AutoCloner

Multiple sequence alignment - TraesCS6B01G393900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G393900	chr6B	100.000	3510	0	0	1	3510	668903520	668907029	0.000000e+00	6482.0
1	TraesCS6B01G393900	chr6B	88.766	1629	133	29	1186	2799	580278923	580280516	0.000000e+00	1949.0
2	TraesCS6B01G393900	chr6B	79.758	331	45	16	2794	3108	580291095	580291419	1.640000e-53	220.0
3	TraesCS6B01G393900	chr6D	95.768	2599	80	15	925	3510	444454253	444456834	0.000000e+00	4163.0
4	TraesCS6B01G393900	chr6A	93.518	2530	108	28	994	3510	591798320	591800806	0.000000e+00	3712.0
5	TraesCS6B01G393900	chr6A	92.282	596	37	8	9	599	183296052	183295461	0.000000e+00	837.0
6	TraesCS6B01G393900	chr7B	93.651	945	34	10	1	922	725762133	725763074	0.000000e+00	1389.0
7	TraesCS6B01G393900	chr4B	92.874	856	54	7	6	857	186611177	186610325	0.000000e+00	1236.0
8	TraesCS6B01G393900	chr4B	97.826	46	1	0	873	918	186610284	186610239	2.900000e-11	80.5
9	TraesCS6B01G393900	chr2D	91.142	858	67	7	6	857	469211483	469212337	0.000000e+00	1155.0
10	TraesCS6B01G393900	chr2D	91.457	398	29	5	9	402	469211054	469211450	3.080000e-150	542.0
11	TraesCS6B01G393900	chr7D	91.995	787	55	7	9	792	501528220	501529001	0.000000e+00	1098.0
12	TraesCS6B01G393900	chr7D	91.599	369	26	5	27	392	495873661	495874027	4.040000e-139	505.0
13	TraesCS6B01G393900	chr7D	100.000	46	0	0	873	918	501529126	501529171	6.240000e-13	86.1
14	TraesCS6B01G393900	chr2B	88.080	797	77	15	11	797	162939182	162938394	0.000000e+00	929.0
15	TraesCS6B01G393900	chr3D	92.203	590	43	3	270	857	556956969	556956381	0.000000e+00	832.0
16	TraesCS6B01G393900	chr3D	90.674	386	30	6	9	391	556957337	556956955	3.130000e-140	508.0
17	TraesCS6B01G393900	chr4D	92.034	590	43	4	270	857	434098734	434098147	0.000000e+00	826.0
18	TraesCS6B01G393900	chr4D	100.000	42	0	0	873	914	434098109	434098068	1.040000e-10	78.7
19	TraesCS6B01G393900	chr3A	90.550	582	46	8	279	857	659991137	659990562	0.000000e+00	761.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G393900	chr6B	668903520	668907029	3509	False	6482.00	6482	100.0000	1	3510	1	chr6B.!!$F3	3509
1	TraesCS6B01G393900	chr6B	580278923	580280516	1593	False	1949.00	1949	88.7660	1186	2799	1	chr6B.!!$F1	1613
2	TraesCS6B01G393900	chr6D	444454253	444456834	2581	False	4163.00	4163	95.7680	925	3510	1	chr6D.!!$F1	2585
3	TraesCS6B01G393900	chr6A	591798320	591800806	2486	False	3712.00	3712	93.5180	994	3510	1	chr6A.!!$F1	2516
4	TraesCS6B01G393900	chr6A	183295461	183296052	591	True	837.00	837	92.2820	9	599	1	chr6A.!!$R1	590
5	TraesCS6B01G393900	chr7B	725762133	725763074	941	False	1389.00	1389	93.6510	1	922	1	chr7B.!!$F1	921
6	TraesCS6B01G393900	chr4B	186610239	186611177	938	True	658.25	1236	95.3500	6	918	2	chr4B.!!$R1	912
7	TraesCS6B01G393900	chr2D	469211054	469212337	1283	False	848.50	1155	91.2995	6	857	2	chr2D.!!$F1	851
8	TraesCS6B01G393900	chr7D	501528220	501529171	951	False	592.05	1098	95.9975	9	918	2	chr7D.!!$F2	909
9	TraesCS6B01G393900	chr2B	162938394	162939182	788	True	929.00	929	88.0800	11	797	1	chr2B.!!$R1	786
10	TraesCS6B01G393900	chr3D	556956381	556957337	956	True	670.00	832	91.4385	9	857	2	chr3D.!!$R1	848
11	TraesCS6B01G393900	chr4D	434098068	434098734	666	True	452.35	826	96.0170	270	914	2	chr4D.!!$R1	644
12	TraesCS6B01G393900	chr3A	659990562	659991137	575	True	761.00	761	90.5500	279	857	1	chr3A.!!$R1	578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
985	1594	0.252197	ATACCAAGTCCACTTCCCGC	59.748	55.0	0.0	0.0	33.11	6.13	F
1903	2517	0.586319	TTTGAAGCCGAAGAAGTGCG	59.414	50.0	0.0	0.0	0.00	5.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2085	2709	1.13434	GGATACACGGTTGCCCACATA	60.134	52.381	0.00	0.00	0.0	2.29	R
3253	3913	1.10051	CCTGATTGTGCACTCCATGG	58.899	55.000	19.41	4.97	0.0	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	79	3.342477	GCAAGCCTTCCCCCTCCT	61.342	66.667	0.00	0.00	0.00	3.69
107	120	0.413434	TCCTCCACACCTCCATCTCA	59.587	55.000	0.00	0.00	0.00	3.27
349	903	1.144057	GACGGAAGCCATGGACGAT	59.856	57.895	18.40	4.87	0.00	3.73
368	922	1.100463	TGCCGAAAAGCTGCAACTGA	61.100	50.000	1.02	0.00	33.58	3.41
541	1099	1.775039	CGACGGCGGCAATGATGATT	61.775	55.000	15.54	0.00	0.00	2.57
649	1209	2.142292	GATGCTGGTGTGGGGTTCCT	62.142	60.000	0.00	0.00	0.00	3.36
705	1265	4.767255	GGAGGAGCGGTGCTGTGG	62.767	72.222	15.12	0.00	39.88	4.17
766	1349	2.182791	CCGAGCTGCACGAGATGT	59.817	61.111	20.67	0.00	0.00	3.06
813	1397	2.431683	GAAGACAGGGGTGCTGCA	59.568	61.111	0.00	0.00	0.00	4.41
821	1405	1.228552	GGGGTGCTGCAAGAGGAAA	60.229	57.895	2.77	0.00	34.07	3.13
825	1409	1.956477	GGTGCTGCAAGAGGAAAAAGA	59.044	47.619	2.77	0.00	34.07	2.52
826	1410	2.362077	GGTGCTGCAAGAGGAAAAAGAA	59.638	45.455	2.77	0.00	34.07	2.52
918	1527	3.785859	GGCGCAGATCAGTCCCCA	61.786	66.667	10.83	0.00	0.00	4.96
922	1531	1.533625	CGCAGATCAGTCCCCAAAAA	58.466	50.000	0.00	0.00	0.00	1.94
923	1532	1.200020	CGCAGATCAGTCCCCAAAAAC	59.800	52.381	0.00	0.00	0.00	2.43
924	1533	2.238521	GCAGATCAGTCCCCAAAAACA	58.761	47.619	0.00	0.00	0.00	2.83
925	1534	2.627699	GCAGATCAGTCCCCAAAAACAA	59.372	45.455	0.00	0.00	0.00	2.83
926	1535	3.069443	GCAGATCAGTCCCCAAAAACAAA	59.931	43.478	0.00	0.00	0.00	2.83
927	1536	4.797275	GCAGATCAGTCCCCAAAAACAAAG	60.797	45.833	0.00	0.00	0.00	2.77
928	1537	4.584325	CAGATCAGTCCCCAAAAACAAAGA	59.416	41.667	0.00	0.00	0.00	2.52
929	1538	5.068987	CAGATCAGTCCCCAAAAACAAAGAA	59.931	40.000	0.00	0.00	0.00	2.52
930	1539	5.660864	AGATCAGTCCCCAAAAACAAAGAAA	59.339	36.000	0.00	0.00	0.00	2.52
931	1540	5.746990	TCAGTCCCCAAAAACAAAGAAAA	57.253	34.783	0.00	0.00	0.00	2.29
932	1541	6.115448	TCAGTCCCCAAAAACAAAGAAAAA	57.885	33.333	0.00	0.00	0.00	1.94
933	1542	6.169800	TCAGTCCCCAAAAACAAAGAAAAAG	58.830	36.000	0.00	0.00	0.00	2.27
934	1543	5.353956	CAGTCCCCAAAAACAAAGAAAAAGG	59.646	40.000	0.00	0.00	0.00	3.11
935	1544	5.249622	AGTCCCCAAAAACAAAGAAAAAGGA	59.750	36.000	0.00	0.00	0.00	3.36
936	1545	5.353123	GTCCCCAAAAACAAAGAAAAAGGAC	59.647	40.000	0.00	0.00	32.86	3.85
937	1546	4.331443	CCCCAAAAACAAAGAAAAAGGACG	59.669	41.667	0.00	0.00	0.00	4.79
938	1547	4.331443	CCCAAAAACAAAGAAAAAGGACGG	59.669	41.667	0.00	0.00	0.00	4.79
939	1548	4.201773	CCAAAAACAAAGAAAAAGGACGGC	60.202	41.667	0.00	0.00	0.00	5.68
942	1551	3.436700	ACAAAGAAAAAGGACGGCAAG	57.563	42.857	0.00	0.00	0.00	4.01
944	1553	1.398692	AAGAAAAAGGACGGCAAGCA	58.601	45.000	0.00	0.00	0.00	3.91
954	1563	1.592131	CGGCAAGCAAAGCAAAGCA	60.592	52.632	0.00	0.00	0.00	3.91
958	1567	1.300388	AAGCAAAGCAAAGCAGCCG	60.300	52.632	0.00	0.00	34.23	5.52
971	1580	1.743623	CAGCCGCCAACGAATACCA	60.744	57.895	0.00	0.00	43.93	3.25
979	1588	2.874457	GCCAACGAATACCAAGTCCACT	60.874	50.000	0.00	0.00	0.00	4.00
980	1589	3.408634	CCAACGAATACCAAGTCCACTT	58.591	45.455	0.00	0.00	36.45	3.16
981	1590	3.435671	CCAACGAATACCAAGTCCACTTC	59.564	47.826	0.00	0.00	33.11	3.01
982	1591	3.329929	ACGAATACCAAGTCCACTTCC	57.670	47.619	0.00	0.00	33.11	3.46
983	1592	2.027469	ACGAATACCAAGTCCACTTCCC	60.027	50.000	0.00	0.00	33.11	3.97
984	1593	2.629051	GAATACCAAGTCCACTTCCCG	58.371	52.381	0.00	0.00	33.11	5.14
985	1594	0.252197	ATACCAAGTCCACTTCCCGC	59.748	55.000	0.00	0.00	33.11	6.13
986	1595	1.122632	TACCAAGTCCACTTCCCGCA	61.123	55.000	0.00	0.00	33.11	5.69
987	1596	1.672356	CCAAGTCCACTTCCCGCAG	60.672	63.158	0.00	0.00	33.11	5.18
988	1597	2.032681	AAGTCCACTTCCCGCAGC	59.967	61.111	0.00	0.00	0.00	5.25
989	1598	2.520536	AAGTCCACTTCCCGCAGCT	61.521	57.895	0.00	0.00	0.00	4.24
990	1599	2.435059	GTCCACTTCCCGCAGCTC	60.435	66.667	0.00	0.00	0.00	4.09
991	1600	3.706373	TCCACTTCCCGCAGCTCC	61.706	66.667	0.00	0.00	0.00	4.70
992	1601	3.710722	CCACTTCCCGCAGCTCCT	61.711	66.667	0.00	0.00	0.00	3.69
993	1602	2.125350	CACTTCCCGCAGCTCCTC	60.125	66.667	0.00	0.00	0.00	3.71
1063	1672	3.531207	CTCAGAGATCCGGCCGCA	61.531	66.667	22.85	4.78	0.00	5.69
1791	2405	1.708993	CCGTGTGGGATGGGATGGAT	61.709	60.000	0.00	0.00	38.47	3.41
1830	2444	1.134401	GGGCACATCCTCTTCATCGAA	60.134	52.381	0.00	0.00	34.39	3.71
1833	2447	3.525537	GCACATCCTCTTCATCGAAGAA	58.474	45.455	7.76	2.74	46.18	2.52
1903	2517	0.586319	TTTGAAGCCGAAGAAGTGCG	59.414	50.000	0.00	0.00	0.00	5.34
2055	2679	1.884067	GCCAAGGCTAAGCAGTTCTGT	60.884	52.381	3.29	0.00	38.26	3.41
2085	2709	8.190326	TCGATGAGTACAATTGGGATATAACT	57.810	34.615	10.83	1.62	0.00	2.24
2133	2758	2.563179	TGGAGCTCCTGTTTACAGTCTC	59.437	50.000	32.28	10.76	42.27	3.36
2196	2821	1.073897	GCACCAAGGCCAAGACTCT	59.926	57.895	5.01	0.00	0.00	3.24
2228	2853	2.137528	TGGATAATGGCGCGGGAGA	61.138	57.895	8.83	0.00	0.00	3.71
2337	2962	1.482365	GGTTTCAAAGGATGGGGTGGT	60.482	52.381	0.00	0.00	0.00	4.16
2446	3071	2.142319	GGCACACGAATTTTGGCATTT	58.858	42.857	0.00	0.00	35.91	2.32
2565	3191	9.488762	TTGTAGAATAGTTCTCTATTGGGAGAA	57.511	33.333	5.40	3.22	46.22	2.87
2609	3236	6.374417	ACTTTCCCAACTGTATGATGTACT	57.626	37.500	0.00	0.00	0.00	2.73
2720	3352	5.118990	TGAAGTACTGCTTTCTATGCATCC	58.881	41.667	0.19	0.00	39.86	3.51
2944	3596	7.175816	TGCATGGTGTTTCTATTTTTAGCTACA	59.824	33.333	0.00	0.00	0.00	2.74
2972	3624	9.752961	GTATTTCTTAGAACCCATCTACTCTTC	57.247	37.037	0.00	0.00	40.38	2.87
2982	3635	5.721960	ACCCATCTACTCTTCAGTTACATGT	59.278	40.000	2.69	2.69	33.62	3.21
3023	3676	5.856126	TGTAGCTGGTGAAATTTTAGACG	57.144	39.130	0.00	0.00	0.00	4.18
3151	3806	4.889409	CCTAAAGTTGTGGCCATATCATGT	59.111	41.667	9.72	0.00	0.00	3.21
3165	3820	7.255277	GGCCATATCATGTCCTAAAGTTTTCTC	60.255	40.741	0.00	0.00	0.00	2.87
3175	3830	7.387948	TGTCCTAAAGTTTTCTCTATGTGCTTC	59.612	37.037	0.00	0.00	0.00	3.86
3201	3861	9.388506	CTTACCATTCACTGTAAGAAGATGATT	57.611	33.333	3.89	0.00	44.22	2.57
3313	3973	2.254546	TCTGTGGTGGTTGCTGTTAG	57.745	50.000	0.00	0.00	0.00	2.34
3344	4004	0.393537	GGGCTGGTCTGTTCATGGAG	60.394	60.000	0.00	0.00	0.00	3.86
3381	4041	1.494721	ACCAAACTCCAGCTTTCTCCA	59.505	47.619	0.00	0.00	0.00	3.86
3388	4048	1.094073	CCAGCTTTCTCCATCCGCTG	61.094	60.000	0.00	0.00	45.60	5.18
3399	4059	4.705507	TCTCCATCCGCTGGTAGTATATTC	59.294	45.833	2.61	0.00	46.08	1.75
3472	4132	5.525378	AGCCTCTTTTATCAGTAAGCATTCG	59.475	40.000	0.00	0.00	0.00	3.34
3489	4149	4.761739	GCATTCGATTTCCCTGGAATCATA	59.238	41.667	0.00	0.00	33.79	2.15
3494	4154	9.759473	ATTCGATTTCCCTGGAATCATAATATT	57.241	29.630	0.00	0.00	33.79	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	79	1.362584	TGGAGGAGGAACATGGAGAGA	59.637	52.381	0.00	0.00	0.00	3.10
107	120	2.368221	GAGTAGCATGCTCCCTGAGAAT	59.632	50.000	26.57	3.25	42.45	2.40
349	903	1.100463	TCAGTTGCAGCTTTTCGGCA	61.100	50.000	0.00	0.00	43.97	5.69
615	1175	4.584325	ACCAGCATCTTCTTTTTGTGCTTA	59.416	37.500	0.00	0.00	43.03	3.09
649	1209	3.699955	CTCGTCGCTGGGATTCGCA	62.700	63.158	3.19	3.19	0.00	5.10
747	1307	3.763356	ATCTCGTGCAGCTCGGCA	61.763	61.111	16.41	4.30	42.53	5.69
766	1349	4.063967	CACGCACGCACCCTCCTA	62.064	66.667	0.00	0.00	0.00	2.94
813	1397	5.440610	TGTCTCAGCTTTCTTTTTCCTCTT	58.559	37.500	0.00	0.00	0.00	2.85
821	1405	3.279434	ACGGTTTGTCTCAGCTTTCTTT	58.721	40.909	0.00	0.00	0.00	2.52
825	1409	4.450082	AAAAACGGTTTGTCTCAGCTTT	57.550	36.364	6.92	0.00	0.00	3.51
826	1410	4.201980	GGTAAAAACGGTTTGTCTCAGCTT	60.202	41.667	6.92	0.00	0.00	3.74
918	1527	4.570930	TGCCGTCCTTTTTCTTTGTTTTT	58.429	34.783	0.00	0.00	0.00	1.94
922	1531	2.481276	GCTTGCCGTCCTTTTTCTTTGT	60.481	45.455	0.00	0.00	0.00	2.83
923	1532	2.127251	GCTTGCCGTCCTTTTTCTTTG	58.873	47.619	0.00	0.00	0.00	2.77
924	1533	1.754226	TGCTTGCCGTCCTTTTTCTTT	59.246	42.857	0.00	0.00	0.00	2.52
925	1534	1.398692	TGCTTGCCGTCCTTTTTCTT	58.601	45.000	0.00	0.00	0.00	2.52
926	1535	1.398692	TTGCTTGCCGTCCTTTTTCT	58.601	45.000	0.00	0.00	0.00	2.52
927	1536	2.127251	CTTTGCTTGCCGTCCTTTTTC	58.873	47.619	0.00	0.00	0.00	2.29
928	1537	1.806247	GCTTTGCTTGCCGTCCTTTTT	60.806	47.619	0.00	0.00	0.00	1.94
929	1538	0.249447	GCTTTGCTTGCCGTCCTTTT	60.249	50.000	0.00	0.00	0.00	2.27
930	1539	1.363807	GCTTTGCTTGCCGTCCTTT	59.636	52.632	0.00	0.00	0.00	3.11
931	1540	1.391157	TTGCTTTGCTTGCCGTCCTT	61.391	50.000	0.00	0.00	0.00	3.36
932	1541	1.391157	TTTGCTTTGCTTGCCGTCCT	61.391	50.000	0.00	0.00	0.00	3.85
933	1542	0.940991	CTTTGCTTTGCTTGCCGTCC	60.941	55.000	0.00	0.00	0.00	4.79
934	1543	1.551503	GCTTTGCTTTGCTTGCCGTC	61.552	55.000	0.00	0.00	0.00	4.79
935	1544	1.592400	GCTTTGCTTTGCTTGCCGT	60.592	52.632	0.00	0.00	0.00	5.68
936	1545	1.554042	CTGCTTTGCTTTGCTTGCCG	61.554	55.000	0.00	0.00	0.00	5.69
937	1546	1.838568	GCTGCTTTGCTTTGCTTGCC	61.839	55.000	0.00	0.00	0.00	4.52
938	1547	1.568025	GCTGCTTTGCTTTGCTTGC	59.432	52.632	0.00	0.00	0.00	4.01
939	1548	1.554042	CGGCTGCTTTGCTTTGCTTG	61.554	55.000	0.00	0.00	0.00	4.01
942	1551	3.408851	GCGGCTGCTTTGCTTTGC	61.409	61.111	11.21	0.00	38.39	3.68
944	1553	2.795110	TTGGCGGCTGCTTTGCTTT	61.795	52.632	18.85	0.00	42.25	3.51
954	1563	1.003112	TTGGTATTCGTTGGCGGCT	60.003	52.632	11.43	0.00	38.89	5.52
958	1567	1.467342	GTGGACTTGGTATTCGTTGGC	59.533	52.381	0.00	0.00	0.00	4.52
971	1580	2.032681	GCTGCGGGAAGTGGACTT	59.967	61.111	0.00	0.00	39.23	3.01
979	1588	3.077556	GAGGAGGAGCTGCGGGAA	61.078	66.667	0.00	0.00	0.00	3.97
982	1591	3.535962	GAGGAGGAGGAGCTGCGG	61.536	72.222	0.00	0.00	0.00	5.69
983	1592	3.535962	GGAGGAGGAGGAGCTGCG	61.536	72.222	0.00	0.00	0.00	5.18
984	1593	2.042025	AGGAGGAGGAGGAGCTGC	60.042	66.667	0.00	0.00	0.00	5.25
985	1594	1.457455	GGAGGAGGAGGAGGAGCTG	60.457	68.421	0.00	0.00	0.00	4.24
986	1595	3.024217	GGAGGAGGAGGAGGAGCT	58.976	66.667	0.00	0.00	0.00	4.09
987	1596	2.520741	CGGAGGAGGAGGAGGAGC	60.521	72.222	0.00	0.00	0.00	4.70
988	1597	2.520741	GCGGAGGAGGAGGAGGAG	60.521	72.222	0.00	0.00	0.00	3.69
989	1598	4.144727	GGCGGAGGAGGAGGAGGA	62.145	72.222	0.00	0.00	0.00	3.71
991	1600	3.984186	TTGGGCGGAGGAGGAGGAG	62.984	68.421	0.00	0.00	0.00	3.69
992	1601	3.332393	ATTGGGCGGAGGAGGAGGA	62.332	63.158	0.00	0.00	0.00	3.71
993	1602	2.770048	ATTGGGCGGAGGAGGAGG	60.770	66.667	0.00	0.00	0.00	4.30
1338	1952	4.704103	AGGGAGAGGGACAGCGCA	62.704	66.667	11.47	0.00	0.00	6.09
1729	2343	2.508891	GCTTCAGCGACACGATCCG	61.509	63.158	0.00	0.00	0.00	4.18
1791	2405	1.186200	CATCGAAGTCCCTGGTCTCA	58.814	55.000	0.00	0.00	0.00	3.27
1830	2444	3.108376	GGGGAAGATGTAGTGGTCTTCT	58.892	50.000	13.02	0.00	46.01	2.85
1833	2447	2.642171	TGGGGAAGATGTAGTGGTCT	57.358	50.000	0.00	0.00	0.00	3.85
1903	2517	1.383456	TTGACGGCATAGCATTGGGC	61.383	55.000	0.00	0.00	45.30	5.36
2055	2679	4.221924	TCCCAATTGTACTCATCGAAGTCA	59.778	41.667	4.43	0.00	0.00	3.41
2085	2709	1.134340	GGATACACGGTTGCCCACATA	60.134	52.381	0.00	0.00	0.00	2.29
2133	2758	2.122636	CTCCTCCTAGGCCCCCTG	60.123	72.222	2.96	0.00	34.61	4.45
2196	2821	5.394005	GCCATTATCCACACAAACATTGCTA	60.394	40.000	0.00	0.00	0.00	3.49
2228	2853	3.003482	GTCGATGGCATCTAGTTCTACGT	59.997	47.826	23.97	0.00	0.00	3.57
2446	3071	4.568072	ACACTACAACAAGGGCATCATA	57.432	40.909	0.00	0.00	0.00	2.15
2559	3185	2.222227	AGTCCAAGGCAATTTCTCCC	57.778	50.000	0.00	0.00	0.00	4.30
2565	3191	2.101640	AACCCAAGTCCAAGGCAATT	57.898	45.000	0.00	0.00	0.00	2.32
2720	3352	6.211515	GCATTAAGCATCCCTGAATGTTAAG	58.788	40.000	3.15	0.00	42.33	1.85
2745	3378	6.262496	CAGTAAGAGGCATTGATCATCAACAT	59.738	38.462	0.98	0.00	39.45	2.71
2867	3519	6.422344	ACATATGCATATGATGGCCAAAAA	57.578	33.333	40.23	6.12	42.05	1.94
2944	3596	9.440761	AGAGTAGATGGGTTCTAAGAAATACAT	57.559	33.333	0.00	0.00	38.67	2.29
2960	3612	6.473778	CGAACATGTAACTGAAGAGTAGATGG	59.526	42.308	0.00	0.00	0.00	3.51
2972	3624	7.865889	TCCTATAATACTGCGAACATGTAACTG	59.134	37.037	0.00	0.00	0.00	3.16
2982	3635	7.598869	CAGCTACAAATCCTATAATACTGCGAA	59.401	37.037	0.00	0.00	0.00	4.70
3023	3676	5.474578	TGAGTATCAATATCTCTGTGCCC	57.525	43.478	0.00	0.00	45.97	5.36
3151	3806	7.680730	AGAAGCACATAGAGAAAACTTTAGGA	58.319	34.615	0.00	0.00	0.00	2.94
3165	3820	5.877012	ACAGTGAATGGTAAGAAGCACATAG	59.123	40.000	0.00	0.00	35.57	2.23
3175	3830	8.954950	ATCATCTTCTTACAGTGAATGGTAAG	57.045	34.615	0.00	0.00	44.88	2.34
3201	3861	7.651304	CCTAATTTTGTTGTGCAGTAATGTTCA	59.349	33.333	0.00	0.00	0.00	3.18
3245	3905	1.747355	GTGCACTCCATGGATCCTTTG	59.253	52.381	16.63	10.56	0.00	2.77
3253	3913	1.100510	CCTGATTGTGCACTCCATGG	58.899	55.000	19.41	4.97	0.00	3.66
3300	3960	4.697352	ACATTCAGATCTAACAGCAACCAC	59.303	41.667	0.00	0.00	0.00	4.16
3313	3973	2.019984	GACCAGCCCAACATTCAGATC	58.980	52.381	0.00	0.00	0.00	2.75
3344	4004	2.028130	TGGTTGTGATTTGTGGTCCAC	58.972	47.619	15.64	15.64	34.56	4.02
3381	4041	4.333690	AGTCGAATATACTACCAGCGGAT	58.666	43.478	1.50	0.00	0.00	4.18
3388	4048	6.127952	GGGTCAGATGAGTCGAATATACTACC	60.128	46.154	0.00	0.00	0.00	3.18
3399	4059	1.186200	TTCCAGGGTCAGATGAGTCG	58.814	55.000	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.