Multiple sequence alignment - TraesCS6B01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G395900 chr6B 100.000 2672 0 0 1 2672 671925219 671922548 0.000000e+00 4935.0
1 TraesCS6B01G395900 chr6B 90.520 981 86 3 1695 2672 670874222 670875198 0.000000e+00 1290.0
2 TraesCS6B01G395900 chr6B 82.609 69 11 1 2120 2188 671079390 671079457 2.870000e-05 60.2
3 TraesCS6B01G395900 chr6B 85.714 56 8 0 2133 2188 671577913 671577858 2.870000e-05 60.2
4 TraesCS6B01G395900 chr2B 98.050 872 15 1 1 872 646732556 646733425 0.000000e+00 1515.0
5 TraesCS6B01G395900 chr2B 96.390 831 29 1 867 1697 646733485 646734314 0.000000e+00 1367.0
6 TraesCS6B01G395900 chr5B 97.592 872 19 1 1 872 146831814 146830945 0.000000e+00 1493.0
7 TraesCS6B01G395900 chr5B 96.867 830 25 1 867 1696 146830885 146830057 0.000000e+00 1387.0
8 TraesCS6B01G395900 chr5D 94.186 860 48 1 1 860 346313165 346314022 0.000000e+00 1310.0
9 TraesCS6B01G395900 chr5D 95.153 619 25 2 1079 1696 346324981 346325595 0.000000e+00 972.0
10 TraesCS6B01G395900 chr5D 93.665 221 14 0 867 1087 346314085 346314305 5.510000e-87 331.0
11 TraesCS6B01G395900 chr3A 92.775 872 55 4 2 872 592497105 592496241 0.000000e+00 1254.0
12 TraesCS6B01G395900 chr3A 91.908 828 64 3 867 1694 592496181 592495357 0.000000e+00 1155.0
13 TraesCS6B01G395900 chr3A 78.408 829 173 6 872 1696 643745017 643745843 3.920000e-148 534.0
14 TraesCS6B01G395900 chr3B 97.082 514 15 0 1189 1702 338601104 338600591 0.000000e+00 867.0
15 TraesCS6B01G395900 chr6D 82.857 70 8 4 173 240 292961115 292961182 2.870000e-05 60.2
16 TraesCS6B01G395900 chr4D 83.582 67 7 4 176 240 20561011 20560947 2.870000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G395900 chr6B 671922548 671925219 2671 True 4935.0 4935 100.0000 1 2672 1 chr6B.!!$R2 2671
1 TraesCS6B01G395900 chr6B 670874222 670875198 976 False 1290.0 1290 90.5200 1695 2672 1 chr6B.!!$F1 977
2 TraesCS6B01G395900 chr2B 646732556 646734314 1758 False 1441.0 1515 97.2200 1 1697 2 chr2B.!!$F1 1696
3 TraesCS6B01G395900 chr5B 146830057 146831814 1757 True 1440.0 1493 97.2295 1 1696 2 chr5B.!!$R1 1695
4 TraesCS6B01G395900 chr5D 346324981 346325595 614 False 972.0 972 95.1530 1079 1696 1 chr5D.!!$F1 617
5 TraesCS6B01G395900 chr5D 346313165 346314305 1140 False 820.5 1310 93.9255 1 1087 2 chr5D.!!$F2 1086
6 TraesCS6B01G395900 chr3A 592495357 592497105 1748 True 1204.5 1254 92.3415 2 1694 2 chr3A.!!$R1 1692
7 TraesCS6B01G395900 chr3A 643745017 643745843 826 False 534.0 534 78.4080 872 1696 1 chr3A.!!$F1 824
8 TraesCS6B01G395900 chr3B 338600591 338601104 513 True 867.0 867 97.0820 1189 1702 1 chr3B.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.822532 CAGGATGCCCAAGATCAGCC 60.823 60.0 0.0 0.0 38.94 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2315 0.036388 TCGACAGGAAGGGTTGCATC 60.036 55.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.607178 TGGTGCAAGCCATCCCAAG 60.607 57.895 0.00 0.00 32.81 3.61
333 334 0.822532 CAGGATGCCCAAGATCAGCC 60.823 60.000 0.00 0.00 38.94 4.85
394 395 2.299867 CTGCAAAAGGGCTTGTTATGGT 59.700 45.455 0.00 0.00 34.04 3.55
499 500 3.107601 CCAGTGGAAGAGGATTGGACTA 58.892 50.000 1.68 0.00 0.00 2.59
543 544 8.497745 ACAGATGGTAAATACTGGAATGAAGAT 58.502 33.333 0.00 0.00 35.08 2.40
670 671 1.338769 GGGCATCTACACTGTTCGGTT 60.339 52.381 0.00 0.00 0.00 4.44
992 1058 4.568956 TGGATAGATAATGCATGTGACCG 58.431 43.478 0.00 0.00 29.80 4.79
1099 1166 0.321564 TCGTGTGGCTGGGAAGATTG 60.322 55.000 0.00 0.00 0.00 2.67
1185 1252 7.610865 AGAACCAAACTTCAGTTCAAAAATGA 58.389 30.769 5.07 0.00 41.86 2.57
1191 1258 7.587037 AACTTCAGTTCAAAAATGATCTCCA 57.413 32.000 0.00 0.00 31.64 3.86
1512 1579 8.677148 TTGATATTAAGAGTAGGGCATCAAAC 57.323 34.615 0.00 0.00 30.50 2.93
1735 1802 2.226200 TGGCGGCAATGATTCATTATCG 59.774 45.455 10.22 20.05 35.94 2.92
1744 1811 6.740002 GCAATGATTCATTATCGTAGTCATGC 59.260 38.462 11.44 4.05 35.94 4.06
1745 1812 6.974932 ATGATTCATTATCGTAGTCATGCC 57.025 37.500 0.00 0.00 35.94 4.40
1746 1813 5.852827 TGATTCATTATCGTAGTCATGCCA 58.147 37.500 0.00 0.00 35.94 4.92
1752 1819 2.602257 TCGTAGTCATGCCATTGAGG 57.398 50.000 0.00 0.00 41.84 3.86
1756 1823 2.885135 AGTCATGCCATTGAGGTTCA 57.115 45.000 0.00 0.00 40.61 3.18
1758 1825 1.133790 GTCATGCCATTGAGGTTCAGC 59.866 52.381 0.00 0.00 40.61 4.26
1788 1855 3.813443 CTTCTTATGTGATGGAGGTGGG 58.187 50.000 0.00 0.00 0.00 4.61
1823 1893 0.679640 TTGGATGGTTGCGTGGGATC 60.680 55.000 0.00 0.00 0.00 3.36
1848 1918 1.941812 CCGACGATTAGCATTGGCC 59.058 57.895 0.00 0.00 42.56 5.36
1859 1929 2.838736 AGCATTGGCCTGTAGATAACG 58.161 47.619 3.32 0.00 42.56 3.18
1902 1972 2.879103 TGAAGTTGAGTCCCAATCCC 57.121 50.000 0.00 0.00 37.08 3.85
1910 1980 1.146263 GTCCCAATCCCGCACTAGG 59.854 63.158 0.00 0.00 0.00 3.02
1924 1994 1.697432 CACTAGGTTGGAGTTGGACCA 59.303 52.381 0.00 0.00 35.89 4.02
1942 2012 5.822519 TGGACCAAAATACTATGCATCTCAC 59.177 40.000 0.19 0.00 0.00 3.51
2039 2109 5.911752 TGTTTATTTGGAAGTGCACAATGT 58.088 33.333 21.04 0.20 0.00 2.71
2048 2118 5.163468 TGGAAGTGCACAATGTACAACAAAT 60.163 36.000 21.04 0.00 35.34 2.32
2050 2120 7.090173 GGAAGTGCACAATGTACAACAAATAT 58.910 34.615 21.04 0.00 35.34 1.28
2052 2122 9.619316 GAAGTGCACAATGTACAACAAATATAA 57.381 29.630 21.04 0.00 35.34 0.98
2057 2127 8.643752 GCACAATGTACAACAAATATAAACCAC 58.356 33.333 0.00 0.00 0.00 4.16
2067 2137 8.582930 CAACAAATATAAACCACGCAAATACAG 58.417 33.333 0.00 0.00 0.00 2.74
2068 2138 6.750039 ACAAATATAAACCACGCAAATACAGC 59.250 34.615 0.00 0.00 0.00 4.40
2082 2152 4.540359 AATACAGCCGTAACCAGTGTTA 57.460 40.909 0.00 0.00 35.87 2.41
2102 2172 9.334947 AGTGTTATGGAGAAGAATATGAACATG 57.665 33.333 0.00 0.00 0.00 3.21
2124 2194 7.172532 ACATGAAAAATCTCAGTAACGTGCTAA 59.827 33.333 0.00 0.00 0.00 3.09
2125 2195 6.884187 TGAAAAATCTCAGTAACGTGCTAAC 58.116 36.000 0.00 0.00 0.00 2.34
2150 2220 4.330074 CCATGTTCCTTCTACACGAATCAC 59.670 45.833 0.00 0.00 0.00 3.06
2165 2235 4.215965 CGAATCACGGTTACCAAAACAAG 58.784 43.478 1.13 0.00 38.46 3.16
2166 2236 4.542735 GAATCACGGTTACCAAAACAAGG 58.457 43.478 1.13 0.00 0.00 3.61
2244 2314 1.341209 CAAGCACCTTTTCCCCTTCAC 59.659 52.381 0.00 0.00 0.00 3.18
2245 2315 0.537371 AGCACCTTTTCCCCTTCACG 60.537 55.000 0.00 0.00 0.00 4.35
2270 2340 2.266055 CCTTCCTGTCGAGCCCAC 59.734 66.667 0.00 0.00 0.00 4.61
2283 2353 1.152756 GCCCACAGTCCCACAAACT 60.153 57.895 0.00 0.00 0.00 2.66
2287 2357 2.550208 CCCACAGTCCCACAAACTAGTC 60.550 54.545 0.00 0.00 0.00 2.59
2293 2363 3.322254 AGTCCCACAAACTAGTCTCACAG 59.678 47.826 0.00 0.00 0.00 3.66
2297 2367 4.038763 CCCACAAACTAGTCTCACAGTGTA 59.961 45.833 0.00 0.00 0.00 2.90
2308 2378 4.280174 GTCTCACAGTGTAACCACCTAGAA 59.720 45.833 0.00 0.00 42.88 2.10
2311 2381 3.070446 CACAGTGTAACCACCTAGAACCA 59.930 47.826 0.00 0.00 42.88 3.67
2319 2389 2.092753 ACCACCTAGAACCATCATGCAG 60.093 50.000 0.00 0.00 0.00 4.41
2321 2391 3.201290 CACCTAGAACCATCATGCAGTC 58.799 50.000 0.00 0.00 0.00 3.51
2339 2409 1.089481 TCGCATCAACGCTCCCATTC 61.089 55.000 0.00 0.00 0.00 2.67
2343 2413 2.816087 GCATCAACGCTCCCATTCATAT 59.184 45.455 0.00 0.00 0.00 1.78
2353 2423 5.106948 CGCTCCCATTCATATAACACACATC 60.107 44.000 0.00 0.00 0.00 3.06
2406 2476 6.459670 AAAAACATCCAAAGGAAACTACGT 57.540 33.333 0.00 0.00 42.68 3.57
2408 2478 5.684550 AACATCCAAAGGAAACTACGTTC 57.315 39.130 0.00 0.00 42.68 3.95
2421 2491 8.516811 GGAAACTACGTTCCACATGTATATAG 57.483 38.462 0.00 0.00 45.57 1.31
2422 2492 7.597743 GGAAACTACGTTCCACATGTATATAGG 59.402 40.741 0.00 0.00 45.57 2.57
2423 2493 6.022163 ACTACGTTCCACATGTATATAGGC 57.978 41.667 0.00 0.00 0.00 3.93
2424 2494 3.909430 ACGTTCCACATGTATATAGGCG 58.091 45.455 0.00 0.00 0.00 5.52
2447 2517 1.135094 CATGATGGAGTAGGCCAGGT 58.865 55.000 5.01 0.00 42.15 4.00
2448 2518 1.135094 ATGATGGAGTAGGCCAGGTG 58.865 55.000 5.01 0.00 42.15 4.00
2449 2519 0.252696 TGATGGAGTAGGCCAGGTGT 60.253 55.000 5.01 0.00 42.15 4.16
2476 2546 0.524862 GCACACTGATTGGAAGCCAG 59.475 55.000 0.00 0.00 33.81 4.85
2494 2564 4.014075 TGGGGCCGGTAGGAGGAA 62.014 66.667 1.90 0.00 41.02 3.36
2495 2565 3.162154 GGGGCCGGTAGGAGGAAG 61.162 72.222 1.90 0.00 41.02 3.46
2498 2568 4.222847 GCCGGTAGGAGGAAGGCG 62.223 72.222 1.90 0.00 41.02 5.52
2518 2588 1.474498 GGTGACGACAAGAAAGTGGGT 60.474 52.381 0.00 0.00 0.00 4.51
2519 2589 2.224113 GGTGACGACAAGAAAGTGGGTA 60.224 50.000 0.00 0.00 0.00 3.69
2529 2599 4.696479 AGAAAGTGGGTAGCTATCCATG 57.304 45.455 28.26 0.00 39.01 3.66
2564 2634 2.119495 TCTATGGGGAAGAGTTGGCTC 58.881 52.381 0.00 0.00 41.94 4.70
2576 2646 1.205893 AGTTGGCTCTGACGGAAGATC 59.794 52.381 0.00 0.00 0.00 2.75
2581 2651 1.402259 GCTCTGACGGAAGATCGAGAA 59.598 52.381 0.00 0.00 0.00 2.87
2584 2654 0.456221 TGACGGAAGATCGAGAAGGC 59.544 55.000 0.00 0.00 0.00 4.35
2585 2655 0.249114 GACGGAAGATCGAGAAGGCC 60.249 60.000 0.00 0.00 0.00 5.19
2645 2715 5.619086 GCGGAGTACTTAATGCATTTGTTGT 60.619 40.000 18.75 13.10 0.00 3.32
2655 2725 1.064803 GCATTTGTTGTGTGGACGTGA 59.935 47.619 0.00 0.00 0.00 4.35
2664 2734 2.229302 TGTGTGGACGTGACAATATCGA 59.771 45.455 0.00 0.00 0.00 3.59
2665 2735 3.247442 GTGTGGACGTGACAATATCGAA 58.753 45.455 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.443283 GTATTTGAAAGCAACTCATCACATATC 57.557 33.333 0.00 0.00 32.79 1.63
300 301 3.181447 GGCATCCTGATCTCCAGAAATCA 60.181 47.826 0.00 0.00 45.78 2.57
333 334 1.617322 TGCTACGCCAGGTATAGGAG 58.383 55.000 0.00 0.00 0.00 3.69
394 395 1.357137 TGCTTACCATCTCCCACACA 58.643 50.000 0.00 0.00 0.00 3.72
543 544 8.855110 TCTTCTGGAAACATTTTATTAACTGCA 58.145 29.630 0.00 0.00 41.51 4.41
651 652 2.094762 AACCGAACAGTGTAGATGCC 57.905 50.000 0.00 0.00 0.00 4.40
652 653 2.159627 CCAAACCGAACAGTGTAGATGC 59.840 50.000 0.00 0.00 0.00 3.91
670 671 3.197766 AGATCTCGCAAGGTTGTATCCAA 59.802 43.478 0.00 0.00 38.47 3.53
828 829 8.375493 TGTTCTCCAGTAGGTAGACAATTATT 57.625 34.615 0.00 0.00 35.89 1.40
1185 1252 3.470888 CCTTCCGGCGGTGGAGAT 61.471 66.667 27.32 0.00 39.72 2.75
1191 1258 3.881104 ACCAAACCTTCCGGCGGT 61.881 61.111 27.32 9.21 35.97 5.68
1211 1278 1.343821 GCAGCATCGACGTTAACCG 59.656 57.895 0.00 0.00 44.03 4.44
1711 1778 1.727511 ATGAATCATTGCCGCCACCG 61.728 55.000 0.00 0.00 0.00 4.94
1722 1789 6.466812 TGGCATGACTACGATAATGAATCAT 58.533 36.000 0.00 0.00 33.87 2.45
1723 1790 5.852827 TGGCATGACTACGATAATGAATCA 58.147 37.500 0.00 0.00 33.87 2.57
1735 1802 3.609853 TGAACCTCAATGGCATGACTAC 58.390 45.455 0.00 0.00 40.22 2.73
1744 1811 0.745845 CCCTCGCTGAACCTCAATGG 60.746 60.000 0.00 0.00 42.93 3.16
1745 1812 0.250234 TCCCTCGCTGAACCTCAATG 59.750 55.000 0.00 0.00 0.00 2.82
1746 1813 0.539051 CTCCCTCGCTGAACCTCAAT 59.461 55.000 0.00 0.00 0.00 2.57
1752 1819 1.448717 GAAGCCTCCCTCGCTGAAC 60.449 63.158 0.00 0.00 36.47 3.18
1756 1823 0.755686 CATAAGAAGCCTCCCTCGCT 59.244 55.000 0.00 0.00 38.53 4.93
1758 1825 1.757118 TCACATAAGAAGCCTCCCTCG 59.243 52.381 0.00 0.00 0.00 4.63
1831 1901 0.583438 CAGGCCAATGCTAATCGTCG 59.417 55.000 5.01 0.00 37.74 5.12
1848 1918 0.966920 ATCCGGGGCGTTATCTACAG 59.033 55.000 0.00 0.00 0.00 2.74
1873 1943 2.673368 GACTCAACTTCATTACGCCCAG 59.327 50.000 0.00 0.00 0.00 4.45
1880 1950 4.625324 CGGGATTGGGACTCAACTTCATTA 60.625 45.833 0.00 0.00 38.31 1.90
1902 1972 0.320374 TCCAACTCCAACCTAGTGCG 59.680 55.000 0.00 0.00 0.00 5.34
1910 1980 6.625081 GCATAGTATTTTGGTCCAACTCCAAC 60.625 42.308 2.98 0.00 43.45 3.77
1924 1994 7.123247 AGCTTTTGGTGAGATGCATAGTATTTT 59.877 33.333 0.00 0.00 0.00 1.82
1942 2012 7.331687 CCAAATGGTAAATGTTCTAGCTTTTGG 59.668 37.037 17.55 17.55 45.45 3.28
2019 2089 6.641169 TGTACATTGTGCACTTCCAAATAA 57.359 33.333 19.41 1.00 0.00 1.40
2039 2109 9.557338 GTATTTGCGTGGTTTATATTTGTTGTA 57.443 29.630 0.00 0.00 0.00 2.41
2048 2118 3.310227 CGGCTGTATTTGCGTGGTTTATA 59.690 43.478 0.00 0.00 0.00 0.98
2050 2120 1.465387 CGGCTGTATTTGCGTGGTTTA 59.535 47.619 0.00 0.00 0.00 2.01
2052 2122 0.887387 ACGGCTGTATTTGCGTGGTT 60.887 50.000 0.00 0.00 0.00 3.67
2057 2127 1.062002 CTGGTTACGGCTGTATTTGCG 59.938 52.381 6.15 0.00 0.00 4.85
2067 2137 2.093869 TCTCCATAACACTGGTTACGGC 60.094 50.000 0.00 0.00 41.46 5.68
2068 2138 3.880047 TCTCCATAACACTGGTTACGG 57.120 47.619 0.00 0.00 42.71 4.02
2102 2172 6.790825 GTGTTAGCACGTTACTGAGATTTTTC 59.209 38.462 0.00 0.00 35.75 2.29
2112 2182 3.396260 ACATGGTGTTAGCACGTTACT 57.604 42.857 3.46 0.00 46.13 2.24
2113 2183 3.120442 GGAACATGGTGTTAGCACGTTAC 60.120 47.826 3.46 0.07 46.13 2.50
2118 2188 3.412386 AGAAGGAACATGGTGTTAGCAC 58.588 45.455 0.27 0.27 41.28 4.40
2124 2194 2.631062 TCGTGTAGAAGGAACATGGTGT 59.369 45.455 0.00 0.00 35.10 4.16
2125 2195 3.313012 TCGTGTAGAAGGAACATGGTG 57.687 47.619 0.00 0.00 35.10 4.17
2150 2220 1.269361 GGTGCCTTGTTTTGGTAACCG 60.269 52.381 0.00 0.00 0.00 4.44
2165 2235 1.486211 TCTTGTAGCTCTAGGGTGCC 58.514 55.000 0.00 0.00 32.98 5.01
2166 2236 3.611766 TTTCTTGTAGCTCTAGGGTGC 57.388 47.619 0.00 0.00 0.00 5.01
2244 2314 1.361668 CGACAGGAAGGGTTGCATCG 61.362 60.000 0.00 0.00 0.00 3.84
2245 2315 0.036388 TCGACAGGAAGGGTTGCATC 60.036 55.000 0.00 0.00 0.00 3.91
2270 2340 3.069586 TGTGAGACTAGTTTGTGGGACTG 59.930 47.826 0.00 0.00 0.00 3.51
2283 2353 3.840991 AGGTGGTTACACTGTGAGACTA 58.159 45.455 15.86 7.45 46.85 2.59
2287 2357 4.557205 GTTCTAGGTGGTTACACTGTGAG 58.443 47.826 15.86 0.00 46.85 3.51
2293 2363 4.546829 TGATGGTTCTAGGTGGTTACAC 57.453 45.455 0.00 0.00 46.97 2.90
2297 2367 2.308570 TGCATGATGGTTCTAGGTGGTT 59.691 45.455 0.00 0.00 0.00 3.67
2319 2389 1.369091 AATGGGAGCGTTGATGCGAC 61.369 55.000 0.00 0.00 40.67 5.19
2321 2391 1.353103 GAATGGGAGCGTTGATGCG 59.647 57.895 0.00 0.00 40.67 4.73
2404 2474 3.057104 TCCGCCTATATACATGTGGAACG 60.057 47.826 9.11 3.23 42.39 3.95
2406 2476 3.056107 GCTCCGCCTATATACATGTGGAA 60.056 47.826 9.11 0.00 36.98 3.53
2408 2478 2.233676 TGCTCCGCCTATATACATGTGG 59.766 50.000 9.11 1.13 0.00 4.17
2421 2491 0.320247 CTACTCCATCATGCTCCGCC 60.320 60.000 0.00 0.00 0.00 6.13
2422 2492 0.320247 CCTACTCCATCATGCTCCGC 60.320 60.000 0.00 0.00 0.00 5.54
2423 2493 0.320247 GCCTACTCCATCATGCTCCG 60.320 60.000 0.00 0.00 0.00 4.63
2424 2494 0.036022 GGCCTACTCCATCATGCTCC 59.964 60.000 0.00 0.00 0.00 4.70
2428 2498 1.135094 ACCTGGCCTACTCCATCATG 58.865 55.000 3.32 0.00 35.22 3.07
2436 2506 1.152118 TCACCACACCTGGCCTACT 60.152 57.895 3.32 0.00 42.08 2.57
2438 2508 1.152118 AGTCACCACACCTGGCCTA 60.152 57.895 3.32 0.00 42.08 3.93
2447 2517 0.469494 ATCAGTGTGCAGTCACCACA 59.531 50.000 7.10 0.00 42.46 4.17
2448 2518 1.265095 CAATCAGTGTGCAGTCACCAC 59.735 52.381 3.96 0.21 42.46 4.16
2449 2519 1.596603 CAATCAGTGTGCAGTCACCA 58.403 50.000 3.96 0.00 42.46 4.17
2476 2546 4.791069 TCCTCCTACCGGCCCCAC 62.791 72.222 0.00 0.00 0.00 4.61
2482 2552 3.537874 CCGCCTTCCTCCTACCGG 61.538 72.222 0.00 0.00 0.00 5.28
2485 2555 1.516423 GTCACCGCCTTCCTCCTAC 59.484 63.158 0.00 0.00 0.00 3.18
2494 2564 0.600255 CTTTCTTGTCGTCACCGCCT 60.600 55.000 0.00 0.00 0.00 5.52
2495 2565 0.878961 ACTTTCTTGTCGTCACCGCC 60.879 55.000 0.00 0.00 0.00 6.13
2498 2568 1.226746 CCCACTTTCTTGTCGTCACC 58.773 55.000 0.00 0.00 0.00 4.02
2518 2588 4.396478 GCTCGATGTACTCATGGATAGCTA 59.604 45.833 0.00 0.00 37.94 3.32
2519 2589 3.192422 GCTCGATGTACTCATGGATAGCT 59.808 47.826 0.00 0.00 37.94 3.32
2529 2599 4.336993 CCCCATAGATAGCTCGATGTACTC 59.663 50.000 0.00 0.00 33.91 2.59
2564 2634 1.535015 GCCTTCTCGATCTTCCGTCAG 60.535 57.143 0.00 0.00 0.00 3.51
2566 2636 0.249114 GGCCTTCTCGATCTTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
2576 2646 3.571828 TCTCTATCATCTTGGCCTTCTCG 59.428 47.826 3.32 0.00 0.00 4.04
2581 2651 3.141838 TCCTCTCTCTATCATCTTGGCCT 59.858 47.826 3.32 0.00 0.00 5.19
2584 2654 7.441760 CACAATTTCCTCTCTCTATCATCTTGG 59.558 40.741 0.00 0.00 0.00 3.61
2585 2655 7.986320 ACACAATTTCCTCTCTCTATCATCTTG 59.014 37.037 0.00 0.00 0.00 3.02
2623 2693 6.582295 CACACAACAAATGCATTAAGTACTCC 59.418 38.462 13.39 0.00 0.00 3.85
2645 2715 3.579335 TTCGATATTGTCACGTCCACA 57.421 42.857 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.