780
4 TraesCS6B01G396600 chr6B 86.565 722 75 13 232 950 9132281 9131579 0.000000e+00 776
5 TraesCS6B01G396600 chr6B 86.288 722 74 15 232 950 9112701 9112002 0.000000e+00 761
6 TraesCS6B01G396600 chr6B 76.408 373 66 9 2277 2644 673897941 673898296 7.610000e-42 182
7 TraesCS6B01G396600 chr6A 92.997 3484 186 27 1 3450 592469985 592466526 0.000000e+00 5029
8 TraesCS6B01G396600 chr6A 88.232 1691 173 13 745 2419 592599397 592601077 0.000000e+00 1997
9 TraesCS6B01G396600 chr6A 83.762 1632 233 23 810 2420 556038497 556036877 0.000000e+00 1517
10 TraesCS6B01G396600 chr6A 81.432 1858 298 32 818 2644 592458969 592457128 0.000000e+00 1476
11 TraesCS6B01G396600 chr6A 80.748 1844 308 26 823 2644 592618161 592619979 0.000000e+00 1395
12 TraesCS6B01G396600 chr6A 80.583 206 36 4 2975 3179 592457075 592456873 4.610000e-34 156
13 TraesCS6B01G396600 chr6A 87.500 120 13 2 3002 3121 592620051 592620168 1.670000e-28 137
14 TraesCS6B01G396600 chr6D 93.281 2292 109 19 463 2735 445794208 445791943 0.000000e+00 3338
15 TraesCS6B01G396600 chr6D 84.435 1619 229 14 818 2420 411470977 411469366 0.000000e+00 1572
16 TraesCS6B01G396600 chr6D 82.049 1855 291 25 823 2644 445788965 445787120 0.000000e+00 1543
17 TraesCS6B01G396600 chr6D 80.955 1801 294 27 823 2600 445964301 445966075 0.000000e+00 1380
18 TraesCS6B01G396600 chr6D 93.720 621 25 5 2837 3452 445791949 445791338 0.000000e+00 918
19 TraesCS6B01G396600 chr6D 77.731 238 44 5 2967 3203 445777056 445776827 1.670000e-28 137
20 TraesCS6B01G396600 chr6D 84.672 137 19 2 2492 2627 445968796 445968931 6.010000e-28 135
21 TraesCS6B01G396600 chr5B 86.950 705 71 12 245 946 667208834 667209520 0.000000e+00 773
22 TraesCS6B01G396600 chr1A 86.326 724 74 15 232 950 69141737 69142440 0.000000e+00 765
23 TraesCS6B01G396600 chr1A 84.732 596 70 11 335 927 412533137 412533714 8.310000e-161 577
24 TraesCS6B01G396600 chr1B 86.288 722 76 14 232 950 614436627 614437328 0.000000e+00 763
25 TraesCS6B01G396600 chr4A 86.197 710 75 12 245 950 635617664 635618354 0.000000e+00 747
26 TraesCS6B01G396600 chr4A 85.614 709 81 13 245 950 635697919 635698609 0.000000e+00 725
27 TraesCS6B01G396600 chr7A 85.738 596 65 9 335 927 714898695 714898117 2.280000e-171 612
28 TraesCS6B01G396600 chr7A 84.976 619 72 10 335 950 305165284 305164684 2.950000e-170 608
29 TraesCS6B01G396600 chr5A 85.581 215 20 6 736 950 153397401 153397198 7.500000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G396600 chr6B 672496860 672500311 3451 True 6375.0 6375 100.000000 1 3452 1 chr6B.!!$R5 3451
1 TraesCS6B01G396600 chr6B 673763526 673765794 2268 False 2839.0 2839 89.261000 133 2419 1 chr6B.!!$F1 2286
2 TraesCS6B01G396600 chr6B 618668670 618670276 1606 True 1450.0 1450 83.127000 819 2420 1 chr6B.!!$R4 1601
3 TraesCS6B01G396600 chr6B 22117922 22118623 701 True 780.0 780 86.704000 232 950 1 chr6B.!!$R3 718
4 TraesCS6B01G396600 chr6B 9131579 9132281 702 True 776.0 776 86.565000 232 950 1 chr6B.!!$R2 718
5 TraesCS6B01G396600 chr6B 9112002 9112701 699 True 761.0 761 86.288000 232 950 1 chr6B.!!$R1 718
6 TraesCS6B01G396600 chr6A 592466526 592469985 3459 True 5029.0 5029 92.997000 1 3450 1 chr6A.!!$R2 3449
7 TraesCS6B01G396600 chr6A 592599397 592601077 1680 False 1997.0 1997 88.232000 745 2419 1 chr6A.!!$F1 1674
8 TraesCS6B01G396600 chr6A 556036877 556038497 1620 True 1517.0 1517 83.762000 810 2420 1 chr6A.!!$R1 1610
9 TraesCS6B01G396600 chr6A 592456873 592458969 2096 True 816.0 1476 81.007500 818 3179 2 chr6A.!!$R3 2361
10 TraesCS6B01G396600 chr6A 592618161 592620168 2007 False 766.0 1395 84.124000 823 3121 2 chr6A.!!$F2 2298
11 TraesCS6B01G396600 chr6D 445787120 445794208 7088 True 1933.0 3338 89.683333 463 3452 3 chr6D.!!$R3 2989
12 TraesCS6B01G396600 chr6D 411469366 411470977 1611 True 1572.0 1572 84.435000 818 2420 1 chr6D.!!$R1 1602
13 TraesCS6B01G396600 chr6D 445964301 445968931 4630 False 757.5 1380 82.813500 823 2627 2 chr6D.!!$F1 1804
14 TraesCS6B01G396600 chr5B 667208834 667209520 686 False 773.0 773 86.950000 245 946 1 chr5B.!!$F1 701
15 TraesCS6B01G396600 chr1A 69141737 69142440 703 False 765.0 765 86.326000 232 950 1 chr1A.!!$F1 718
16 TraesCS6B01G396600 chr1A 412533137 412533714 577 False 577.0 577 84.732000 335 927 1 chr1A.!!$F2 592
17 TraesCS6B01G396600 chr1B 614436627 614437328 701 False 763.0 763 86.288000 232 950 1 chr1B.!!$F1 718
18 TraesCS6B01G396600 chr4A 635617664 635618354 690 False 747.0 747 86.197000 245 950 1 chr4A.!!$F1 705
19 TraesCS6B01G396600 chr4A 635697919 635698609 690 False 725.0 725 85.614000 245 950 1 chr4A.!!$F2 705
20 TraesCS6B01G396600 chr7A 714898117 714898695 578 True 612.0 612 85.738000 335 927 1 chr7A.!!$R2 592
21 TraesCS6B01G396600 chr7A 305164684 305165284 600 True 608.0 608 84.976000 335 950 1 chr7A.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 672 0.743097 GCAGGGGAATGTTCAGATGC 59.257 55.000 0.0 0.0 0.0 3.91 F
979 1032 1.302033 CACCTGCCGAGCTTTGAGT 60.302 57.895 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 7087 0.256752 TGGATGACAGGCCCTTCATG 59.743 55.0 19.13 4.43 32.43 3.07 R
2694 10539 0.326595 TAAATGGAGAAGGTGCCGCA 59.673 50.0 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 2.491675 AGCCCAAACCAGCTTACTAC 57.508 50.000 0.00 0.00 35.22 2.73
173 179 2.809601 CTCGCCGAGGTGGTTTCG 60.810 66.667 6.13 0.00 41.21 3.46
184 190 1.673009 TGGTTTCGCCGTCCAATCC 60.673 57.895 0.00 0.00 41.21 3.01
185 191 1.673009 GGTTTCGCCGTCCAATCCA 60.673 57.895 0.00 0.00 0.00 3.41
186 192 1.500396 GTTTCGCCGTCCAATCCAC 59.500 57.895 0.00 0.00 0.00 4.02
187 193 1.673009 TTTCGCCGTCCAATCCACC 60.673 57.895 0.00 0.00 0.00 4.61
188 194 3.615509 TTCGCCGTCCAATCCACCC 62.616 63.158 0.00 0.00 0.00 4.61
190 196 4.815108 GCCGTCCAATCCACCCCC 62.815 72.222 0.00 0.00 0.00 5.40
191 197 3.015145 CCGTCCAATCCACCCCCT 61.015 66.667 0.00 0.00 0.00 4.79
535 567 5.760743 GCTAGAGGAAATAGCTTGGTTTAGG 59.239 44.000 0.00 0.00 41.96 2.69
616 648 7.709269 TTGTATTTCCATATACGAGTTCAGC 57.291 36.000 0.00 0.00 34.42 4.26
638 671 1.396653 GGCAGGGGAATGTTCAGATG 58.603 55.000 0.00 0.00 0.00 2.90
639 672 0.743097 GCAGGGGAATGTTCAGATGC 59.257 55.000 0.00 0.00 0.00 3.91
650 683 1.474077 GTTCAGATGCCATGTGGGTTC 59.526 52.381 1.60 0.00 39.65 3.62
660 693 2.295909 CCATGTGGGTTCGTTGTTCAAT 59.704 45.455 0.00 0.00 0.00 2.57
661 694 3.243704 CCATGTGGGTTCGTTGTTCAATT 60.244 43.478 0.00 0.00 0.00 2.32
662 695 3.701532 TGTGGGTTCGTTGTTCAATTC 57.298 42.857 0.00 0.00 0.00 2.17
663 696 3.283751 TGTGGGTTCGTTGTTCAATTCT 58.716 40.909 0.00 0.00 0.00 2.40
664 697 4.452825 TGTGGGTTCGTTGTTCAATTCTA 58.547 39.130 0.00 0.00 0.00 2.10
665 698 4.513692 TGTGGGTTCGTTGTTCAATTCTAG 59.486 41.667 0.00 0.00 0.00 2.43
666 699 4.514066 GTGGGTTCGTTGTTCAATTCTAGT 59.486 41.667 0.00 0.00 0.00 2.57
667 700 5.697633 GTGGGTTCGTTGTTCAATTCTAGTA 59.302 40.000 0.00 0.00 0.00 1.82
696 729 8.674173 TGGTATATTTGTACATTATCACCCCAT 58.326 33.333 0.00 0.00 0.00 4.00
807 843 2.789208 CTGCTGCATTGATTTACCGTG 58.211 47.619 1.31 0.00 0.00 4.94
810 846 3.944650 TGCTGCATTGATTTACCGTGTAT 59.055 39.130 0.00 0.00 0.00 2.29
811 847 4.397730 TGCTGCATTGATTTACCGTGTATT 59.602 37.500 0.00 0.00 0.00 1.89
812 848 4.734854 GCTGCATTGATTTACCGTGTATTG 59.265 41.667 0.00 0.00 0.00 1.90
813 849 5.676079 GCTGCATTGATTTACCGTGTATTGT 60.676 40.000 0.00 0.00 0.00 2.71
814 850 6.260870 TGCATTGATTTACCGTGTATTGTT 57.739 33.333 0.00 0.00 0.00 2.83
815 851 7.379098 TGCATTGATTTACCGTGTATTGTTA 57.621 32.000 0.00 0.00 0.00 2.41
816 852 7.990917 TGCATTGATTTACCGTGTATTGTTAT 58.009 30.769 0.00 0.00 0.00 1.89
847 885 6.762108 AGATAAGCACATAAAACTTTCGACG 58.238 36.000 0.00 0.00 0.00 5.12
979 1032 1.302033 CACCTGCCGAGCTTTGAGT 60.302 57.895 0.00 0.00 0.00 3.41
1041 1103 4.261072 CCACTGCTTGCAGATATCATCAAC 60.261 45.833 26.71 4.66 0.00 3.18
1214 1276 5.706916 CAATTTGTGGAAAGTGGAGATCAG 58.293 41.667 0.00 0.00 34.26 2.90
1230 1292 4.160329 AGATCAGTTACTCTGGTTGGACA 58.840 43.478 0.00 0.00 43.76 4.02
1528 1590 9.566331 AGTATCTTGGGAGATATGGATCATTAA 57.434 33.333 0.00 0.00 44.46 1.40
1536 1598 7.334858 GGAGATATGGATCATTAAGGGAACTC 58.665 42.308 0.00 0.00 35.06 3.01
1617 1679 2.554462 GAGGAAGCTCCAAAGGTTTGAC 59.446 50.000 3.95 0.00 43.10 3.18
1701 6663 7.106239 GCTACCCATATAGCTATGACATTTGT 58.894 38.462 16.77 6.84 43.62 2.83
1773 6736 4.903045 AATTGGACTCCGTTTTCTCCTA 57.097 40.909 0.00 0.00 0.00 2.94
2124 7087 2.225019 CAGCATATTTGATGACGAGGGC 59.775 50.000 0.00 0.00 41.87 5.19
2194 7157 6.459066 GTGGATTGCTGCTCTATAACTGATA 58.541 40.000 0.00 0.00 0.00 2.15
2254 7217 1.270839 ACCTCACACTCCGGAAATGTG 60.271 52.381 30.09 30.09 44.14 3.21
2373 7336 2.568090 GGTGCGGCCAAATCAGTG 59.432 61.111 2.24 0.00 37.17 3.66
2421 10251 5.361857 CCATGACAGCCTAAAAGGAATGAAT 59.638 40.000 0.00 0.00 37.67 2.57
2460 10302 0.976641 AGTCGCCCTGAATTCAGTCA 59.023 50.000 29.03 10.80 42.27 3.41
2490 10333 8.798153 GCTGTTAATTTGTGTTGCTATATGTTC 58.202 33.333 0.00 0.00 0.00 3.18
2622 10467 5.122396 GGCAGTGTGAGATTCGTTTTAGAAT 59.878 40.000 0.00 0.00 42.92 2.40
2639 10484 4.853924 AGAATTTTGCCAGAATTCGTGT 57.146 36.364 13.21 0.00 44.35 4.49
2681 10526 0.534203 TGTGCCGGTTCTGGTCTTTC 60.534 55.000 1.90 0.00 0.00 2.62
2689 10534 2.287103 GGTTCTGGTCTTTCGTGTGTTC 59.713 50.000 0.00 0.00 0.00 3.18
2694 10539 1.662122 GGTCTTTCGTGTGTTCGTTGT 59.338 47.619 0.00 0.00 0.00 3.32
2704 10549 2.515057 TTCGTTGTGCGGCACCTT 60.515 55.556 28.57 0.00 41.72 3.50
2712 10557 1.074775 TGCGGCACCTTCTCCATTT 59.925 52.632 0.00 0.00 0.00 2.32
2736 10581 2.407616 CATGTGCAGCGCCTGATG 59.592 61.111 2.29 0.00 32.44 3.07
2750 10595 1.769098 CTGATGTGCGATTCCTGCCG 61.769 60.000 0.00 0.00 0.00 5.69
2792 10637 8.406297 TGATCTATGTGAGTACATTGTAGTGAC 58.594 37.037 12.64 12.64 45.01 3.67
2836 10681 4.284550 TGGGCAGTTGGGGCACTC 62.285 66.667 0.00 0.00 35.15 3.51
2852 10697 2.353109 GCACTCGCCTGAGCATATCATA 60.353 50.000 0.00 0.00 46.69 2.15
2855 10700 4.329256 CACTCGCCTGAGCATATCATATTG 59.671 45.833 0.00 0.00 46.69 1.90
2874 10719 8.286800 TCATATTGTTTTTCTTTGTACACCTCG 58.713 33.333 0.00 0.00 0.00 4.63
2928 10773 1.346722 TCCACCGAGGAAGAGTTTTCC 59.653 52.381 4.22 4.22 45.65 3.13
2931 10776 3.412386 CACCGAGGAAGAGTTTTCCATT 58.588 45.455 14.50 0.00 41.00 3.16
2935 10780 5.880887 ACCGAGGAAGAGTTTTCCATTAATC 59.119 40.000 14.50 2.48 41.00 1.75
3000 10845 3.154827 TCTCCAAACATGGTTCCCTTC 57.845 47.619 0.00 0.00 0.00 3.46
3087 10932 6.970043 TGCAATATTTAATGTTCAGGCGTAAC 59.030 34.615 0.00 0.00 0.00 2.50
3108 10953 3.012518 CTGAGCACATTAAACCTGGAGG 58.987 50.000 0.00 0.00 42.17 4.30
3187 11032 6.958255 TGAACTTATCAACTCAACACATGTG 58.042 36.000 24.25 24.25 34.30 3.21
3189 11034 2.975410 ATCAACTCAACACATGTGCG 57.025 45.000 25.68 16.80 0.00 5.34
3191 11036 0.993251 CAACTCAACACATGTGCGCG 60.993 55.000 25.68 14.16 0.00 6.86
3207 11052 1.685640 CGCGCATGAAACAAATGCCC 61.686 55.000 8.75 0.00 46.21 5.36
3223 11068 6.322712 ACAAATGCCCTTTTACTACACTGAAA 59.677 34.615 0.00 0.00 0.00 2.69
3226 11071 5.381757 TGCCCTTTTACTACACTGAAACAT 58.618 37.500 0.00 0.00 0.00 2.71
3241 11086 9.466497 ACACTGAAACATTCATGGTAATATTCT 57.534 29.630 0.00 0.00 39.30 2.40
3242 11087 9.726232 CACTGAAACATTCATGGTAATATTCTG 57.274 33.333 0.00 2.60 39.30 3.02
3264 11109 5.117584 TGTCGTTACACTAAAGAAGGCAAA 58.882 37.500 0.00 0.00 0.00 3.68
3285 11130 7.137426 GCAAAGATCTATGTAAAATGGCAGAG 58.863 38.462 0.00 0.00 0.00 3.35
3308 11153 9.182214 AGAGAAAACATATACATTGTTGCATCT 57.818 29.630 0.00 0.00 37.38 2.90
3323 11168 1.472201 GCATCTCAGCCAAGACGATGA 60.472 52.381 0.00 0.00 34.82 2.92
3330 11175 1.089920 GCCAAGACGATGATGCTGTT 58.910 50.000 0.00 0.00 0.00 3.16
3335 11180 2.341257 AGACGATGATGCTGTTGACAC 58.659 47.619 0.00 0.00 0.00 3.67
3336 11181 1.394917 GACGATGATGCTGTTGACACC 59.605 52.381 0.00 0.00 0.00 4.16
3367 11212 2.166459 TCGGATGGCTGAAACTACTCAG 59.834 50.000 0.00 0.00 44.82 3.35
3450 11305 3.045601 GCTACAAGAGCCAAGACTTCA 57.954 47.619 0.00 0.00 46.41 3.02
3451 11306 2.999355 GCTACAAGAGCCAAGACTTCAG 59.001 50.000 0.00 0.00 46.41 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.357034 CGGCCCATATTCGACCGG 60.357 66.667 0.00 0.00 40.18 5.28
100 101 1.202110 GCTTCGCAGTAGTACGCAGTA 60.202 52.381 14.47 0.00 45.11 2.74
102 103 1.140407 GGCTTCGCAGTAGTACGCAG 61.140 60.000 14.47 8.23 0.00 5.18
173 179 4.815108 GGGGGTGGATTGGACGGC 62.815 72.222 0.00 0.00 0.00 5.68
177 183 0.926293 GATTGAGGGGGTGGATTGGA 59.074 55.000 0.00 0.00 0.00 3.53
184 190 2.438434 GCGGTGATTGAGGGGGTG 60.438 66.667 0.00 0.00 0.00 4.61
185 191 3.728373 GGCGGTGATTGAGGGGGT 61.728 66.667 0.00 0.00 0.00 4.95
186 192 4.856801 CGGCGGTGATTGAGGGGG 62.857 72.222 0.00 0.00 0.00 5.40
187 193 3.622060 AACGGCGGTGATTGAGGGG 62.622 63.158 13.24 0.00 0.00 4.79
188 194 1.644786 GAAACGGCGGTGATTGAGGG 61.645 60.000 13.24 0.00 0.00 4.30
189 195 1.644786 GGAAACGGCGGTGATTGAGG 61.645 60.000 13.24 0.00 0.00 3.86
190 196 0.673644 AGGAAACGGCGGTGATTGAG 60.674 55.000 13.24 0.00 0.00 3.02
191 197 0.672401 GAGGAAACGGCGGTGATTGA 60.672 55.000 13.24 0.00 0.00 2.57
269 283 0.906775 GGACCCAAATCCGTACCTCA 59.093 55.000 0.00 0.00 0.00 3.86
470 486 1.301716 ACACACAACAGCGGCCTAG 60.302 57.895 0.00 0.00 0.00 3.02
573 605 5.317733 ACAAACCAACAAATCAGACGAAA 57.682 34.783 0.00 0.00 0.00 3.46
616 648 0.745845 CTGAACATTCCCCTGCCGAG 60.746 60.000 0.00 0.00 0.00 4.63
638 671 0.039527 GAACAACGAACCCACATGGC 60.040 55.000 0.00 0.00 37.83 4.40
639 672 1.313772 TGAACAACGAACCCACATGG 58.686 50.000 0.00 0.00 41.37 3.66
683 716 4.169059 TCTGTTGGATGGGGTGATAATG 57.831 45.455 0.00 0.00 0.00 1.90
690 723 9.897040 ATTATATAAATTTCTGTTGGATGGGGT 57.103 29.630 0.00 0.00 0.00 4.95
763 799 2.761767 TCCAACTTGCATCCATTCCATG 59.238 45.455 0.00 0.00 0.00 3.66
797 833 9.828852 TTCACAAATAACAATACACGGTAAATC 57.171 29.630 0.00 0.00 0.00 2.17
973 1026 3.244033 CACAACTTGGGCAAACTCAAA 57.756 42.857 0.00 0.00 0.00 2.69
1041 1103 1.471287 TCACTCGACACGGTAATCCTG 59.529 52.381 0.00 0.00 0.00 3.86
1528 1590 4.286291 ACAATCCTTTAGAACGAGTTCCCT 59.714 41.667 11.87 0.00 40.33 4.20
1536 1598 6.316140 TGATTCCATCACAATCCTTTAGAACG 59.684 38.462 0.00 0.00 33.59 3.95
1617 1679 7.337942 AGCCAGTAAGTTCCATTAATCTCAAAG 59.662 37.037 0.00 0.00 0.00 2.77
1701 6663 9.753674 AACCTAAGATCCTTCAAATTATCACAA 57.246 29.630 0.00 0.00 0.00 3.33
1773 6736 0.971386 CCAATGCTTTGCACTTCCCT 59.029 50.000 6.81 0.00 43.04 4.20
2015 6978 7.224949 GTGTGAAGCCTATTTCAGTAGGATAAC 59.775 40.741 4.21 1.69 43.27 1.89
2124 7087 0.256752 TGGATGACAGGCCCTTCATG 59.743 55.000 19.13 4.43 32.43 3.07
2254 7217 2.501723 ACCCATCATCTGTCACACTACC 59.498 50.000 0.00 0.00 0.00 3.18
2291 7254 4.101585 TCAGTGACTCCAACTTCTGTGAAT 59.898 41.667 0.00 0.00 0.00 2.57
2325 7288 1.519246 CTGAGAGATCCAGCGGCAA 59.481 57.895 1.45 0.00 0.00 4.52
2361 7324 1.740025 GAGTAGCACACTGATTTGGCC 59.260 52.381 0.00 0.00 37.72 5.36
2373 7336 2.017782 TCAGTCTCCGATGAGTAGCAC 58.982 52.381 0.00 0.00 39.75 4.40
2421 10251 5.204409 ACTGACGTATTTTCCTGTACACA 57.796 39.130 0.00 0.00 0.00 3.72
2460 10302 4.959723 AGCAACACAAATTAACAGCCAAT 58.040 34.783 0.00 0.00 0.00 3.16
2490 10333 0.934496 TGTGGTTTCGAAGTTCTGCG 59.066 50.000 0.00 0.00 0.00 5.18
2622 10467 5.446143 AATACACACGAATTCTGGCAAAA 57.554 34.783 3.52 0.00 0.00 2.44
2639 10484 7.011016 CACAAACGACTATCAAGCCATAATACA 59.989 37.037 0.00 0.00 0.00 2.29
2689 10534 2.954753 GAGAAGGTGCCGCACAACG 61.955 63.158 24.43 0.00 42.61 4.10
2694 10539 0.326595 TAAATGGAGAAGGTGCCGCA 59.673 50.000 0.00 0.00 0.00 5.69
2704 10549 5.114764 TGCACATGGAGAATAAATGGAGA 57.885 39.130 0.00 0.00 0.00 3.71
2712 10557 0.815213 GGCGCTGCACATGGAGAATA 60.815 55.000 7.64 0.00 35.31 1.75
2736 10581 2.526120 GCTACGGCAGGAATCGCAC 61.526 63.158 0.00 0.00 38.54 5.34
2792 10637 7.038048 TGATTAGTGATTACTGTCAGCAAGAG 58.962 38.462 0.00 0.00 37.78 2.85
2836 10681 5.618056 AAACAATATGATATGCTCAGGCG 57.382 39.130 0.00 0.00 42.25 5.52
2852 10697 5.735070 GCCGAGGTGTACAAAGAAAAACAAT 60.735 40.000 0.00 0.00 0.00 2.71
2855 10700 3.314357 AGCCGAGGTGTACAAAGAAAAAC 59.686 43.478 0.00 0.00 0.00 2.43
2864 10709 0.535335 GGATTGAGCCGAGGTGTACA 59.465 55.000 0.00 0.00 0.00 2.90
2874 10719 2.157738 GCATCATACCAGGATTGAGCC 58.842 52.381 0.00 0.00 0.00 4.70
2935 10780 8.616076 CACCTTTCAGATAGCTACAATAAAAGG 58.384 37.037 22.50 22.50 43.62 3.11
2994 10839 8.711170 ACACCGAGAATATAAAAATAGAAGGGA 58.289 33.333 0.00 0.00 0.00 4.20
3012 10857 7.795482 TCTTTTGAAATTTAGAACACCGAGA 57.205 32.000 0.00 0.00 0.00 4.04
3074 10919 0.391228 TGCTCAGTTACGCCTGAACA 59.609 50.000 2.27 1.52 40.78 3.18
3087 10932 3.012518 CCTCCAGGTTTAATGTGCTCAG 58.987 50.000 0.00 0.00 0.00 3.35
3108 10953 2.960819 ACAACGGTTAGCAGATCTCAC 58.039 47.619 0.00 0.00 0.00 3.51
3187 11032 1.057668 GCATTTGTTTCATGCGCGC 59.942 52.632 27.26 27.26 37.88 6.86
3191 11036 4.996758 AGTAAAAGGGCATTTGTTTCATGC 59.003 37.500 0.00 0.00 45.47 4.06
3207 11052 8.567948 ACCATGAATGTTTCAGTGTAGTAAAAG 58.432 33.333 0.00 0.00 43.98 2.27
3223 11068 9.042008 GTAACGACAGAATATTACCATGAATGT 57.958 33.333 0.00 0.00 0.00 2.71
3226 11071 8.255206 AGTGTAACGACAGAATATTACCATGAA 58.745 33.333 0.00 0.00 45.86 2.57
3241 11086 4.325028 TGCCTTCTTTAGTGTAACGACA 57.675 40.909 0.00 0.00 45.86 4.35
3242 11087 5.464389 TCTTTGCCTTCTTTAGTGTAACGAC 59.536 40.000 0.00 0.00 45.86 4.34
3264 11109 8.897752 GTTTTCTCTGCCATTTTACATAGATCT 58.102 33.333 0.00 0.00 0.00 2.75
3285 11130 9.229784 CTGAGATGCAACAATGTATATGTTTTC 57.770 33.333 0.00 0.00 38.90 2.29
3308 11153 0.538584 AGCATCATCGTCTTGGCTGA 59.461 50.000 0.00 0.00 0.00 4.26
3323 11168 1.002430 ACAGATCGGTGTCAACAGCAT 59.998 47.619 12.33 5.36 44.00 3.79
3336 11181 0.316522 AGCCATCCGATGACAGATCG 59.683 55.000 10.12 0.00 40.86 3.69
3414 11269 7.227512 GCTCTTGTAGCCATTACATCACTAATT 59.772 37.037 0.00 0.00 46.25 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.