Multiple sequence alignment - TraesCS6B01G395500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G395500 chr6B 100.000 2790 0 0 1 2790 671128197 671130986 0.000000e+00 5153
1 TraesCS6B01G395500 chr6B 98.604 1289 14 3 1020 2305 708220999 708222286 0.000000e+00 2278
2 TraesCS6B01G395500 chr6B 94.479 1304 56 5 1020 2310 118026320 118027620 0.000000e+00 1995
3 TraesCS6B01G395500 chr6B 98.093 944 12 2 1 939 708219793 708220735 0.000000e+00 1639
4 TraesCS6B01G395500 chr6B 94.935 1007 45 2 1 1001 118024573 118025579 0.000000e+00 1572
5 TraesCS6B01G395500 chr3B 96.046 1315 25 7 1020 2308 283638918 283640231 0.000000e+00 2115
6 TraesCS6B01G395500 chr3B 96.841 918 23 2 1 912 283637712 283638629 0.000000e+00 1530
7 TraesCS6B01G395500 chr3B 97.536 487 11 1 2305 2790 636967961 636968447 0.000000e+00 832
8 TraesCS6B01G395500 chr5B 94.785 1304 49 6 1020 2305 382535472 382536774 0.000000e+00 2013
9 TraesCS6B01G395500 chr5B 97.500 480 12 0 2311 2790 537675848 537675369 0.000000e+00 821
10 TraesCS6B01G395500 chr5B 91.211 512 29 8 1817 2312 680364484 680363973 0.000000e+00 682
11 TraesCS6B01G395500 chr7A 94.555 1304 40 8 1020 2305 674509572 674508282 0.000000e+00 1986
12 TraesCS6B01G395500 chr7A 97.217 1006 23 1 1 1001 674511325 674510320 0.000000e+00 1698
13 TraesCS6B01G395500 chr2D 94.015 1320 40 15 1020 2312 518250167 518251474 0.000000e+00 1964
14 TraesCS6B01G395500 chr2D 95.821 1005 36 2 1 999 518214579 518215583 0.000000e+00 1618
15 TraesCS6B01G395500 chr5A 93.636 1320 45 16 1020 2316 676353840 676355143 0.000000e+00 1936
16 TraesCS6B01G395500 chr5A 96.028 1007 34 2 1 1001 676352088 676353094 0.000000e+00 1633
17 TraesCS6B01G395500 chr4A 98.171 1039 18 1 1020 2057 690356938 690357976 0.000000e+00 1812
18 TraesCS6B01G395500 chr4A 97.813 1006 17 1 1 1001 690355184 690356189 0.000000e+00 1731
19 TraesCS6B01G395500 chr7D 89.703 1311 100 16 1020 2301 118903078 118901774 0.000000e+00 1640
20 TraesCS6B01G395500 chr7D 93.295 1044 59 6 1020 2057 58620855 58621893 0.000000e+00 1530
21 TraesCS6B01G395500 chr7D 93.214 280 14 5 2029 2304 58621902 58622180 9.300000e-110 407
22 TraesCS6B01G395500 chrUn 95.825 1006 36 2 1 1001 50576246 50577250 0.000000e+00 1620
23 TraesCS6B01G395500 chr3A 89.220 1308 114 20 1021 2312 561400008 561401304 0.000000e+00 1609
24 TraesCS6B01G395500 chr1B 95.522 1005 38 3 1 999 638557424 638556421 0.000000e+00 1600
25 TraesCS6B01G395500 chr1B 97.727 484 11 0 2305 2788 97192319 97191836 0.000000e+00 833
26 TraesCS6B01G395500 chr4B 97.942 486 10 0 2305 2790 612294469 612293984 0.000000e+00 843
27 TraesCS6B01G395500 chr4B 97.531 486 12 0 2305 2790 82134605 82135090 0.000000e+00 832
28 TraesCS6B01G395500 chr4B 97.325 486 13 0 2305 2790 82125821 82126306 0.000000e+00 826
29 TraesCS6B01G395500 chr4B 97.325 486 13 0 2305 2790 122486024 122485539 0.000000e+00 826
30 TraesCS6B01G395500 chr4B 97.119 486 14 0 2305 2790 82119098 82119583 0.000000e+00 821
31 TraesCS6B01G395500 chr2B 97.531 486 12 0 2305 2790 656716078 656716563 0.000000e+00 832


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G395500 chr6B 671128197 671130986 2789 False 5153.0 5153 100.0000 1 2790 1 chr6B.!!$F1 2789
1 TraesCS6B01G395500 chr6B 708219793 708222286 2493 False 1958.5 2278 98.3485 1 2305 2 chr6B.!!$F3 2304
2 TraesCS6B01G395500 chr6B 118024573 118027620 3047 False 1783.5 1995 94.7070 1 2310 2 chr6B.!!$F2 2309
3 TraesCS6B01G395500 chr3B 283637712 283640231 2519 False 1822.5 2115 96.4435 1 2308 2 chr3B.!!$F2 2307
4 TraesCS6B01G395500 chr5B 382535472 382536774 1302 False 2013.0 2013 94.7850 1020 2305 1 chr5B.!!$F1 1285
5 TraesCS6B01G395500 chr5B 680363973 680364484 511 True 682.0 682 91.2110 1817 2312 1 chr5B.!!$R2 495
6 TraesCS6B01G395500 chr7A 674508282 674511325 3043 True 1842.0 1986 95.8860 1 2305 2 chr7A.!!$R1 2304
7 TraesCS6B01G395500 chr2D 518250167 518251474 1307 False 1964.0 1964 94.0150 1020 2312 1 chr2D.!!$F2 1292
8 TraesCS6B01G395500 chr2D 518214579 518215583 1004 False 1618.0 1618 95.8210 1 999 1 chr2D.!!$F1 998
9 TraesCS6B01G395500 chr5A 676352088 676355143 3055 False 1784.5 1936 94.8320 1 2316 2 chr5A.!!$F1 2315
10 TraesCS6B01G395500 chr4A 690355184 690357976 2792 False 1771.5 1812 97.9920 1 2057 2 chr4A.!!$F1 2056
11 TraesCS6B01G395500 chr7D 118901774 118903078 1304 True 1640.0 1640 89.7030 1020 2301 1 chr7D.!!$R1 1281
12 TraesCS6B01G395500 chr7D 58620855 58622180 1325 False 968.5 1530 93.2545 1020 2304 2 chr7D.!!$F1 1284
13 TraesCS6B01G395500 chrUn 50576246 50577250 1004 False 1620.0 1620 95.8250 1 1001 1 chrUn.!!$F1 1000
14 TraesCS6B01G395500 chr3A 561400008 561401304 1296 False 1609.0 1609 89.2200 1021 2312 1 chr3A.!!$F1 1291
15 TraesCS6B01G395500 chr1B 638556421 638557424 1003 True 1600.0 1600 95.5220 1 999 1 chr1B.!!$R2 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 567 1.749033 CTTCTATCACCCCTCCCGC 59.251 63.158 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 3146 0.105224 TCCCTTTTTGTGTCGAGCGA 59.895 50.0 0.0 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.603237 TGTACCAATGCTCTGAATAATTCG 57.397 37.500 0.00 0.00 0.00 3.34
565 567 1.749033 CTTCTATCACCCCTCCCGC 59.251 63.158 0.00 0.00 0.00 6.13
838 845 3.119101 GGGTATGACTCTTTCTCTTCGCA 60.119 47.826 0.00 0.00 0.00 5.10
1009 1331 0.178935 AACAACCCCAATGGACCTGG 60.179 55.000 0.00 0.00 38.00 4.45
1011 1333 0.336048 CAACCCCAATGGACCTGGAT 59.664 55.000 0.00 0.00 35.85 3.41
1012 1334 1.092549 AACCCCAATGGACCTGGATT 58.907 50.000 0.00 0.00 35.85 3.01
1014 1336 1.007118 ACCCCAATGGACCTGGATTTC 59.993 52.381 0.00 0.00 35.85 2.17
1015 1337 1.288932 CCCCAATGGACCTGGATTTCT 59.711 52.381 0.00 0.00 35.85 2.52
1016 1338 2.513738 CCCCAATGGACCTGGATTTCTA 59.486 50.000 0.00 0.00 35.85 2.10
1017 1339 3.140895 CCCCAATGGACCTGGATTTCTAT 59.859 47.826 0.00 0.00 35.85 1.98
1247 1987 4.280436 AGAACATGGTGTCGGTTGATAA 57.720 40.909 0.00 0.00 0.00 1.75
1295 2035 7.229106 TGTGGAGGTACTTAACACCAAATTTAC 59.771 37.037 9.01 0.00 41.55 2.01
2312 3144 2.159382 CCAAACACAGCGTTAGGGATT 58.841 47.619 0.00 0.00 36.59 3.01
2313 3145 3.008157 TCCAAACACAGCGTTAGGGATTA 59.992 43.478 0.00 0.00 36.68 1.75
2314 3146 3.945285 CCAAACACAGCGTTAGGGATTAT 59.055 43.478 0.00 0.00 36.59 1.28
2315 3147 4.035208 CCAAACACAGCGTTAGGGATTATC 59.965 45.833 0.00 0.00 36.59 1.75
2316 3148 3.093717 ACACAGCGTTAGGGATTATCG 57.906 47.619 0.00 0.00 0.00 2.92
2317 3149 1.792949 CACAGCGTTAGGGATTATCGC 59.207 52.381 0.68 0.68 46.04 4.58
2320 3152 1.337821 GCGTTAGGGATTATCGCTCG 58.662 55.000 15.04 14.04 43.65 5.03
2321 3153 1.068748 GCGTTAGGGATTATCGCTCGA 60.069 52.381 15.04 3.43 43.65 4.04
2322 3154 2.582687 CGTTAGGGATTATCGCTCGAC 58.417 52.381 15.04 13.45 40.36 4.20
2323 3155 2.031420 CGTTAGGGATTATCGCTCGACA 60.031 50.000 15.04 0.00 40.36 4.35
2324 3156 3.306818 GTTAGGGATTATCGCTCGACAC 58.693 50.000 15.04 5.33 40.36 3.67
2325 3157 1.399714 AGGGATTATCGCTCGACACA 58.600 50.000 5.94 0.00 34.27 3.72
2326 3158 1.754803 AGGGATTATCGCTCGACACAA 59.245 47.619 5.94 0.00 34.27 3.33
2327 3159 2.167693 AGGGATTATCGCTCGACACAAA 59.832 45.455 5.94 0.00 34.27 2.83
2328 3160 2.933906 GGGATTATCGCTCGACACAAAA 59.066 45.455 1.83 0.00 0.00 2.44
2329 3161 3.372822 GGGATTATCGCTCGACACAAAAA 59.627 43.478 1.83 0.00 0.00 1.94
2330 3162 4.494199 GGGATTATCGCTCGACACAAAAAG 60.494 45.833 1.83 0.00 0.00 2.27
2331 3163 4.494199 GGATTATCGCTCGACACAAAAAGG 60.494 45.833 0.00 0.00 0.00 3.11
2332 3164 1.156736 ATCGCTCGACACAAAAAGGG 58.843 50.000 0.00 0.00 0.00 3.95
2333 3165 0.105224 TCGCTCGACACAAAAAGGGA 59.895 50.000 0.00 0.00 0.00 4.20
2334 3166 0.941542 CGCTCGACACAAAAAGGGAA 59.058 50.000 0.00 0.00 0.00 3.97
2335 3167 1.332375 CGCTCGACACAAAAAGGGAAA 59.668 47.619 0.00 0.00 0.00 3.13
2336 3168 2.727777 GCTCGACACAAAAAGGGAAAC 58.272 47.619 0.00 0.00 0.00 2.78
2337 3169 2.357952 GCTCGACACAAAAAGGGAAACT 59.642 45.455 0.00 0.00 0.00 2.66
2338 3170 3.562557 GCTCGACACAAAAAGGGAAACTA 59.437 43.478 0.00 0.00 0.00 2.24
2339 3171 4.215613 GCTCGACACAAAAAGGGAAACTAT 59.784 41.667 0.00 0.00 0.00 2.12
2340 3172 5.278315 GCTCGACACAAAAAGGGAAACTATT 60.278 40.000 0.00 0.00 0.00 1.73
2341 3173 6.072893 GCTCGACACAAAAAGGGAAACTATTA 60.073 38.462 0.00 0.00 0.00 0.98
2342 3174 7.361799 GCTCGACACAAAAAGGGAAACTATTAT 60.362 37.037 0.00 0.00 0.00 1.28
2343 3175 7.812648 TCGACACAAAAAGGGAAACTATTATG 58.187 34.615 0.00 0.00 0.00 1.90
2344 3176 7.027161 CGACACAAAAAGGGAAACTATTATGG 58.973 38.462 0.00 0.00 0.00 2.74
2345 3177 7.239763 ACACAAAAAGGGAAACTATTATGGG 57.760 36.000 0.00 0.00 0.00 4.00
2346 3178 7.013834 ACACAAAAAGGGAAACTATTATGGGA 58.986 34.615 0.00 0.00 0.00 4.37
2347 3179 7.678171 ACACAAAAAGGGAAACTATTATGGGAT 59.322 33.333 0.00 0.00 0.00 3.85
2348 3180 8.197439 CACAAAAAGGGAAACTATTATGGGATC 58.803 37.037 0.00 0.00 0.00 3.36
2349 3181 7.898636 ACAAAAAGGGAAACTATTATGGGATCA 59.101 33.333 0.00 0.00 0.00 2.92
2350 3182 8.757877 CAAAAAGGGAAACTATTATGGGATCAA 58.242 33.333 0.00 0.00 0.00 2.57
2351 3183 9.506042 AAAAAGGGAAACTATTATGGGATCAAT 57.494 29.630 0.00 0.00 0.00 2.57
2352 3184 9.506042 AAAAGGGAAACTATTATGGGATCAATT 57.494 29.630 0.00 0.00 0.00 2.32
2353 3185 9.506042 AAAGGGAAACTATTATGGGATCAATTT 57.494 29.630 0.00 0.00 0.00 1.82
2367 3199 8.417780 TGGGATCAATTTATTATTTTGCGTTG 57.582 30.769 0.00 0.00 0.00 4.10
2368 3200 7.493971 TGGGATCAATTTATTATTTTGCGTTGG 59.506 33.333 0.00 0.00 0.00 3.77
2369 3201 7.494298 GGGATCAATTTATTATTTTGCGTTGGT 59.506 33.333 0.00 0.00 0.00 3.67
2370 3202 9.522804 GGATCAATTTATTATTTTGCGTTGGTA 57.477 29.630 0.00 0.00 0.00 3.25
2373 3205 8.812329 TCAATTTATTATTTTGCGTTGGTATGC 58.188 29.630 0.00 0.00 36.80 3.14
2374 3206 8.816144 CAATTTATTATTTTGCGTTGGTATGCT 58.184 29.630 0.00 0.00 37.19 3.79
2375 3207 7.979115 TTTATTATTTTGCGTTGGTATGCTC 57.021 32.000 0.00 0.00 37.19 4.26
2376 3208 2.542766 ATTTTGCGTTGGTATGCTCG 57.457 45.000 0.00 0.00 37.19 5.03
2378 3210 1.917782 TTTGCGTTGGTATGCTCGCC 61.918 55.000 13.04 0.00 46.57 5.54
2379 3211 2.817834 GCGTTGGTATGCTCGCCA 60.818 61.111 0.00 0.00 42.33 5.69
2380 3212 2.395360 GCGTTGGTATGCTCGCCAA 61.395 57.895 0.00 3.04 42.33 4.52
2385 3217 2.238942 TGGTATGCTCGCCAACTATG 57.761 50.000 0.00 0.00 0.00 2.23
2386 3218 0.868406 GGTATGCTCGCCAACTATGC 59.132 55.000 0.00 0.00 0.00 3.14
2393 3225 1.010797 CGCCAACTATGCGTGATGC 60.011 57.895 0.00 0.00 46.59 3.91
2407 3239 5.348418 GCGTGATGCATGATTATACTTGT 57.652 39.130 2.46 0.00 45.45 3.16
2408 3240 5.751680 GCGTGATGCATGATTATACTTGTT 58.248 37.500 2.46 0.00 45.45 2.83
2409 3241 5.622448 GCGTGATGCATGATTATACTTGTTG 59.378 40.000 2.46 0.00 45.45 3.33
2410 3242 5.622448 CGTGATGCATGATTATACTTGTTGC 59.378 40.000 2.46 0.00 0.00 4.17
2411 3243 6.512253 CGTGATGCATGATTATACTTGTTGCT 60.512 38.462 2.46 0.00 0.00 3.91
2412 3244 6.854892 GTGATGCATGATTATACTTGTTGCTC 59.145 38.462 2.46 0.00 0.00 4.26
2413 3245 6.769341 TGATGCATGATTATACTTGTTGCTCT 59.231 34.615 2.46 0.00 0.00 4.09
2414 3246 7.933033 TGATGCATGATTATACTTGTTGCTCTA 59.067 33.333 2.46 0.00 0.00 2.43
2415 3247 7.719778 TGCATGATTATACTTGTTGCTCTAG 57.280 36.000 0.00 0.00 0.00 2.43
2416 3248 6.707608 TGCATGATTATACTTGTTGCTCTAGG 59.292 38.462 0.00 0.00 0.00 3.02
2417 3249 6.931281 GCATGATTATACTTGTTGCTCTAGGA 59.069 38.462 0.00 0.00 0.00 2.94
2418 3250 7.605691 GCATGATTATACTTGTTGCTCTAGGAT 59.394 37.037 0.00 0.00 0.00 3.24
2419 3251 8.933807 CATGATTATACTTGTTGCTCTAGGATG 58.066 37.037 0.00 0.00 0.00 3.51
2420 3252 8.250143 TGATTATACTTGTTGCTCTAGGATGA 57.750 34.615 0.00 0.00 0.00 2.92
2421 3253 8.704668 TGATTATACTTGTTGCTCTAGGATGAA 58.295 33.333 0.00 0.00 0.00 2.57
2422 3254 9.202273 GATTATACTTGTTGCTCTAGGATGAAG 57.798 37.037 0.00 0.00 0.00 3.02
2423 3255 4.213564 ACTTGTTGCTCTAGGATGAAGG 57.786 45.455 0.00 0.00 0.00 3.46
2424 3256 3.840666 ACTTGTTGCTCTAGGATGAAGGA 59.159 43.478 0.00 0.00 0.00 3.36
2425 3257 4.472833 ACTTGTTGCTCTAGGATGAAGGAT 59.527 41.667 0.00 0.00 0.00 3.24
2426 3258 4.679373 TGTTGCTCTAGGATGAAGGATC 57.321 45.455 0.00 0.00 0.00 3.36
2440 3272 3.833559 AAGGATCCACACCTTCCATTT 57.166 42.857 15.82 0.00 43.22 2.32
2441 3273 3.833559 AGGATCCACACCTTCCATTTT 57.166 42.857 15.82 0.00 33.55 1.82
2442 3274 3.701664 AGGATCCACACCTTCCATTTTC 58.298 45.455 15.82 0.00 33.55 2.29
2443 3275 3.075882 AGGATCCACACCTTCCATTTTCA 59.924 43.478 15.82 0.00 33.55 2.69
2444 3276 4.026052 GGATCCACACCTTCCATTTTCAT 58.974 43.478 6.95 0.00 0.00 2.57
2445 3277 4.142093 GGATCCACACCTTCCATTTTCATG 60.142 45.833 6.95 0.00 0.00 3.07
2446 3278 2.562298 TCCACACCTTCCATTTTCATGC 59.438 45.455 0.00 0.00 0.00 4.06
2447 3279 2.299582 CCACACCTTCCATTTTCATGCA 59.700 45.455 0.00 0.00 0.00 3.96
2448 3280 3.244146 CCACACCTTCCATTTTCATGCAA 60.244 43.478 0.00 0.00 0.00 4.08
2449 3281 4.378774 CACACCTTCCATTTTCATGCAAA 58.621 39.130 0.00 0.00 0.00 3.68
2450 3282 4.998672 CACACCTTCCATTTTCATGCAAAT 59.001 37.500 0.00 0.00 0.00 2.32
2451 3283 5.470777 CACACCTTCCATTTTCATGCAAATT 59.529 36.000 0.17 0.00 0.00 1.82
2452 3284 5.702209 ACACCTTCCATTTTCATGCAAATTC 59.298 36.000 0.17 0.00 0.00 2.17
2453 3285 5.701750 CACCTTCCATTTTCATGCAAATTCA 59.298 36.000 0.17 0.00 0.00 2.57
2454 3286 6.205076 CACCTTCCATTTTCATGCAAATTCAA 59.795 34.615 0.17 0.00 0.00 2.69
2455 3287 6.943718 ACCTTCCATTTTCATGCAAATTCAAT 59.056 30.769 0.17 0.00 0.00 2.57
2456 3288 7.094549 ACCTTCCATTTTCATGCAAATTCAATG 60.095 33.333 0.17 0.00 0.00 2.82
2457 3289 7.119992 CCTTCCATTTTCATGCAAATTCAATGA 59.880 33.333 0.17 0.00 0.00 2.57
2458 3290 8.568676 TTCCATTTTCATGCAAATTCAATGAT 57.431 26.923 0.17 0.00 0.00 2.45
2459 3291 9.668497 TTCCATTTTCATGCAAATTCAATGATA 57.332 25.926 0.17 0.00 0.00 2.15
2460 3292 9.668497 TCCATTTTCATGCAAATTCAATGATAA 57.332 25.926 0.17 0.00 0.00 1.75
2496 3328 9.040259 AGCTTCTTATGCTAATGGTAGATATGA 57.960 33.333 0.00 0.00 39.21 2.15
2497 3329 9.829507 GCTTCTTATGCTAATGGTAGATATGAT 57.170 33.333 0.00 0.00 0.00 2.45
2541 3373 9.657419 AATAGAAGAATTTGTTGCTTTTATGGG 57.343 29.630 0.00 0.00 0.00 4.00
2542 3374 7.066307 AGAAGAATTTGTTGCTTTTATGGGT 57.934 32.000 0.00 0.00 0.00 4.51
2543 3375 6.930722 AGAAGAATTTGTTGCTTTTATGGGTG 59.069 34.615 0.00 0.00 0.00 4.61
2544 3376 4.996758 AGAATTTGTTGCTTTTATGGGTGC 59.003 37.500 0.00 0.00 0.00 5.01
2545 3377 4.622260 ATTTGTTGCTTTTATGGGTGCT 57.378 36.364 0.00 0.00 0.00 4.40
2546 3378 4.414337 TTTGTTGCTTTTATGGGTGCTT 57.586 36.364 0.00 0.00 0.00 3.91
2547 3379 5.537300 TTTGTTGCTTTTATGGGTGCTTA 57.463 34.783 0.00 0.00 0.00 3.09
2548 3380 5.736951 TTGTTGCTTTTATGGGTGCTTAT 57.263 34.783 0.00 0.00 0.00 1.73
2549 3381 5.070770 TGTTGCTTTTATGGGTGCTTATG 57.929 39.130 0.00 0.00 0.00 1.90
2550 3382 4.769488 TGTTGCTTTTATGGGTGCTTATGA 59.231 37.500 0.00 0.00 0.00 2.15
2551 3383 5.105797 TGTTGCTTTTATGGGTGCTTATGAG 60.106 40.000 0.00 0.00 0.00 2.90
2552 3384 4.854173 TGCTTTTATGGGTGCTTATGAGA 58.146 39.130 0.00 0.00 0.00 3.27
2553 3385 5.448654 TGCTTTTATGGGTGCTTATGAGAT 58.551 37.500 0.00 0.00 0.00 2.75
2554 3386 5.893255 TGCTTTTATGGGTGCTTATGAGATT 59.107 36.000 0.00 0.00 0.00 2.40
2555 3387 6.183360 TGCTTTTATGGGTGCTTATGAGATTG 60.183 38.462 0.00 0.00 0.00 2.67
2556 3388 6.039717 GCTTTTATGGGTGCTTATGAGATTGA 59.960 38.462 0.00 0.00 0.00 2.57
2557 3389 7.416664 GCTTTTATGGGTGCTTATGAGATTGAA 60.417 37.037 0.00 0.00 0.00 2.69
2558 3390 8.537728 TTTTATGGGTGCTTATGAGATTGAAT 57.462 30.769 0.00 0.00 0.00 2.57
2559 3391 7.750229 TTATGGGTGCTTATGAGATTGAATC 57.250 36.000 0.00 0.00 0.00 2.52
2560 3392 5.378230 TGGGTGCTTATGAGATTGAATCT 57.622 39.130 7.53 7.53 43.70 2.40
2561 3393 6.499106 TGGGTGCTTATGAGATTGAATCTA 57.501 37.500 7.82 0.00 40.38 1.98
2562 3394 7.083062 TGGGTGCTTATGAGATTGAATCTAT 57.917 36.000 7.82 5.27 40.38 1.98
2563 3395 6.938596 TGGGTGCTTATGAGATTGAATCTATG 59.061 38.462 7.82 0.00 40.38 2.23
2564 3396 6.939163 GGGTGCTTATGAGATTGAATCTATGT 59.061 38.462 7.82 0.11 40.38 2.29
2565 3397 7.446625 GGGTGCTTATGAGATTGAATCTATGTT 59.553 37.037 7.82 0.00 40.38 2.71
2566 3398 8.844244 GGTGCTTATGAGATTGAATCTATGTTT 58.156 33.333 7.82 0.00 40.38 2.83
2587 3419 9.768662 ATGTTTAAAGCTTTTGATGACTTTGAT 57.231 25.926 18.47 0.00 34.39 2.57
2588 3420 9.033481 TGTTTAAAGCTTTTGATGACTTTGATG 57.967 29.630 18.47 0.00 34.39 3.07
2589 3421 9.248291 GTTTAAAGCTTTTGATGACTTTGATGA 57.752 29.630 18.47 0.00 34.39 2.92
2590 3422 9.985730 TTTAAAGCTTTTGATGACTTTGATGAT 57.014 25.926 18.47 0.00 34.39 2.45
2591 3423 9.985730 TTAAAGCTTTTGATGACTTTGATGATT 57.014 25.926 18.47 0.00 34.39 2.57
2593 3425 9.985730 AAAGCTTTTGATGACTTTGATGATTAA 57.014 25.926 5.69 0.00 31.41 1.40
2594 3426 9.635520 AAGCTTTTGATGACTTTGATGATTAAG 57.364 29.630 0.00 0.00 0.00 1.85
2595 3427 8.800332 AGCTTTTGATGACTTTGATGATTAAGT 58.200 29.630 0.00 0.00 37.31 2.24
2596 3428 9.415544 GCTTTTGATGACTTTGATGATTAAGTT 57.584 29.630 0.00 0.00 34.88 2.66
2604 3436 8.999431 TGACTTTGATGATTAAGTTTGTAGACC 58.001 33.333 0.00 0.00 34.88 3.85
2605 3437 9.220767 GACTTTGATGATTAAGTTTGTAGACCT 57.779 33.333 0.00 0.00 34.88 3.85
2606 3438 9.003658 ACTTTGATGATTAAGTTTGTAGACCTG 57.996 33.333 0.00 0.00 30.72 4.00
2607 3439 9.219603 CTTTGATGATTAAGTTTGTAGACCTGA 57.780 33.333 0.00 0.00 0.00 3.86
2608 3440 9.567776 TTTGATGATTAAGTTTGTAGACCTGAA 57.432 29.630 0.00 0.00 0.00 3.02
2609 3441 9.567776 TTGATGATTAAGTTTGTAGACCTGAAA 57.432 29.630 0.00 0.00 0.00 2.69
2610 3442 9.567776 TGATGATTAAGTTTGTAGACCTGAAAA 57.432 29.630 0.00 0.00 0.00 2.29
2617 3449 8.465273 AAGTTTGTAGACCTGAAAATTTAGCT 57.535 30.769 0.00 0.00 0.00 3.32
2618 3450 9.569122 AAGTTTGTAGACCTGAAAATTTAGCTA 57.431 29.630 0.00 0.00 0.00 3.32
2619 3451 9.740710 AGTTTGTAGACCTGAAAATTTAGCTAT 57.259 29.630 0.00 0.00 0.00 2.97
2687 3519 7.722949 AATGCTTTTATGAAGGAATTCTCCA 57.277 32.000 5.23 1.73 45.24 3.86
2688 3520 6.515272 TGCTTTTATGAAGGAATTCTCCAC 57.485 37.500 5.23 0.00 45.24 4.02
2689 3521 6.248433 TGCTTTTATGAAGGAATTCTCCACT 58.752 36.000 5.23 0.00 45.24 4.00
2690 3522 6.151648 TGCTTTTATGAAGGAATTCTCCACTG 59.848 38.462 5.23 0.00 45.24 3.66
2691 3523 6.151817 GCTTTTATGAAGGAATTCTCCACTGT 59.848 38.462 5.23 0.00 45.24 3.55
2692 3524 7.627300 GCTTTTATGAAGGAATTCTCCACTGTC 60.627 40.741 5.23 0.00 45.24 3.51
2693 3525 3.703001 TGAAGGAATTCTCCACTGTCC 57.297 47.619 5.23 0.00 45.24 4.02
2694 3526 2.978978 TGAAGGAATTCTCCACTGTCCA 59.021 45.455 5.23 0.00 45.24 4.02
2695 3527 3.394274 TGAAGGAATTCTCCACTGTCCAA 59.606 43.478 5.23 0.00 45.24 3.53
2696 3528 3.710209 AGGAATTCTCCACTGTCCAAG 57.290 47.619 5.23 0.00 45.24 3.61
2697 3529 3.251484 AGGAATTCTCCACTGTCCAAGA 58.749 45.455 5.23 0.00 45.24 3.02
2698 3530 3.652869 AGGAATTCTCCACTGTCCAAGAA 59.347 43.478 5.23 0.00 45.24 2.52
2699 3531 4.006319 GGAATTCTCCACTGTCCAAGAAG 58.994 47.826 5.23 0.00 41.96 2.85
2700 3532 4.263068 GGAATTCTCCACTGTCCAAGAAGA 60.263 45.833 5.23 0.00 41.96 2.87
2701 3533 4.550076 ATTCTCCACTGTCCAAGAAGAG 57.450 45.455 0.00 0.00 31.75 2.85
2702 3534 3.244887 TCTCCACTGTCCAAGAAGAGA 57.755 47.619 0.00 0.00 36.14 3.10
2703 3535 2.894126 TCTCCACTGTCCAAGAAGAGAC 59.106 50.000 0.00 0.00 34.67 3.36
2704 3536 2.896685 CTCCACTGTCCAAGAAGAGACT 59.103 50.000 0.00 0.00 33.21 3.24
2705 3537 4.082845 CTCCACTGTCCAAGAAGAGACTA 58.917 47.826 0.00 0.00 33.21 2.59
2706 3538 4.480115 TCCACTGTCCAAGAAGAGACTAA 58.520 43.478 0.00 0.00 34.02 2.24
2707 3539 5.087323 TCCACTGTCCAAGAAGAGACTAAT 58.913 41.667 0.00 0.00 34.02 1.73
2708 3540 6.253758 TCCACTGTCCAAGAAGAGACTAATA 58.746 40.000 0.00 0.00 34.02 0.98
2709 3541 6.897966 TCCACTGTCCAAGAAGAGACTAATAT 59.102 38.462 0.00 0.00 34.02 1.28
2710 3542 7.400339 TCCACTGTCCAAGAAGAGACTAATATT 59.600 37.037 0.00 0.00 34.02 1.28
2711 3543 8.043710 CCACTGTCCAAGAAGAGACTAATATTT 58.956 37.037 0.00 0.00 34.02 1.40
2712 3544 9.442047 CACTGTCCAAGAAGAGACTAATATTTT 57.558 33.333 0.00 0.00 34.02 1.82
2713 3545 9.442047 ACTGTCCAAGAAGAGACTAATATTTTG 57.558 33.333 0.00 0.00 34.02 2.44
2714 3546 8.268850 TGTCCAAGAAGAGACTAATATTTTGC 57.731 34.615 0.00 0.00 34.02 3.68
2715 3547 7.882791 TGTCCAAGAAGAGACTAATATTTTGCA 59.117 33.333 0.00 0.00 34.02 4.08
2716 3548 8.394121 GTCCAAGAAGAGACTAATATTTTGCAG 58.606 37.037 0.00 0.00 0.00 4.41
2717 3549 7.554118 TCCAAGAAGAGACTAATATTTTGCAGG 59.446 37.037 0.00 0.00 0.00 4.85
2718 3550 7.554118 CCAAGAAGAGACTAATATTTTGCAGGA 59.446 37.037 0.00 0.00 0.00 3.86
2719 3551 8.950210 CAAGAAGAGACTAATATTTTGCAGGAA 58.050 33.333 0.00 0.00 0.00 3.36
2720 3552 8.729805 AGAAGAGACTAATATTTTGCAGGAAG 57.270 34.615 0.00 0.00 0.00 3.46
2721 3553 6.934048 AGAGACTAATATTTTGCAGGAAGC 57.066 37.500 0.00 0.00 45.96 3.86
2722 3554 6.657875 AGAGACTAATATTTTGCAGGAAGCT 58.342 36.000 0.00 0.00 45.94 3.74
2723 3555 7.796054 AGAGACTAATATTTTGCAGGAAGCTA 58.204 34.615 0.00 0.00 45.94 3.32
2724 3556 8.435982 AGAGACTAATATTTTGCAGGAAGCTAT 58.564 33.333 0.00 0.00 45.94 2.97
2725 3557 8.388484 AGACTAATATTTTGCAGGAAGCTATG 57.612 34.615 0.00 0.00 45.94 2.23
2726 3558 7.446625 AGACTAATATTTTGCAGGAAGCTATGG 59.553 37.037 0.00 0.00 45.94 2.74
2727 3559 7.290061 ACTAATATTTTGCAGGAAGCTATGGA 58.710 34.615 0.00 0.00 45.94 3.41
2728 3560 7.779798 ACTAATATTTTGCAGGAAGCTATGGAA 59.220 33.333 0.00 0.00 45.94 3.53
2729 3561 4.996788 ATTTTGCAGGAAGCTATGGAAG 57.003 40.909 0.00 0.00 45.94 3.46
2730 3562 3.719268 TTTGCAGGAAGCTATGGAAGA 57.281 42.857 0.00 0.00 45.94 2.87
2731 3563 3.719268 TTGCAGGAAGCTATGGAAGAA 57.281 42.857 0.00 0.00 45.94 2.52
2732 3564 3.272574 TGCAGGAAGCTATGGAAGAAG 57.727 47.619 0.00 0.00 45.94 2.85
2733 3565 2.840038 TGCAGGAAGCTATGGAAGAAGA 59.160 45.455 0.00 0.00 45.94 2.87
2734 3566 3.264193 TGCAGGAAGCTATGGAAGAAGAA 59.736 43.478 0.00 0.00 45.94 2.52
2735 3567 4.263462 TGCAGGAAGCTATGGAAGAAGAAA 60.263 41.667 0.00 0.00 45.94 2.52
2736 3568 4.886489 GCAGGAAGCTATGGAAGAAGAAAT 59.114 41.667 0.00 0.00 41.15 2.17
2737 3569 5.359292 GCAGGAAGCTATGGAAGAAGAAATT 59.641 40.000 0.00 0.00 41.15 1.82
2738 3570 6.679884 GCAGGAAGCTATGGAAGAAGAAATTG 60.680 42.308 0.00 0.00 41.15 2.32
2739 3571 6.600822 CAGGAAGCTATGGAAGAAGAAATTGA 59.399 38.462 0.00 0.00 0.00 2.57
2740 3572 7.284944 CAGGAAGCTATGGAAGAAGAAATTGAT 59.715 37.037 0.00 0.00 0.00 2.57
2741 3573 7.284944 AGGAAGCTATGGAAGAAGAAATTGATG 59.715 37.037 0.00 0.00 0.00 3.07
2742 3574 7.284034 GGAAGCTATGGAAGAAGAAATTGATGA 59.716 37.037 0.00 0.00 0.00 2.92
2743 3575 8.585471 AAGCTATGGAAGAAGAAATTGATGAA 57.415 30.769 0.00 0.00 0.00 2.57
2744 3576 8.585471 AGCTATGGAAGAAGAAATTGATGAAA 57.415 30.769 0.00 0.00 0.00 2.69
2745 3577 8.465201 AGCTATGGAAGAAGAAATTGATGAAAC 58.535 33.333 0.00 0.00 0.00 2.78
2746 3578 8.465201 GCTATGGAAGAAGAAATTGATGAAACT 58.535 33.333 0.00 0.00 0.00 2.66
2747 3579 9.784680 CTATGGAAGAAGAAATTGATGAAACTG 57.215 33.333 0.00 0.00 0.00 3.16
2748 3580 7.587037 TGGAAGAAGAAATTGATGAAACTGT 57.413 32.000 0.00 0.00 0.00 3.55
2749 3581 7.428020 TGGAAGAAGAAATTGATGAAACTGTG 58.572 34.615 0.00 0.00 0.00 3.66
2750 3582 7.285172 TGGAAGAAGAAATTGATGAAACTGTGA 59.715 33.333 0.00 0.00 0.00 3.58
2751 3583 7.806960 GGAAGAAGAAATTGATGAAACTGTGAG 59.193 37.037 0.00 0.00 0.00 3.51
2752 3584 6.675987 AGAAGAAATTGATGAAACTGTGAGC 58.324 36.000 0.00 0.00 0.00 4.26
2753 3585 6.489361 AGAAGAAATTGATGAAACTGTGAGCT 59.511 34.615 0.00 0.00 0.00 4.09
2754 3586 6.251655 AGAAATTGATGAAACTGTGAGCTC 57.748 37.500 6.82 6.82 0.00 4.09
2755 3587 5.766670 AGAAATTGATGAAACTGTGAGCTCA 59.233 36.000 13.74 13.74 0.00 4.26
2756 3588 6.433404 AGAAATTGATGAAACTGTGAGCTCAT 59.567 34.615 21.47 2.39 0.00 2.90
2757 3589 6.585695 AATTGATGAAACTGTGAGCTCATT 57.414 33.333 21.47 10.08 0.00 2.57
2758 3590 5.366829 TTGATGAAACTGTGAGCTCATTG 57.633 39.130 21.47 17.40 0.00 2.82
2759 3591 3.754850 TGATGAAACTGTGAGCTCATTGG 59.245 43.478 21.47 14.83 0.00 3.16
2760 3592 3.490439 TGAAACTGTGAGCTCATTGGA 57.510 42.857 21.47 3.66 0.00 3.53
2761 3593 4.025040 TGAAACTGTGAGCTCATTGGAT 57.975 40.909 21.47 6.84 0.00 3.41
2762 3594 3.754850 TGAAACTGTGAGCTCATTGGATG 59.245 43.478 21.47 9.03 0.00 3.51
2763 3595 3.708403 AACTGTGAGCTCATTGGATGA 57.292 42.857 21.47 0.00 37.76 2.92
2764 3596 3.708403 ACTGTGAGCTCATTGGATGAA 57.292 42.857 21.47 0.00 39.11 2.57
2765 3597 4.025040 ACTGTGAGCTCATTGGATGAAA 57.975 40.909 21.47 0.00 39.11 2.69
2766 3598 4.401022 ACTGTGAGCTCATTGGATGAAAA 58.599 39.130 21.47 0.00 39.11 2.29
2767 3599 4.828939 ACTGTGAGCTCATTGGATGAAAAA 59.171 37.500 21.47 0.00 39.11 1.94
2768 3600 5.048224 ACTGTGAGCTCATTGGATGAAAAAG 60.048 40.000 21.47 0.00 39.11 2.27
2769 3601 5.072055 TGTGAGCTCATTGGATGAAAAAGA 58.928 37.500 21.47 0.00 39.11 2.52
2770 3602 5.713389 TGTGAGCTCATTGGATGAAAAAGAT 59.287 36.000 21.47 0.00 39.11 2.40
2771 3603 6.034591 GTGAGCTCATTGGATGAAAAAGATG 58.965 40.000 21.47 0.00 39.11 2.90
2772 3604 5.947566 TGAGCTCATTGGATGAAAAAGATGA 59.052 36.000 13.74 0.00 39.11 2.92
2773 3605 6.605995 TGAGCTCATTGGATGAAAAAGATGAT 59.394 34.615 13.74 0.00 39.11 2.45
2774 3606 6.806751 AGCTCATTGGATGAAAAAGATGATG 58.193 36.000 0.00 0.00 39.11 3.07
2775 3607 6.605995 AGCTCATTGGATGAAAAAGATGATGA 59.394 34.615 0.00 0.00 39.11 2.92
2776 3608 6.918569 GCTCATTGGATGAAAAAGATGATGAG 59.081 38.462 0.00 0.00 39.11 2.90
2777 3609 7.342769 TCATTGGATGAAAAAGATGATGAGG 57.657 36.000 0.00 0.00 36.11 3.86
2778 3610 7.120716 TCATTGGATGAAAAAGATGATGAGGA 58.879 34.615 0.00 0.00 36.11 3.71
2779 3611 7.284716 TCATTGGATGAAAAAGATGATGAGGAG 59.715 37.037 0.00 0.00 36.11 3.69
2780 3612 6.317663 TGGATGAAAAAGATGATGAGGAGA 57.682 37.500 0.00 0.00 0.00 3.71
2781 3613 6.354938 TGGATGAAAAAGATGATGAGGAGAG 58.645 40.000 0.00 0.00 0.00 3.20
2782 3614 5.239087 GGATGAAAAAGATGATGAGGAGAGC 59.761 44.000 0.00 0.00 0.00 4.09
2783 3615 4.186926 TGAAAAAGATGATGAGGAGAGCG 58.813 43.478 0.00 0.00 0.00 5.03
2784 3616 4.081476 TGAAAAAGATGATGAGGAGAGCGA 60.081 41.667 0.00 0.00 0.00 4.93
2785 3617 4.478206 AAAAGATGATGAGGAGAGCGAA 57.522 40.909 0.00 0.00 0.00 4.70
2786 3618 3.731652 AAGATGATGAGGAGAGCGAAG 57.268 47.619 0.00 0.00 0.00 3.79
2787 3619 2.942804 AGATGATGAGGAGAGCGAAGA 58.057 47.619 0.00 0.00 0.00 2.87
2788 3620 3.295093 AGATGATGAGGAGAGCGAAGAA 58.705 45.455 0.00 0.00 0.00 2.52
2789 3621 2.949451 TGATGAGGAGAGCGAAGAAC 57.051 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 202 1.000171 TCATCATCGAAGCATCCGAGG 60.000 52.381 0.00 0.00 39.55 4.63
565 567 6.403636 GCATAACCACTTCCACTTGTAATCAG 60.404 42.308 0.00 0.00 0.00 2.90
1009 1331 6.765036 TGATGCTCAACAAGGAGATAGAAATC 59.235 38.462 0.00 0.00 37.05 2.17
1011 1333 5.877012 GTGATGCTCAACAAGGAGATAGAAA 59.123 40.000 0.00 0.00 37.05 2.52
1012 1334 5.046376 TGTGATGCTCAACAAGGAGATAGAA 60.046 40.000 0.00 0.00 37.05 2.10
1014 1336 4.763073 TGTGATGCTCAACAAGGAGATAG 58.237 43.478 0.00 0.00 37.05 2.08
1015 1337 4.824479 TGTGATGCTCAACAAGGAGATA 57.176 40.909 0.00 0.00 37.05 1.98
1016 1338 3.708403 TGTGATGCTCAACAAGGAGAT 57.292 42.857 0.00 0.00 37.05 2.75
1017 1339 3.141398 GTTGTGATGCTCAACAAGGAGA 58.859 45.455 7.30 0.00 42.94 3.71
1247 1987 5.127845 ACATATCGAGACCACACTTCTTCAT 59.872 40.000 0.00 0.00 0.00 2.57
1342 2087 4.441634 CGTGCTTCCTTATTAGCCTACACT 60.442 45.833 0.00 0.00 36.56 3.55
1960 2718 6.010219 TGGAAAAAGGAAGGATACCAGAAAG 58.990 40.000 0.00 0.00 37.17 2.62
2312 3144 2.028839 TCCCTTTTTGTGTCGAGCGATA 60.029 45.455 0.00 0.00 0.00 2.92
2313 3145 1.156736 CCCTTTTTGTGTCGAGCGAT 58.843 50.000 0.00 0.00 0.00 4.58
2314 3146 0.105224 TCCCTTTTTGTGTCGAGCGA 59.895 50.000 0.00 0.00 0.00 4.93
2315 3147 0.941542 TTCCCTTTTTGTGTCGAGCG 59.058 50.000 0.00 0.00 0.00 5.03
2316 3148 2.357952 AGTTTCCCTTTTTGTGTCGAGC 59.642 45.455 0.00 0.00 0.00 5.03
2317 3149 5.941948 ATAGTTTCCCTTTTTGTGTCGAG 57.058 39.130 0.00 0.00 0.00 4.04
2318 3150 7.094549 CCATAATAGTTTCCCTTTTTGTGTCGA 60.095 37.037 0.00 0.00 0.00 4.20
2319 3151 7.027161 CCATAATAGTTTCCCTTTTTGTGTCG 58.973 38.462 0.00 0.00 0.00 4.35
2320 3152 7.177744 TCCCATAATAGTTTCCCTTTTTGTGTC 59.822 37.037 0.00 0.00 0.00 3.67
2321 3153 7.013834 TCCCATAATAGTTTCCCTTTTTGTGT 58.986 34.615 0.00 0.00 0.00 3.72
2322 3154 7.475137 TCCCATAATAGTTTCCCTTTTTGTG 57.525 36.000 0.00 0.00 0.00 3.33
2323 3155 7.898636 TGATCCCATAATAGTTTCCCTTTTTGT 59.101 33.333 0.00 0.00 0.00 2.83
2324 3156 8.305046 TGATCCCATAATAGTTTCCCTTTTTG 57.695 34.615 0.00 0.00 0.00 2.44
2325 3157 8.909423 TTGATCCCATAATAGTTTCCCTTTTT 57.091 30.769 0.00 0.00 0.00 1.94
2326 3158 9.506042 AATTGATCCCATAATAGTTTCCCTTTT 57.494 29.630 0.00 0.00 0.00 2.27
2327 3159 9.506042 AAATTGATCCCATAATAGTTTCCCTTT 57.494 29.630 0.00 0.00 0.00 3.11
2341 3173 9.044150 CAACGCAAAATAATAAATTGATCCCAT 57.956 29.630 0.00 0.00 0.00 4.00
2342 3174 7.493971 CCAACGCAAAATAATAAATTGATCCCA 59.506 33.333 0.00 0.00 0.00 4.37
2343 3175 7.494298 ACCAACGCAAAATAATAAATTGATCCC 59.506 33.333 0.00 0.00 0.00 3.85
2344 3176 8.419076 ACCAACGCAAAATAATAAATTGATCC 57.581 30.769 0.00 0.00 0.00 3.36
2347 3179 8.812329 GCATACCAACGCAAAATAATAAATTGA 58.188 29.630 0.00 0.00 0.00 2.57
2348 3180 8.816144 AGCATACCAACGCAAAATAATAAATTG 58.184 29.630 0.00 0.00 0.00 2.32
2349 3181 8.940768 AGCATACCAACGCAAAATAATAAATT 57.059 26.923 0.00 0.00 0.00 1.82
2350 3182 7.378461 CGAGCATACCAACGCAAAATAATAAAT 59.622 33.333 0.00 0.00 0.00 1.40
2351 3183 6.689241 CGAGCATACCAACGCAAAATAATAAA 59.311 34.615 0.00 0.00 0.00 1.40
2352 3184 6.195868 CGAGCATACCAACGCAAAATAATAA 58.804 36.000 0.00 0.00 0.00 1.40
2353 3185 5.743467 CGAGCATACCAACGCAAAATAATA 58.257 37.500 0.00 0.00 0.00 0.98
2354 3186 4.597079 CGAGCATACCAACGCAAAATAAT 58.403 39.130 0.00 0.00 0.00 1.28
2355 3187 4.009798 CGAGCATACCAACGCAAAATAA 57.990 40.909 0.00 0.00 0.00 1.40
2356 3188 3.666883 CGAGCATACCAACGCAAAATA 57.333 42.857 0.00 0.00 0.00 1.40
2357 3189 2.542766 CGAGCATACCAACGCAAAAT 57.457 45.000 0.00 0.00 0.00 1.82
2363 3195 3.883462 TTGGCGAGCATACCAACG 58.117 55.556 0.65 0.00 40.98 4.10
2365 3197 2.560504 CATAGTTGGCGAGCATACCAA 58.439 47.619 0.65 0.65 43.59 3.67
2366 3198 1.810031 GCATAGTTGGCGAGCATACCA 60.810 52.381 0.00 0.00 0.00 3.25
2367 3199 0.868406 GCATAGTTGGCGAGCATACC 59.132 55.000 0.00 0.00 0.00 2.73
2385 3217 5.348418 ACAAGTATAATCATGCATCACGC 57.652 39.130 0.00 0.00 42.89 5.34
2386 3218 5.622448 GCAACAAGTATAATCATGCATCACG 59.378 40.000 0.00 0.00 32.80 4.35
2387 3219 6.732154 AGCAACAAGTATAATCATGCATCAC 58.268 36.000 0.00 0.00 34.89 3.06
2388 3220 6.769341 AGAGCAACAAGTATAATCATGCATCA 59.231 34.615 0.00 0.00 34.89 3.07
2389 3221 7.199541 AGAGCAACAAGTATAATCATGCATC 57.800 36.000 0.00 0.00 34.89 3.91
2390 3222 7.389884 CCTAGAGCAACAAGTATAATCATGCAT 59.610 37.037 0.00 0.00 34.89 3.96
2391 3223 6.707608 CCTAGAGCAACAAGTATAATCATGCA 59.292 38.462 0.00 0.00 34.89 3.96
2392 3224 6.931281 TCCTAGAGCAACAAGTATAATCATGC 59.069 38.462 0.00 0.00 0.00 4.06
2393 3225 8.933807 CATCCTAGAGCAACAAGTATAATCATG 58.066 37.037 0.00 0.00 0.00 3.07
2394 3226 8.874156 TCATCCTAGAGCAACAAGTATAATCAT 58.126 33.333 0.00 0.00 0.00 2.45
2395 3227 8.250143 TCATCCTAGAGCAACAAGTATAATCA 57.750 34.615 0.00 0.00 0.00 2.57
2396 3228 9.202273 CTTCATCCTAGAGCAACAAGTATAATC 57.798 37.037 0.00 0.00 0.00 1.75
2397 3229 8.153550 CCTTCATCCTAGAGCAACAAGTATAAT 58.846 37.037 0.00 0.00 0.00 1.28
2398 3230 7.344612 TCCTTCATCCTAGAGCAACAAGTATAA 59.655 37.037 0.00 0.00 0.00 0.98
2399 3231 6.839134 TCCTTCATCCTAGAGCAACAAGTATA 59.161 38.462 0.00 0.00 0.00 1.47
2400 3232 5.663106 TCCTTCATCCTAGAGCAACAAGTAT 59.337 40.000 0.00 0.00 0.00 2.12
2401 3233 5.023452 TCCTTCATCCTAGAGCAACAAGTA 58.977 41.667 0.00 0.00 0.00 2.24
2402 3234 3.840666 TCCTTCATCCTAGAGCAACAAGT 59.159 43.478 0.00 0.00 0.00 3.16
2403 3235 4.478206 TCCTTCATCCTAGAGCAACAAG 57.522 45.455 0.00 0.00 0.00 3.16
2404 3236 5.028549 GATCCTTCATCCTAGAGCAACAA 57.971 43.478 0.00 0.00 0.00 2.83
2405 3237 4.679373 GATCCTTCATCCTAGAGCAACA 57.321 45.455 0.00 0.00 0.00 3.33
2420 3252 3.833559 AAATGGAAGGTGTGGATCCTT 57.166 42.857 14.23 0.00 46.44 3.36
2421 3253 3.075882 TGAAAATGGAAGGTGTGGATCCT 59.924 43.478 14.23 0.00 36.81 3.24
2422 3254 3.430453 TGAAAATGGAAGGTGTGGATCC 58.570 45.455 4.20 4.20 0.00 3.36
2423 3255 4.678840 GCATGAAAATGGAAGGTGTGGATC 60.679 45.833 0.00 0.00 0.00 3.36
2424 3256 3.196254 GCATGAAAATGGAAGGTGTGGAT 59.804 43.478 0.00 0.00 0.00 3.41
2425 3257 2.562298 GCATGAAAATGGAAGGTGTGGA 59.438 45.455 0.00 0.00 0.00 4.02
2426 3258 2.299582 TGCATGAAAATGGAAGGTGTGG 59.700 45.455 0.00 0.00 0.00 4.17
2427 3259 3.663995 TGCATGAAAATGGAAGGTGTG 57.336 42.857 0.00 0.00 0.00 3.82
2428 3260 4.686191 TTTGCATGAAAATGGAAGGTGT 57.314 36.364 0.00 0.00 33.53 4.16
2429 3261 5.701750 TGAATTTGCATGAAAATGGAAGGTG 59.298 36.000 12.58 0.00 33.53 4.00
2430 3262 5.867330 TGAATTTGCATGAAAATGGAAGGT 58.133 33.333 12.58 0.00 33.53 3.50
2431 3263 6.804770 TTGAATTTGCATGAAAATGGAAGG 57.195 33.333 12.58 0.00 33.53 3.46
2432 3264 8.035165 TCATTGAATTTGCATGAAAATGGAAG 57.965 30.769 12.58 3.07 33.53 3.46
2433 3265 7.981102 TCATTGAATTTGCATGAAAATGGAA 57.019 28.000 12.58 8.65 30.21 3.53
2434 3266 9.668497 TTATCATTGAATTTGCATGAAAATGGA 57.332 25.926 12.58 6.36 30.21 3.41
2470 3302 9.040259 TCATATCTACCATTAGCATAAGAAGCT 57.960 33.333 0.00 0.00 45.77 3.74
2471 3303 9.829507 ATCATATCTACCATTAGCATAAGAAGC 57.170 33.333 0.00 0.00 0.00 3.86
2515 3347 9.657419 CCCATAAAAGCAACAAATTCTTCTATT 57.343 29.630 0.00 0.00 0.00 1.73
2516 3348 8.815912 ACCCATAAAAGCAACAAATTCTTCTAT 58.184 29.630 0.00 0.00 0.00 1.98
2517 3349 8.087750 CACCCATAAAAGCAACAAATTCTTCTA 58.912 33.333 0.00 0.00 0.00 2.10
2518 3350 6.930722 CACCCATAAAAGCAACAAATTCTTCT 59.069 34.615 0.00 0.00 0.00 2.85
2519 3351 6.347644 GCACCCATAAAAGCAACAAATTCTTC 60.348 38.462 0.00 0.00 0.00 2.87
2520 3352 5.469760 GCACCCATAAAAGCAACAAATTCTT 59.530 36.000 0.00 0.00 0.00 2.52
2521 3353 4.996758 GCACCCATAAAAGCAACAAATTCT 59.003 37.500 0.00 0.00 0.00 2.40
2522 3354 4.996758 AGCACCCATAAAAGCAACAAATTC 59.003 37.500 0.00 0.00 0.00 2.17
2523 3355 4.971939 AGCACCCATAAAAGCAACAAATT 58.028 34.783 0.00 0.00 0.00 1.82
2524 3356 4.622260 AGCACCCATAAAAGCAACAAAT 57.378 36.364 0.00 0.00 0.00 2.32
2525 3357 4.414337 AAGCACCCATAAAAGCAACAAA 57.586 36.364 0.00 0.00 0.00 2.83
2526 3358 5.244851 TCATAAGCACCCATAAAAGCAACAA 59.755 36.000 0.00 0.00 0.00 2.83
2527 3359 4.769488 TCATAAGCACCCATAAAAGCAACA 59.231 37.500 0.00 0.00 0.00 3.33
2528 3360 5.125417 TCTCATAAGCACCCATAAAAGCAAC 59.875 40.000 0.00 0.00 0.00 4.17
2529 3361 5.260424 TCTCATAAGCACCCATAAAAGCAA 58.740 37.500 0.00 0.00 0.00 3.91
2530 3362 4.854173 TCTCATAAGCACCCATAAAAGCA 58.146 39.130 0.00 0.00 0.00 3.91
2531 3363 6.039717 TCAATCTCATAAGCACCCATAAAAGC 59.960 38.462 0.00 0.00 0.00 3.51
2532 3364 7.572523 TCAATCTCATAAGCACCCATAAAAG 57.427 36.000 0.00 0.00 0.00 2.27
2533 3365 7.953005 TTCAATCTCATAAGCACCCATAAAA 57.047 32.000 0.00 0.00 0.00 1.52
2534 3366 8.000709 AGATTCAATCTCATAAGCACCCATAAA 58.999 33.333 0.00 0.00 33.42 1.40
2535 3367 7.520798 AGATTCAATCTCATAAGCACCCATAA 58.479 34.615 0.00 0.00 33.42 1.90
2536 3368 7.083062 AGATTCAATCTCATAAGCACCCATA 57.917 36.000 0.00 0.00 33.42 2.74
2537 3369 5.950023 AGATTCAATCTCATAAGCACCCAT 58.050 37.500 0.00 0.00 33.42 4.00
2538 3370 5.378230 AGATTCAATCTCATAAGCACCCA 57.622 39.130 0.00 0.00 33.42 4.51
2539 3371 6.939163 ACATAGATTCAATCTCATAAGCACCC 59.061 38.462 2.18 0.00 40.76 4.61
2540 3372 7.976135 ACATAGATTCAATCTCATAAGCACC 57.024 36.000 2.18 0.00 40.76 5.01
2561 3393 9.768662 ATCAAAGTCATCAAAAGCTTTAAACAT 57.231 25.926 13.10 0.00 30.98 2.71
2562 3394 9.033481 CATCAAAGTCATCAAAAGCTTTAAACA 57.967 29.630 13.10 0.00 30.98 2.83
2563 3395 9.248291 TCATCAAAGTCATCAAAAGCTTTAAAC 57.752 29.630 13.10 6.67 30.98 2.01
2564 3396 9.985730 ATCATCAAAGTCATCAAAAGCTTTAAA 57.014 25.926 13.10 3.91 30.98 1.52
2565 3397 9.985730 AATCATCAAAGTCATCAAAAGCTTTAA 57.014 25.926 13.10 4.30 30.98 1.52
2567 3399 9.985730 TTAATCATCAAAGTCATCAAAAGCTTT 57.014 25.926 5.69 5.69 0.00 3.51
2568 3400 9.635520 CTTAATCATCAAAGTCATCAAAAGCTT 57.364 29.630 0.00 0.00 0.00 3.74
2569 3401 8.800332 ACTTAATCATCAAAGTCATCAAAAGCT 58.200 29.630 0.00 0.00 30.08 3.74
2570 3402 8.976986 ACTTAATCATCAAAGTCATCAAAAGC 57.023 30.769 0.00 0.00 30.08 3.51
2578 3410 8.999431 GGTCTACAAACTTAATCATCAAAGTCA 58.001 33.333 0.00 0.00 34.91 3.41
2579 3411 9.220767 AGGTCTACAAACTTAATCATCAAAGTC 57.779 33.333 0.00 0.00 34.91 3.01
2580 3412 9.003658 CAGGTCTACAAACTTAATCATCAAAGT 57.996 33.333 0.00 0.00 37.54 2.66
2581 3413 9.219603 TCAGGTCTACAAACTTAATCATCAAAG 57.780 33.333 0.00 0.00 0.00 2.77
2582 3414 9.567776 TTCAGGTCTACAAACTTAATCATCAAA 57.432 29.630 0.00 0.00 0.00 2.69
2583 3415 9.567776 TTTCAGGTCTACAAACTTAATCATCAA 57.432 29.630 0.00 0.00 0.00 2.57
2584 3416 9.567776 TTTTCAGGTCTACAAACTTAATCATCA 57.432 29.630 0.00 0.00 0.00 3.07
2591 3423 9.569122 AGCTAAATTTTCAGGTCTACAAACTTA 57.431 29.630 0.00 0.00 0.00 2.24
2592 3424 8.465273 AGCTAAATTTTCAGGTCTACAAACTT 57.535 30.769 0.00 0.00 0.00 2.66
2593 3425 9.740710 ATAGCTAAATTTTCAGGTCTACAAACT 57.259 29.630 0.00 0.00 0.00 2.66
2661 3493 9.253832 TGGAGAATTCCTTCATAAAAGCATTAA 57.746 29.630 0.65 0.00 44.36 1.40
2662 3494 8.686334 GTGGAGAATTCCTTCATAAAAGCATTA 58.314 33.333 0.65 0.00 44.36 1.90
2663 3495 7.398332 AGTGGAGAATTCCTTCATAAAAGCATT 59.602 33.333 0.65 0.00 44.36 3.56
2664 3496 6.894103 AGTGGAGAATTCCTTCATAAAAGCAT 59.106 34.615 0.65 0.00 44.36 3.79
2665 3497 6.151648 CAGTGGAGAATTCCTTCATAAAAGCA 59.848 38.462 0.65 0.00 44.36 3.91
2666 3498 6.151817 ACAGTGGAGAATTCCTTCATAAAAGC 59.848 38.462 0.65 0.00 44.36 3.51
2667 3499 7.148171 GGACAGTGGAGAATTCCTTCATAAAAG 60.148 40.741 0.65 0.00 44.36 2.27
2668 3500 6.659242 GGACAGTGGAGAATTCCTTCATAAAA 59.341 38.462 0.65 0.00 44.36 1.52
2669 3501 6.180472 GGACAGTGGAGAATTCCTTCATAAA 58.820 40.000 0.65 0.00 44.36 1.40
2670 3502 5.250543 TGGACAGTGGAGAATTCCTTCATAA 59.749 40.000 0.65 0.00 44.36 1.90
2671 3503 4.782691 TGGACAGTGGAGAATTCCTTCATA 59.217 41.667 0.65 0.00 44.36 2.15
2672 3504 3.588842 TGGACAGTGGAGAATTCCTTCAT 59.411 43.478 0.65 0.00 44.36 2.57
2673 3505 2.978978 TGGACAGTGGAGAATTCCTTCA 59.021 45.455 0.65 0.00 44.36 3.02
2674 3506 3.703001 TGGACAGTGGAGAATTCCTTC 57.297 47.619 0.65 0.00 44.36 3.46
2675 3507 3.652869 TCTTGGACAGTGGAGAATTCCTT 59.347 43.478 0.65 0.00 44.36 3.36
2676 3508 3.251484 TCTTGGACAGTGGAGAATTCCT 58.749 45.455 0.65 0.00 44.36 3.36
2677 3509 3.703001 TCTTGGACAGTGGAGAATTCC 57.297 47.619 0.65 0.00 44.31 3.01
2678 3510 4.899502 TCTTCTTGGACAGTGGAGAATTC 58.100 43.478 0.00 0.00 0.00 2.17
2679 3511 4.594920 TCTCTTCTTGGACAGTGGAGAATT 59.405 41.667 0.00 0.00 32.41 2.17
2680 3512 4.020662 GTCTCTTCTTGGACAGTGGAGAAT 60.021 45.833 0.00 0.00 35.02 2.40
2681 3513 3.322254 GTCTCTTCTTGGACAGTGGAGAA 59.678 47.826 0.00 0.00 35.02 2.87
2682 3514 2.894126 GTCTCTTCTTGGACAGTGGAGA 59.106 50.000 0.00 0.00 32.69 3.71
2683 3515 2.896685 AGTCTCTTCTTGGACAGTGGAG 59.103 50.000 0.00 0.00 35.18 3.86
2684 3516 2.964209 AGTCTCTTCTTGGACAGTGGA 58.036 47.619 0.00 0.00 35.18 4.02
2685 3517 4.873746 TTAGTCTCTTCTTGGACAGTGG 57.126 45.455 0.00 0.00 35.18 4.00
2686 3518 9.442047 AAAATATTAGTCTCTTCTTGGACAGTG 57.558 33.333 0.00 0.00 35.18 3.66
2687 3519 9.442047 CAAAATATTAGTCTCTTCTTGGACAGT 57.558 33.333 0.00 0.00 35.18 3.55
2688 3520 8.394121 GCAAAATATTAGTCTCTTCTTGGACAG 58.606 37.037 0.00 0.00 35.18 3.51
2689 3521 7.882791 TGCAAAATATTAGTCTCTTCTTGGACA 59.117 33.333 0.00 0.00 35.18 4.02
2690 3522 8.268850 TGCAAAATATTAGTCTCTTCTTGGAC 57.731 34.615 0.00 0.00 0.00 4.02
2691 3523 7.554118 CCTGCAAAATATTAGTCTCTTCTTGGA 59.446 37.037 0.00 0.00 0.00 3.53
2692 3524 7.554118 TCCTGCAAAATATTAGTCTCTTCTTGG 59.446 37.037 0.00 0.00 0.00 3.61
2693 3525 8.498054 TCCTGCAAAATATTAGTCTCTTCTTG 57.502 34.615 0.00 0.00 0.00 3.02
2694 3526 9.171877 CTTCCTGCAAAATATTAGTCTCTTCTT 57.828 33.333 0.00 0.00 0.00 2.52
2695 3527 7.281999 GCTTCCTGCAAAATATTAGTCTCTTCT 59.718 37.037 0.00 0.00 42.31 2.85
2696 3528 7.281999 AGCTTCCTGCAAAATATTAGTCTCTTC 59.718 37.037 0.00 0.00 45.94 2.87
2697 3529 7.115414 AGCTTCCTGCAAAATATTAGTCTCTT 58.885 34.615 0.00 0.00 45.94 2.85
2698 3530 6.657875 AGCTTCCTGCAAAATATTAGTCTCT 58.342 36.000 0.00 0.00 45.94 3.10
2699 3531 6.934048 AGCTTCCTGCAAAATATTAGTCTC 57.066 37.500 0.00 0.00 45.94 3.36
2700 3532 7.446625 CCATAGCTTCCTGCAAAATATTAGTCT 59.553 37.037 0.00 0.00 45.94 3.24
2701 3533 7.445402 TCCATAGCTTCCTGCAAAATATTAGTC 59.555 37.037 0.00 0.00 45.94 2.59
2702 3534 7.290061 TCCATAGCTTCCTGCAAAATATTAGT 58.710 34.615 0.00 0.00 45.94 2.24
2703 3535 7.750229 TCCATAGCTTCCTGCAAAATATTAG 57.250 36.000 0.00 0.00 45.94 1.73
2704 3536 7.998383 TCTTCCATAGCTTCCTGCAAAATATTA 59.002 33.333 0.00 0.00 45.94 0.98
2705 3537 6.835488 TCTTCCATAGCTTCCTGCAAAATATT 59.165 34.615 0.00 0.00 45.94 1.28
2706 3538 6.367983 TCTTCCATAGCTTCCTGCAAAATAT 58.632 36.000 0.00 0.00 45.94 1.28
2707 3539 5.754782 TCTTCCATAGCTTCCTGCAAAATA 58.245 37.500 0.00 0.00 45.94 1.40
2708 3540 4.603131 TCTTCCATAGCTTCCTGCAAAAT 58.397 39.130 0.00 0.00 45.94 1.82
2709 3541 4.032960 TCTTCCATAGCTTCCTGCAAAA 57.967 40.909 0.00 0.00 45.94 2.44
2710 3542 3.719268 TCTTCCATAGCTTCCTGCAAA 57.281 42.857 0.00 0.00 45.94 3.68
2711 3543 3.264193 TCTTCTTCCATAGCTTCCTGCAA 59.736 43.478 0.00 0.00 45.94 4.08
2712 3544 2.840038 TCTTCTTCCATAGCTTCCTGCA 59.160 45.455 0.00 0.00 45.94 4.41
2713 3545 3.550437 TCTTCTTCCATAGCTTCCTGC 57.450 47.619 0.00 0.00 43.29 4.85
2714 3546 6.600822 TCAATTTCTTCTTCCATAGCTTCCTG 59.399 38.462 0.00 0.00 0.00 3.86
2715 3547 6.725364 TCAATTTCTTCTTCCATAGCTTCCT 58.275 36.000 0.00 0.00 0.00 3.36
2716 3548 7.284034 TCATCAATTTCTTCTTCCATAGCTTCC 59.716 37.037 0.00 0.00 0.00 3.46
2717 3549 8.218338 TCATCAATTTCTTCTTCCATAGCTTC 57.782 34.615 0.00 0.00 0.00 3.86
2718 3550 8.585471 TTCATCAATTTCTTCTTCCATAGCTT 57.415 30.769 0.00 0.00 0.00 3.74
2719 3551 8.465201 GTTTCATCAATTTCTTCTTCCATAGCT 58.535 33.333 0.00 0.00 0.00 3.32
2720 3552 8.465201 AGTTTCATCAATTTCTTCTTCCATAGC 58.535 33.333 0.00 0.00 0.00 2.97
2721 3553 9.784680 CAGTTTCATCAATTTCTTCTTCCATAG 57.215 33.333 0.00 0.00 0.00 2.23
2722 3554 9.300681 ACAGTTTCATCAATTTCTTCTTCCATA 57.699 29.630 0.00 0.00 0.00 2.74
2723 3555 8.086522 CACAGTTTCATCAATTTCTTCTTCCAT 58.913 33.333 0.00 0.00 0.00 3.41
2724 3556 7.285172 TCACAGTTTCATCAATTTCTTCTTCCA 59.715 33.333 0.00 0.00 0.00 3.53
2725 3557 7.651808 TCACAGTTTCATCAATTTCTTCTTCC 58.348 34.615 0.00 0.00 0.00 3.46
2726 3558 7.325579 GCTCACAGTTTCATCAATTTCTTCTTC 59.674 37.037 0.00 0.00 0.00 2.87
2727 3559 7.014038 AGCTCACAGTTTCATCAATTTCTTCTT 59.986 33.333 0.00 0.00 0.00 2.52
2728 3560 6.489361 AGCTCACAGTTTCATCAATTTCTTCT 59.511 34.615 0.00 0.00 0.00 2.85
2729 3561 6.675987 AGCTCACAGTTTCATCAATTTCTTC 58.324 36.000 0.00 0.00 0.00 2.87
2730 3562 6.263842 TGAGCTCACAGTTTCATCAATTTCTT 59.736 34.615 13.74 0.00 0.00 2.52
2731 3563 5.766670 TGAGCTCACAGTTTCATCAATTTCT 59.233 36.000 13.74 0.00 0.00 2.52
2732 3564 6.005583 TGAGCTCACAGTTTCATCAATTTC 57.994 37.500 13.74 0.00 0.00 2.17
2733 3565 6.585695 ATGAGCTCACAGTTTCATCAATTT 57.414 33.333 20.97 0.00 0.00 1.82
2734 3566 6.387465 CAATGAGCTCACAGTTTCATCAATT 58.613 36.000 20.97 1.10 30.39 2.32
2735 3567 5.105877 CCAATGAGCTCACAGTTTCATCAAT 60.106 40.000 20.97 0.00 30.39 2.57
2736 3568 4.216902 CCAATGAGCTCACAGTTTCATCAA 59.783 41.667 20.97 0.00 30.39 2.57
2737 3569 3.754850 CCAATGAGCTCACAGTTTCATCA 59.245 43.478 20.97 0.00 30.39 3.07
2738 3570 4.005650 TCCAATGAGCTCACAGTTTCATC 58.994 43.478 20.97 0.00 30.39 2.92
2739 3571 4.025040 TCCAATGAGCTCACAGTTTCAT 57.975 40.909 20.97 0.00 31.93 2.57
2740 3572 3.490439 TCCAATGAGCTCACAGTTTCA 57.510 42.857 20.97 0.00 0.00 2.69
2741 3573 4.005650 TCATCCAATGAGCTCACAGTTTC 58.994 43.478 20.97 0.00 33.59 2.78
2742 3574 4.025040 TCATCCAATGAGCTCACAGTTT 57.975 40.909 20.97 6.50 33.59 2.66
2743 3575 3.708403 TCATCCAATGAGCTCACAGTT 57.292 42.857 20.97 6.93 33.59 3.16
2744 3576 3.708403 TTCATCCAATGAGCTCACAGT 57.292 42.857 20.97 4.37 40.94 3.55
2745 3577 5.182570 TCTTTTTCATCCAATGAGCTCACAG 59.817 40.000 20.97 14.31 40.94 3.66
2746 3578 5.072055 TCTTTTTCATCCAATGAGCTCACA 58.928 37.500 20.97 3.58 40.94 3.58
2747 3579 5.633830 TCTTTTTCATCCAATGAGCTCAC 57.366 39.130 20.97 0.00 40.94 3.51
2748 3580 5.947566 TCATCTTTTTCATCCAATGAGCTCA 59.052 36.000 20.79 20.79 40.94 4.26
2749 3581 6.446781 TCATCTTTTTCATCCAATGAGCTC 57.553 37.500 6.82 6.82 40.94 4.09
2750 3582 6.605995 TCATCATCTTTTTCATCCAATGAGCT 59.394 34.615 0.00 0.00 40.94 4.09
2751 3583 6.802608 TCATCATCTTTTTCATCCAATGAGC 58.197 36.000 0.00 0.00 40.94 4.26
2752 3584 7.284716 TCCTCATCATCTTTTTCATCCAATGAG 59.715 37.037 0.00 0.00 40.94 2.90
2753 3585 7.120716 TCCTCATCATCTTTTTCATCCAATGA 58.879 34.615 0.00 0.00 37.55 2.57
2754 3586 7.284716 TCTCCTCATCATCTTTTTCATCCAATG 59.715 37.037 0.00 0.00 0.00 2.82
2755 3587 7.351952 TCTCCTCATCATCTTTTTCATCCAAT 58.648 34.615 0.00 0.00 0.00 3.16
2756 3588 6.724351 TCTCCTCATCATCTTTTTCATCCAA 58.276 36.000 0.00 0.00 0.00 3.53
2757 3589 6.317663 TCTCCTCATCATCTTTTTCATCCA 57.682 37.500 0.00 0.00 0.00 3.41
2758 3590 5.239087 GCTCTCCTCATCATCTTTTTCATCC 59.761 44.000 0.00 0.00 0.00 3.51
2759 3591 5.050227 CGCTCTCCTCATCATCTTTTTCATC 60.050 44.000 0.00 0.00 0.00 2.92
2760 3592 4.815308 CGCTCTCCTCATCATCTTTTTCAT 59.185 41.667 0.00 0.00 0.00 2.57
2761 3593 4.081476 TCGCTCTCCTCATCATCTTTTTCA 60.081 41.667 0.00 0.00 0.00 2.69
2762 3594 4.437239 TCGCTCTCCTCATCATCTTTTTC 58.563 43.478 0.00 0.00 0.00 2.29
2763 3595 4.478206 TCGCTCTCCTCATCATCTTTTT 57.522 40.909 0.00 0.00 0.00 1.94
2764 3596 4.161189 TCTTCGCTCTCCTCATCATCTTTT 59.839 41.667 0.00 0.00 0.00 2.27
2765 3597 3.703556 TCTTCGCTCTCCTCATCATCTTT 59.296 43.478 0.00 0.00 0.00 2.52
2766 3598 3.295093 TCTTCGCTCTCCTCATCATCTT 58.705 45.455 0.00 0.00 0.00 2.40
2767 3599 2.942804 TCTTCGCTCTCCTCATCATCT 58.057 47.619 0.00 0.00 0.00 2.90
2768 3600 3.380142 GTTCTTCGCTCTCCTCATCATC 58.620 50.000 0.00 0.00 0.00 2.92
2769 3601 3.451141 GTTCTTCGCTCTCCTCATCAT 57.549 47.619 0.00 0.00 0.00 2.45
2770 3602 2.949451 GTTCTTCGCTCTCCTCATCA 57.051 50.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.