Multiple sequence alignment - TraesCS6B01G394700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G394700 chr6B 100.000 5253 0 0 1 5253 669997970 670003222 0.000000e+00 9701
1 TraesCS6B01G394700 chr6B 93.304 2957 131 21 260 3182 669497519 669494596 0.000000e+00 4301
2 TraesCS6B01G394700 chr6B 92.279 1347 77 8 1799 3122 670020070 670021412 0.000000e+00 1886
3 TraesCS6B01G394700 chr6B 89.556 1532 83 30 3181 4677 669494283 669492794 0.000000e+00 1871
4 TraesCS6B01G394700 chr6B 90.297 639 41 9 1188 1807 670019024 670019660 0.000000e+00 817
5 TraesCS6B01G394700 chr6B 93.878 343 20 1 4466 4807 670029556 670029898 2.800000e-142 516
6 TraesCS6B01G394700 chr6B 90.975 277 19 4 4807 5083 670029926 670030196 8.310000e-98 368
7 TraesCS6B01G394700 chr6B 99.375 160 0 1 100 259 719772532 719772690 6.660000e-74 289
8 TraesCS6B01G394700 chr6B 92.857 140 7 1 260 399 670018846 670018982 3.210000e-47 200
9 TraesCS6B01G394700 chr6B 96.296 81 3 0 1 81 687701518 687701438 3.300000e-27 134
10 TraesCS6B01G394700 chr6B 93.671 79 3 1 5177 5253 669556376 669556298 3.320000e-22 117
11 TraesCS6B01G394700 chr6D 92.037 2562 134 30 260 2779 445004047 445001514 0.000000e+00 3537
12 TraesCS6B01G394700 chr6D 93.283 923 59 1 3356 4278 444958390 444957471 0.000000e+00 1358
13 TraesCS6B01G394700 chr6D 93.283 923 59 2 3356 4278 444960969 444960050 0.000000e+00 1358
14 TraesCS6B01G394700 chr6D 93.174 923 60 2 3356 4278 444910413 444909494 0.000000e+00 1352
15 TraesCS6B01G394700 chr6D 93.174 923 60 2 3356 4278 444966146 444965227 0.000000e+00 1352
16 TraesCS6B01G394700 chr6D 93.174 923 60 2 3356 4278 444987584 444986665 0.000000e+00 1352
17 TraesCS6B01G394700 chr6D 93.174 923 60 2 3356 4278 444990105 444989186 0.000000e+00 1352
18 TraesCS6B01G394700 chr6D 93.074 924 60 3 3356 4278 444963578 444962658 0.000000e+00 1349
19 TraesCS6B01G394700 chr6D 93.066 923 61 2 3356 4278 444915498 444914579 0.000000e+00 1347
20 TraesCS6B01G394700 chr6D 93.053 547 33 5 2815 3358 445001520 445000976 0.000000e+00 795
21 TraesCS6B01G394700 chr6D 85.177 479 32 18 4359 4807 444891921 444891452 6.200000e-124 455
22 TraesCS6B01G394700 chr6D 93.284 134 7 2 3225 3358 444908479 444908348 4.150000e-46 196
23 TraesCS6B01G394700 chr6D 93.284 134 7 2 3225 3358 444913566 444913435 4.150000e-46 196
24 TraesCS6B01G394700 chr6D 93.284 134 7 2 3225 3358 444916135 444916004 4.150000e-46 196
25 TraesCS6B01G394700 chr6D 93.284 134 7 2 3225 3358 444918667 444918536 4.150000e-46 196
26 TraesCS6B01G394700 chr6D 93.284 134 7 2 3225 3358 444926860 444926729 4.150000e-46 196
27 TraesCS6B01G394700 chr6D 93.333 90 3 1 4275 4361 444894104 444894015 4.270000e-26 130
28 TraesCS6B01G394700 chr6D 93.333 90 3 1 4275 4361 444896618 444896529 4.270000e-26 130
29 TraesCS6B01G394700 chr6D 93.333 90 3 1 4275 4361 444899185 444899096 4.270000e-26 130
30 TraesCS6B01G394700 chr6D 93.333 90 3 1 4275 4361 444901692 444901603 4.270000e-26 130
31 TraesCS6B01G394700 chr6D 93.333 90 3 1 4275 4361 444904275 444904186 4.270000e-26 130
32 TraesCS6B01G394700 chr6A 90.113 2569 164 37 271 2778 591903134 591900595 0.000000e+00 3254
33 TraesCS6B01G394700 chr6A 90.470 1616 114 16 2815 4426 591900600 591899021 0.000000e+00 2095
34 TraesCS6B01G394700 chr6A 83.019 371 27 21 4463 4807 591899015 591898655 2.380000e-78 303
35 TraesCS6B01G394700 chr7A 100.000 159 0 0 103 261 39314190 39314032 1.430000e-75 294
36 TraesCS6B01G394700 chr7A 100.000 157 0 0 103 259 485182817 485182973 1.850000e-74 291
37 TraesCS6B01G394700 chr7A 90.816 98 6 3 1 98 533624110 533624016 1.540000e-25 128
38 TraesCS6B01G394700 chr7B 100.000 157 0 0 103 259 610585798 610585954 1.850000e-74 291
39 TraesCS6B01G394700 chrUn 99.367 158 1 0 105 262 183179770 183179613 2.390000e-73 287
40 TraesCS6B01G394700 chrUn 93.284 134 7 2 3225 3358 403215248 403215117 4.150000e-46 196
41 TraesCS6B01G394700 chrUn 93.284 134 7 2 3225 3358 421762901 421763032 4.150000e-46 196
42 TraesCS6B01G394700 chrUn 93.333 90 3 1 4275 4361 379073017 379072928 4.270000e-26 130
43 TraesCS6B01G394700 chrUn 93.333 90 3 1 4275 4361 403216223 403216134 4.270000e-26 130
44 TraesCS6B01G394700 chrUn 93.333 90 3 1 4275 4361 479234855 479234944 4.270000e-26 130
45 TraesCS6B01G394700 chr4A 100.000 155 0 0 105 259 36531826 36531980 2.390000e-73 287
46 TraesCS6B01G394700 chr2A 100.000 151 0 0 105 255 32553312 32553162 4.010000e-71 279
47 TraesCS6B01G394700 chr2A 97.500 80 2 0 1 80 61972942 61972863 2.550000e-28 137
48 TraesCS6B01G394700 chr4B 98.710 155 2 0 105 259 657307309 657307463 5.180000e-70 276
49 TraesCS6B01G394700 chr3A 98.710 155 2 0 105 259 141963242 141963088 5.180000e-70 276
50 TraesCS6B01G394700 chr1B 97.561 82 2 0 1 82 85434897 85434816 1.970000e-29 141
51 TraesCS6B01G394700 chr1B 95.294 85 2 2 1 85 37568485 37568567 3.300000e-27 134
52 TraesCS6B01G394700 chr5B 98.701 77 1 0 1 77 476018415 476018491 2.550000e-28 137
53 TraesCS6B01G394700 chr3B 98.701 77 1 0 1 77 39911631 39911555 2.550000e-28 137
54 TraesCS6B01G394700 chr3B 96.341 82 3 0 1 82 361013093 361013174 9.180000e-28 135
55 TraesCS6B01G394700 chr2B 98.701 77 1 0 1 77 739044753 739044829 2.550000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G394700 chr6B 669997970 670003222 5252 False 9701.000000 9701 100.000000 1 5253 1 chr6B.!!$F1 5252
1 TraesCS6B01G394700 chr6B 669492794 669497519 4725 True 3086.000000 4301 91.430000 260 4677 2 chr6B.!!$R3 4417
2 TraesCS6B01G394700 chr6B 670018846 670021412 2566 False 967.666667 1886 91.811000 260 3122 3 chr6B.!!$F3 2862
3 TraesCS6B01G394700 chr6B 670029556 670030196 640 False 442.000000 516 92.426500 4466 5083 2 chr6B.!!$F4 617
4 TraesCS6B01G394700 chr6D 445000976 445004047 3071 True 2166.000000 3537 92.545000 260 3358 2 chr6D.!!$R6 3098
5 TraesCS6B01G394700 chr6D 444957471 444966146 8675 True 1354.250000 1358 93.203500 3356 4278 4 chr6D.!!$R4 922
6 TraesCS6B01G394700 chr6D 444986665 444990105 3440 True 1352.000000 1352 93.174000 3356 4278 2 chr6D.!!$R5 922
7 TraesCS6B01G394700 chr6D 444908348 444918667 10319 True 580.500000 1352 93.229333 3225 4278 6 chr6D.!!$R3 1053
8 TraesCS6B01G394700 chr6A 591898655 591903134 4479 True 1884.000000 3254 87.867333 271 4807 3 chr6A.!!$R1 4536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.035439 ACTCCCATTACAACCAGCCG 60.035 55.0 0.00 0.00 0.00 5.52 F
197 198 0.182775 AGTTCGGGCCTGAAAACAGT 59.817 50.0 28.65 7.06 0.00 3.55 F
203 204 0.251165 GGCCTGAAAACAGTAGCCCA 60.251 55.0 0.00 0.00 34.23 5.36 F
752 779 0.322456 ATAATGCATGCCGCCCGTAT 60.322 50.0 16.68 0.00 41.33 3.06 F
1999 2501 0.454452 GTTTTGACCTTCGCGCCATC 60.454 55.0 0.00 0.00 0.00 3.51 F
3547 7424 0.875908 CACAGGCGACCCATATCGTG 60.876 60.0 0.00 0.00 44.13 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1213 1262 1.213430 ACGGTCCTTTCCAACCAAGAA 59.787 47.619 0.00 0.0 35.13 2.52 R
1951 2453 2.161855 GATGCCTTGTGACCATCAACA 58.838 47.619 0.00 0.0 36.32 3.33 R
2150 2652 3.400599 ATCCCCGGCGGTGTGAATC 62.401 63.158 26.32 0.0 0.00 2.52 R
2392 2894 0.809385 GTCCTCGTCCTCGTCATCAA 59.191 55.000 0.00 0.0 38.33 2.57 R
3591 7485 0.394762 GGGCATGGCAGAGATGTTCA 60.395 55.000 22.06 0.0 0.00 3.18 R
5152 21921 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.621428 ATTCTATGTCACCTCATCAAAGTTG 57.379 36.000 0.00 0.00 0.00 3.16
27 28 6.114187 TCTATGTCACCTCATCAAAGTTGT 57.886 37.500 0.00 0.00 0.00 3.32
28 29 6.166279 TCTATGTCACCTCATCAAAGTTGTC 58.834 40.000 0.00 0.00 0.00 3.18
29 30 4.422073 TGTCACCTCATCAAAGTTGTCT 57.578 40.909 0.00 0.00 0.00 3.41
30 31 5.545063 TGTCACCTCATCAAAGTTGTCTA 57.455 39.130 0.00 0.00 0.00 2.59
31 32 5.541845 TGTCACCTCATCAAAGTTGTCTAG 58.458 41.667 0.00 0.00 0.00 2.43
32 33 5.070446 TGTCACCTCATCAAAGTTGTCTAGT 59.930 40.000 0.00 0.00 0.00 2.57
33 34 5.992217 GTCACCTCATCAAAGTTGTCTAGTT 59.008 40.000 0.00 0.00 0.00 2.24
34 35 5.991606 TCACCTCATCAAAGTTGTCTAGTTG 59.008 40.000 0.00 0.00 0.00 3.16
35 36 5.180117 CACCTCATCAAAGTTGTCTAGTTGG 59.820 44.000 0.00 0.00 0.00 3.77
36 37 4.154918 CCTCATCAAAGTTGTCTAGTTGGC 59.845 45.833 0.00 0.00 0.00 4.52
37 38 4.713553 TCATCAAAGTTGTCTAGTTGGCA 58.286 39.130 0.00 0.00 0.00 4.92
38 39 5.316167 TCATCAAAGTTGTCTAGTTGGCAT 58.684 37.500 0.00 0.00 0.00 4.40
39 40 5.181811 TCATCAAAGTTGTCTAGTTGGCATG 59.818 40.000 0.00 0.00 0.00 4.06
40 41 3.253188 TCAAAGTTGTCTAGTTGGCATGC 59.747 43.478 9.90 9.90 0.00 4.06
41 42 2.566833 AGTTGTCTAGTTGGCATGCA 57.433 45.000 21.36 2.54 0.00 3.96
42 43 3.077484 AGTTGTCTAGTTGGCATGCAT 57.923 42.857 21.36 4.57 0.00 3.96
43 44 2.751259 AGTTGTCTAGTTGGCATGCATG 59.249 45.455 22.70 22.70 0.00 4.06
44 45 2.749076 GTTGTCTAGTTGGCATGCATGA 59.251 45.455 30.64 7.50 0.00 3.07
45 46 3.286329 TGTCTAGTTGGCATGCATGAT 57.714 42.857 30.64 11.73 0.00 2.45
46 47 4.420522 TGTCTAGTTGGCATGCATGATA 57.579 40.909 30.64 14.66 0.00 2.15
47 48 4.129380 TGTCTAGTTGGCATGCATGATAC 58.871 43.478 30.64 21.28 0.00 2.24
48 49 4.141642 TGTCTAGTTGGCATGCATGATACT 60.142 41.667 30.64 26.11 0.00 2.12
49 50 5.070313 TGTCTAGTTGGCATGCATGATACTA 59.930 40.000 30.64 25.87 0.00 1.82
50 51 5.636965 GTCTAGTTGGCATGCATGATACTAG 59.363 44.000 31.90 31.90 36.72 2.57
51 52 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
52 53 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
53 54 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
54 55 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
55 56 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
56 57 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
57 58 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
58 59 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
59 60 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
60 61 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
61 62 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
62 63 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
63 64 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
64 65 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
65 66 7.015098 GCATGATACTAGCTATGATACTCCCAT 59.985 40.741 0.00 0.00 0.00 4.00
66 67 8.922237 CATGATACTAGCTATGATACTCCCATT 58.078 37.037 0.00 0.00 0.00 3.16
68 69 9.409918 TGATACTAGCTATGATACTCCCATTAC 57.590 37.037 0.00 0.00 0.00 1.89
69 70 9.409918 GATACTAGCTATGATACTCCCATTACA 57.590 37.037 0.00 0.00 0.00 2.41
70 71 9.769677 ATACTAGCTATGATACTCCCATTACAA 57.230 33.333 0.00 0.00 0.00 2.41
71 72 7.897864 ACTAGCTATGATACTCCCATTACAAC 58.102 38.462 0.00 0.00 0.00 3.32
72 73 6.115448 AGCTATGATACTCCCATTACAACC 57.885 41.667 0.00 0.00 0.00 3.77
73 74 5.606749 AGCTATGATACTCCCATTACAACCA 59.393 40.000 0.00 0.00 0.00 3.67
74 75 5.934625 GCTATGATACTCCCATTACAACCAG 59.065 44.000 0.00 0.00 0.00 4.00
75 76 4.150897 TGATACTCCCATTACAACCAGC 57.849 45.455 0.00 0.00 0.00 4.85
76 77 3.118038 TGATACTCCCATTACAACCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
77 78 0.035439 ACTCCCATTACAACCAGCCG 60.035 55.000 0.00 0.00 0.00 5.52
78 79 0.035439 CTCCCATTACAACCAGCCGT 60.035 55.000 0.00 0.00 0.00 5.68
79 80 1.208535 CTCCCATTACAACCAGCCGTA 59.791 52.381 0.00 0.00 0.00 4.02
80 81 1.841277 TCCCATTACAACCAGCCGTAT 59.159 47.619 0.00 0.00 0.00 3.06
81 82 3.039743 TCCCATTACAACCAGCCGTATA 58.960 45.455 0.00 0.00 0.00 1.47
82 83 3.455177 TCCCATTACAACCAGCCGTATAA 59.545 43.478 0.00 0.00 0.00 0.98
83 84 4.080469 TCCCATTACAACCAGCCGTATAAA 60.080 41.667 0.00 0.00 0.00 1.40
84 85 4.035909 CCCATTACAACCAGCCGTATAAAC 59.964 45.833 0.00 0.00 0.00 2.01
85 86 4.636648 CCATTACAACCAGCCGTATAAACA 59.363 41.667 0.00 0.00 0.00 2.83
86 87 5.298276 CCATTACAACCAGCCGTATAAACAT 59.702 40.000 0.00 0.00 0.00 2.71
87 88 6.483974 CCATTACAACCAGCCGTATAAACATA 59.516 38.462 0.00 0.00 0.00 2.29
88 89 6.907206 TTACAACCAGCCGTATAAACATAC 57.093 37.500 0.00 0.00 0.00 2.39
89 90 3.866910 ACAACCAGCCGTATAAACATACG 59.133 43.478 9.61 9.61 46.64 3.06
100 101 6.651545 GTATAAACATACGAGTACAGTCGC 57.348 41.667 6.38 0.00 44.06 5.19
101 102 3.844577 AAACATACGAGTACAGTCGCT 57.155 42.857 6.38 0.00 44.06 4.93
102 103 4.952262 AAACATACGAGTACAGTCGCTA 57.048 40.909 6.38 0.08 44.06 4.26
103 104 4.533225 AACATACGAGTACAGTCGCTAG 57.467 45.455 6.38 0.00 44.06 3.42
104 105 2.287373 ACATACGAGTACAGTCGCTAGC 59.713 50.000 4.06 4.06 44.06 3.42
105 106 2.014335 TACGAGTACAGTCGCTAGCA 57.986 50.000 16.45 0.00 44.06 3.49
106 107 0.447011 ACGAGTACAGTCGCTAGCAC 59.553 55.000 16.45 11.93 44.06 4.40
107 108 0.727970 CGAGTACAGTCGCTAGCACT 59.272 55.000 16.45 14.02 32.22 4.40
108 109 1.530031 CGAGTACAGTCGCTAGCACTG 60.530 57.143 29.70 29.70 45.86 3.66
109 110 0.811915 AGTACAGTCGCTAGCACTGG 59.188 55.000 32.11 21.70 44.86 4.00
110 111 0.802607 GTACAGTCGCTAGCACTGGC 60.803 60.000 32.11 24.96 44.86 4.85
127 128 2.046507 CGGAGCTTCAGCAAGGCT 60.047 61.111 0.75 0.00 45.16 4.58
158 159 4.757355 CCCGCCCAGCCCATTGAA 62.757 66.667 0.00 0.00 0.00 2.69
159 160 2.442643 CCGCCCAGCCCATTGAAT 60.443 61.111 0.00 0.00 0.00 2.57
160 161 2.059786 CCGCCCAGCCCATTGAATT 61.060 57.895 0.00 0.00 0.00 2.17
161 162 1.616091 CCGCCCAGCCCATTGAATTT 61.616 55.000 0.00 0.00 0.00 1.82
162 163 0.249955 CGCCCAGCCCATTGAATTTT 59.750 50.000 0.00 0.00 0.00 1.82
163 164 1.480137 CGCCCAGCCCATTGAATTTTA 59.520 47.619 0.00 0.00 0.00 1.52
164 165 2.102925 CGCCCAGCCCATTGAATTTTAT 59.897 45.455 0.00 0.00 0.00 1.40
165 166 3.320541 CGCCCAGCCCATTGAATTTTATA 59.679 43.478 0.00 0.00 0.00 0.98
166 167 4.631131 GCCCAGCCCATTGAATTTTATAC 58.369 43.478 0.00 0.00 0.00 1.47
167 168 4.100808 GCCCAGCCCATTGAATTTTATACA 59.899 41.667 0.00 0.00 0.00 2.29
168 169 5.600696 CCCAGCCCATTGAATTTTATACAC 58.399 41.667 0.00 0.00 0.00 2.90
169 170 5.363580 CCCAGCCCATTGAATTTTATACACT 59.636 40.000 0.00 0.00 0.00 3.55
170 171 6.549364 CCCAGCCCATTGAATTTTATACACTA 59.451 38.462 0.00 0.00 0.00 2.74
171 172 7.233348 CCCAGCCCATTGAATTTTATACACTAT 59.767 37.037 0.00 0.00 0.00 2.12
172 173 9.295825 CCAGCCCATTGAATTTTATACACTATA 57.704 33.333 0.00 0.00 0.00 1.31
187 188 7.820578 ATACACTATATATCTAGTTCGGGCC 57.179 40.000 0.00 0.00 29.41 5.80
188 189 5.828871 ACACTATATATCTAGTTCGGGCCT 58.171 41.667 0.84 0.00 29.41 5.19
189 190 5.652891 ACACTATATATCTAGTTCGGGCCTG 59.347 44.000 4.71 4.71 29.41 4.85
190 191 5.886474 CACTATATATCTAGTTCGGGCCTGA 59.114 44.000 11.27 11.27 29.41 3.86
191 192 6.377429 CACTATATATCTAGTTCGGGCCTGAA 59.623 42.308 23.60 23.60 29.41 3.02
192 193 6.952358 ACTATATATCTAGTTCGGGCCTGAAA 59.048 38.462 28.65 13.74 0.00 2.69
193 194 6.681729 ATATATCTAGTTCGGGCCTGAAAA 57.318 37.500 28.65 18.04 0.00 2.29
194 195 2.467566 TCTAGTTCGGGCCTGAAAAC 57.532 50.000 28.65 18.04 0.00 2.43
195 196 1.695242 TCTAGTTCGGGCCTGAAAACA 59.305 47.619 28.65 14.93 0.00 2.83
196 197 2.076863 CTAGTTCGGGCCTGAAAACAG 58.923 52.381 28.65 19.91 0.00 3.16
197 198 0.182775 AGTTCGGGCCTGAAAACAGT 59.817 50.000 28.65 7.06 0.00 3.55
198 199 1.418637 AGTTCGGGCCTGAAAACAGTA 59.581 47.619 28.65 1.55 0.00 2.74
199 200 1.804748 GTTCGGGCCTGAAAACAGTAG 59.195 52.381 28.65 0.00 0.00 2.57
200 201 0.321298 TCGGGCCTGAAAACAGTAGC 60.321 55.000 13.31 0.00 0.00 3.58
201 202 1.305930 CGGGCCTGAAAACAGTAGCC 61.306 60.000 5.28 0.00 39.73 3.93
202 203 2.568003 GGCCTGAAAACAGTAGCCC 58.432 57.895 0.00 0.00 34.23 5.19
203 204 0.251165 GGCCTGAAAACAGTAGCCCA 60.251 55.000 0.00 0.00 34.23 5.36
204 205 1.616994 GGCCTGAAAACAGTAGCCCAT 60.617 52.381 0.00 0.00 34.23 4.00
205 206 2.356741 GGCCTGAAAACAGTAGCCCATA 60.357 50.000 0.00 0.00 34.23 2.74
206 207 2.945668 GCCTGAAAACAGTAGCCCATAG 59.054 50.000 0.00 0.00 0.00 2.23
207 208 3.545703 CCTGAAAACAGTAGCCCATAGG 58.454 50.000 0.00 0.00 0.00 2.57
230 231 2.484558 TTTTTCTATTCGGCCCGCC 58.515 52.632 0.00 0.00 0.00 6.13
231 232 1.033202 TTTTTCTATTCGGCCCGCCC 61.033 55.000 0.00 0.00 0.00 6.13
232 233 2.199613 TTTTCTATTCGGCCCGCCCA 62.200 55.000 0.00 0.00 0.00 5.36
233 234 2.879813 TTTCTATTCGGCCCGCCCAC 62.880 60.000 0.00 0.00 0.00 4.61
234 235 4.929707 CTATTCGGCCCGCCCACC 62.930 72.222 0.00 0.00 0.00 4.61
247 248 3.053828 CCACCTTTGGGCTGCAAG 58.946 61.111 0.50 0.00 39.57 4.01
258 259 3.429141 CTGCAAGCTCCGCCACTG 61.429 66.667 5.69 0.00 0.00 3.66
261 262 2.743928 CAAGCTCCGCCACTGGTC 60.744 66.667 0.00 0.00 0.00 4.02
262 263 4.379243 AAGCTCCGCCACTGGTCG 62.379 66.667 0.00 1.13 0.00 4.79
265 266 3.449227 CTCCGCCACTGGTCGCTA 61.449 66.667 0.00 0.00 0.00 4.26
266 267 3.417275 CTCCGCCACTGGTCGCTAG 62.417 68.421 0.00 0.00 0.00 3.42
269 270 1.226603 CGCCACTGGTCGCTAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
331 334 7.344612 ACATCCTAGGAAACAGATACACATACA 59.655 37.037 17.30 0.00 0.00 2.29
371 375 2.036556 CGTTTCGCTTGCAAACATCT 57.963 45.000 0.00 0.00 33.99 2.90
378 382 2.601979 CGCTTGCAAACATCTGAAACGA 60.602 45.455 0.00 0.00 0.00 3.85
402 408 2.223112 GGCTTAACGTCAGATGCACATG 60.223 50.000 0.00 0.00 0.00 3.21
515 533 3.084646 TCCGCCGGCCAGGATTTA 61.085 61.111 23.46 0.00 45.00 1.40
645 672 7.703058 AAAAATCTCCAGTGTACCAAATAGG 57.297 36.000 0.00 0.00 45.67 2.57
646 673 6.636454 AAATCTCCAGTGTACCAAATAGGA 57.364 37.500 0.00 0.00 41.22 2.94
647 674 5.878406 ATCTCCAGTGTACCAAATAGGAG 57.122 43.478 0.00 0.00 41.88 3.69
674 701 6.093633 ACAAGAAAACTGGAGTAACTGTGTTC 59.906 38.462 0.00 0.00 37.02 3.18
721 748 7.709182 TGGTTGCTCACATATATAGTACACAAC 59.291 37.037 0.00 0.00 33.55 3.32
752 779 0.322456 ATAATGCATGCCGCCCGTAT 60.322 50.000 16.68 0.00 41.33 3.06
754 781 0.536233 AATGCATGCCGCCCGTATAA 60.536 50.000 16.68 0.00 41.33 0.98
770 797 7.096551 GCCCGTATAAATTTGGCAAATATGAT 58.903 34.615 24.58 18.68 41.76 2.45
772 799 9.487790 CCCGTATAAATTTGGCAAATATGATTT 57.512 29.630 24.58 17.38 0.00 2.17
823 859 8.788325 AACTTTTGTTTGTCAGTTACTACTCT 57.212 30.769 0.00 0.00 40.17 3.24
824 860 9.880157 AACTTTTGTTTGTCAGTTACTACTCTA 57.120 29.630 0.00 0.00 40.17 2.43
826 862 9.530633 CTTTTGTTTGTCAGTTACTACTCTACT 57.469 33.333 0.00 0.00 30.26 2.57
843 879 3.818121 CTCGCCCGACCAACACCAA 62.818 63.158 0.00 0.00 0.00 3.67
895 931 2.159085 CGTCCCTGGTTCTATTCACTCC 60.159 54.545 0.00 0.00 0.00 3.85
990 1034 2.592102 TCTAGTGTGGGTACGGTTCT 57.408 50.000 0.00 0.00 0.00 3.01
1213 1262 6.332635 TCATTTATGAGAACCCCCATCTATGT 59.667 38.462 0.00 0.00 32.11 2.29
1432 1490 0.663153 GCCTTCGCGCCAATTTATCT 59.337 50.000 0.00 0.00 0.00 1.98
1486 1545 5.440234 TGATCGCAATCTACCTTCTACTC 57.560 43.478 0.00 0.00 32.75 2.59
1509 1569 6.500041 TCCACTTTTCACTTTATTTTGGTCG 58.500 36.000 0.00 0.00 0.00 4.79
1592 1652 8.752766 ACATTCTTTAAATGAGCTTTCACATG 57.247 30.769 4.86 0.00 0.00 3.21
1693 1771 8.532186 TTATTTTATGGCTCAAAAGGATAGCA 57.468 30.769 0.00 0.00 38.01 3.49
1831 2331 4.826183 ACATATACACGAGTTCCCCTAGTC 59.174 45.833 0.00 0.00 0.00 2.59
1867 2367 8.642935 TTATACCAAATTGTCACATCCTTTGA 57.357 30.769 8.74 0.00 0.00 2.69
1951 2453 4.082845 AGGATATCATCGATGTCGTCCTT 58.917 43.478 27.14 18.02 40.80 3.36
1965 2467 2.158885 TCGTCCTTGTTGATGGTCACAA 60.159 45.455 0.00 0.00 0.00 3.33
1990 2492 2.028130 TCAACATGCGGTTTTGACCTT 58.972 42.857 0.00 0.00 37.72 3.50
1996 2498 2.254350 GGTTTTGACCTTCGCGCC 59.746 61.111 0.00 0.00 0.00 6.53
1999 2501 0.454452 GTTTTGACCTTCGCGCCATC 60.454 55.000 0.00 0.00 0.00 3.51
2027 2529 1.517832 GACCTCCACATCCCAGTCG 59.482 63.158 0.00 0.00 0.00 4.18
2039 2541 4.710375 ACATCCCAGTCGTCTATTGTAAGT 59.290 41.667 0.00 0.00 0.00 2.24
2115 2617 5.580691 CGTCTAGTCATGCAAGTGGAATAAA 59.419 40.000 0.00 0.00 0.00 1.40
2150 2652 1.811266 CATGTCGCTGGAAGACCCG 60.811 63.158 0.00 0.00 37.80 5.28
2261 2763 1.746615 CCTGTGGAGGGTCATTGCG 60.747 63.158 0.00 0.00 35.40 4.85
2300 2802 1.664151 GACGCGAGGAAAGTTAATGGG 59.336 52.381 15.93 0.00 0.00 4.00
2313 2815 2.208132 TAATGGGCACAACGGTCATT 57.792 45.000 0.00 0.00 33.37 2.57
2389 2891 3.262151 TCGTCATTTCCACCAGGTTCATA 59.738 43.478 0.00 0.00 35.89 2.15
2392 2894 4.949856 GTCATTTCCACCAGGTTCATATGT 59.050 41.667 1.90 0.00 35.89 2.29
2401 2903 4.081142 ACCAGGTTCATATGTTGATGACGA 60.081 41.667 1.90 0.00 35.56 4.20
2408 2910 2.568696 ATGTTGATGACGAGGACGAG 57.431 50.000 0.00 0.00 42.66 4.18
2474 2976 5.163733 GGTTCACACCGAAAGTAAGAAACAA 60.164 40.000 0.00 0.00 34.69 2.83
2488 2990 1.476488 GAAACAAACCCATGATCCCCG 59.524 52.381 0.00 0.00 0.00 5.73
2489 2991 0.970427 AACAAACCCATGATCCCCGC 60.970 55.000 0.00 0.00 0.00 6.13
2525 3027 3.990959 AAAACCCACAAACACCACATT 57.009 38.095 0.00 0.00 0.00 2.71
2573 3075 2.245159 TCAAGTGTGCTGTGGAAGAG 57.755 50.000 0.00 0.00 0.00 2.85
2621 3123 6.046762 TCCATTGGAGATAGAGTATCACCCTA 59.953 42.308 0.00 1.78 42.91 3.53
2755 3283 6.039717 ACCAAGATAAACACATGATACATGCC 59.960 38.462 0.00 0.00 0.00 4.40
2825 3354 5.140454 ACAGTAAGGATTGAAAACTTGGCT 58.860 37.500 0.00 0.00 0.00 4.75
3042 3572 7.664318 GGTTCTTCCAAAGTCATTTAGGAGTAA 59.336 37.037 0.00 0.00 35.97 2.24
3066 3596 5.835257 TCATTTGCACTCTTCCTCTTTTTG 58.165 37.500 0.00 0.00 0.00 2.44
3118 3649 8.833493 GGCTTTACTGTTTTGTAGTTTTCTCTA 58.167 33.333 0.00 0.00 0.00 2.43
3166 3700 8.984891 TGTATAAATTGACTTTTTGCATGGAG 57.015 30.769 0.00 0.00 0.00 3.86
3190 4038 8.410030 AGTGTTCTAGCGATATATAGTAGACG 57.590 38.462 0.00 0.00 0.00 4.18
3204 4052 6.720112 ATAGTAGACGTTTGCCAATACCTA 57.280 37.500 0.00 0.00 0.00 3.08
3234 4082 1.066929 CAAGGTGCATACTTTTGGGCC 60.067 52.381 0.00 0.00 0.00 5.80
3295 4143 7.777095 AGAGTACCAGTTCTAGATTTGCTAAG 58.223 38.462 0.00 0.00 0.00 2.18
3301 4149 8.568794 ACCAGTTCTAGATTTGCTAAGAAAAAC 58.431 33.333 0.00 0.00 0.00 2.43
3361 4717 8.755018 GCGAGCTGCAATTTTTAATATTATTGT 58.245 29.630 1.02 0.00 45.45 2.71
3398 4754 9.265938 CATTCTACACATCAAATTAAAGACACG 57.734 33.333 0.00 0.00 0.00 4.49
3507 7384 1.157870 AACACCTCGAACTGTTGCCG 61.158 55.000 0.00 0.00 0.00 5.69
3509 7386 2.342279 CCTCGAACTGTTGCCGGA 59.658 61.111 5.05 0.00 0.00 5.14
3547 7424 0.875908 CACAGGCGACCCATATCGTG 60.876 60.000 0.00 0.00 44.13 4.35
3588 7482 2.092321 AGATATCCTCCGTCGATAGGGG 60.092 54.545 12.09 6.44 33.40 4.79
3591 7485 1.833049 CCTCCGTCGATAGGGGCTT 60.833 63.158 9.57 0.00 0.00 4.35
3605 10067 0.322816 GGGCTTGAACATCTCTGCCA 60.323 55.000 0.00 0.00 42.42 4.92
3618 10080 4.675161 TGCCATGCCCTTCGCCAA 62.675 61.111 0.00 0.00 36.24 4.52
3641 10103 3.781307 CCGATGCCCCTGTTCCGA 61.781 66.667 0.00 0.00 0.00 4.55
3673 10135 1.416401 TCGTCTTCCCAAGAACAAGCT 59.584 47.619 0.00 0.00 39.67 3.74
3710 12705 1.018752 CGACATTGCACCGATGGACA 61.019 55.000 2.13 0.00 30.00 4.02
3835 15439 1.360192 GCCACCTGCGAATTATGCC 59.640 57.895 0.00 0.00 0.00 4.40
3886 15490 0.173708 GTACTGGCTCTCTTGTCCCG 59.826 60.000 0.00 0.00 0.00 5.14
3961 15565 1.474077 GAAGCATCCGAAAATGGTGCT 59.526 47.619 0.00 0.00 43.49 4.40
3991 15601 4.114997 GGGACATTTGTGCCGCCG 62.115 66.667 5.44 0.00 46.37 6.46
4070 15680 0.737219 GGCTGCACCATCAGATGTTC 59.263 55.000 9.64 0.00 38.86 3.18
4117 15727 1.067212 ACGGCTCTGAATACGGATGAC 59.933 52.381 0.00 0.00 0.00 3.06
4124 15734 4.023980 TCTGAATACGGATGACCAGTTCT 58.976 43.478 5.26 0.00 35.59 3.01
4178 15788 1.203038 TGCCCATGGACATCAACAACT 60.203 47.619 15.22 0.00 0.00 3.16
4180 15790 3.290710 GCCCATGGACATCAACAACTAT 58.709 45.455 15.22 0.00 0.00 2.12
4189 15799 5.104900 GGACATCAACAACTATAGGGTCACT 60.105 44.000 4.43 0.00 0.00 3.41
4193 15803 7.344612 ACATCAACAACTATAGGGTCACTGATA 59.655 37.037 4.43 0.00 0.00 2.15
4242 18421 1.146358 GCCGACGTCCAAGACTATGC 61.146 60.000 10.58 0.00 0.00 3.14
4381 18647 6.436532 ACCCGGTTATAGTAGACAGGATAATG 59.563 42.308 0.00 0.00 33.64 1.90
4382 18648 6.662234 CCCGGTTATAGTAGACAGGATAATGA 59.338 42.308 0.00 0.00 33.64 2.57
4449 18717 7.829378 ACAAAGAACTATAAGAGCGTTTAGG 57.171 36.000 0.00 0.00 0.00 2.69
4461 18744 4.179298 GAGCGTTTAGGTCCTTAATTCGT 58.821 43.478 0.00 0.00 41.28 3.85
4584 18871 6.524101 TTGCCCATACTTTACTTGAAATCC 57.476 37.500 0.00 0.00 0.00 3.01
4605 18892 2.559698 TTCCAGCAATTTCCTCGACA 57.440 45.000 0.00 0.00 0.00 4.35
4634 18922 8.779354 ACAAAATATAACTCTTCCTGTGTCTC 57.221 34.615 0.00 0.00 0.00 3.36
4702 19002 2.372074 GCTATGTCGGGGTTGGGGA 61.372 63.158 0.00 0.00 0.00 4.81
4739 19053 2.092838 GCTATAGCTGGCGCGAAATTAG 59.907 50.000 17.75 0.18 42.32 1.73
4847 19191 4.522722 ACTTTTTGTTGTTGAACCGGAA 57.477 36.364 9.46 0.00 0.00 4.30
4848 19192 5.079689 ACTTTTTGTTGTTGAACCGGAAT 57.920 34.783 9.46 0.00 0.00 3.01
4881 19225 7.215789 TGGACAGCATACAAATCACAAAATTT 58.784 30.769 0.00 0.00 0.00 1.82
4909 19253 5.398603 AAACAATTTCACACCTTCACACA 57.601 34.783 0.00 0.00 0.00 3.72
4998 19342 2.336478 CGAGCTCGGTCACCACTCT 61.336 63.158 28.40 0.00 35.37 3.24
5042 19850 3.270877 CCTCCCTCTCCGTATTTGTTTG 58.729 50.000 0.00 0.00 0.00 2.93
5048 19856 4.319477 CCTCTCCGTATTTGTTTGTGTGTG 60.319 45.833 0.00 0.00 0.00 3.82
5057 19865 5.378292 TTTGTTTGTGTGTGTATGTGTGT 57.622 34.783 0.00 0.00 0.00 3.72
5112 21881 8.532977 TTTCAGAACTTTTTGGAACTGAAAAG 57.467 30.769 14.70 6.94 45.05 2.27
5149 21918 8.931385 ATATTTCCAAAATTTCAATCTCCACG 57.069 30.769 0.00 0.00 0.00 4.94
5150 21919 6.398234 TTTCCAAAATTTCAATCTCCACGA 57.602 33.333 0.00 0.00 0.00 4.35
5151 21920 6.398234 TTCCAAAATTTCAATCTCCACGAA 57.602 33.333 0.00 0.00 0.00 3.85
5152 21921 5.768317 TCCAAAATTTCAATCTCCACGAAC 58.232 37.500 0.00 0.00 0.00 3.95
5153 21922 5.534654 TCCAAAATTTCAATCTCCACGAACT 59.465 36.000 0.00 0.00 0.00 3.01
5154 21923 5.858581 CCAAAATTTCAATCTCCACGAACTC 59.141 40.000 0.00 0.00 0.00 3.01
5155 21924 4.928661 AATTTCAATCTCCACGAACTCG 57.071 40.909 0.00 0.00 46.33 4.18
5156 21925 2.363788 TTCAATCTCCACGAACTCGG 57.636 50.000 3.88 0.00 44.95 4.63
5157 21926 1.254026 TCAATCTCCACGAACTCGGT 58.746 50.000 3.88 0.00 44.95 4.69
5160 21929 1.096416 ATCTCCACGAACTCGGTCTC 58.904 55.000 3.88 0.00 44.95 3.36
5162 21931 1.228337 TCCACGAACTCGGTCTCCA 60.228 57.895 3.88 0.00 44.95 3.86
5163 21932 0.824595 TCCACGAACTCGGTCTCCAA 60.825 55.000 3.88 0.00 44.95 3.53
5167 21936 2.157668 CACGAACTCGGTCTCCAAAATG 59.842 50.000 3.88 0.00 44.95 2.32
5168 21937 1.128692 CGAACTCGGTCTCCAAAATGC 59.871 52.381 0.00 0.00 35.37 3.56
5169 21938 1.468914 GAACTCGGTCTCCAAAATGCC 59.531 52.381 0.00 0.00 0.00 4.40
5170 21939 0.322546 ACTCGGTCTCCAAAATGCCC 60.323 55.000 0.00 0.00 0.00 5.36
5171 21940 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
5172 21941 1.209504 CTCGGTCTCCAAAATGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
5173 21942 1.065709 TCGGTCTCCAAAATGCCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
5174 21943 1.065418 CGGTCTCCAAAATGCCCTACT 60.065 52.381 0.00 0.00 0.00 2.57
5175 21944 2.169769 CGGTCTCCAAAATGCCCTACTA 59.830 50.000 0.00 0.00 0.00 1.82
5176 21945 3.181454 CGGTCTCCAAAATGCCCTACTAT 60.181 47.826 0.00 0.00 0.00 2.12
5178 21947 5.454187 CGGTCTCCAAAATGCCCTACTATAA 60.454 44.000 0.00 0.00 0.00 0.98
5179 21948 6.362248 GGTCTCCAAAATGCCCTACTATAAA 58.638 40.000 0.00 0.00 0.00 1.40
5180 21949 6.831868 GGTCTCCAAAATGCCCTACTATAAAA 59.168 38.462 0.00 0.00 0.00 1.52
5181 21950 7.340999 GGTCTCCAAAATGCCCTACTATAAAAA 59.659 37.037 0.00 0.00 0.00 1.94
5204 21973 8.649973 AAAATGTTCTTTTATACGGCACAAAA 57.350 26.923 0.00 0.00 0.00 2.44
5205 21974 8.649973 AAATGTTCTTTTATACGGCACAAAAA 57.350 26.923 0.00 0.00 0.00 1.94
5206 21975 7.631915 ATGTTCTTTTATACGGCACAAAAAC 57.368 32.000 0.00 0.00 0.00 2.43
5207 21976 6.561614 TGTTCTTTTATACGGCACAAAAACA 58.438 32.000 0.00 0.00 0.00 2.83
5208 21977 6.693545 TGTTCTTTTATACGGCACAAAAACAG 59.306 34.615 0.00 0.00 0.00 3.16
5210 21979 6.797454 TCTTTTATACGGCACAAAAACAGTT 58.203 32.000 0.00 0.00 0.00 3.16
5211 21980 6.693545 TCTTTTATACGGCACAAAAACAGTTG 59.306 34.615 0.00 0.00 34.52 3.16
5212 21981 5.502153 TTATACGGCACAAAAACAGTTGT 57.498 34.783 0.00 0.00 42.48 3.32
5216 21985 2.027451 CGGCACAAAAACAGTTGTTTCG 59.973 45.455 10.38 7.82 46.47 3.46
5217 21986 2.990514 GGCACAAAAACAGTTGTTTCGT 59.009 40.909 10.38 8.37 46.47 3.85
5218 21987 3.430556 GGCACAAAAACAGTTGTTTCGTT 59.569 39.130 10.38 0.59 46.47 3.85
5219 21988 4.084276 GGCACAAAAACAGTTGTTTCGTTT 60.084 37.500 10.38 0.00 46.47 3.60
5220 21989 5.070209 GCACAAAAACAGTTGTTTCGTTTC 58.930 37.500 10.38 3.40 46.47 2.78
5222 21991 4.687018 ACAAAAACAGTTGTTTCGTTTCCC 59.313 37.500 10.38 0.00 46.47 3.97
5224 21993 1.018910 ACAGTTGTTTCGTTTCCCGG 58.981 50.000 0.00 0.00 37.11 5.73
5226 21995 1.008194 GTTGTTTCGTTTCCCGGCC 60.008 57.895 0.00 0.00 37.11 6.13
5227 21996 1.152922 TTGTTTCGTTTCCCGGCCT 60.153 52.632 0.00 0.00 37.11 5.19
5228 21997 0.108207 TTGTTTCGTTTCCCGGCCTA 59.892 50.000 0.00 0.00 37.11 3.93
5229 21998 0.325602 TGTTTCGTTTCCCGGCCTAT 59.674 50.000 0.00 0.00 37.11 2.57
5230 21999 1.012086 GTTTCGTTTCCCGGCCTATC 58.988 55.000 0.00 0.00 37.11 2.08
5231 22000 0.614294 TTTCGTTTCCCGGCCTATCA 59.386 50.000 0.00 0.00 37.11 2.15
5232 22001 0.177141 TTCGTTTCCCGGCCTATCAG 59.823 55.000 0.00 0.00 37.11 2.90
5233 22002 0.974010 TCGTTTCCCGGCCTATCAGT 60.974 55.000 0.00 0.00 37.11 3.41
5235 22004 1.677820 CGTTTCCCGGCCTATCAGTTT 60.678 52.381 0.00 0.00 0.00 2.66
5237 22006 2.823747 GTTTCCCGGCCTATCAGTTTTT 59.176 45.455 0.00 0.00 0.00 1.94
5238 22007 2.122783 TCCCGGCCTATCAGTTTTTG 57.877 50.000 0.00 0.00 0.00 2.44
5239 22008 1.102978 CCCGGCCTATCAGTTTTTGG 58.897 55.000 0.00 0.00 0.00 3.28
5240 22009 1.102978 CCGGCCTATCAGTTTTTGGG 58.897 55.000 0.00 0.00 0.00 4.12
5241 22010 0.455815 CGGCCTATCAGTTTTTGGGC 59.544 55.000 0.00 0.00 39.56 5.36
5242 22011 1.852633 GGCCTATCAGTTTTTGGGCT 58.147 50.000 0.00 0.00 39.78 5.19
5243 22012 1.478105 GGCCTATCAGTTTTTGGGCTG 59.522 52.381 0.00 0.00 39.78 4.85
5244 22013 1.478105 GCCTATCAGTTTTTGGGCTGG 59.522 52.381 0.00 0.00 36.96 4.85
5245 22014 2.807676 CCTATCAGTTTTTGGGCTGGT 58.192 47.619 0.00 0.00 33.81 4.00
5246 22015 2.755103 CCTATCAGTTTTTGGGCTGGTC 59.245 50.000 0.00 0.00 33.81 4.02
5248 22017 0.181587 TCAGTTTTTGGGCTGGTCGA 59.818 50.000 0.00 0.00 33.81 4.20
5249 22018 1.202879 TCAGTTTTTGGGCTGGTCGAT 60.203 47.619 0.00 0.00 33.81 3.59
5250 22019 1.068333 CAGTTTTTGGGCTGGTCGATG 60.068 52.381 0.00 0.00 0.00 3.84
5252 22021 0.897863 TTTTTGGGCTGGTCGATGGG 60.898 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.166173 CAACTTTGATGAGGTGACATAGAATTA 57.834 33.333 0.00 0.00 36.43 1.40
1 2 7.667219 ACAACTTTGATGAGGTGACATAGAATT 59.333 33.333 0.00 0.00 36.43 2.17
2 3 7.170965 ACAACTTTGATGAGGTGACATAGAAT 58.829 34.615 0.00 0.00 36.43 2.40
3 4 6.533730 ACAACTTTGATGAGGTGACATAGAA 58.466 36.000 0.00 0.00 36.43 2.10
4 5 6.014242 AGACAACTTTGATGAGGTGACATAGA 60.014 38.462 0.00 0.00 36.43 1.98
5 6 6.169094 AGACAACTTTGATGAGGTGACATAG 58.831 40.000 0.00 0.00 36.43 2.23
6 7 6.114187 AGACAACTTTGATGAGGTGACATA 57.886 37.500 0.00 0.00 36.43 2.29
7 8 4.978099 AGACAACTTTGATGAGGTGACAT 58.022 39.130 0.00 0.00 36.43 3.06
8 9 4.422073 AGACAACTTTGATGAGGTGACA 57.578 40.909 0.00 0.00 36.43 3.58
9 10 5.542779 ACTAGACAACTTTGATGAGGTGAC 58.457 41.667 0.00 0.00 36.43 3.67
10 11 5.808366 ACTAGACAACTTTGATGAGGTGA 57.192 39.130 0.00 0.00 36.43 4.02
11 12 5.180117 CCAACTAGACAACTTTGATGAGGTG 59.820 44.000 0.00 0.00 40.24 4.00
12 13 5.308825 CCAACTAGACAACTTTGATGAGGT 58.691 41.667 0.00 0.00 0.00 3.85
13 14 4.154918 GCCAACTAGACAACTTTGATGAGG 59.845 45.833 0.00 0.00 0.00 3.86
14 15 4.756642 TGCCAACTAGACAACTTTGATGAG 59.243 41.667 0.00 0.00 0.00 2.90
15 16 4.713553 TGCCAACTAGACAACTTTGATGA 58.286 39.130 0.00 0.00 0.00 2.92
16 17 5.396484 CATGCCAACTAGACAACTTTGATG 58.604 41.667 0.00 0.00 0.00 3.07
17 18 4.082571 GCATGCCAACTAGACAACTTTGAT 60.083 41.667 6.36 0.00 0.00 2.57
18 19 3.253188 GCATGCCAACTAGACAACTTTGA 59.747 43.478 6.36 0.00 0.00 2.69
19 20 3.004629 TGCATGCCAACTAGACAACTTTG 59.995 43.478 16.68 0.00 0.00 2.77
20 21 3.221771 TGCATGCCAACTAGACAACTTT 58.778 40.909 16.68 0.00 0.00 2.66
21 22 2.862541 TGCATGCCAACTAGACAACTT 58.137 42.857 16.68 0.00 0.00 2.66
22 23 2.566833 TGCATGCCAACTAGACAACT 57.433 45.000 16.68 0.00 0.00 3.16
23 24 2.749076 TCATGCATGCCAACTAGACAAC 59.251 45.455 22.25 0.00 0.00 3.32
24 25 3.070476 TCATGCATGCCAACTAGACAA 57.930 42.857 22.25 0.00 0.00 3.18
25 26 2.785540 TCATGCATGCCAACTAGACA 57.214 45.000 22.25 0.00 0.00 3.41
26 27 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
27 28 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
28 29 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
29 30 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
30 31 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
31 32 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
32 33 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
33 34 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
34 35 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
35 36 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
36 37 7.866898 GGAGTATCATAGCTAGTATCATGCATG 59.133 40.741 21.07 21.07 36.25 4.06
37 38 7.015098 GGGAGTATCATAGCTAGTATCATGCAT 59.985 40.741 0.00 0.00 36.25 3.96
38 39 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
39 40 6.322456 TGGGAGTATCATAGCTAGTATCATGC 59.678 42.308 0.00 0.00 36.25 4.06
40 41 7.888250 TGGGAGTATCATAGCTAGTATCATG 57.112 40.000 0.00 0.00 36.25 3.07
42 43 9.409918 GTAATGGGAGTATCATAGCTAGTATCA 57.590 37.037 0.00 0.00 36.25 2.15
43 44 9.409918 TGTAATGGGAGTATCATAGCTAGTATC 57.590 37.037 0.00 0.00 36.25 2.24
44 45 9.769677 TTGTAATGGGAGTATCATAGCTAGTAT 57.230 33.333 0.00 0.00 36.25 2.12
45 46 9.021807 GTTGTAATGGGAGTATCATAGCTAGTA 57.978 37.037 0.00 0.00 36.25 1.82
46 47 7.038941 GGTTGTAATGGGAGTATCATAGCTAGT 60.039 40.741 0.00 0.00 36.25 2.57
47 48 7.039011 TGGTTGTAATGGGAGTATCATAGCTAG 60.039 40.741 0.00 0.00 36.25 3.42
48 49 6.785466 TGGTTGTAATGGGAGTATCATAGCTA 59.215 38.462 0.00 0.00 36.25 3.32
49 50 5.606749 TGGTTGTAATGGGAGTATCATAGCT 59.393 40.000 0.00 0.00 36.25 3.32
50 51 5.865085 TGGTTGTAATGGGAGTATCATAGC 58.135 41.667 0.00 0.00 36.25 2.97
51 52 5.934625 GCTGGTTGTAATGGGAGTATCATAG 59.065 44.000 0.00 0.00 36.25 2.23
52 53 5.221843 GGCTGGTTGTAATGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
53 54 4.446311 GGCTGGTTGTAATGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
54 55 3.118038 GGCTGGTTGTAATGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
55 56 3.477530 GGCTGGTTGTAATGGGAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
56 57 2.158813 CGGCTGGTTGTAATGGGAGTAT 60.159 50.000 0.00 0.00 0.00 2.12
57 58 1.208535 CGGCTGGTTGTAATGGGAGTA 59.791 52.381 0.00 0.00 0.00 2.59
58 59 0.035439 CGGCTGGTTGTAATGGGAGT 60.035 55.000 0.00 0.00 0.00 3.85
59 60 0.035439 ACGGCTGGTTGTAATGGGAG 60.035 55.000 0.00 0.00 0.00 4.30
60 61 1.277579 TACGGCTGGTTGTAATGGGA 58.722 50.000 0.00 0.00 0.00 4.37
61 62 2.341846 ATACGGCTGGTTGTAATGGG 57.658 50.000 0.00 0.00 0.00 4.00
62 63 4.636648 TGTTTATACGGCTGGTTGTAATGG 59.363 41.667 0.00 0.00 0.00 3.16
63 64 5.804692 TGTTTATACGGCTGGTTGTAATG 57.195 39.130 0.00 0.00 0.00 1.90
64 65 7.486802 GTATGTTTATACGGCTGGTTGTAAT 57.513 36.000 0.00 0.00 30.68 1.89
65 66 6.907206 GTATGTTTATACGGCTGGTTGTAA 57.093 37.500 0.00 0.00 30.68 2.41
77 78 6.425504 AGCGACTGTACTCGTATGTTTATAC 58.574 40.000 6.41 0.00 35.99 1.47
78 79 6.609237 AGCGACTGTACTCGTATGTTTATA 57.391 37.500 6.41 0.00 35.99 0.98
79 80 5.496133 AGCGACTGTACTCGTATGTTTAT 57.504 39.130 6.41 0.00 35.99 1.40
80 81 4.952262 AGCGACTGTACTCGTATGTTTA 57.048 40.909 6.41 0.00 35.99 2.01
81 82 3.844577 AGCGACTGTACTCGTATGTTT 57.155 42.857 6.41 0.00 35.99 2.83
82 83 3.242673 GCTAGCGACTGTACTCGTATGTT 60.243 47.826 0.00 0.00 35.99 2.71
83 84 2.287373 GCTAGCGACTGTACTCGTATGT 59.713 50.000 0.00 0.00 35.99 2.29
84 85 2.287103 TGCTAGCGACTGTACTCGTATG 59.713 50.000 10.77 0.00 35.99 2.39
85 86 2.287373 GTGCTAGCGACTGTACTCGTAT 59.713 50.000 10.77 0.00 35.99 3.06
86 87 1.662629 GTGCTAGCGACTGTACTCGTA 59.337 52.381 10.77 0.00 35.99 3.43
87 88 0.447011 GTGCTAGCGACTGTACTCGT 59.553 55.000 10.77 0.00 35.99 4.18
88 89 0.727970 AGTGCTAGCGACTGTACTCG 59.272 55.000 15.98 0.41 36.70 4.18
89 90 1.202200 CCAGTGCTAGCGACTGTACTC 60.202 57.143 29.20 8.59 39.43 2.59
90 91 0.811915 CCAGTGCTAGCGACTGTACT 59.188 55.000 29.20 17.57 39.43 2.73
91 92 0.802607 GCCAGTGCTAGCGACTGTAC 60.803 60.000 29.20 22.16 39.43 2.90
92 93 1.511305 GCCAGTGCTAGCGACTGTA 59.489 57.895 29.20 6.37 39.43 2.74
93 94 2.262915 GCCAGTGCTAGCGACTGT 59.737 61.111 29.20 7.23 39.43 3.55
99 100 3.672295 AAGCTCCGCCAGTGCTAGC 62.672 63.158 8.10 8.10 44.42 3.42
100 101 1.520342 GAAGCTCCGCCAGTGCTAG 60.520 63.158 0.00 0.00 44.42 3.42
101 102 2.230994 CTGAAGCTCCGCCAGTGCTA 62.231 60.000 0.00 0.00 44.42 3.49
103 104 3.123620 CTGAAGCTCCGCCAGTGC 61.124 66.667 0.00 0.00 35.13 4.40
104 105 3.123620 GCTGAAGCTCCGCCAGTG 61.124 66.667 0.00 0.00 38.21 3.66
105 106 3.182590 TTGCTGAAGCTCCGCCAGT 62.183 57.895 3.61 0.00 42.66 4.00
106 107 2.359107 TTGCTGAAGCTCCGCCAG 60.359 61.111 3.61 0.00 42.66 4.85
107 108 2.359107 CTTGCTGAAGCTCCGCCA 60.359 61.111 3.61 0.00 42.66 5.69
108 109 3.130160 CCTTGCTGAAGCTCCGCC 61.130 66.667 3.61 0.00 42.66 6.13
109 110 3.808656 GCCTTGCTGAAGCTCCGC 61.809 66.667 3.61 0.00 42.66 5.54
110 111 2.046507 AGCCTTGCTGAAGCTCCG 60.047 61.111 3.61 0.00 42.66 4.63
141 142 4.757355 TTCAATGGGCTGGGCGGG 62.757 66.667 0.00 0.00 0.00 6.13
142 143 1.616091 AAATTCAATGGGCTGGGCGG 61.616 55.000 0.00 0.00 0.00 6.13
143 144 0.249955 AAAATTCAATGGGCTGGGCG 59.750 50.000 0.00 0.00 0.00 6.13
144 145 3.843893 ATAAAATTCAATGGGCTGGGC 57.156 42.857 0.00 0.00 0.00 5.36
145 146 5.363580 AGTGTATAAAATTCAATGGGCTGGG 59.636 40.000 0.00 0.00 0.00 4.45
146 147 6.469782 AGTGTATAAAATTCAATGGGCTGG 57.530 37.500 0.00 0.00 0.00 4.85
161 162 9.347240 GGCCCGAACTAGATATATAGTGTATAA 57.653 37.037 10.69 0.00 36.14 0.98
162 163 8.721479 AGGCCCGAACTAGATATATAGTGTATA 58.279 37.037 10.69 0.00 36.14 1.47
163 164 7.502895 CAGGCCCGAACTAGATATATAGTGTAT 59.497 40.741 10.69 0.00 36.14 2.29
164 165 6.827251 CAGGCCCGAACTAGATATATAGTGTA 59.173 42.308 10.69 0.00 36.14 2.90
165 166 5.652891 CAGGCCCGAACTAGATATATAGTGT 59.347 44.000 10.69 2.07 36.14 3.55
166 167 5.886474 TCAGGCCCGAACTAGATATATAGTG 59.114 44.000 10.69 0.00 36.14 2.74
167 168 6.075949 TCAGGCCCGAACTAGATATATAGT 57.924 41.667 4.14 4.14 37.61 2.12
168 169 7.406031 TTTCAGGCCCGAACTAGATATATAG 57.594 40.000 0.00 2.77 0.00 1.31
169 170 7.233962 TGTTTTCAGGCCCGAACTAGATATATA 59.766 37.037 0.00 0.00 0.00 0.86
170 171 6.042781 TGTTTTCAGGCCCGAACTAGATATAT 59.957 38.462 0.00 0.00 0.00 0.86
171 172 5.364446 TGTTTTCAGGCCCGAACTAGATATA 59.636 40.000 0.00 0.00 0.00 0.86
172 173 4.163458 TGTTTTCAGGCCCGAACTAGATAT 59.837 41.667 0.00 0.00 0.00 1.63
173 174 3.516300 TGTTTTCAGGCCCGAACTAGATA 59.484 43.478 0.00 0.00 0.00 1.98
174 175 2.304761 TGTTTTCAGGCCCGAACTAGAT 59.695 45.455 0.00 0.00 0.00 1.98
175 176 1.695242 TGTTTTCAGGCCCGAACTAGA 59.305 47.619 0.00 0.00 0.00 2.43
176 177 2.076863 CTGTTTTCAGGCCCGAACTAG 58.923 52.381 0.00 0.00 43.61 2.57
177 178 2.178912 CTGTTTTCAGGCCCGAACTA 57.821 50.000 0.00 0.00 43.61 2.24
178 179 3.021451 CTGTTTTCAGGCCCGAACT 57.979 52.632 0.00 0.00 43.61 3.01
212 213 1.033202 GGGCGGGCCGAATAGAAAAA 61.033 55.000 33.44 0.00 36.85 1.94
213 214 1.452470 GGGCGGGCCGAATAGAAAA 60.452 57.895 33.44 0.00 36.85 2.29
214 215 2.191109 GGGCGGGCCGAATAGAAA 59.809 61.111 33.44 0.00 36.85 2.52
215 216 3.084646 TGGGCGGGCCGAATAGAA 61.085 61.111 33.44 4.97 36.85 2.10
216 217 3.857038 GTGGGCGGGCCGAATAGA 61.857 66.667 33.44 4.60 36.85 1.98
217 218 4.929707 GGTGGGCGGGCCGAATAG 62.930 72.222 33.44 0.00 36.85 1.73
230 231 3.053828 CTTGCAGCCCAAAGGTGG 58.946 61.111 0.00 0.00 44.46 4.61
231 232 2.151049 GAGCTTGCAGCCCAAAGGTG 62.151 60.000 0.65 0.00 43.77 4.00
232 233 1.905354 GAGCTTGCAGCCCAAAGGT 60.905 57.895 4.77 0.00 43.77 3.50
233 234 2.643232 GGAGCTTGCAGCCCAAAGG 61.643 63.158 4.77 0.00 43.77 3.11
234 235 2.968206 GGAGCTTGCAGCCCAAAG 59.032 61.111 4.77 0.00 43.77 2.77
235 236 2.985282 CGGAGCTTGCAGCCCAAA 60.985 61.111 4.77 0.00 43.77 3.28
248 249 3.417275 CTAGCGACCAGTGGCGGAG 62.417 68.421 21.93 8.34 39.38 4.63
249 250 2.825075 TACTAGCGACCAGTGGCGGA 62.825 60.000 21.93 0.02 39.38 5.54
250 251 2.412323 TACTAGCGACCAGTGGCGG 61.412 63.158 21.93 11.02 39.38 6.13
251 252 1.226603 GTACTAGCGACCAGTGGCG 60.227 63.158 9.78 14.99 39.38 5.69
252 253 1.065251 GTAGTACTAGCGACCAGTGGC 59.935 57.143 9.78 0.82 34.35 5.01
253 254 2.362736 TGTAGTACTAGCGACCAGTGG 58.637 52.381 7.91 7.91 0.00 4.00
254 255 4.430137 TTTGTAGTACTAGCGACCAGTG 57.570 45.455 1.87 0.00 0.00 3.66
255 256 4.522022 ACTTTTGTAGTACTAGCGACCAGT 59.478 41.667 1.87 0.00 34.56 4.00
256 257 5.056894 ACTTTTGTAGTACTAGCGACCAG 57.943 43.478 1.87 0.00 34.56 4.00
257 258 5.224888 CAACTTTTGTAGTACTAGCGACCA 58.775 41.667 1.87 0.00 35.54 4.02
258 259 4.624452 CCAACTTTTGTAGTACTAGCGACC 59.376 45.833 1.87 0.00 35.54 4.79
259 260 5.464168 TCCAACTTTTGTAGTACTAGCGAC 58.536 41.667 1.87 0.00 35.54 5.19
260 261 5.710513 TCCAACTTTTGTAGTACTAGCGA 57.289 39.130 1.87 0.00 35.54 4.93
261 262 5.119743 GGTTCCAACTTTTGTAGTACTAGCG 59.880 44.000 1.87 0.00 35.54 4.26
262 263 6.228995 AGGTTCCAACTTTTGTAGTACTAGC 58.771 40.000 1.87 0.00 35.54 3.42
263 264 7.929785 TCAAGGTTCCAACTTTTGTAGTACTAG 59.070 37.037 1.87 0.00 35.54 2.57
264 265 7.794041 TCAAGGTTCCAACTTTTGTAGTACTA 58.206 34.615 0.00 0.00 35.54 1.82
265 266 6.655930 TCAAGGTTCCAACTTTTGTAGTACT 58.344 36.000 0.00 0.00 35.54 2.73
266 267 6.512903 GCTCAAGGTTCCAACTTTTGTAGTAC 60.513 42.308 0.00 0.00 35.54 2.73
269 270 4.338118 TGCTCAAGGTTCCAACTTTTGTAG 59.662 41.667 0.00 0.00 0.00 2.74
331 334 3.986572 CGCTCAGCTCTTCGATGATAAAT 59.013 43.478 0.95 0.00 37.42 1.40
371 375 3.196463 TGACGTTAAGCCTTTCGTTTCA 58.804 40.909 8.32 2.13 36.67 2.69
378 382 2.484264 GTGCATCTGACGTTAAGCCTTT 59.516 45.455 0.00 0.00 0.00 3.11
408 419 1.265365 GGTTGCAACTGAGTGAAGCTC 59.735 52.381 27.64 4.03 44.36 4.09
515 533 3.231734 TGCTAACGCATGCTGTTCT 57.768 47.368 24.21 10.35 42.25 3.01
644 671 6.424207 CAGTTACTCCAGTTTTCTTGTACTCC 59.576 42.308 0.00 0.00 0.00 3.85
645 672 6.985059 ACAGTTACTCCAGTTTTCTTGTACTC 59.015 38.462 0.00 0.00 0.00 2.59
646 673 6.761714 CACAGTTACTCCAGTTTTCTTGTACT 59.238 38.462 0.00 0.00 0.00 2.73
647 674 6.537660 ACACAGTTACTCCAGTTTTCTTGTAC 59.462 38.462 0.00 0.00 0.00 2.90
674 701 4.122046 CAAGAAAAAGGCTCACAAAAGGG 58.878 43.478 0.00 0.00 0.00 3.95
721 748 6.306356 GCGGCATGCATTATTAATAACTTCAG 59.694 38.462 21.36 2.97 45.45 3.02
793 829 6.910433 AGTAACTGACAAACAAAAGTTATGCG 59.090 34.615 0.00 0.00 37.43 4.73
823 859 2.652530 GTGTTGGTCGGGCGAGTA 59.347 61.111 0.00 0.00 0.00 2.59
824 860 4.309950 GGTGTTGGTCGGGCGAGT 62.310 66.667 0.00 0.00 0.00 4.18
826 862 3.862991 TTGGTGTTGGTCGGGCGA 61.863 61.111 0.00 0.00 0.00 5.54
843 879 3.118738 CGAGTATTTGTAGGGCAAGAGGT 60.119 47.826 0.00 0.00 38.47 3.85
895 931 9.820229 TTTCACTTAATTAGTCGCTATGTTTTG 57.180 29.630 0.00 0.00 33.85 2.44
990 1034 0.251297 CCTCCTCCATTGTGCCACAA 60.251 55.000 13.44 13.44 42.95 3.33
1213 1262 1.213430 ACGGTCCTTTCCAACCAAGAA 59.787 47.619 0.00 0.00 35.13 2.52
1486 1545 5.174943 GCGACCAAAATAAAGTGAAAAGTGG 59.825 40.000 0.00 0.00 0.00 4.00
1693 1771 5.871396 ACCGTAGTTCCATGTATCTTCAT 57.129 39.130 0.00 0.00 0.00 2.57
1861 2361 5.180117 GCATGTAGCCACTGTATATCAAAGG 59.820 44.000 0.00 0.00 37.23 3.11
1867 2367 5.163311 TGTCTTGCATGTAGCCACTGTATAT 60.163 40.000 0.00 0.00 44.83 0.86
1951 2453 2.161855 GATGCCTTGTGACCATCAACA 58.838 47.619 0.00 0.00 36.32 3.33
2039 2541 8.547481 TGTCTATGATTGGAGTAAGTTATGGA 57.453 34.615 0.00 0.00 0.00 3.41
2056 2558 7.381789 AGGTACTGACTAGATCTGTCTATGA 57.618 40.000 19.39 5.46 39.89 2.15
2150 2652 3.400599 ATCCCCGGCGGTGTGAATC 62.401 63.158 26.32 0.00 0.00 2.52
2261 2763 1.483415 TCCCAAGCCAATCTACGGTAC 59.517 52.381 0.00 0.00 0.00 3.34
2300 2802 1.130955 CTTTGCAATGACCGTTGTGC 58.869 50.000 6.48 0.00 37.51 4.57
2389 2891 1.135139 CCTCGTCCTCGTCATCAACAT 59.865 52.381 0.00 0.00 38.33 2.71
2392 2894 0.809385 GTCCTCGTCCTCGTCATCAA 59.191 55.000 0.00 0.00 38.33 2.57
2401 2903 4.141287 CTCTATCTCATTGTCCTCGTCCT 58.859 47.826 0.00 0.00 0.00 3.85
2464 2966 4.159693 GGGGATCATGGGTTTGTTTCTTAC 59.840 45.833 0.00 0.00 0.00 2.34
2474 2976 4.189580 CCGCGGGGATCATGGGTT 62.190 66.667 20.10 0.00 34.06 4.11
2488 2990 3.001414 GTTTTAGAGGAACCTTCTCCGC 58.999 50.000 0.00 0.00 40.75 5.54
2489 2991 3.597255 GGTTTTAGAGGAACCTTCTCCG 58.403 50.000 0.00 0.00 42.58 4.63
2573 3075 0.874607 GACACGTACCGATGCCCATC 60.875 60.000 0.00 0.00 34.56 3.51
2658 3160 8.862091 ACCCCACCATTTTATAAATATCCAAA 57.138 30.769 0.00 0.00 0.00 3.28
2671 3189 6.100424 TCTGTCAAAATTTACCCCACCATTTT 59.900 34.615 0.00 0.00 30.56 1.82
2797 3326 8.817100 CCAAGTTTTCAATCCTTACTGTTTTTC 58.183 33.333 0.00 0.00 0.00 2.29
2803 3332 5.712152 AGCCAAGTTTTCAATCCTTACTG 57.288 39.130 0.00 0.00 0.00 2.74
3042 3572 6.453092 CAAAAAGAGGAAGAGTGCAAATGAT 58.547 36.000 0.00 0.00 0.00 2.45
3142 3674 8.863049 CACTCCATGCAAAAAGTCAATTTATAC 58.137 33.333 0.00 0.00 0.00 1.47
3147 3681 5.280654 ACACTCCATGCAAAAAGTCAATT 57.719 34.783 0.00 0.00 0.00 2.32
3166 3700 8.183830 ACGTCTACTATATATCGCTAGAACAC 57.816 38.462 0.00 0.00 0.00 3.32
3190 4038 7.382898 TGGATTTTCTTTAGGTATTGGCAAAC 58.617 34.615 3.01 4.03 0.00 2.93
3204 4052 6.670695 AAGTATGCACCTTGGATTTTCTTT 57.329 33.333 0.00 0.00 29.08 2.52
3234 4082 9.195411 ACATTAATGTTACAGAAAATGCAGTTG 57.805 29.630 15.47 0.00 37.90 3.16
3295 4143 9.717892 CTTAGGTTCTAGAACTGTTTGTTTTTC 57.282 33.333 29.66 12.33 40.94 2.29
3304 4152 7.785506 AGCATATACCTTAGGTTCTAGAACTGT 59.214 37.037 29.66 21.01 40.94 3.55
3361 4717 8.628630 TTGATGTGTAGAATGGTGTTATGAAA 57.371 30.769 0.00 0.00 0.00 2.69
3500 7377 3.241530 ACCTGAGCTCCGGCAACA 61.242 61.111 22.85 0.00 41.70 3.33
3507 7384 4.459089 GGCGGTCACCTGAGCTCC 62.459 72.222 12.15 0.65 39.74 4.70
3547 7424 4.133796 GGCTGATGGGCGGTTTGC 62.134 66.667 0.00 0.00 45.38 3.68
3588 7482 1.202268 GCATGGCAGAGATGTTCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
3591 7485 0.394762 GGGCATGGCAGAGATGTTCA 60.395 55.000 22.06 0.00 0.00 3.18
3617 10079 2.686106 AGGGGCATCGGTACCGTT 60.686 61.111 32.16 22.60 40.74 4.44
3618 10080 3.467226 CAGGGGCATCGGTACCGT 61.467 66.667 32.16 17.76 40.74 4.83
3641 10103 1.407437 GGAAGACGAAGGCCATGATGT 60.407 52.381 5.01 0.00 0.00 3.06
3689 12684 2.404789 CATCGGTGCAATGTCGCC 59.595 61.111 0.00 0.00 0.00 5.54
3710 12705 2.052104 GCGGCCCCTTTGTTAGCAT 61.052 57.895 0.00 0.00 0.00 3.79
3772 12767 1.102978 CTTGGTAGGAAAATGGCCCG 58.897 55.000 0.00 0.00 0.00 6.13
3835 15439 1.759293 CTGCAGTGACATGATCGCCG 61.759 60.000 5.25 0.00 38.75 6.46
3886 15490 6.992063 TCTATTTCTGCATCAAAAGACTCC 57.008 37.500 0.00 0.00 0.00 3.85
3973 15583 4.114997 GGCGGCACAAATGTCCCG 62.115 66.667 11.50 11.50 43.38 5.14
3974 15584 4.114997 CGGCGGCACAAATGTCCC 62.115 66.667 10.53 0.00 0.00 4.46
3975 15585 4.114997 CCGGCGGCACAAATGTCC 62.115 66.667 15.42 0.00 0.00 4.02
3976 15586 2.322999 GATCCGGCGGCACAAATGTC 62.323 60.000 23.83 4.98 0.00 3.06
3977 15587 2.361104 ATCCGGCGGCACAAATGT 60.361 55.556 23.83 0.00 0.00 2.71
3978 15588 2.327002 CTGATCCGGCGGCACAAATG 62.327 60.000 23.83 8.14 0.00 2.32
4117 15727 4.214332 GCTTCTAGTGGAAACAAGAACTGG 59.786 45.833 0.00 0.00 46.06 4.00
4124 15734 3.807622 CGAAGTGCTTCTAGTGGAAACAA 59.192 43.478 9.84 0.00 38.76 2.83
4178 15788 5.655394 AGCTCCATTATCAGTGACCCTATA 58.345 41.667 0.00 0.00 0.00 1.31
4180 15790 3.928754 AGCTCCATTATCAGTGACCCTA 58.071 45.455 0.00 0.00 0.00 3.53
4189 15799 4.287845 AGCCATGTGATAGCTCCATTATCA 59.712 41.667 0.00 0.00 35.69 2.15
4193 15803 2.440627 TCAGCCATGTGATAGCTCCATT 59.559 45.455 0.00 0.00 33.70 3.16
4242 18421 6.702282 GGAAGATATGGTCGTCTAGAAAAAGG 59.298 42.308 0.00 0.00 35.88 3.11
4284 18549 3.334691 TGCACCAAACTATTCTTCCTCG 58.665 45.455 0.00 0.00 0.00 4.63
4423 18691 9.021863 CCTAAACGCTCTTATAGTTCTTTGTAG 57.978 37.037 0.00 0.00 0.00 2.74
4425 18693 7.384477 ACCTAAACGCTCTTATAGTTCTTTGT 58.616 34.615 0.00 0.00 0.00 2.83
4426 18694 7.010275 GGACCTAAACGCTCTTATAGTTCTTTG 59.990 40.741 0.00 0.00 0.00 2.77
4433 18701 9.194271 GAATTAAGGACCTAAACGCTCTTATAG 57.806 37.037 0.00 0.00 0.00 1.31
4440 18708 4.198028 ACGAATTAAGGACCTAAACGCT 57.802 40.909 0.00 0.00 0.00 5.07
4458 18726 9.947433 TCCCTGTTTAAAGAAATATAAGAACGA 57.053 29.630 0.00 0.00 0.00 3.85
4584 18871 2.749076 TGTCGAGGAAATTGCTGGAATG 59.251 45.455 0.34 0.00 0.00 2.67
4634 18922 5.010516 TGTGGGAAATAAGTTGTGACCATTG 59.989 40.000 0.00 0.00 0.00 2.82
4761 19077 9.845740 TTTGCTCATACCTATTATACATGTGTT 57.154 29.630 9.11 0.00 0.00 3.32
4890 19234 4.898829 TCTGTGTGAAGGTGTGAAATTG 57.101 40.909 0.00 0.00 0.00 2.32
4893 19237 3.438781 GTGTTCTGTGTGAAGGTGTGAAA 59.561 43.478 0.00 0.00 35.01 2.69
4898 19242 2.945008 ACATGTGTTCTGTGTGAAGGTG 59.055 45.455 0.00 0.00 35.01 4.00
4905 19249 5.189928 TGGAAACTTACATGTGTTCTGTGT 58.810 37.500 9.11 0.00 0.00 3.72
4909 19253 5.385198 ACCATGGAAACTTACATGTGTTCT 58.615 37.500 21.47 0.00 45.97 3.01
5004 19348 2.688477 GAGGGAGAGAGAATGGACCAT 58.312 52.381 0.00 0.00 0.00 3.55
5042 19850 4.725556 ATTCGAACACACATACACACAC 57.274 40.909 0.00 0.00 0.00 3.82
5123 21892 9.023967 CGTGGAGATTGAAATTTTGGAAATATC 57.976 33.333 0.00 0.00 0.00 1.63
5124 21893 8.748412 TCGTGGAGATTGAAATTTTGGAAATAT 58.252 29.630 0.00 0.00 0.00 1.28
5127 21896 6.398234 TCGTGGAGATTGAAATTTTGGAAA 57.602 33.333 0.00 0.00 0.00 3.13
5128 21897 6.040391 AGTTCGTGGAGATTGAAATTTTGGAA 59.960 34.615 0.00 0.00 0.00 3.53
5129 21898 5.534654 AGTTCGTGGAGATTGAAATTTTGGA 59.465 36.000 0.00 0.00 0.00 3.53
5130 21899 5.772521 AGTTCGTGGAGATTGAAATTTTGG 58.227 37.500 0.00 0.00 0.00 3.28
5132 21901 5.334879 CCGAGTTCGTGGAGATTGAAATTTT 60.335 40.000 0.48 0.00 37.74 1.82
5135 21904 3.262420 CCGAGTTCGTGGAGATTGAAAT 58.738 45.455 0.48 0.00 37.74 2.17
5136 21905 2.036733 ACCGAGTTCGTGGAGATTGAAA 59.963 45.455 0.48 0.00 37.74 2.69
5138 21907 1.201647 GACCGAGTTCGTGGAGATTGA 59.798 52.381 0.48 0.00 37.74 2.57
5139 21908 1.202582 AGACCGAGTTCGTGGAGATTG 59.797 52.381 0.48 0.00 37.74 2.67
5144 21913 0.824595 TTGGAGACCGAGTTCGTGGA 60.825 55.000 0.48 0.00 37.74 4.02
5149 21918 1.468914 GGCATTTTGGAGACCGAGTTC 59.531 52.381 0.00 0.00 0.00 3.01
5150 21919 1.534729 GGCATTTTGGAGACCGAGTT 58.465 50.000 0.00 0.00 0.00 3.01
5151 21920 0.322546 GGGCATTTTGGAGACCGAGT 60.323 55.000 0.00 0.00 0.00 4.18
5152 21921 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.00 0.00 4.63
5153 21922 1.065709 GTAGGGCATTTTGGAGACCGA 60.066 52.381 0.00 0.00 0.00 4.69
5154 21923 1.065418 AGTAGGGCATTTTGGAGACCG 60.065 52.381 0.00 0.00 0.00 4.79
5155 21924 2.808906 AGTAGGGCATTTTGGAGACC 57.191 50.000 0.00 0.00 0.00 3.85
5156 21925 7.875327 TTTTATAGTAGGGCATTTTGGAGAC 57.125 36.000 0.00 0.00 0.00 3.36
5178 21947 8.649973 TTTGTGCCGTATAAAAGAACATTTTT 57.350 26.923 0.00 0.00 34.78 1.94
5179 21948 8.649973 TTTTGTGCCGTATAAAAGAACATTTT 57.350 26.923 0.00 0.00 0.00 1.82
5180 21949 8.544597 GTTTTTGTGCCGTATAAAAGAACATTT 58.455 29.630 0.00 0.00 32.13 2.32
5181 21950 7.707035 TGTTTTTGTGCCGTATAAAAGAACATT 59.293 29.630 0.00 0.00 32.13 2.71
5182 21951 7.203910 TGTTTTTGTGCCGTATAAAAGAACAT 58.796 30.769 0.00 0.00 32.13 2.71
5183 21952 6.561614 TGTTTTTGTGCCGTATAAAAGAACA 58.438 32.000 0.00 0.00 32.13 3.18
5184 21953 6.693978 ACTGTTTTTGTGCCGTATAAAAGAAC 59.306 34.615 0.00 0.00 32.13 3.01
5186 21955 6.380095 ACTGTTTTTGTGCCGTATAAAAGA 57.620 33.333 0.00 0.00 32.13 2.52
5187 21956 6.474102 ACAACTGTTTTTGTGCCGTATAAAAG 59.526 34.615 0.00 0.00 38.31 2.27
5188 21957 6.331061 ACAACTGTTTTTGTGCCGTATAAAA 58.669 32.000 0.00 0.00 38.31 1.52
5189 21958 5.892568 ACAACTGTTTTTGTGCCGTATAAA 58.107 33.333 0.00 0.00 38.31 1.40
5190 21959 5.502153 ACAACTGTTTTTGTGCCGTATAA 57.498 34.783 0.00 0.00 38.31 0.98
5192 21961 4.379339 AACAACTGTTTTTGTGCCGTAT 57.621 36.364 0.00 0.00 39.70 3.06
5193 21962 3.851976 AACAACTGTTTTTGTGCCGTA 57.148 38.095 0.00 0.00 39.70 4.02
5194 21963 2.734276 AACAACTGTTTTTGTGCCGT 57.266 40.000 0.00 0.00 39.70 5.68
5216 21985 2.124277 AAACTGATAGGCCGGGAAAC 57.876 50.000 2.18 0.00 0.00 2.78
5217 21986 2.823154 CAAAAACTGATAGGCCGGGAAA 59.177 45.455 2.18 0.00 0.00 3.13
5218 21987 2.442413 CAAAAACTGATAGGCCGGGAA 58.558 47.619 2.18 0.00 0.00 3.97
5219 21988 1.340600 CCAAAAACTGATAGGCCGGGA 60.341 52.381 2.18 0.00 0.00 5.14
5220 21989 1.102978 CCAAAAACTGATAGGCCGGG 58.897 55.000 2.18 0.00 0.00 5.73
5222 21991 0.455815 GCCCAAAAACTGATAGGCCG 59.544 55.000 0.00 0.00 34.23 6.13
5224 21993 1.478105 CCAGCCCAAAAACTGATAGGC 59.522 52.381 0.00 0.00 40.79 3.93
5226 21995 2.420022 CGACCAGCCCAAAAACTGATAG 59.580 50.000 0.00 0.00 35.90 2.08
5227 21996 2.039216 TCGACCAGCCCAAAAACTGATA 59.961 45.455 0.00 0.00 35.90 2.15
5228 21997 1.202879 TCGACCAGCCCAAAAACTGAT 60.203 47.619 0.00 0.00 35.90 2.90
5229 21998 0.181587 TCGACCAGCCCAAAAACTGA 59.818 50.000 0.00 0.00 35.90 3.41
5230 21999 1.068333 CATCGACCAGCCCAAAAACTG 60.068 52.381 0.00 0.00 0.00 3.16
5231 22000 1.247567 CATCGACCAGCCCAAAAACT 58.752 50.000 0.00 0.00 0.00 2.66
5232 22001 0.243636 CCATCGACCAGCCCAAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
5233 22002 0.897863 CCCATCGACCAGCCCAAAAA 60.898 55.000 0.00 0.00 0.00 1.94
5235 22004 2.354729 CCCATCGACCAGCCCAAA 59.645 61.111 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.