Multiple sequence alignment - TraesCS6B01G395000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G395000 chr6B 100.000 3121 0 0 1 3121 670288805 670285685 0.000000e+00 5764.0
1 TraesCS6B01G395000 chr6B 94.604 278 15 0 2843 3120 669553770 669554047 6.180000e-117 431.0
2 TraesCS6B01G395000 chr6B 94.604 278 15 0 2843 3120 670009929 670009652 6.180000e-117 431.0
3 TraesCS6B01G395000 chr6B 94.485 272 15 0 2843 3114 669884415 669884686 1.340000e-113 420.0
4 TraesCS6B01G395000 chr6A 87.032 1496 105 38 1183 2650 591951735 591950301 0.000000e+00 1605.0
5 TraesCS6B01G395000 chr6A 86.538 780 35 17 453 1180 591952628 591951867 0.000000e+00 795.0
6 TraesCS6B01G395000 chr6D 87.883 1403 99 28 1183 2552 445160057 445158693 0.000000e+00 1583.0
7 TraesCS6B01G395000 chr6D 89.367 743 41 15 459 1180 445160914 445160189 0.000000e+00 900.0
8 TraesCS6B01G395000 chr6D 93.525 278 18 0 2843 3120 445062210 445061933 6.230000e-112 414.0
9 TraesCS6B01G395000 chrUn 98.917 554 5 1 2568 3121 189194278 189194830 0.000000e+00 989.0
10 TraesCS6B01G395000 chrUn 98.917 554 5 1 2568 3121 189229789 189230341 0.000000e+00 989.0
11 TraesCS6B01G395000 chrUn 98.730 551 7 0 2571 3121 306442426 306441876 0.000000e+00 979.0
12 TraesCS6B01G395000 chrUn 98.556 554 8 0 2568 3121 318284130 318284683 0.000000e+00 979.0
13 TraesCS6B01G395000 chrUn 87.822 698 45 7 1865 2556 163384083 163383420 0.000000e+00 782.0
14 TraesCS6B01G395000 chrUn 88.914 451 24 8 1353 1803 163384507 163384083 1.650000e-147 532.0
15 TraesCS6B01G395000 chrUn 97.126 174 5 0 282 455 15911376 15911549 8.460000e-76 294.0
16 TraesCS6B01G395000 chrUn 87.983 233 27 1 1 233 134258462 134258693 1.100000e-69 274.0
17 TraesCS6B01G395000 chrUn 83.077 195 15 11 1183 1367 163387311 163387125 8.960000e-36 161.0
18 TraesCS6B01G395000 chr4B 93.878 196 9 3 264 456 20487334 20487529 3.040000e-75 292.0
19 TraesCS6B01G395000 chr2A 97.647 170 4 0 287 456 199082149 199082318 3.040000e-75 292.0
20 TraesCS6B01G395000 chr2A 97.110 173 5 0 283 455 495825454 495825626 3.040000e-75 292.0
21 TraesCS6B01G395000 chr2A 87.607 234 28 1 1 234 756496240 756496472 1.430000e-68 270.0
22 TraesCS6B01G395000 chr2A 86.345 249 31 3 1 248 15934705 15934459 5.130000e-68 268.0
23 TraesCS6B01G395000 chr7B 96.610 177 3 3 290 465 534818576 534818750 1.090000e-74 291.0
24 TraesCS6B01G395000 chr7B 98.193 166 3 0 290 455 657073533 657073368 1.090000e-74 291.0
25 TraesCS6B01G395000 chr7B 95.531 179 7 1 277 455 741557245 741557422 5.090000e-73 285.0
26 TraesCS6B01G395000 chr2B 97.093 172 4 1 284 454 237980293 237980464 3.940000e-74 289.0
27 TraesCS6B01G395000 chr2B 86.853 251 28 3 1 247 693066001 693066250 3.070000e-70 276.0
28 TraesCS6B01G395000 chr2B 85.657 251 34 2 1 249 776322132 776321882 2.390000e-66 263.0
29 TraesCS6B01G395000 chr5B 95.055 182 8 1 280 460 508562834 508563015 5.090000e-73 285.0
30 TraesCS6B01G395000 chr3D 86.585 246 30 3 1 245 484827372 484827129 5.130000e-68 268.0
31 TraesCS6B01G395000 chr3D 86.166 253 27 5 1 248 5040124 5039875 1.850000e-67 267.0
32 TraesCS6B01G395000 chr5D 86.235 247 33 1 1 247 249930396 249930641 1.850000e-67 267.0
33 TraesCS6B01G395000 chr7D 85.771 253 31 5 2 250 548054624 548054373 2.390000e-66 263.0
34 TraesCS6B01G395000 chr7A 82.946 129 19 3 1947 2074 96192425 96192299 2.540000e-21 113.0
35 TraesCS6B01G395000 chr4D 97.143 35 1 0 2647 2681 64375905 64375939 3.360000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G395000 chr6B 670285685 670288805 3120 True 5764.000000 5764 100.000000 1 3121 1 chr6B.!!$R2 3120
1 TraesCS6B01G395000 chr6A 591950301 591952628 2327 True 1200.000000 1605 86.785000 453 2650 2 chr6A.!!$R1 2197
2 TraesCS6B01G395000 chr6D 445158693 445160914 2221 True 1241.500000 1583 88.625000 459 2552 2 chr6D.!!$R2 2093
3 TraesCS6B01G395000 chrUn 189194278 189194830 552 False 989.000000 989 98.917000 2568 3121 1 chrUn.!!$F3 553
4 TraesCS6B01G395000 chrUn 189229789 189230341 552 False 989.000000 989 98.917000 2568 3121 1 chrUn.!!$F4 553
5 TraesCS6B01G395000 chrUn 306441876 306442426 550 True 979.000000 979 98.730000 2571 3121 1 chrUn.!!$R1 550
6 TraesCS6B01G395000 chrUn 318284130 318284683 553 False 979.000000 979 98.556000 2568 3121 1 chrUn.!!$F5 553
7 TraesCS6B01G395000 chrUn 163383420 163387311 3891 True 491.666667 782 86.604333 1183 2556 3 chrUn.!!$R2 1373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.028902 GTTGTTCTGGTGCGTTGGTC 59.971 55.0 0.0 0.0 0.0 4.02 F
25 26 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.0 0.0 0.0 0.0 2.94 F
1768 4640 0.108186 TCAATCCTCTGCGTTGCGAT 60.108 50.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 4577 0.606096 TCGTGGGAAATTGAGCTCGA 59.394 50.000 6.01 6.01 0.0 4.04 R
1874 4746 1.067495 CCTCTCTTCGTGAACACCTCC 60.067 57.143 0.00 0.00 0.0 4.30 R
2934 5831 0.310543 TGAAGTCACCGTTGCAATGC 59.689 50.000 13.42 0.00 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.544686 GTTGTTGTTCTGGTGCGTTG 58.455 50.000 0.00 0.00 0.00 4.10
20 21 0.453793 TTGTTGTTCTGGTGCGTTGG 59.546 50.000 0.00 0.00 0.00 3.77
21 22 0.678366 TGTTGTTCTGGTGCGTTGGT 60.678 50.000 0.00 0.00 0.00 3.67
22 23 0.028902 GTTGTTCTGGTGCGTTGGTC 59.971 55.000 0.00 0.00 0.00 4.02
23 24 1.098712 TTGTTCTGGTGCGTTGGTCC 61.099 55.000 0.00 0.00 0.00 4.46
24 25 1.227853 GTTCTGGTGCGTTGGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
25 26 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.000 0.00 0.00 0.00 2.94
26 27 0.981183 TTCTGGTGCGTTGGTCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
27 28 0.249120 TCTGGTGCGTTGGTCCTATG 59.751 55.000 0.00 0.00 0.00 2.23
28 29 0.744414 CTGGTGCGTTGGTCCTATGG 60.744 60.000 0.00 0.00 0.00 2.74
29 30 1.451387 GGTGCGTTGGTCCTATGGG 60.451 63.158 0.00 0.00 0.00 4.00
30 31 1.451387 GTGCGTTGGTCCTATGGGG 60.451 63.158 0.00 0.00 0.00 4.96
31 32 1.921346 TGCGTTGGTCCTATGGGGT 60.921 57.895 0.00 0.00 36.25 4.95
32 33 1.153229 GCGTTGGTCCTATGGGGTC 60.153 63.158 0.00 0.00 36.25 4.46
33 34 1.623542 GCGTTGGTCCTATGGGGTCT 61.624 60.000 0.00 0.00 36.25 3.85
34 35 0.909623 CGTTGGTCCTATGGGGTCTT 59.090 55.000 0.00 0.00 36.25 3.01
35 36 2.112998 CGTTGGTCCTATGGGGTCTTA 58.887 52.381 0.00 0.00 36.25 2.10
36 37 2.102588 CGTTGGTCCTATGGGGTCTTAG 59.897 54.545 0.00 0.00 36.25 2.18
37 38 1.802553 TGGTCCTATGGGGTCTTAGC 58.197 55.000 0.00 0.00 36.25 3.09
38 39 1.009060 TGGTCCTATGGGGTCTTAGCA 59.991 52.381 0.00 0.00 36.25 3.49
39 40 1.416772 GGTCCTATGGGGTCTTAGCAC 59.583 57.143 0.00 0.00 36.25 4.40
40 41 1.068741 GTCCTATGGGGTCTTAGCACG 59.931 57.143 0.00 0.00 36.25 5.34
41 42 1.063492 TCCTATGGGGTCTTAGCACGA 60.063 52.381 0.00 0.00 36.25 4.35
42 43 1.068741 CCTATGGGGTCTTAGCACGAC 59.931 57.143 0.00 0.00 0.00 4.34
43 44 0.742505 TATGGGGTCTTAGCACGACG 59.257 55.000 0.00 0.00 32.24 5.12
44 45 1.956629 ATGGGGTCTTAGCACGACGG 61.957 60.000 0.00 0.00 32.24 4.79
45 46 2.508663 GGGTCTTAGCACGACGGC 60.509 66.667 0.00 0.00 32.24 5.68
47 48 1.080025 GGTCTTAGCACGACGGCTT 60.080 57.895 14.55 2.16 42.71 4.35
48 49 1.077089 GGTCTTAGCACGACGGCTTC 61.077 60.000 14.55 5.52 42.71 3.86
49 50 0.109226 GTCTTAGCACGACGGCTTCT 60.109 55.000 14.55 1.75 42.71 2.85
50 51 0.170561 TCTTAGCACGACGGCTTCTC 59.829 55.000 14.55 0.00 42.71 2.87
51 52 1.134530 CTTAGCACGACGGCTTCTCG 61.135 60.000 14.55 0.00 42.71 4.04
52 53 1.579964 TTAGCACGACGGCTTCTCGA 61.580 55.000 14.55 0.00 42.71 4.04
53 54 2.249557 TAGCACGACGGCTTCTCGAC 62.250 60.000 14.55 0.00 42.71 4.20
54 55 2.561885 CACGACGGCTTCTCGACT 59.438 61.111 0.00 0.00 35.08 4.18
55 56 1.797933 CACGACGGCTTCTCGACTG 60.798 63.158 0.00 0.00 35.08 3.51
56 57 2.259439 ACGACGGCTTCTCGACTGT 61.259 57.895 0.00 0.00 35.08 3.55
57 58 1.512310 CGACGGCTTCTCGACTGTC 60.512 63.158 0.00 0.00 38.55 3.51
58 59 1.877367 GACGGCTTCTCGACTGTCT 59.123 57.895 6.21 0.00 38.81 3.41
59 60 1.085091 GACGGCTTCTCGACTGTCTA 58.915 55.000 6.21 0.00 38.81 2.59
60 61 0.803740 ACGGCTTCTCGACTGTCTAC 59.196 55.000 6.21 0.00 0.00 2.59
61 62 1.088306 CGGCTTCTCGACTGTCTACT 58.912 55.000 6.21 0.00 0.00 2.57
62 63 2.277969 CGGCTTCTCGACTGTCTACTA 58.722 52.381 6.21 0.00 0.00 1.82
63 64 2.030701 CGGCTTCTCGACTGTCTACTAC 59.969 54.545 6.21 0.00 0.00 2.73
64 65 3.008330 GGCTTCTCGACTGTCTACTACA 58.992 50.000 6.21 0.00 36.42 2.74
65 66 3.439476 GGCTTCTCGACTGTCTACTACAA 59.561 47.826 6.21 0.00 37.74 2.41
66 67 4.405196 GCTTCTCGACTGTCTACTACAAC 58.595 47.826 6.21 0.00 37.74 3.32
67 68 4.083431 GCTTCTCGACTGTCTACTACAACA 60.083 45.833 6.21 0.00 37.74 3.33
68 69 5.562307 GCTTCTCGACTGTCTACTACAACAA 60.562 44.000 6.21 0.00 37.74 2.83
69 70 6.381481 TTCTCGACTGTCTACTACAACAAA 57.619 37.500 6.21 0.00 37.74 2.83
70 71 6.570672 TCTCGACTGTCTACTACAACAAAT 57.429 37.500 6.21 0.00 37.74 2.32
71 72 6.978338 TCTCGACTGTCTACTACAACAAATT 58.022 36.000 6.21 0.00 37.74 1.82
72 73 6.861572 TCTCGACTGTCTACTACAACAAATTG 59.138 38.462 6.21 0.00 37.74 2.32
80 81 3.949855 CAACAAATTGTGCCCGGC 58.050 55.556 1.04 1.04 0.00 6.13
81 82 1.367102 CAACAAATTGTGCCCGGCT 59.633 52.632 11.61 0.00 0.00 5.52
82 83 0.667184 CAACAAATTGTGCCCGGCTC 60.667 55.000 11.61 7.85 0.00 4.70
83 84 1.815817 AACAAATTGTGCCCGGCTCC 61.816 55.000 11.61 1.66 0.00 4.70
84 85 3.061848 AAATTGTGCCCGGCTCCG 61.062 61.111 11.61 0.48 39.44 4.63
101 102 4.933064 GGCGAGGGAGCGTCGATG 62.933 72.222 0.00 0.00 43.12 3.84
102 103 3.889044 GCGAGGGAGCGTCGATGA 61.889 66.667 9.31 0.00 43.12 2.92
103 104 2.024871 CGAGGGAGCGTCGATGAC 59.975 66.667 9.31 1.15 43.12 3.06
124 125 2.512515 GGCTCGCTTTCGGCTCAT 60.513 61.111 0.00 0.00 39.13 2.90
125 126 2.109126 GGCTCGCTTTCGGCTCATT 61.109 57.895 0.00 0.00 39.13 2.57
126 127 1.648467 GGCTCGCTTTCGGCTCATTT 61.648 55.000 0.00 0.00 39.13 2.32
127 128 0.247854 GCTCGCTTTCGGCTCATTTC 60.248 55.000 0.00 0.00 39.13 2.17
128 129 1.078709 CTCGCTTTCGGCTCATTTCA 58.921 50.000 0.00 0.00 39.13 2.69
129 130 1.061711 CTCGCTTTCGGCTCATTTCAG 59.938 52.381 0.00 0.00 39.13 3.02
130 131 0.798776 CGCTTTCGGCTCATTTCAGT 59.201 50.000 0.00 0.00 39.13 3.41
131 132 1.464687 CGCTTTCGGCTCATTTCAGTG 60.465 52.381 0.00 0.00 39.13 3.66
132 133 1.730446 GCTTTCGGCTCATTTCAGTGC 60.730 52.381 0.00 0.00 38.06 4.40
133 134 1.808945 CTTTCGGCTCATTTCAGTGCT 59.191 47.619 0.00 0.00 0.00 4.40
134 135 1.896220 TTCGGCTCATTTCAGTGCTT 58.104 45.000 0.00 0.00 0.00 3.91
135 136 1.159285 TCGGCTCATTTCAGTGCTTG 58.841 50.000 0.00 0.00 0.00 4.01
136 137 0.877071 CGGCTCATTTCAGTGCTTGT 59.123 50.000 0.00 0.00 0.00 3.16
137 138 2.076100 CGGCTCATTTCAGTGCTTGTA 58.924 47.619 0.00 0.00 0.00 2.41
138 139 2.094894 CGGCTCATTTCAGTGCTTGTAG 59.905 50.000 0.00 0.00 0.00 2.74
139 140 3.077359 GGCTCATTTCAGTGCTTGTAGT 58.923 45.455 0.00 0.00 0.00 2.73
140 141 3.126000 GGCTCATTTCAGTGCTTGTAGTC 59.874 47.826 0.00 0.00 0.00 2.59
141 142 3.748048 GCTCATTTCAGTGCTTGTAGTCA 59.252 43.478 0.00 0.00 0.00 3.41
142 143 4.394300 GCTCATTTCAGTGCTTGTAGTCAT 59.606 41.667 0.00 0.00 0.00 3.06
143 144 5.447010 GCTCATTTCAGTGCTTGTAGTCATC 60.447 44.000 0.00 0.00 0.00 2.92
144 145 4.627035 TCATTTCAGTGCTTGTAGTCATCG 59.373 41.667 0.00 0.00 0.00 3.84
145 146 1.996292 TCAGTGCTTGTAGTCATCGC 58.004 50.000 0.00 0.00 0.00 4.58
146 147 1.546029 TCAGTGCTTGTAGTCATCGCT 59.454 47.619 0.00 0.00 0.00 4.93
147 148 2.752903 TCAGTGCTTGTAGTCATCGCTA 59.247 45.455 0.00 0.00 0.00 4.26
148 149 3.111838 CAGTGCTTGTAGTCATCGCTAG 58.888 50.000 0.00 0.00 0.00 3.42
149 150 2.099921 AGTGCTTGTAGTCATCGCTAGG 59.900 50.000 0.00 0.00 0.00 3.02
150 151 2.100197 TGCTTGTAGTCATCGCTAGGT 58.900 47.619 0.00 0.00 0.00 3.08
151 152 2.159240 TGCTTGTAGTCATCGCTAGGTG 60.159 50.000 0.00 0.00 0.00 4.00
152 153 2.159226 GCTTGTAGTCATCGCTAGGTGT 60.159 50.000 0.00 0.00 0.00 4.16
153 154 3.676324 GCTTGTAGTCATCGCTAGGTGTT 60.676 47.826 0.00 0.00 0.00 3.32
154 155 3.777465 TGTAGTCATCGCTAGGTGTTC 57.223 47.619 0.00 0.00 0.00 3.18
155 156 3.353557 TGTAGTCATCGCTAGGTGTTCT 58.646 45.455 0.00 0.00 0.00 3.01
156 157 4.520179 TGTAGTCATCGCTAGGTGTTCTA 58.480 43.478 0.00 0.00 0.00 2.10
157 158 4.334759 TGTAGTCATCGCTAGGTGTTCTAC 59.665 45.833 0.00 0.00 0.00 2.59
158 159 2.355132 AGTCATCGCTAGGTGTTCTACG 59.645 50.000 0.00 0.00 0.00 3.51
159 160 2.353889 GTCATCGCTAGGTGTTCTACGA 59.646 50.000 0.00 0.00 36.62 3.43
160 161 3.011818 TCATCGCTAGGTGTTCTACGAA 58.988 45.455 0.00 0.00 36.18 3.85
161 162 3.630769 TCATCGCTAGGTGTTCTACGAAT 59.369 43.478 0.00 0.00 36.18 3.34
162 163 3.687572 TCGCTAGGTGTTCTACGAATC 57.312 47.619 0.00 0.00 32.69 2.52
163 164 3.276857 TCGCTAGGTGTTCTACGAATCT 58.723 45.455 0.00 0.00 32.69 2.40
164 165 3.064958 TCGCTAGGTGTTCTACGAATCTG 59.935 47.826 0.00 0.00 32.69 2.90
165 166 3.707793 GCTAGGTGTTCTACGAATCTGG 58.292 50.000 0.00 0.00 0.00 3.86
166 167 3.130693 GCTAGGTGTTCTACGAATCTGGT 59.869 47.826 0.00 0.00 0.00 4.00
167 168 4.337555 GCTAGGTGTTCTACGAATCTGGTA 59.662 45.833 0.00 0.00 0.00 3.25
168 169 4.985538 AGGTGTTCTACGAATCTGGTAG 57.014 45.455 0.00 0.00 38.94 3.18
169 170 4.342359 AGGTGTTCTACGAATCTGGTAGT 58.658 43.478 0.00 0.00 38.74 2.73
170 171 5.503927 AGGTGTTCTACGAATCTGGTAGTA 58.496 41.667 0.00 0.00 38.74 1.82
171 172 5.948162 AGGTGTTCTACGAATCTGGTAGTAA 59.052 40.000 0.00 0.00 38.74 2.24
172 173 6.606395 AGGTGTTCTACGAATCTGGTAGTAAT 59.394 38.462 0.00 0.00 38.74 1.89
173 174 7.123847 AGGTGTTCTACGAATCTGGTAGTAATT 59.876 37.037 0.00 0.00 38.74 1.40
174 175 7.763071 GGTGTTCTACGAATCTGGTAGTAATTT 59.237 37.037 0.00 0.00 38.74 1.82
175 176 9.148104 GTGTTCTACGAATCTGGTAGTAATTTT 57.852 33.333 0.00 0.00 38.74 1.82
176 177 9.715121 TGTTCTACGAATCTGGTAGTAATTTTT 57.285 29.630 0.00 0.00 38.74 1.94
206 207 7.573916 TTTTTGTGTTTGTTGTACTGTCATG 57.426 32.000 0.00 0.00 0.00 3.07
207 208 6.502136 TTTGTGTTTGTTGTACTGTCATGA 57.498 33.333 0.00 0.00 0.00 3.07
208 209 6.691754 TTGTGTTTGTTGTACTGTCATGAT 57.308 33.333 0.00 0.00 0.00 2.45
209 210 6.691754 TGTGTTTGTTGTACTGTCATGATT 57.308 33.333 0.00 0.00 0.00 2.57
210 211 6.493978 TGTGTTTGTTGTACTGTCATGATTG 58.506 36.000 0.00 0.00 0.00 2.67
211 212 5.914635 GTGTTTGTTGTACTGTCATGATTGG 59.085 40.000 0.00 0.00 0.00 3.16
212 213 5.825151 TGTTTGTTGTACTGTCATGATTGGA 59.175 36.000 0.00 0.00 0.00 3.53
213 214 6.017192 TGTTTGTTGTACTGTCATGATTGGAG 60.017 38.462 0.00 0.00 0.00 3.86
214 215 5.482163 TGTTGTACTGTCATGATTGGAGA 57.518 39.130 0.00 0.00 0.00 3.71
215 216 6.053632 TGTTGTACTGTCATGATTGGAGAT 57.946 37.500 0.00 0.00 0.00 2.75
216 217 5.876460 TGTTGTACTGTCATGATTGGAGATG 59.124 40.000 0.00 0.00 0.00 2.90
217 218 5.937975 TGTACTGTCATGATTGGAGATGA 57.062 39.130 0.00 0.00 0.00 2.92
218 219 6.298441 TGTACTGTCATGATTGGAGATGAA 57.702 37.500 0.00 0.00 30.45 2.57
219 220 6.892485 TGTACTGTCATGATTGGAGATGAAT 58.108 36.000 0.00 0.00 30.45 2.57
220 221 8.021898 TGTACTGTCATGATTGGAGATGAATA 57.978 34.615 0.00 0.00 30.45 1.75
221 222 8.146412 TGTACTGTCATGATTGGAGATGAATAG 58.854 37.037 0.00 0.00 30.45 1.73
222 223 7.370905 ACTGTCATGATTGGAGATGAATAGA 57.629 36.000 0.00 0.00 30.45 1.98
223 224 7.975608 ACTGTCATGATTGGAGATGAATAGAT 58.024 34.615 0.00 0.00 30.45 1.98
224 225 8.095792 ACTGTCATGATTGGAGATGAATAGATC 58.904 37.037 0.00 0.00 30.45 2.75
225 226 7.095270 TGTCATGATTGGAGATGAATAGATCG 58.905 38.462 0.00 0.00 30.45 3.69
226 227 7.039504 TGTCATGATTGGAGATGAATAGATCGA 60.040 37.037 0.00 0.00 30.45 3.59
227 228 7.816513 GTCATGATTGGAGATGAATAGATCGAA 59.183 37.037 0.00 0.00 30.45 3.71
228 229 8.370182 TCATGATTGGAGATGAATAGATCGAAA 58.630 33.333 0.00 0.00 0.00 3.46
229 230 8.657729 CATGATTGGAGATGAATAGATCGAAAG 58.342 37.037 0.00 0.00 0.00 2.62
230 231 7.730084 TGATTGGAGATGAATAGATCGAAAGT 58.270 34.615 0.00 0.00 0.00 2.66
231 232 8.206867 TGATTGGAGATGAATAGATCGAAAGTT 58.793 33.333 0.00 0.00 0.00 2.66
232 233 8.970859 ATTGGAGATGAATAGATCGAAAGTTT 57.029 30.769 0.00 0.00 0.00 2.66
233 234 8.425577 TTGGAGATGAATAGATCGAAAGTTTC 57.574 34.615 5.47 5.47 0.00 2.78
234 235 7.555965 TGGAGATGAATAGATCGAAAGTTTCA 58.444 34.615 15.67 3.66 0.00 2.69
235 236 8.040727 TGGAGATGAATAGATCGAAAGTTTCAA 58.959 33.333 15.67 0.00 0.00 2.69
236 237 8.883731 GGAGATGAATAGATCGAAAGTTTCAAA 58.116 33.333 15.67 3.50 0.00 2.69
264 265 2.814805 AATCCTGATGAGTGGGTTGG 57.185 50.000 0.00 0.00 0.00 3.77
265 266 1.971149 ATCCTGATGAGTGGGTTGGA 58.029 50.000 0.00 0.00 0.00 3.53
266 267 1.971149 TCCTGATGAGTGGGTTGGAT 58.029 50.000 0.00 0.00 0.00 3.41
267 268 1.561076 TCCTGATGAGTGGGTTGGATG 59.439 52.381 0.00 0.00 0.00 3.51
268 269 1.283029 CCTGATGAGTGGGTTGGATGT 59.717 52.381 0.00 0.00 0.00 3.06
269 270 2.362736 CTGATGAGTGGGTTGGATGTG 58.637 52.381 0.00 0.00 0.00 3.21
270 271 1.984424 TGATGAGTGGGTTGGATGTGA 59.016 47.619 0.00 0.00 0.00 3.58
271 272 2.577563 TGATGAGTGGGTTGGATGTGAT 59.422 45.455 0.00 0.00 0.00 3.06
272 273 3.010472 TGATGAGTGGGTTGGATGTGATT 59.990 43.478 0.00 0.00 0.00 2.57
273 274 3.524095 TGAGTGGGTTGGATGTGATTT 57.476 42.857 0.00 0.00 0.00 2.17
274 275 4.649267 TGAGTGGGTTGGATGTGATTTA 57.351 40.909 0.00 0.00 0.00 1.40
275 276 4.991776 TGAGTGGGTTGGATGTGATTTAA 58.008 39.130 0.00 0.00 0.00 1.52
276 277 5.389520 TGAGTGGGTTGGATGTGATTTAAA 58.610 37.500 0.00 0.00 0.00 1.52
277 278 5.835819 TGAGTGGGTTGGATGTGATTTAAAA 59.164 36.000 0.00 0.00 0.00 1.52
278 279 6.325028 TGAGTGGGTTGGATGTGATTTAAAAA 59.675 34.615 0.00 0.00 0.00 1.94
302 303 8.728337 AAAAATAAGTAATACTCCCTCCGTTC 57.272 34.615 0.00 0.00 0.00 3.95
303 304 6.416631 AATAAGTAATACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
304 305 3.684408 AGTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
305 306 4.803329 AGTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
306 307 5.134725 AGTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
307 308 5.522641 AGTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
308 309 6.141790 AGTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
309 310 7.300658 AGTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
310 311 7.786464 AGTAATACTCCCTCCGTTCCTAAATAA 59.214 37.037 0.00 0.00 0.00 1.40
311 312 7.628501 AATACTCCCTCCGTTCCTAAATAAT 57.371 36.000 0.00 0.00 0.00 1.28
312 313 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
313 314 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
314 315 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
315 316 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
316 317 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
317 318 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
318 319 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
319 320 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
320 321 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
321 322 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
322 323 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
323 324 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
336 337 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
337 338 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
338 339 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
339 340 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
340 341 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
341 342 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
342 343 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
343 344 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
344 345 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
346 347 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
347 348 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
348 349 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
349 350 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
350 351 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
351 352 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
352 353 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
353 354 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
354 355 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
355 356 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
356 357 6.708949 ACAAGTGACTACATACGGAACAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
357 358 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
358 359 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
359 360 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
360 361 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
361 362 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
362 363 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
363 364 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
364 365 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
365 366 7.214467 ACATACGGAACAAAATGAGTGAATT 57.786 32.000 0.00 0.00 0.00 2.17
366 367 7.657336 ACATACGGAACAAAATGAGTGAATTT 58.343 30.769 0.00 0.00 0.00 1.82
367 368 8.788806 ACATACGGAACAAAATGAGTGAATTTA 58.211 29.630 0.00 0.00 0.00 1.40
368 369 9.061610 CATACGGAACAAAATGAGTGAATTTAC 57.938 33.333 0.00 0.00 0.00 2.01
369 370 7.033530 ACGGAACAAAATGAGTGAATTTACA 57.966 32.000 2.93 0.00 0.00 2.41
370 371 6.915843 ACGGAACAAAATGAGTGAATTTACAC 59.084 34.615 2.93 0.00 40.60 2.90
384 385 9.561069 AGTGAATTTACACTCTAAAACATGTCT 57.439 29.630 0.00 0.00 46.36 3.41
393 394 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
394 395 9.809096 CACTCTAAAACATGTCTACATACATCT 57.191 33.333 0.00 0.00 38.01 2.90
395 396 9.809096 ACTCTAAAACATGTCTACATACATCTG 57.191 33.333 0.00 0.00 38.01 2.90
396 397 9.809096 CTCTAAAACATGTCTACATACATCTGT 57.191 33.333 0.00 0.00 38.01 3.41
413 414 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
414 415 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
415 416 7.550551 ACATCTGTATGTTGTAGTCCATTTGAG 59.449 37.037 0.00 0.00 44.07 3.02
416 417 7.239763 TCTGTATGTTGTAGTCCATTTGAGA 57.760 36.000 0.00 0.00 0.00 3.27
417 418 7.851228 TCTGTATGTTGTAGTCCATTTGAGAT 58.149 34.615 0.00 0.00 0.00 2.75
418 419 7.765819 TCTGTATGTTGTAGTCCATTTGAGATG 59.234 37.037 0.00 0.00 0.00 2.90
419 420 6.823182 TGTATGTTGTAGTCCATTTGAGATGG 59.177 38.462 0.00 0.00 40.48 3.51
420 421 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
421 422 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
422 423 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
423 424 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
424 425 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
425 426 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
426 427 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
427 428 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
428 429 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
429 430 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
431 432 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
432 433 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
433 434 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
434 435 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
435 436 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
436 437 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
437 438 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
438 439 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
439 440 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
440 441 6.773976 TGGCTAGAAAGACAATTATTTGGG 57.226 37.500 0.00 0.00 38.01 4.12
441 442 6.489603 TGGCTAGAAAGACAATTATTTGGGA 58.510 36.000 0.00 0.00 38.01 4.37
442 443 6.951198 TGGCTAGAAAGACAATTATTTGGGAA 59.049 34.615 0.00 0.00 38.01 3.97
443 444 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
444 445 6.967199 GCTAGAAAGACAATTATTTGGGAACG 59.033 38.462 0.00 0.00 37.15 3.95
445 446 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
446 447 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
447 448 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
448 449 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
449 450 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
450 451 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
451 452 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
457 458 4.474303 TTGGGAACGGAGGGAGTATATA 57.526 45.455 0.00 0.00 0.00 0.86
483 484 2.686915 CAATTCTTGGAAGGCTAGGCTG 59.313 50.000 20.99 6.92 0.00 4.85
485 486 1.656587 TCTTGGAAGGCTAGGCTGAA 58.343 50.000 20.99 11.88 0.00 3.02
486 487 1.279271 TCTTGGAAGGCTAGGCTGAAC 59.721 52.381 20.99 13.23 0.00 3.18
494 495 0.742635 GCTAGGCTGAACCAGAGTGC 60.743 60.000 0.00 0.00 43.14 4.40
539 540 1.207089 GCATATATAGCCACGGAGCCA 59.793 52.381 0.00 0.00 0.00 4.75
553 568 2.659428 GGAGCCAATTTGTCCTAGCAT 58.341 47.619 0.00 0.00 0.00 3.79
558 573 5.128919 AGCCAATTTGTCCTAGCATCTAAG 58.871 41.667 0.00 0.00 0.00 2.18
563 578 9.342308 CCAATTTGTCCTAGCATCTAAGATAAA 57.658 33.333 0.00 0.00 0.00 1.40
591 608 2.442236 ATGCTGGAAATTCCGGTCAT 57.558 45.000 20.86 19.51 44.85 3.06
621 638 2.367567 ACGGGGATCGCATAAATACACT 59.632 45.455 12.32 0.00 43.89 3.55
637 654 1.203928 CACTCGCATCCACTCGATTC 58.796 55.000 0.00 0.00 33.98 2.52
734 766 3.015753 GACCCCCTCCTCCAACCC 61.016 72.222 0.00 0.00 0.00 4.11
737 769 4.371231 CCCCTCCTCCAACCCCCT 62.371 72.222 0.00 0.00 0.00 4.79
738 770 2.692741 CCCTCCTCCAACCCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
739 771 2.692741 CCTCCTCCAACCCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
740 772 2.456840 CTCCTCCAACCCCCTCCT 59.543 66.667 0.00 0.00 0.00 3.69
794 826 2.611800 AGCCTGGCTGGTGGATGA 60.612 61.111 22.71 0.00 37.57 2.92
867 899 4.462483 GCTTTCCACATACAATTCTTCCCA 59.538 41.667 0.00 0.00 0.00 4.37
881 913 1.006400 CTTCCCAAGCCCCTGAATCTT 59.994 52.381 0.00 0.00 0.00 2.40
928 977 1.067212 CTGCTGGTGGATAGGTACGTC 59.933 57.143 0.00 0.00 0.00 4.34
953 1002 2.111043 TAGGCATTAGGCGGCAGC 59.889 61.111 13.08 9.48 46.16 5.25
1180 1237 8.189460 CGAAGGTAATAACAACTAGTAGAAGCT 58.811 37.037 3.59 0.00 0.00 3.74
1181 1238 9.303537 GAAGGTAATAACAACTAGTAGAAGCTG 57.696 37.037 3.59 0.00 0.00 4.24
1273 1464 3.572642 TCTGTGGTCAAGAGGTACTTCA 58.427 45.455 7.82 0.00 41.55 3.02
1274 1465 3.321111 TCTGTGGTCAAGAGGTACTTCAC 59.679 47.826 7.82 0.00 41.55 3.18
1275 1466 3.305720 TGTGGTCAAGAGGTACTTCACT 58.694 45.455 7.82 0.00 41.55 3.41
1276 1467 3.709653 TGTGGTCAAGAGGTACTTCACTT 59.290 43.478 7.82 0.00 41.55 3.16
1278 1469 5.542635 TGTGGTCAAGAGGTACTTCACTTAT 59.457 40.000 7.82 0.00 41.55 1.73
1308 1509 8.413229 TCTTCTTACCCTTTTTGAATTCACTTG 58.587 33.333 7.89 0.00 0.00 3.16
1311 1512 4.948847 ACCCTTTTTGAATTCACTTGCTC 58.051 39.130 7.89 0.00 0.00 4.26
1314 1515 5.693555 CCCTTTTTGAATTCACTTGCTCTTC 59.306 40.000 7.89 0.00 0.00 2.87
1339 1540 5.163311 TGTCAAGAACTCAAGATTCAGACCA 60.163 40.000 0.00 0.00 34.81 4.02
1361 1562 0.903454 TTCGGACTTCAGAGACCCCC 60.903 60.000 0.00 0.00 34.71 5.40
1369 1570 1.376037 CAGAGACCCCCGTTTGCTC 60.376 63.158 0.00 0.00 0.00 4.26
1375 4207 1.343142 GACCCCCGTTTGCTCAAAAAT 59.657 47.619 0.00 0.00 31.33 1.82
1381 4213 4.811557 CCCCGTTTGCTCAAAAATTGTTTA 59.188 37.500 0.00 0.00 31.33 2.01
1386 4218 8.973378 CCGTTTGCTCAAAAATTGTTTAGATTA 58.027 29.630 0.00 0.00 31.33 1.75
1490 4322 2.710377 AGCTTCATGTGGCATCGTTTA 58.290 42.857 13.18 0.00 0.00 2.01
1504 4336 4.554973 GCATCGTTTATGTTTTCAGAGCAC 59.445 41.667 0.00 0.00 37.93 4.40
1522 4354 7.915397 TCAGAGCACAAAATTCAGTACTTTTTC 59.085 33.333 0.00 0.00 0.00 2.29
1600 4456 1.179152 TCAATCAGTTGGGCTGCATG 58.821 50.000 0.50 0.00 44.66 4.06
1616 4472 2.032636 TGCATGCGCTGATTTATTCTCG 60.033 45.455 14.09 0.00 39.64 4.04
1668 4524 9.905713 AATATATGCTTCCTTGTGTTTTCTCTA 57.094 29.630 0.00 0.00 0.00 2.43
1711 4571 4.574674 TGGTGGCTCTGTATTTGATTCT 57.425 40.909 0.00 0.00 0.00 2.40
1712 4572 4.264253 TGGTGGCTCTGTATTTGATTCTG 58.736 43.478 0.00 0.00 0.00 3.02
1713 4573 4.263462 TGGTGGCTCTGTATTTGATTCTGT 60.263 41.667 0.00 0.00 0.00 3.41
1714 4574 4.702131 GGTGGCTCTGTATTTGATTCTGTT 59.298 41.667 0.00 0.00 0.00 3.16
1715 4575 5.880332 GGTGGCTCTGTATTTGATTCTGTTA 59.120 40.000 0.00 0.00 0.00 2.41
1716 4576 6.543831 GGTGGCTCTGTATTTGATTCTGTTAT 59.456 38.462 0.00 0.00 0.00 1.89
1717 4577 7.067494 GGTGGCTCTGTATTTGATTCTGTTATT 59.933 37.037 0.00 0.00 0.00 1.40
1718 4578 8.125448 GTGGCTCTGTATTTGATTCTGTTATTC 58.875 37.037 0.00 0.00 0.00 1.75
1719 4579 7.011389 TGGCTCTGTATTTGATTCTGTTATTCG 59.989 37.037 0.00 0.00 0.00 3.34
1724 4584 8.131455 TGTATTTGATTCTGTTATTCGAGCTC 57.869 34.615 2.73 2.73 0.00 4.09
1732 4592 4.876107 TCTGTTATTCGAGCTCAATTTCCC 59.124 41.667 15.40 0.00 0.00 3.97
1768 4640 0.108186 TCAATCCTCTGCGTTGCGAT 60.108 50.000 0.00 0.00 0.00 4.58
1836 4708 4.033776 CCACCAGCGACCACCCAT 62.034 66.667 0.00 0.00 0.00 4.00
1943 4818 2.672307 AAGGAGCAGCAGCAGCAC 60.672 61.111 12.92 5.55 45.49 4.40
1944 4819 4.719106 AGGAGCAGCAGCAGCACC 62.719 66.667 17.09 17.09 45.49 5.01
1946 4821 3.432588 GAGCAGCAGCAGCACCAG 61.433 66.667 12.92 0.00 45.49 4.00
1949 4824 2.746671 CAGCAGCAGCACCAGGAG 60.747 66.667 3.17 0.00 45.49 3.69
1950 4825 4.719106 AGCAGCAGCACCAGGAGC 62.719 66.667 3.17 0.00 45.49 4.70
1952 4827 2.281970 CAGCAGCACCAGGAGCAA 60.282 61.111 11.90 0.00 0.00 3.91
2036 4911 2.046023 CATCGCTTCCACTGGGCA 60.046 61.111 0.00 0.00 0.00 5.36
2121 4996 0.603569 CGACCACCAGCTTGTCTAGT 59.396 55.000 0.00 0.00 0.00 2.57
2129 5004 1.457303 CAGCTTGTCTAGTGTGCGTTC 59.543 52.381 0.00 0.00 0.00 3.95
2136 5011 1.053048 CTAGTGTGCGTTCGTGTCTG 58.947 55.000 0.00 0.00 0.00 3.51
2353 5241 2.515991 CCAAGCGTGTGGTGGTGT 60.516 61.111 0.00 0.00 33.63 4.16
2380 5268 2.125147 CGTGTCCGGCCATGTCAT 60.125 61.111 2.24 0.00 0.00 3.06
2407 5296 2.811317 GAGTTGCTCGCTCGGTGG 60.811 66.667 0.00 0.00 0.00 4.61
2423 5312 4.778143 GGACCGCATCTGGCCGTT 62.778 66.667 0.00 0.00 40.31 4.44
2428 5317 1.656818 CCGCATCTGGCCGTTGATTT 61.657 55.000 0.00 0.00 40.31 2.17
2489 5381 1.600413 GCTTTCTTTGTGAGCGTTGGG 60.600 52.381 0.00 0.00 0.00 4.12
2510 5406 2.671596 CAATTTACCACCAAGTTGCGG 58.328 47.619 7.76 7.76 0.00 5.69
2525 5421 2.833533 GCGGTTTGCTGTGTGCTGA 61.834 57.895 0.00 0.00 43.37 4.26
2531 5427 4.191544 GGTTTGCTGTGTGCTGATATCTA 58.808 43.478 3.98 0.00 43.37 1.98
2560 5456 6.671614 TCATTTCCAAAATATAAGACGCGT 57.328 33.333 13.85 13.85 0.00 6.01
2563 5459 7.483375 TCATTTCCAAAATATAAGACGCGTTTG 59.517 33.333 15.53 11.25 0.00 2.93
2934 5831 0.802494 GATTAGGCACAACCCACACG 59.198 55.000 0.00 0.00 40.58 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.544686 CAACGCACCAGAACAACAAC 58.455 50.000 0.00 0.00 0.00 3.32
1 2 0.453793 CCAACGCACCAGAACAACAA 59.546 50.000 0.00 0.00 0.00 2.83
2 3 0.678366 ACCAACGCACCAGAACAACA 60.678 50.000 0.00 0.00 0.00 3.33
3 4 0.028902 GACCAACGCACCAGAACAAC 59.971 55.000 0.00 0.00 0.00 3.32
4 5 1.098712 GGACCAACGCACCAGAACAA 61.099 55.000 0.00 0.00 0.00 2.83
5 6 1.525077 GGACCAACGCACCAGAACA 60.525 57.895 0.00 0.00 0.00 3.18
6 7 0.034337 TAGGACCAACGCACCAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
7 8 0.981183 ATAGGACCAACGCACCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
8 9 0.249120 CATAGGACCAACGCACCAGA 59.751 55.000 0.00 0.00 0.00 3.86
9 10 0.744414 CCATAGGACCAACGCACCAG 60.744 60.000 0.00 0.00 0.00 4.00
10 11 1.298340 CCATAGGACCAACGCACCA 59.702 57.895 0.00 0.00 0.00 4.17
11 12 1.451387 CCCATAGGACCAACGCACC 60.451 63.158 0.00 0.00 33.47 5.01
12 13 1.451387 CCCCATAGGACCAACGCAC 60.451 63.158 0.00 0.00 38.24 5.34
13 14 1.906105 GACCCCATAGGACCAACGCA 61.906 60.000 0.00 0.00 39.89 5.24
14 15 1.153229 GACCCCATAGGACCAACGC 60.153 63.158 0.00 0.00 39.89 4.84
15 16 0.909623 AAGACCCCATAGGACCAACG 59.090 55.000 0.00 0.00 39.89 4.10
16 17 2.158798 GCTAAGACCCCATAGGACCAAC 60.159 54.545 0.00 0.00 39.89 3.77
17 18 2.124411 GCTAAGACCCCATAGGACCAA 58.876 52.381 0.00 0.00 39.89 3.67
18 19 1.009060 TGCTAAGACCCCATAGGACCA 59.991 52.381 0.00 0.00 39.89 4.02
19 20 1.416772 GTGCTAAGACCCCATAGGACC 59.583 57.143 0.00 0.00 39.89 4.46
20 21 1.068741 CGTGCTAAGACCCCATAGGAC 59.931 57.143 0.00 0.00 39.89 3.85
21 22 1.063492 TCGTGCTAAGACCCCATAGGA 60.063 52.381 0.00 0.00 39.89 2.94
22 23 1.068741 GTCGTGCTAAGACCCCATAGG 59.931 57.143 0.00 0.00 43.78 2.57
23 24 1.269102 CGTCGTGCTAAGACCCCATAG 60.269 57.143 0.00 0.00 35.33 2.23
24 25 0.742505 CGTCGTGCTAAGACCCCATA 59.257 55.000 0.00 0.00 35.33 2.74
25 26 1.515954 CGTCGTGCTAAGACCCCAT 59.484 57.895 0.00 0.00 35.33 4.00
26 27 2.642254 CCGTCGTGCTAAGACCCCA 61.642 63.158 0.00 0.00 35.33 4.96
27 28 2.183555 CCGTCGTGCTAAGACCCC 59.816 66.667 0.00 0.00 35.33 4.95
28 29 2.502692 AAGCCGTCGTGCTAAGACCC 62.503 60.000 8.36 0.00 41.80 4.46
29 30 1.077089 GAAGCCGTCGTGCTAAGACC 61.077 60.000 8.36 0.00 41.80 3.85
30 31 0.109226 AGAAGCCGTCGTGCTAAGAC 60.109 55.000 8.36 0.00 41.80 3.01
31 32 0.170561 GAGAAGCCGTCGTGCTAAGA 59.829 55.000 8.36 0.00 41.80 2.10
32 33 1.134530 CGAGAAGCCGTCGTGCTAAG 61.135 60.000 8.36 0.00 41.80 2.18
33 34 1.154093 CGAGAAGCCGTCGTGCTAA 60.154 57.895 8.36 0.00 41.80 3.09
34 35 2.036571 TCGAGAAGCCGTCGTGCTA 61.037 57.895 8.36 0.00 41.80 3.49
35 36 3.362797 TCGAGAAGCCGTCGTGCT 61.363 61.111 2.81 2.81 45.43 4.40
36 37 3.173240 GTCGAGAAGCCGTCGTGC 61.173 66.667 0.00 0.00 38.60 5.34
37 38 1.797933 CAGTCGAGAAGCCGTCGTG 60.798 63.158 0.00 0.00 38.60 4.35
38 39 2.185103 GACAGTCGAGAAGCCGTCGT 62.185 60.000 0.00 0.00 38.60 4.34
39 40 1.512310 GACAGTCGAGAAGCCGTCG 60.512 63.158 0.00 0.00 38.84 5.12
40 41 1.085091 TAGACAGTCGAGAAGCCGTC 58.915 55.000 0.00 0.00 0.00 4.79
41 42 0.803740 GTAGACAGTCGAGAAGCCGT 59.196 55.000 0.00 0.00 0.00 5.68
42 43 1.088306 AGTAGACAGTCGAGAAGCCG 58.912 55.000 0.00 0.00 0.00 5.52
43 44 3.008330 TGTAGTAGACAGTCGAGAAGCC 58.992 50.000 0.00 0.00 32.86 4.35
44 45 4.083431 TGTTGTAGTAGACAGTCGAGAAGC 60.083 45.833 0.00 0.00 39.88 3.86
45 46 5.608676 TGTTGTAGTAGACAGTCGAGAAG 57.391 43.478 0.00 0.00 39.88 2.85
46 47 6.381481 TTTGTTGTAGTAGACAGTCGAGAA 57.619 37.500 0.00 0.00 39.88 2.87
47 48 6.570672 ATTTGTTGTAGTAGACAGTCGAGA 57.429 37.500 0.00 0.00 39.88 4.04
48 49 6.641314 ACAATTTGTTGTAGTAGACAGTCGAG 59.359 38.462 0.00 0.00 39.88 4.04
49 50 6.419710 CACAATTTGTTGTAGTAGACAGTCGA 59.580 38.462 0.00 0.00 39.88 4.20
50 51 6.581370 CACAATTTGTTGTAGTAGACAGTCG 58.419 40.000 0.00 0.00 39.88 4.18
51 52 6.363473 GCACAATTTGTTGTAGTAGACAGTC 58.637 40.000 0.00 0.00 39.88 3.51
52 53 5.238650 GGCACAATTTGTTGTAGTAGACAGT 59.761 40.000 0.00 0.00 39.88 3.55
53 54 5.334879 GGGCACAATTTGTTGTAGTAGACAG 60.335 44.000 0.00 0.00 39.88 3.51
54 55 4.517453 GGGCACAATTTGTTGTAGTAGACA 59.483 41.667 0.00 0.00 35.78 3.41
55 56 4.378046 CGGGCACAATTTGTTGTAGTAGAC 60.378 45.833 0.00 0.00 33.17 2.59
56 57 3.749088 CGGGCACAATTTGTTGTAGTAGA 59.251 43.478 0.00 0.00 33.17 2.59
57 58 3.119990 CCGGGCACAATTTGTTGTAGTAG 60.120 47.826 0.00 0.00 33.17 2.57
58 59 2.814919 CCGGGCACAATTTGTTGTAGTA 59.185 45.455 0.00 0.00 33.17 1.82
59 60 1.611491 CCGGGCACAATTTGTTGTAGT 59.389 47.619 0.00 0.00 33.17 2.73
60 61 1.668628 GCCGGGCACAATTTGTTGTAG 60.669 52.381 15.62 0.00 33.17 2.74
61 62 0.315568 GCCGGGCACAATTTGTTGTA 59.684 50.000 15.62 0.00 33.17 2.41
62 63 1.068921 GCCGGGCACAATTTGTTGT 59.931 52.632 15.62 0.00 35.14 3.32
63 64 0.667184 GAGCCGGGCACAATTTGTTG 60.667 55.000 23.09 0.00 0.00 3.33
64 65 1.665442 GAGCCGGGCACAATTTGTT 59.335 52.632 23.09 0.00 0.00 2.83
65 66 2.275380 GGAGCCGGGCACAATTTGT 61.275 57.895 23.09 0.00 0.00 2.83
66 67 2.573340 GGAGCCGGGCACAATTTG 59.427 61.111 23.09 0.00 0.00 2.32
67 68 3.061848 CGGAGCCGGGCACAATTT 61.062 61.111 23.09 0.00 35.56 1.82
84 85 4.933064 CATCGACGCTCCCTCGCC 62.933 72.222 0.00 0.00 0.00 5.54
85 86 3.889044 TCATCGACGCTCCCTCGC 61.889 66.667 0.00 0.00 0.00 5.03
86 87 2.024871 GTCATCGACGCTCCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
112 113 1.730446 GCACTGAAATGAGCCGAAAGC 60.730 52.381 0.00 0.00 44.25 3.51
113 114 1.808945 AGCACTGAAATGAGCCGAAAG 59.191 47.619 0.00 0.00 0.00 2.62
114 115 1.896220 AGCACTGAAATGAGCCGAAA 58.104 45.000 0.00 0.00 0.00 3.46
115 116 1.536766 CAAGCACTGAAATGAGCCGAA 59.463 47.619 0.00 0.00 0.00 4.30
116 117 1.159285 CAAGCACTGAAATGAGCCGA 58.841 50.000 0.00 0.00 0.00 5.54
117 118 0.877071 ACAAGCACTGAAATGAGCCG 59.123 50.000 0.00 0.00 0.00 5.52
118 119 3.077359 ACTACAAGCACTGAAATGAGCC 58.923 45.455 0.00 0.00 0.00 4.70
119 120 3.748048 TGACTACAAGCACTGAAATGAGC 59.252 43.478 0.00 0.00 0.00 4.26
120 121 5.220359 CGATGACTACAAGCACTGAAATGAG 60.220 44.000 0.00 0.00 0.00 2.90
121 122 4.627035 CGATGACTACAAGCACTGAAATGA 59.373 41.667 0.00 0.00 0.00 2.57
122 123 4.726021 GCGATGACTACAAGCACTGAAATG 60.726 45.833 0.00 0.00 35.16 2.32
123 124 3.372206 GCGATGACTACAAGCACTGAAAT 59.628 43.478 0.00 0.00 35.16 2.17
124 125 2.736721 GCGATGACTACAAGCACTGAAA 59.263 45.455 0.00 0.00 35.16 2.69
125 126 2.029020 AGCGATGACTACAAGCACTGAA 60.029 45.455 0.00 0.00 36.63 3.02
126 127 1.546029 AGCGATGACTACAAGCACTGA 59.454 47.619 0.00 0.00 36.63 3.41
127 128 2.001812 AGCGATGACTACAAGCACTG 57.998 50.000 0.00 0.00 36.63 3.66
128 129 2.099921 CCTAGCGATGACTACAAGCACT 59.900 50.000 0.00 0.00 36.63 4.40
129 130 2.159226 ACCTAGCGATGACTACAAGCAC 60.159 50.000 0.00 0.00 36.63 4.40
130 131 2.100197 ACCTAGCGATGACTACAAGCA 58.900 47.619 0.00 0.00 36.63 3.91
131 132 2.159226 ACACCTAGCGATGACTACAAGC 60.159 50.000 0.00 0.00 35.24 4.01
132 133 3.784701 ACACCTAGCGATGACTACAAG 57.215 47.619 0.00 0.00 0.00 3.16
133 134 3.762288 AGAACACCTAGCGATGACTACAA 59.238 43.478 0.00 0.00 0.00 2.41
134 135 3.353557 AGAACACCTAGCGATGACTACA 58.646 45.455 0.00 0.00 0.00 2.74
135 136 4.552378 CGTAGAACACCTAGCGATGACTAC 60.552 50.000 0.00 0.00 0.00 2.73
136 137 3.558829 CGTAGAACACCTAGCGATGACTA 59.441 47.826 0.00 0.00 0.00 2.59
137 138 2.355132 CGTAGAACACCTAGCGATGACT 59.645 50.000 0.00 0.00 0.00 3.41
138 139 2.353889 TCGTAGAACACCTAGCGATGAC 59.646 50.000 0.00 0.00 31.20 3.06
139 140 2.635714 TCGTAGAACACCTAGCGATGA 58.364 47.619 0.00 0.00 31.20 2.92
140 141 3.416119 TTCGTAGAACACCTAGCGATG 57.584 47.619 0.00 0.00 45.90 3.84
141 142 3.884091 AGATTCGTAGAACACCTAGCGAT 59.116 43.478 0.00 0.00 45.90 4.58
142 143 3.064958 CAGATTCGTAGAACACCTAGCGA 59.935 47.826 0.00 0.00 45.90 4.93
143 144 3.364062 CAGATTCGTAGAACACCTAGCG 58.636 50.000 0.00 0.00 45.90 4.26
144 145 3.130693 ACCAGATTCGTAGAACACCTAGC 59.869 47.826 0.00 0.00 45.90 3.42
145 146 4.985538 ACCAGATTCGTAGAACACCTAG 57.014 45.455 0.00 0.00 45.90 3.02
146 147 5.503927 ACTACCAGATTCGTAGAACACCTA 58.496 41.667 2.17 0.00 45.90 3.08
147 148 4.342359 ACTACCAGATTCGTAGAACACCT 58.658 43.478 2.17 0.00 45.90 4.00
148 149 4.715527 ACTACCAGATTCGTAGAACACC 57.284 45.455 2.17 0.00 45.90 4.16
149 150 8.699283 AAATTACTACCAGATTCGTAGAACAC 57.301 34.615 2.17 0.00 45.90 3.32
150 151 9.715121 AAAAATTACTACCAGATTCGTAGAACA 57.285 29.630 2.17 0.00 45.90 3.18
182 183 7.371159 TCATGACAGTACAACAAACACAAAAA 58.629 30.769 0.00 0.00 0.00 1.94
183 184 6.914259 TCATGACAGTACAACAAACACAAAA 58.086 32.000 0.00 0.00 0.00 2.44
184 185 6.502136 TCATGACAGTACAACAAACACAAA 57.498 33.333 0.00 0.00 0.00 2.83
185 186 6.691754 ATCATGACAGTACAACAAACACAA 57.308 33.333 0.00 0.00 0.00 3.33
186 187 6.459435 CCAATCATGACAGTACAACAAACACA 60.459 38.462 0.00 0.00 0.00 3.72
187 188 5.914635 CCAATCATGACAGTACAACAAACAC 59.085 40.000 0.00 0.00 0.00 3.32
188 189 5.825151 TCCAATCATGACAGTACAACAAACA 59.175 36.000 0.00 0.00 0.00 2.83
189 190 6.204688 TCTCCAATCATGACAGTACAACAAAC 59.795 38.462 0.00 0.00 0.00 2.93
190 191 6.295249 TCTCCAATCATGACAGTACAACAAA 58.705 36.000 0.00 0.00 0.00 2.83
191 192 5.863965 TCTCCAATCATGACAGTACAACAA 58.136 37.500 0.00 0.00 0.00 2.83
192 193 5.482163 TCTCCAATCATGACAGTACAACA 57.518 39.130 0.00 0.00 0.00 3.33
193 194 6.108687 TCATCTCCAATCATGACAGTACAAC 58.891 40.000 0.00 0.00 0.00 3.32
194 195 6.298441 TCATCTCCAATCATGACAGTACAA 57.702 37.500 0.00 0.00 0.00 2.41
195 196 5.937975 TCATCTCCAATCATGACAGTACA 57.062 39.130 0.00 0.00 0.00 2.90
196 197 8.363390 TCTATTCATCTCCAATCATGACAGTAC 58.637 37.037 0.00 0.00 0.00 2.73
197 198 8.482852 TCTATTCATCTCCAATCATGACAGTA 57.517 34.615 0.00 0.00 0.00 2.74
198 199 7.370905 TCTATTCATCTCCAATCATGACAGT 57.629 36.000 0.00 0.00 0.00 3.55
199 200 7.275999 CGATCTATTCATCTCCAATCATGACAG 59.724 40.741 0.00 0.00 0.00 3.51
200 201 7.039504 TCGATCTATTCATCTCCAATCATGACA 60.040 37.037 0.00 0.00 0.00 3.58
201 202 7.318893 TCGATCTATTCATCTCCAATCATGAC 58.681 38.462 0.00 0.00 0.00 3.06
202 203 7.472334 TCGATCTATTCATCTCCAATCATGA 57.528 36.000 0.00 0.00 0.00 3.07
203 204 8.543862 TTTCGATCTATTCATCTCCAATCATG 57.456 34.615 0.00 0.00 0.00 3.07
204 205 8.373981 ACTTTCGATCTATTCATCTCCAATCAT 58.626 33.333 0.00 0.00 0.00 2.45
205 206 7.730084 ACTTTCGATCTATTCATCTCCAATCA 58.270 34.615 0.00 0.00 0.00 2.57
206 207 8.600449 AACTTTCGATCTATTCATCTCCAATC 57.400 34.615 0.00 0.00 0.00 2.67
207 208 8.970859 AAACTTTCGATCTATTCATCTCCAAT 57.029 30.769 0.00 0.00 0.00 3.16
208 209 8.040727 TGAAACTTTCGATCTATTCATCTCCAA 58.959 33.333 0.00 0.00 0.00 3.53
209 210 7.555965 TGAAACTTTCGATCTATTCATCTCCA 58.444 34.615 0.00 0.00 0.00 3.86
210 211 8.425577 TTGAAACTTTCGATCTATTCATCTCC 57.574 34.615 5.44 0.00 0.00 3.71
242 243 3.834231 CCAACCCACTCATCAGGATTTTT 59.166 43.478 0.00 0.00 0.00 1.94
243 244 3.075882 TCCAACCCACTCATCAGGATTTT 59.924 43.478 0.00 0.00 0.00 1.82
244 245 2.649312 TCCAACCCACTCATCAGGATTT 59.351 45.455 0.00 0.00 0.00 2.17
245 246 2.278245 TCCAACCCACTCATCAGGATT 58.722 47.619 0.00 0.00 0.00 3.01
246 247 1.971149 TCCAACCCACTCATCAGGAT 58.029 50.000 0.00 0.00 0.00 3.24
247 248 1.561076 CATCCAACCCACTCATCAGGA 59.439 52.381 0.00 0.00 0.00 3.86
248 249 1.283029 ACATCCAACCCACTCATCAGG 59.717 52.381 0.00 0.00 0.00 3.86
249 250 2.026915 TCACATCCAACCCACTCATCAG 60.027 50.000 0.00 0.00 0.00 2.90
250 251 1.984424 TCACATCCAACCCACTCATCA 59.016 47.619 0.00 0.00 0.00 3.07
251 252 2.787473 TCACATCCAACCCACTCATC 57.213 50.000 0.00 0.00 0.00 2.92
252 253 3.744940 AATCACATCCAACCCACTCAT 57.255 42.857 0.00 0.00 0.00 2.90
253 254 3.524095 AAATCACATCCAACCCACTCA 57.476 42.857 0.00 0.00 0.00 3.41
254 255 5.975693 TTTAAATCACATCCAACCCACTC 57.024 39.130 0.00 0.00 0.00 3.51
255 256 6.739331 TTTTTAAATCACATCCAACCCACT 57.261 33.333 0.00 0.00 0.00 4.00
277 278 7.772292 GGAACGGAGGGAGTATTACTTATTTTT 59.228 37.037 0.00 0.00 0.00 1.94
278 279 7.126879 AGGAACGGAGGGAGTATTACTTATTTT 59.873 37.037 0.00 0.00 0.00 1.82
279 280 6.614496 AGGAACGGAGGGAGTATTACTTATTT 59.386 38.462 0.00 0.00 0.00 1.40
280 281 6.141790 AGGAACGGAGGGAGTATTACTTATT 58.858 40.000 0.00 0.00 0.00 1.40
281 282 5.713807 AGGAACGGAGGGAGTATTACTTAT 58.286 41.667 0.00 0.00 0.00 1.73
282 283 5.134725 AGGAACGGAGGGAGTATTACTTA 57.865 43.478 0.00 0.00 0.00 2.24
283 284 3.991683 AGGAACGGAGGGAGTATTACTT 58.008 45.455 0.00 0.00 0.00 2.24
284 285 3.684408 AGGAACGGAGGGAGTATTACT 57.316 47.619 0.00 0.00 0.00 2.24
285 286 5.859205 TTTAGGAACGGAGGGAGTATTAC 57.141 43.478 0.00 0.00 0.00 1.89
286 287 8.731591 ATTATTTAGGAACGGAGGGAGTATTA 57.268 34.615 0.00 0.00 0.00 0.98
287 288 7.628501 ATTATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
288 289 7.072076 ACAATTATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
289 290 6.384886 ACAATTATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
290 291 5.191124 ACAATTATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
291 292 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
292 293 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
293 294 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
294 295 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
295 296 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
296 297 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
297 298 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
310 311 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
311 312 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
312 313 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
313 314 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
314 315 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
315 316 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
316 317 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
317 318 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
318 319 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
319 320 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
320 321 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
321 322 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
322 323 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
323 324 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
324 325 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
325 326 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
326 327 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
327 328 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
328 329 5.221283 TGTTCCGTATGTAGTCACTTGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
329 330 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
330 331 5.204409 TGTTCCGTATGTAGTCACTTGTT 57.796 39.130 0.00 0.00 0.00 2.83
331 332 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
332 333 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
333 334 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
334 335 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
335 336 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
336 337 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
337 338 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
338 339 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
339 340 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
340 341 7.915293 ATTCACTCATTTTGTTCCGTATGTA 57.085 32.000 0.00 0.00 0.00 2.29
341 342 6.817765 ATTCACTCATTTTGTTCCGTATGT 57.182 33.333 0.00 0.00 0.00 2.29
342 343 9.061610 GTAAATTCACTCATTTTGTTCCGTATG 57.938 33.333 0.00 0.00 0.00 2.39
343 344 8.788806 TGTAAATTCACTCATTTTGTTCCGTAT 58.211 29.630 0.00 0.00 0.00 3.06
344 345 8.071368 GTGTAAATTCACTCATTTTGTTCCGTA 58.929 33.333 0.00 0.00 35.68 4.02
345 346 6.915843 GTGTAAATTCACTCATTTTGTTCCGT 59.084 34.615 0.00 0.00 35.68 4.69
346 347 7.138736 AGTGTAAATTCACTCATTTTGTTCCG 58.861 34.615 0.00 0.00 44.07 4.30
367 368 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
368 369 9.809096 AGATGTATGTAGACATGTTTTAGAGTG 57.191 33.333 0.00 0.00 40.18 3.51
369 370 9.809096 CAGATGTATGTAGACATGTTTTAGAGT 57.191 33.333 0.00 0.00 40.18 3.24
370 371 9.809096 ACAGATGTATGTAGACATGTTTTAGAG 57.191 33.333 0.00 0.00 40.18 2.43
387 388 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
388 389 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
390 391 7.765819 TCTCAAATGGACTACAACATACAGATG 59.234 37.037 0.00 0.00 39.16 2.90
391 392 7.851228 TCTCAAATGGACTACAACATACAGAT 58.149 34.615 0.00 0.00 0.00 2.90
392 393 7.239763 TCTCAAATGGACTACAACATACAGA 57.760 36.000 0.00 0.00 0.00 3.41
393 394 7.011763 CCATCTCAAATGGACTACAACATACAG 59.988 40.741 0.00 0.00 41.64 2.74
394 395 6.823182 CCATCTCAAATGGACTACAACATACA 59.177 38.462 0.00 0.00 41.64 2.29
395 396 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
396 397 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
397 398 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
398 399 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
399 400 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
400 401 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
401 402 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
402 403 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
403 404 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
404 405 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
405 406 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
406 407 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
407 408 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
408 409 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
409 410 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
410 411 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
411 412 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
412 413 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
413 414 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
414 415 7.286316 CCCAAATAATTGTCTTTCTAGCCATCT 59.714 37.037 0.00 0.00 34.60 2.90
415 416 7.285401 TCCCAAATAATTGTCTTTCTAGCCATC 59.715 37.037 0.00 0.00 34.60 3.51
416 417 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
417 418 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
418 419 7.258441 GTTCCCAAATAATTGTCTTTCTAGCC 58.742 38.462 0.00 0.00 34.60 3.93
419 420 6.967199 CGTTCCCAAATAATTGTCTTTCTAGC 59.033 38.462 0.00 0.00 34.60 3.42
420 421 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
421 422 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
422 423 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
423 424 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
424 425 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
425 426 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
426 427 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
427 428 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
428 429 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
429 430 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
430 431 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
431 432 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
432 433 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
433 434 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
434 435 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
435 436 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
436 437 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
437 438 4.202749 ACATATATACTCCCTCCGTTCCCA 60.203 45.833 0.00 0.00 0.00 4.37
438 439 4.159879 CACATATATACTCCCTCCGTTCCC 59.840 50.000 0.00 0.00 0.00 3.97
439 440 4.381718 GCACATATATACTCCCTCCGTTCC 60.382 50.000 0.00 0.00 0.00 3.62
440 441 4.219944 TGCACATATATACTCCCTCCGTTC 59.780 45.833 0.00 0.00 0.00 3.95
441 442 4.157246 TGCACATATATACTCCCTCCGTT 58.843 43.478 0.00 0.00 0.00 4.44
442 443 3.774734 TGCACATATATACTCCCTCCGT 58.225 45.455 0.00 0.00 0.00 4.69
443 444 4.801330 TTGCACATATATACTCCCTCCG 57.199 45.455 0.00 0.00 0.00 4.63
444 445 6.951971 AGAATTGCACATATATACTCCCTCC 58.048 40.000 0.00 0.00 0.00 4.30
445 446 8.261492 CAAGAATTGCACATATATACTCCCTC 57.739 38.462 0.00 0.00 40.39 4.30
483 484 1.930908 GCTGCCATGCACTCTGGTTC 61.931 60.000 6.68 0.00 36.10 3.62
485 486 2.360852 GCTGCCATGCACTCTGGT 60.361 61.111 6.68 0.00 36.10 4.00
486 487 3.138798 GGCTGCCATGCACTCTGG 61.139 66.667 15.17 0.11 33.79 3.86
494 495 0.174845 CTGTTTGGATGGCTGCCATG 59.825 55.000 36.99 17.67 45.26 3.66
569 584 3.278574 TGACCGGAATTTCCAGCATAAG 58.721 45.455 9.46 0.00 35.91 1.73
570 585 3.358111 TGACCGGAATTTCCAGCATAA 57.642 42.857 9.46 0.00 35.91 1.90
571 586 3.213506 CATGACCGGAATTTCCAGCATA 58.786 45.455 9.46 0.00 35.91 3.14
577 594 1.102978 CCCACATGACCGGAATTTCC 58.897 55.000 9.46 5.28 0.00 3.13
621 638 1.441729 GGGAATCGAGTGGATGCGA 59.558 57.895 0.00 0.00 41.14 5.10
637 654 4.469227 ACTCTATTCATAGCATAGCTGGGG 59.531 45.833 0.00 0.00 40.10 4.96
734 766 2.823154 CGGCTTTCTATCTAGAGGAGGG 59.177 54.545 0.00 0.00 33.21 4.30
737 769 2.887783 CAGCGGCTTTCTATCTAGAGGA 59.112 50.000 0.00 0.00 33.21 3.71
738 770 2.609244 GCAGCGGCTTTCTATCTAGAGG 60.609 54.545 0.00 0.00 36.96 3.69
739 771 2.671596 GCAGCGGCTTTCTATCTAGAG 58.328 52.381 0.00 0.00 36.96 2.43
740 772 2.802787 GCAGCGGCTTTCTATCTAGA 57.197 50.000 0.00 0.00 36.96 2.43
782 814 2.592861 GCCGATCATCCACCAGCC 60.593 66.667 0.00 0.00 0.00 4.85
785 817 3.860605 CCGGCCGATCATCCACCA 61.861 66.667 30.73 0.00 0.00 4.17
789 821 1.669115 CATGTCCGGCCGATCATCC 60.669 63.158 30.73 7.72 0.00 3.51
794 826 4.221422 CGTCCATGTCCGGCCGAT 62.221 66.667 30.73 9.88 0.00 4.18
867 899 1.611673 CGTGTGAAGATTCAGGGGCTT 60.612 52.381 0.00 0.00 37.98 4.35
881 913 0.530744 CCAACCTAGCTAGCGTGTGA 59.469 55.000 15.74 0.00 0.00 3.58
928 977 1.063469 CGCCTAATGCCTACAAAACGG 59.937 52.381 0.00 0.00 36.24 4.44
953 1002 1.386525 AACAACACAGCACCTGCCTG 61.387 55.000 0.00 0.00 43.38 4.85
954 1003 1.076777 AACAACACAGCACCTGCCT 60.077 52.632 0.00 0.00 43.38 4.75
956 1005 0.248621 GACAACAACACAGCACCTGC 60.249 55.000 0.00 0.00 42.49 4.85
957 1006 0.027979 CGACAACAACACAGCACCTG 59.972 55.000 0.00 0.00 37.52 4.00
958 1007 0.392461 ACGACAACAACACAGCACCT 60.392 50.000 0.00 0.00 0.00 4.00
1099 1154 2.506217 GAACATGCCGAGCGACGA 60.506 61.111 0.00 0.00 45.77 4.20
1273 1464 8.002459 TCAAAAAGGGTAAGAAGAACCATAAGT 58.998 33.333 0.00 0.00 38.87 2.24
1274 1465 8.404107 TCAAAAAGGGTAAGAAGAACCATAAG 57.596 34.615 0.00 0.00 38.87 1.73
1275 1466 8.770010 TTCAAAAAGGGTAAGAAGAACCATAA 57.230 30.769 0.00 0.00 38.87 1.90
1276 1467 8.950007 ATTCAAAAAGGGTAAGAAGAACCATA 57.050 30.769 0.00 0.00 38.87 2.74
1278 1469 7.343316 TGAATTCAAAAAGGGTAAGAAGAACCA 59.657 33.333 5.45 0.00 38.87 3.67
1308 1509 4.626042 TCTTGAGTTCTTGACAGAAGAGC 58.374 43.478 0.00 0.00 39.86 4.09
1311 1512 6.927936 TCTGAATCTTGAGTTCTTGACAGAAG 59.072 38.462 0.00 0.00 39.86 2.85
1314 1515 5.407995 GGTCTGAATCTTGAGTTCTTGACAG 59.592 44.000 0.00 0.00 34.60 3.51
1339 1540 2.027100 GGGGTCTCTGAAGTCCGAATTT 60.027 50.000 0.00 0.00 32.07 1.82
1381 4213 6.211184 TGCCCATGTTTCTTGTTTCATAATCT 59.789 34.615 0.00 0.00 0.00 2.40
1386 4218 4.283978 TCATGCCCATGTTTCTTGTTTCAT 59.716 37.500 8.02 0.00 39.72 2.57
1490 4322 6.576185 ACTGAATTTTGTGCTCTGAAAACAT 58.424 32.000 0.00 0.00 0.00 2.71
1504 4336 7.081976 CCTACCCGAAAAAGTACTGAATTTTG 58.918 38.462 8.19 8.30 0.00 2.44
1522 4354 7.177921 TGAGTAAATTATATCACTCCCTACCCG 59.822 40.741 0.00 0.00 37.25 5.28
1600 4456 4.778842 TTTCTCGAGAATAAATCAGCGC 57.221 40.909 27.51 0.00 33.54 5.92
1692 4552 5.886960 AACAGAATCAAATACAGAGCCAC 57.113 39.130 0.00 0.00 0.00 5.01
1711 4571 4.394920 GTGGGAAATTGAGCTCGAATAACA 59.605 41.667 7.99 1.41 0.00 2.41
1712 4572 4.494199 CGTGGGAAATTGAGCTCGAATAAC 60.494 45.833 7.99 7.08 0.00 1.89
1713 4573 3.621268 CGTGGGAAATTGAGCTCGAATAA 59.379 43.478 7.99 0.00 0.00 1.40
1714 4574 3.118920 TCGTGGGAAATTGAGCTCGAATA 60.119 43.478 7.99 0.00 0.00 1.75
1715 4575 2.009774 CGTGGGAAATTGAGCTCGAAT 58.990 47.619 7.99 6.66 0.00 3.34
1716 4576 1.001520 TCGTGGGAAATTGAGCTCGAA 59.998 47.619 7.99 4.39 0.00 3.71
1717 4577 0.606096 TCGTGGGAAATTGAGCTCGA 59.394 50.000 6.01 6.01 0.00 4.04
1718 4578 1.128692 GTTCGTGGGAAATTGAGCTCG 59.871 52.381 9.64 0.00 33.05 5.03
1719 4579 1.128692 CGTTCGTGGGAAATTGAGCTC 59.871 52.381 6.82 6.82 33.05 4.09
1724 4584 3.765349 CACCGTTCGTGGGAAATTG 57.235 52.632 0.00 0.00 38.96 2.32
1732 4592 1.434555 TGATTAAGCCACCGTTCGTG 58.565 50.000 0.00 0.00 42.62 4.35
1835 4707 2.579201 CCTGCCGTGTCCTTCGAT 59.421 61.111 0.00 0.00 0.00 3.59
1836 4708 3.691342 CCCTGCCGTGTCCTTCGA 61.691 66.667 0.00 0.00 0.00 3.71
1874 4746 1.067495 CCTCTCTTCGTGAACACCTCC 60.067 57.143 0.00 0.00 0.00 4.30
1943 4818 2.435586 CACTCCGCTTGCTCCTGG 60.436 66.667 0.00 0.00 0.00 4.45
1944 4819 3.123620 GCACTCCGCTTGCTCCTG 61.124 66.667 0.00 0.00 37.00 3.86
1945 4820 4.749310 CGCACTCCGCTTGCTCCT 62.749 66.667 0.00 0.00 37.87 3.69
2021 4896 2.046023 CATGCCCAGTGGAAGCGA 60.046 61.111 11.95 0.00 0.00 4.93
2121 4996 2.964925 GGCAGACACGAACGCACA 60.965 61.111 0.00 0.00 0.00 4.57
2489 5381 2.058057 CGCAACTTGGTGGTAAATTGC 58.942 47.619 0.00 0.00 39.19 3.56
2531 5427 8.840321 CGTCTTATATTTTGGAAATGATGGAGT 58.160 33.333 0.00 0.00 0.00 3.85
2560 5456 6.499172 TGCGTCAAAATCATGTAAAGTCAAA 58.501 32.000 0.00 0.00 0.00 2.69
2563 5459 6.249260 GTCATGCGTCAAAATCATGTAAAGTC 59.751 38.462 0.00 0.00 38.82 3.01
2934 5831 0.310543 TGAAGTCACCGTTGCAATGC 59.689 50.000 13.42 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.