Multiple sequence alignment - TraesCS6B01G392900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G392900 chr6B 100.000 5433 0 0 1 5433 667901039 667895607 0.000000e+00 10033.0
1 TraesCS6B01G392900 chr6B 79.179 341 34 16 23 342 558910551 558910875 9.230000e-48 202.0
2 TraesCS6B01G392900 chr6B 87.826 115 14 0 1 115 558910421 558910535 9.490000e-28 135.0
3 TraesCS6B01G392900 chr6A 91.917 3489 166 56 1482 4930 591267321 591263909 0.000000e+00 4774.0
4 TraesCS6B01G392900 chr6A 89.922 645 26 21 805 1445 591267932 591267323 0.000000e+00 795.0
5 TraesCS6B01G392900 chr6A 92.641 231 17 0 5196 5426 591263805 591263575 3.140000e-87 333.0
6 TraesCS6B01G392900 chr6A 97.297 111 3 0 596 706 591268076 591267966 7.180000e-44 189.0
7 TraesCS6B01G392900 chr6A 86.000 100 14 0 1205 1304 181563849 181563948 2.070000e-19 108.0
8 TraesCS6B01G392900 chr6D 94.303 2598 93 22 2389 4962 441898300 441895734 0.000000e+00 3927.0
9 TraesCS6B01G392900 chr6D 88.859 1122 62 34 591 1690 441900128 441899048 0.000000e+00 1321.0
10 TraesCS6B01G392900 chr6D 91.463 656 28 14 1750 2393 441899018 441898379 0.000000e+00 876.0
11 TraesCS6B01G392900 chr6D 87.444 223 14 7 5208 5424 441895419 441895205 1.510000e-60 244.0
12 TraesCS6B01G392900 chr6D 86.000 100 14 0 1205 1304 138904815 138904914 2.070000e-19 108.0
13 TraesCS6B01G392900 chr6D 95.238 42 1 1 2067 2108 441900335 441900295 1.260000e-06 65.8
14 TraesCS6B01G392900 chr3B 97.543 407 9 1 2339 2744 242896005 242895599 0.000000e+00 695.0
15 TraesCS6B01G392900 chr3B 89.868 227 8 4 2013 2236 242896217 242896003 1.490000e-70 278.0
16 TraesCS6B01G392900 chr1A 88.395 517 29 10 1 486 479637130 479636614 1.300000e-165 593.0
17 TraesCS6B01G392900 chr5A 84.211 285 26 7 222 487 693359634 693359918 5.400000e-65 259.0
18 TraesCS6B01G392900 chr5A 84.255 235 20 9 1 220 693359336 693359568 4.260000e-51 213.0
19 TraesCS6B01G392900 chr5A 86.607 112 6 4 5316 5426 471466388 471466491 1.240000e-21 115.0
20 TraesCS6B01G392900 chr5A 100.000 32 0 0 456 487 693352285 693352254 5.880000e-05 60.2
21 TraesCS6B01G392900 chr7A 87.736 106 13 0 1199 1304 567456848 567456743 2.050000e-24 124.0
22 TraesCS6B01G392900 chr1B 86.087 115 16 0 1 115 22647071 22647185 2.050000e-24 124.0
23 TraesCS6B01G392900 chr1B 100.000 32 0 0 459 490 22639406 22639375 5.880000e-05 60.2
24 TraesCS6B01G392900 chr5D 81.875 160 15 8 5271 5426 369064879 369065028 7.390000e-24 122.0
25 TraesCS6B01G392900 chr3D 91.111 90 8 0 1207 1296 363871932 363871843 7.390000e-24 122.0
26 TraesCS6B01G392900 chr3A 91.111 90 8 0 1207 1296 485014668 485014579 7.390000e-24 122.0
27 TraesCS6B01G392900 chr5B 81.437 167 14 10 5264 5423 437562439 437562595 2.660000e-23 121.0
28 TraesCS6B01G392900 chr7D 86.239 109 15 0 1199 1307 500974630 500974522 9.560000e-23 119.0
29 TraesCS6B01G392900 chr7D 100.000 32 0 0 457 488 69135763 69135794 5.880000e-05 60.2
30 TraesCS6B01G392900 chr7B 86.792 106 14 0 1199 1304 529958354 529958249 9.560000e-23 119.0
31 TraesCS6B01G392900 chr2A 100.000 29 0 0 2548 2576 735492132 735492160 3.000000e-03 54.7
32 TraesCS6B01G392900 chr2A 100.000 28 0 0 4963 4990 373201937 373201964 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G392900 chr6B 667895607 667901039 5432 True 10033.00 10033 100.00000 1 5433 1 chr6B.!!$R1 5432
1 TraesCS6B01G392900 chr6A 591263575 591268076 4501 True 1522.75 4774 92.94425 596 5426 4 chr6A.!!$R1 4830
2 TraesCS6B01G392900 chr6D 441895205 441900335 5130 True 1286.76 3927 91.46140 591 5424 5 chr6D.!!$R1 4833
3 TraesCS6B01G392900 chr3B 242895599 242896217 618 True 486.50 695 93.70550 2013 2744 2 chr3B.!!$R1 731
4 TraesCS6B01G392900 chr1A 479636614 479637130 516 True 593.00 593 88.39500 1 486 1 chr1A.!!$R1 485
5 TraesCS6B01G392900 chr5A 693359336 693359918 582 False 236.00 259 84.23300 1 487 2 chr5A.!!$F2 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 748 0.112606 TCTCTCGTTGTCTCCCACCT 59.887 55.0 0.00 0.00 0.00 4.00 F
1378 1489 0.110486 GCCTCCAGTTTCCCTCAACA 59.890 55.0 0.00 0.00 0.00 3.33 F
1509 1632 0.671472 GGATTTTGGCAGGCTGTTGC 60.671 55.0 17.16 1.99 43.34 4.17 F
1667 1791 0.879090 AGGTGGCGTTCGGAATTTTC 59.121 50.0 0.00 0.00 0.00 2.29 F
1690 1814 0.976641 TTGACCTGGCGAAGATCTGT 59.023 50.0 0.00 0.00 0.00 3.41 F
3582 3822 0.108041 TGCCGGTCGTTTATTCTCCC 60.108 55.0 1.90 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2127 0.729116 CAACAGCAGAATAGCACCCG 59.271 55.000 0.00 0.00 36.85 5.28 R
3280 3512 3.028130 TGTTATACTCCGATGGCTGTCA 58.972 45.455 0.00 0.00 0.00 3.58 R
3537 3777 3.547468 CAGAACCAAAGTGAAAAAGCGTG 59.453 43.478 0.00 0.00 0.00 5.34 R
3580 3820 2.301346 GGCAGTAAGGTGATGATTGGG 58.699 52.381 0.00 0.00 0.00 4.12 R
3603 3843 4.362932 TTTTGTCGATGTTCTGCAAACA 57.637 36.364 14.09 14.09 34.31 2.83 R
5175 5606 0.107752 TAACGACCCCAATAACGCCC 60.108 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 3.691342 CGGGACCTTGAGGACGCA 61.691 66.667 14.58 0.00 41.37 5.24
186 200 2.770048 CGGCAGGGGGAGAAGGAT 60.770 66.667 0.00 0.00 0.00 3.24
220 299 1.123861 TCCTGGAGTGCAAGCAGAGT 61.124 55.000 0.00 0.00 0.00 3.24
297 376 0.463620 GAAGCGAGCAGGAAGAGGAT 59.536 55.000 0.00 0.00 0.00 3.24
301 380 0.534412 CGAGCAGGAAGAGGATGTGT 59.466 55.000 0.00 0.00 0.00 3.72
371 467 1.437986 GCGAGGTGCTAAGGATCGT 59.562 57.895 0.00 0.00 41.73 3.73
393 489 0.178891 AGGTGGAGGGAGCTTGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
491 590 2.885616 GGGACGGAGGGAGTATTATGA 58.114 52.381 0.00 0.00 0.00 2.15
492 591 3.236896 GGGACGGAGGGAGTATTATGAA 58.763 50.000 0.00 0.00 0.00 2.57
493 592 3.006644 GGGACGGAGGGAGTATTATGAAC 59.993 52.174 0.00 0.00 0.00 3.18
494 593 3.006644 GGACGGAGGGAGTATTATGAACC 59.993 52.174 0.00 0.00 0.00 3.62
495 594 3.640029 GACGGAGGGAGTATTATGAACCA 59.360 47.826 0.00 0.00 0.00 3.67
496 595 4.035112 ACGGAGGGAGTATTATGAACCAA 58.965 43.478 0.00 0.00 0.00 3.67
497 596 4.472108 ACGGAGGGAGTATTATGAACCAAA 59.528 41.667 0.00 0.00 0.00 3.28
498 597 5.057149 CGGAGGGAGTATTATGAACCAAAG 58.943 45.833 0.00 0.00 0.00 2.77
499 598 5.163343 CGGAGGGAGTATTATGAACCAAAGA 60.163 44.000 0.00 0.00 0.00 2.52
500 599 6.292150 GGAGGGAGTATTATGAACCAAAGAG 58.708 44.000 0.00 0.00 0.00 2.85
501 600 6.253946 AGGGAGTATTATGAACCAAAGAGG 57.746 41.667 0.00 0.00 45.67 3.69
502 601 4.822350 GGGAGTATTATGAACCAAAGAGGC 59.178 45.833 0.00 0.00 43.14 4.70
503 602 4.822350 GGAGTATTATGAACCAAAGAGGCC 59.178 45.833 0.00 0.00 43.14 5.19
504 603 5.437060 GAGTATTATGAACCAAAGAGGCCA 58.563 41.667 5.01 0.00 43.14 5.36
505 604 6.018433 AGTATTATGAACCAAAGAGGCCAT 57.982 37.500 5.01 0.00 43.14 4.40
506 605 7.149202 AGTATTATGAACCAAAGAGGCCATA 57.851 36.000 5.01 0.00 43.14 2.74
507 606 6.998673 AGTATTATGAACCAAAGAGGCCATAC 59.001 38.462 5.01 0.00 43.14 2.39
508 607 3.737559 ATGAACCAAAGAGGCCATACA 57.262 42.857 5.01 0.00 43.14 2.29
509 608 3.517296 TGAACCAAAGAGGCCATACAA 57.483 42.857 5.01 0.00 43.14 2.41
510 609 4.046286 TGAACCAAAGAGGCCATACAAT 57.954 40.909 5.01 0.00 43.14 2.71
511 610 5.186256 TGAACCAAAGAGGCCATACAATA 57.814 39.130 5.01 0.00 43.14 1.90
512 611 4.947388 TGAACCAAAGAGGCCATACAATAC 59.053 41.667 5.01 0.00 43.14 1.89
513 612 4.584638 ACCAAAGAGGCCATACAATACA 57.415 40.909 5.01 0.00 43.14 2.29
514 613 4.270008 ACCAAAGAGGCCATACAATACAC 58.730 43.478 5.01 0.00 43.14 2.90
515 614 3.312421 CCAAAGAGGCCATACAATACACG 59.688 47.826 5.01 0.00 0.00 4.49
516 615 3.906720 AAGAGGCCATACAATACACGT 57.093 42.857 5.01 0.00 0.00 4.49
517 616 3.906720 AGAGGCCATACAATACACGTT 57.093 42.857 5.01 0.00 0.00 3.99
518 617 4.216411 AGAGGCCATACAATACACGTTT 57.784 40.909 5.01 0.00 0.00 3.60
519 618 4.189231 AGAGGCCATACAATACACGTTTC 58.811 43.478 5.01 0.00 0.00 2.78
520 619 4.081087 AGAGGCCATACAATACACGTTTCT 60.081 41.667 5.01 0.00 0.00 2.52
521 620 4.585879 AGGCCATACAATACACGTTTCTT 58.414 39.130 5.01 0.00 0.00 2.52
522 621 5.736813 AGGCCATACAATACACGTTTCTTA 58.263 37.500 5.01 0.00 0.00 2.10
523 622 6.174760 AGGCCATACAATACACGTTTCTTAA 58.825 36.000 5.01 0.00 0.00 1.85
524 623 6.655848 AGGCCATACAATACACGTTTCTTAAA 59.344 34.615 5.01 0.00 0.00 1.52
525 624 7.338449 AGGCCATACAATACACGTTTCTTAAAT 59.662 33.333 5.01 0.00 0.00 1.40
526 625 7.971722 GGCCATACAATACACGTTTCTTAAATT 59.028 33.333 0.00 0.00 0.00 1.82
527 626 9.349145 GCCATACAATACACGTTTCTTAAATTT 57.651 29.630 0.00 0.00 0.00 1.82
531 630 8.791355 ACAATACACGTTTCTTAAATTTGGAC 57.209 30.769 0.00 0.00 0.00 4.02
532 631 7.588488 ACAATACACGTTTCTTAAATTTGGACG 59.412 33.333 0.00 6.53 35.39 4.79
533 632 5.738118 ACACGTTTCTTAAATTTGGACGA 57.262 34.783 15.42 0.63 33.67 4.20
534 633 5.744490 ACACGTTTCTTAAATTTGGACGAG 58.256 37.500 15.42 11.78 33.67 4.18
535 634 5.524646 ACACGTTTCTTAAATTTGGACGAGA 59.475 36.000 15.42 4.31 33.67 4.04
536 635 6.071463 CACGTTTCTTAAATTTGGACGAGAG 58.929 40.000 15.42 6.17 33.67 3.20
537 636 5.987347 ACGTTTCTTAAATTTGGACGAGAGA 59.013 36.000 15.42 1.72 33.67 3.10
538 637 6.480981 ACGTTTCTTAAATTTGGACGAGAGAA 59.519 34.615 15.42 6.11 33.67 2.87
539 638 7.011669 ACGTTTCTTAAATTTGGACGAGAGAAA 59.988 33.333 15.42 9.99 33.67 2.52
540 639 8.015658 CGTTTCTTAAATTTGGACGAGAGAAAT 58.984 33.333 0.00 0.00 35.25 2.17
541 640 9.331106 GTTTCTTAAATTTGGACGAGAGAAATC 57.669 33.333 0.00 0.00 35.25 2.17
542 641 8.615878 TTCTTAAATTTGGACGAGAGAAATCA 57.384 30.769 0.00 0.00 0.00 2.57
543 642 8.029642 TCTTAAATTTGGACGAGAGAAATCAC 57.970 34.615 0.00 0.00 0.00 3.06
544 643 7.659799 TCTTAAATTTGGACGAGAGAAATCACA 59.340 33.333 0.00 0.00 0.00 3.58
545 644 6.633500 AAATTTGGACGAGAGAAATCACAA 57.367 33.333 0.00 0.00 0.00 3.33
546 645 6.633500 AATTTGGACGAGAGAAATCACAAA 57.367 33.333 0.00 0.00 0.00 2.83
547 646 5.418310 TTTGGACGAGAGAAATCACAAAC 57.582 39.130 0.00 0.00 0.00 2.93
548 647 4.066646 TGGACGAGAGAAATCACAAACA 57.933 40.909 0.00 0.00 0.00 2.83
549 648 4.641396 TGGACGAGAGAAATCACAAACAT 58.359 39.130 0.00 0.00 0.00 2.71
550 649 5.063204 TGGACGAGAGAAATCACAAACATT 58.937 37.500 0.00 0.00 0.00 2.71
551 650 5.530915 TGGACGAGAGAAATCACAAACATTT 59.469 36.000 0.00 0.00 0.00 2.32
552 651 6.080406 GGACGAGAGAAATCACAAACATTTC 58.920 40.000 0.00 0.00 39.58 2.17
560 659 6.697019 AGAAATCACAAACATTTCTCAAACCG 59.303 34.615 2.46 0.00 44.00 4.44
561 660 4.300189 TCACAAACATTTCTCAAACCGG 57.700 40.909 0.00 0.00 0.00 5.28
562 661 2.794350 CACAAACATTTCTCAAACCGGC 59.206 45.455 0.00 0.00 0.00 6.13
563 662 2.428890 ACAAACATTTCTCAAACCGGCA 59.571 40.909 0.00 0.00 0.00 5.69
564 663 3.052036 CAAACATTTCTCAAACCGGCAG 58.948 45.455 0.00 0.00 0.00 4.85
565 664 2.270352 ACATTTCTCAAACCGGCAGA 57.730 45.000 0.00 0.00 0.00 4.26
566 665 2.582052 ACATTTCTCAAACCGGCAGAA 58.418 42.857 0.00 0.97 0.00 3.02
567 666 2.955660 ACATTTCTCAAACCGGCAGAAA 59.044 40.909 16.49 16.49 39.77 2.52
568 667 3.383185 ACATTTCTCAAACCGGCAGAAAA 59.617 39.130 17.54 6.28 39.11 2.29
569 668 4.142049 ACATTTCTCAAACCGGCAGAAAAA 60.142 37.500 17.54 7.26 39.11 1.94
570 669 3.708563 TTCTCAAACCGGCAGAAAAAG 57.291 42.857 0.00 0.00 0.00 2.27
571 670 2.650322 TCTCAAACCGGCAGAAAAAGT 58.350 42.857 0.00 0.00 0.00 2.66
572 671 3.020984 TCTCAAACCGGCAGAAAAAGTT 58.979 40.909 0.00 0.00 0.00 2.66
573 672 3.445805 TCTCAAACCGGCAGAAAAAGTTT 59.554 39.130 0.00 0.00 0.00 2.66
574 673 4.081917 TCTCAAACCGGCAGAAAAAGTTTT 60.082 37.500 0.00 0.00 0.00 2.43
575 674 4.177783 TCAAACCGGCAGAAAAAGTTTTC 58.822 39.130 0.00 8.21 45.22 2.29
576 675 3.878160 AACCGGCAGAAAAAGTTTTCA 57.122 38.095 16.62 0.00 46.81 2.69
577 676 4.400529 AACCGGCAGAAAAAGTTTTCAT 57.599 36.364 16.62 2.18 46.81 2.57
578 677 4.400529 ACCGGCAGAAAAAGTTTTCATT 57.599 36.364 16.62 0.00 46.81 2.57
579 678 4.119136 ACCGGCAGAAAAAGTTTTCATTG 58.881 39.130 16.62 9.43 46.81 2.82
580 679 4.119136 CCGGCAGAAAAAGTTTTCATTGT 58.881 39.130 16.62 0.00 46.81 2.71
581 680 5.163499 ACCGGCAGAAAAAGTTTTCATTGTA 60.163 36.000 16.62 0.00 46.81 2.41
582 681 5.925969 CCGGCAGAAAAAGTTTTCATTGTAT 59.074 36.000 16.62 0.00 46.81 2.29
583 682 6.423604 CCGGCAGAAAAAGTTTTCATTGTATT 59.576 34.615 16.62 0.00 46.81 1.89
584 683 7.042119 CCGGCAGAAAAAGTTTTCATTGTATTT 60.042 33.333 16.62 0.00 46.81 1.40
585 684 8.003784 CGGCAGAAAAAGTTTTCATTGTATTTC 58.996 33.333 16.62 0.00 46.81 2.17
586 685 8.282592 GGCAGAAAAAGTTTTCATTGTATTTCC 58.717 33.333 16.62 2.93 46.81 3.13
587 686 8.003784 GCAGAAAAAGTTTTCATTGTATTTCCG 58.996 33.333 16.62 0.00 46.81 4.30
588 687 9.030301 CAGAAAAAGTTTTCATTGTATTTCCGT 57.970 29.630 16.62 0.00 46.81 4.69
592 691 9.458374 AAAAGTTTTCATTGTATTTCCGTACTG 57.542 29.630 0.00 0.00 0.00 2.74
593 692 7.739498 AGTTTTCATTGTATTTCCGTACTGT 57.261 32.000 0.00 0.00 0.00 3.55
594 693 7.581476 AGTTTTCATTGTATTTCCGTACTGTG 58.419 34.615 0.00 0.00 0.00 3.66
647 748 0.112606 TCTCTCGTTGTCTCCCACCT 59.887 55.000 0.00 0.00 0.00 4.00
723 824 1.085091 CTGGTAGAAAGCAGCAGCAG 58.915 55.000 3.17 0.00 43.73 4.24
724 825 0.957395 TGGTAGAAAGCAGCAGCAGC 60.957 55.000 3.17 0.46 45.49 5.25
725 826 0.957395 GGTAGAAAGCAGCAGCAGCA 60.957 55.000 12.92 0.00 45.49 4.41
726 827 1.093159 GTAGAAAGCAGCAGCAGCAT 58.907 50.000 12.92 0.00 45.49 3.79
727 828 1.092348 TAGAAAGCAGCAGCAGCATG 58.908 50.000 12.92 0.00 45.49 4.06
769 871 2.122189 CATCCTCCCTCCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
789 891 2.881266 CGACACGCCACACAACCAG 61.881 63.158 0.00 0.00 0.00 4.00
794 896 2.253758 CGCCACACAACCAGACCAG 61.254 63.158 0.00 0.00 0.00 4.00
801 903 1.676006 CACAACCAGACCAGACCAAAC 59.324 52.381 0.00 0.00 0.00 2.93
802 904 1.318576 CAACCAGACCAGACCAAACC 58.681 55.000 0.00 0.00 0.00 3.27
803 905 0.923358 AACCAGACCAGACCAAACCA 59.077 50.000 0.00 0.00 0.00 3.67
804 906 0.923358 ACCAGACCAGACCAAACCAA 59.077 50.000 0.00 0.00 0.00 3.67
805 907 1.286553 ACCAGACCAGACCAAACCAAA 59.713 47.619 0.00 0.00 0.00 3.28
806 908 1.681264 CCAGACCAGACCAAACCAAAC 59.319 52.381 0.00 0.00 0.00 2.93
807 909 1.681264 CAGACCAGACCAAACCAAACC 59.319 52.381 0.00 0.00 0.00 3.27
808 910 1.286553 AGACCAGACCAAACCAAACCA 59.713 47.619 0.00 0.00 0.00 3.67
809 911 1.681264 GACCAGACCAAACCAAACCAG 59.319 52.381 0.00 0.00 0.00 4.00
810 912 1.286553 ACCAGACCAAACCAAACCAGA 59.713 47.619 0.00 0.00 0.00 3.86
824 926 1.743252 CCAGACCGAAAGCAGAGCC 60.743 63.158 0.00 0.00 0.00 4.70
926 1028 0.721718 CTCTCACGTTGCGGAATTCC 59.278 55.000 15.01 15.01 0.00 3.01
1116 1227 4.530857 CGGATGACGGGGGTGCTC 62.531 72.222 0.00 0.00 39.42 4.26
1195 1306 3.083997 CCTTCTGGCGCTACCCCT 61.084 66.667 7.64 0.00 37.83 4.79
1364 1475 2.522193 CCCTCCTCCGTAGCCTCC 60.522 72.222 0.00 0.00 0.00 4.30
1376 1487 1.628846 GTAGCCTCCAGTTTCCCTCAA 59.371 52.381 0.00 0.00 0.00 3.02
1377 1488 0.402121 AGCCTCCAGTTTCCCTCAAC 59.598 55.000 0.00 0.00 0.00 3.18
1378 1489 0.110486 GCCTCCAGTTTCCCTCAACA 59.890 55.000 0.00 0.00 0.00 3.33
1379 1490 1.272147 GCCTCCAGTTTCCCTCAACAT 60.272 52.381 0.00 0.00 0.00 2.71
1380 1491 2.716217 CCTCCAGTTTCCCTCAACATC 58.284 52.381 0.00 0.00 0.00 3.06
1381 1492 2.040278 CCTCCAGTTTCCCTCAACATCA 59.960 50.000 0.00 0.00 0.00 3.07
1382 1493 3.308688 CCTCCAGTTTCCCTCAACATCAT 60.309 47.826 0.00 0.00 0.00 2.45
1384 1495 3.074390 TCCAGTTTCCCTCAACATCATGT 59.926 43.478 0.00 0.00 0.00 3.21
1385 1496 3.192001 CCAGTTTCCCTCAACATCATGTG 59.808 47.826 0.00 0.00 0.00 3.21
1386 1497 3.192001 CAGTTTCCCTCAACATCATGTGG 59.808 47.826 0.00 0.00 34.48 4.17
1389 1500 2.220653 CCCTCAACATCATGTGGGTT 57.779 50.000 3.80 0.00 45.15 4.11
1426 1542 3.853330 CGACCTGCGCAACCGATG 61.853 66.667 13.05 0.00 36.29 3.84
1456 1572 4.682787 TCATCTTCTGCGTTCGTCAATAT 58.317 39.130 0.00 0.00 0.00 1.28
1457 1573 4.740205 TCATCTTCTGCGTTCGTCAATATC 59.260 41.667 0.00 0.00 0.00 1.63
1458 1574 4.371855 TCTTCTGCGTTCGTCAATATCT 57.628 40.909 0.00 0.00 0.00 1.98
1459 1575 4.352039 TCTTCTGCGTTCGTCAATATCTC 58.648 43.478 0.00 0.00 0.00 2.75
1460 1576 2.716398 TCTGCGTTCGTCAATATCTCG 58.284 47.619 0.00 0.00 0.00 4.04
1461 1577 1.188138 CTGCGTTCGTCAATATCTCGC 59.812 52.381 0.00 0.00 41.98 5.03
1462 1578 1.197055 GCGTTCGTCAATATCTCGCA 58.803 50.000 0.00 0.00 41.42 5.10
1465 1581 2.464865 GTTCGTCAATATCTCGCAGCT 58.535 47.619 0.00 0.00 0.00 4.24
1470 1593 1.615883 TCAATATCTCGCAGCTCCTCC 59.384 52.381 0.00 0.00 0.00 4.30
1488 1611 2.435059 GCACAGCCTCCTTCCGAC 60.435 66.667 0.00 0.00 0.00 4.79
1493 1616 1.002274 AGCCTCCTTCCGACTGGAT 59.998 57.895 0.00 0.00 45.91 3.41
1509 1632 0.671472 GGATTTTGGCAGGCTGTTGC 60.671 55.000 17.16 1.99 43.34 4.17
1556 1679 2.727123 TCTGGAGTTGTTTTCTGGCA 57.273 45.000 0.00 0.00 0.00 4.92
1557 1680 3.228188 TCTGGAGTTGTTTTCTGGCAT 57.772 42.857 0.00 0.00 0.00 4.40
1560 1683 3.295093 TGGAGTTGTTTTCTGGCATCAA 58.705 40.909 0.00 0.00 0.00 2.57
1572 1695 3.159446 GCATCAACGCATGCTGATC 57.841 52.632 17.09 10.13 45.03 2.92
1602 1725 3.711704 AGGAGGATTTAATCGGAGCTTCA 59.288 43.478 0.00 0.00 0.00 3.02
1639 1762 1.471287 GTCAGCCAACCGGGAATAAAC 59.529 52.381 6.32 0.00 40.01 2.01
1667 1791 0.879090 AGGTGGCGTTCGGAATTTTC 59.121 50.000 0.00 0.00 0.00 2.29
1680 1804 3.428045 CGGAATTTTCTGATTGACCTGGC 60.428 47.826 0.00 0.00 35.56 4.85
1688 1812 1.833630 TGATTGACCTGGCGAAGATCT 59.166 47.619 0.00 0.00 0.00 2.75
1690 1814 0.976641 TTGACCTGGCGAAGATCTGT 59.023 50.000 0.00 0.00 0.00 3.41
1692 1816 1.347707 TGACCTGGCGAAGATCTGTTT 59.652 47.619 0.00 0.00 0.00 2.83
1693 1817 2.003301 GACCTGGCGAAGATCTGTTTC 58.997 52.381 0.00 0.00 0.00 2.78
1694 1818 1.625818 ACCTGGCGAAGATCTGTTTCT 59.374 47.619 0.00 0.00 0.00 2.52
1695 1819 2.275318 CCTGGCGAAGATCTGTTTCTC 58.725 52.381 0.00 0.00 0.00 2.87
1696 1820 2.093764 CCTGGCGAAGATCTGTTTCTCT 60.094 50.000 0.00 0.00 0.00 3.10
1697 1821 2.928757 CTGGCGAAGATCTGTTTCTCTG 59.071 50.000 0.00 0.00 0.00 3.35
1698 1822 2.300152 TGGCGAAGATCTGTTTCTCTGT 59.700 45.455 0.00 0.00 0.00 3.41
1700 1824 3.748568 GGCGAAGATCTGTTTCTCTGTTT 59.251 43.478 0.00 0.00 0.00 2.83
1701 1825 4.143009 GGCGAAGATCTGTTTCTCTGTTTC 60.143 45.833 0.00 0.00 0.00 2.78
1702 1826 4.449068 GCGAAGATCTGTTTCTCTGTTTCA 59.551 41.667 0.00 0.00 0.00 2.69
1704 1828 6.671879 GCGAAGATCTGTTTCTCTGTTTCATC 60.672 42.308 0.00 0.00 0.00 2.92
1705 1829 6.367149 CGAAGATCTGTTTCTCTGTTTCATCA 59.633 38.462 0.00 0.00 0.00 3.07
1706 1830 7.432350 AAGATCTGTTTCTCTGTTTCATCAC 57.568 36.000 0.00 0.00 0.00 3.06
1707 1831 6.767456 AGATCTGTTTCTCTGTTTCATCACT 58.233 36.000 0.00 0.00 0.00 3.41
1708 1832 6.873076 AGATCTGTTTCTCTGTTTCATCACTC 59.127 38.462 0.00 0.00 0.00 3.51
1709 1833 5.300752 TCTGTTTCTCTGTTTCATCACTCC 58.699 41.667 0.00 0.00 0.00 3.85
1710 1834 5.070981 TCTGTTTCTCTGTTTCATCACTCCT 59.929 40.000 0.00 0.00 0.00 3.69
1711 1835 5.300752 TGTTTCTCTGTTTCATCACTCCTC 58.699 41.667 0.00 0.00 0.00 3.71
1712 1836 5.070981 TGTTTCTCTGTTTCATCACTCCTCT 59.929 40.000 0.00 0.00 0.00 3.69
1713 1837 4.797800 TCTCTGTTTCATCACTCCTCTG 57.202 45.455 0.00 0.00 0.00 3.35
1714 1838 3.056250 TCTCTGTTTCATCACTCCTCTGC 60.056 47.826 0.00 0.00 0.00 4.26
1715 1839 2.902486 TCTGTTTCATCACTCCTCTGCT 59.098 45.455 0.00 0.00 0.00 4.24
1716 1840 3.001414 CTGTTTCATCACTCCTCTGCTG 58.999 50.000 0.00 0.00 0.00 4.41
1717 1841 2.634453 TGTTTCATCACTCCTCTGCTGA 59.366 45.455 0.00 0.00 0.00 4.26
1718 1842 3.071457 TGTTTCATCACTCCTCTGCTGAA 59.929 43.478 0.00 0.00 0.00 3.02
1719 1843 4.260170 GTTTCATCACTCCTCTGCTGAAT 58.740 43.478 0.00 0.00 0.00 2.57
1720 1844 5.046376 TGTTTCATCACTCCTCTGCTGAATA 60.046 40.000 0.00 0.00 0.00 1.75
1721 1845 5.883685 TTCATCACTCCTCTGCTGAATAT 57.116 39.130 0.00 0.00 0.00 1.28
1848 1972 1.881591 TTCCGGGGTAGAAACAAACG 58.118 50.000 0.00 0.00 0.00 3.60
1909 2035 7.818446 GGGTTATAATTAATCCGGAGAGAAGAC 59.182 40.741 11.34 0.30 29.02 3.01
2001 2127 4.278669 TGCTGACGATTTCTCCTATCCTAC 59.721 45.833 0.00 0.00 0.00 3.18
2042 2169 2.238245 GCTTTCAGCAATGTCAGTCG 57.762 50.000 0.00 0.00 41.89 4.18
2143 2278 4.048504 GTCCATTTGGTGCTGTGTTTTAC 58.951 43.478 0.00 0.00 36.34 2.01
2144 2279 3.957497 TCCATTTGGTGCTGTGTTTTACT 59.043 39.130 0.00 0.00 36.34 2.24
2145 2280 5.009210 GTCCATTTGGTGCTGTGTTTTACTA 59.991 40.000 0.00 0.00 36.34 1.82
2146 2281 5.009210 TCCATTTGGTGCTGTGTTTTACTAC 59.991 40.000 0.00 0.00 36.34 2.73
2586 2811 5.766702 TTATAACAACTCGAACGCGATTT 57.233 34.783 15.93 0.00 46.80 2.17
2748 2975 2.772287 CATCGCTCCCTATCCTTTTCC 58.228 52.381 0.00 0.00 0.00 3.13
2757 2984 6.694086 GCTCCCTATCCTTTTCCCATAATCAA 60.694 42.308 0.00 0.00 0.00 2.57
3126 3354 4.094887 AGCTTTGTGAACTGTTGTACACTG 59.905 41.667 0.00 0.00 34.81 3.66
3156 3384 6.763610 GGGAGACAATTGGAGTTATAACAGAG 59.236 42.308 17.65 3.21 0.00 3.35
3260 3492 6.592994 ACATAAACCTAACTACGCTCCTTTTC 59.407 38.462 0.00 0.00 0.00 2.29
3280 3512 3.399330 TCTCGATCTTGTTTTCCGCTTT 58.601 40.909 0.00 0.00 0.00 3.51
3537 3777 5.479124 TCTTCAAGGTAAGTCTGGGTTAC 57.521 43.478 0.00 0.00 0.00 2.50
3542 3782 1.274447 GGTAAGTCTGGGTTACACGCT 59.726 52.381 0.00 0.00 32.85 5.07
3580 3820 3.372822 TGAAATGCCGGTCGTTTATTCTC 59.627 43.478 13.68 4.94 34.23 2.87
3582 3822 0.108041 TGCCGGTCGTTTATTCTCCC 60.108 55.000 1.90 0.00 0.00 4.30
3603 3843 3.956199 CCAATCATCACCTTACTGCCAAT 59.044 43.478 0.00 0.00 0.00 3.16
3715 3955 8.270030 TGATGTCCAGTCATCTTTTTCTCATAT 58.730 33.333 6.47 0.00 43.03 1.78
3810 4050 4.553330 TCTTCTCCGCCTTTGAAACTAT 57.447 40.909 0.00 0.00 0.00 2.12
3811 4051 4.906618 TCTTCTCCGCCTTTGAAACTATT 58.093 39.130 0.00 0.00 0.00 1.73
3812 4052 6.045072 TCTTCTCCGCCTTTGAAACTATTA 57.955 37.500 0.00 0.00 0.00 0.98
3875 4115 2.869233 CAAGAACTTGTTGGTGGTGG 57.131 50.000 6.41 0.00 35.92 4.61
3883 4123 1.275421 TGTTGGTGGTGGTGTCCTGA 61.275 55.000 0.00 0.00 0.00 3.86
3887 4127 0.182775 GGTGGTGGTGTCCTGAACTT 59.817 55.000 0.00 0.00 0.00 2.66
3902 4142 5.104402 TCCTGAACTTCTGATGCATATGGAA 60.104 40.000 0.00 3.82 0.00 3.53
3903 4143 5.008415 CCTGAACTTCTGATGCATATGGAAC 59.992 44.000 0.00 0.00 0.00 3.62
3926 4166 2.241176 TCTGTGGTTATTGATGTCCCCC 59.759 50.000 0.00 0.00 0.00 5.40
3932 4172 4.264577 TGGTTATTGATGTCCCCCATGAAA 60.265 41.667 0.00 0.00 30.21 2.69
3940 4180 1.139498 TCCCCCATGAAACCTGCTCA 61.139 55.000 0.00 0.00 0.00 4.26
3960 4200 6.316140 TGCTCAGAATGCAGACGTAAATATTT 59.684 34.615 5.89 5.89 35.31 1.40
4082 4323 3.386402 TGGGTTTTTGTTTGATCTGGACC 59.614 43.478 0.00 0.00 0.00 4.46
4103 4344 1.629861 TGCTGAATCACATGTCAGGGA 59.370 47.619 12.65 0.77 41.36 4.20
4270 4511 2.172483 AACGCGATGGAGAAGCTGGT 62.172 55.000 15.93 0.00 0.00 4.00
4378 4619 1.275666 TCGATGACCCTTGACCATGT 58.724 50.000 0.00 0.00 0.00 3.21
4379 4620 2.462723 TCGATGACCCTTGACCATGTA 58.537 47.619 0.00 0.00 0.00 2.29
4380 4621 3.038280 TCGATGACCCTTGACCATGTAT 58.962 45.455 0.00 0.00 0.00 2.29
4381 4622 3.133691 CGATGACCCTTGACCATGTATG 58.866 50.000 0.00 0.00 0.00 2.39
4437 4678 3.092301 AGACACTGATGATCTGACGGAA 58.908 45.455 6.32 0.00 0.00 4.30
4454 4695 0.799393 GAAGAACGGAAGAAGCCAGC 59.201 55.000 0.00 0.00 0.00 4.85
4510 4752 2.046314 GACATGACACCGTGGGGG 60.046 66.667 0.00 0.00 43.62 5.40
4552 4794 1.297451 GTCGTCGTCGCTTATCGCT 60.297 57.895 0.00 0.00 38.27 4.93
4607 4849 1.380785 ATGGCTGGAATGTGCTGGG 60.381 57.895 0.00 0.00 0.00 4.45
4687 4929 3.181491 CCTGTTGTTGTTGGGTAGTGTTG 60.181 47.826 0.00 0.00 0.00 3.33
4696 4938 0.608308 GGGTAGTGTTGAGTTGGGGC 60.608 60.000 0.00 0.00 0.00 5.80
4697 4939 0.400594 GGTAGTGTTGAGTTGGGGCT 59.599 55.000 0.00 0.00 0.00 5.19
4753 4996 8.717821 GTGTATTAGTTGATGTGCAAAGAAGTA 58.282 33.333 0.00 0.00 38.44 2.24
4755 4998 9.922305 GTATTAGTTGATGTGCAAAGAAGTATC 57.078 33.333 0.00 0.00 38.44 2.24
4779 5022 5.773680 CCCATCTCTCCTAATTGATTGCAAT 59.226 40.000 12.83 12.83 46.35 3.56
4822 5065 1.086696 CGTGGCATTTAGGTGTCTGG 58.913 55.000 0.00 0.00 0.00 3.86
4823 5066 1.463674 GTGGCATTTAGGTGTCTGGG 58.536 55.000 0.00 0.00 0.00 4.45
4825 5068 1.427368 TGGCATTTAGGTGTCTGGGTT 59.573 47.619 0.00 0.00 0.00 4.11
4826 5069 2.092323 GGCATTTAGGTGTCTGGGTTC 58.908 52.381 0.00 0.00 0.00 3.62
4827 5070 2.554344 GGCATTTAGGTGTCTGGGTTCA 60.554 50.000 0.00 0.00 0.00 3.18
4835 5089 2.639065 GTGTCTGGGTTCACAGTTTCA 58.361 47.619 1.92 0.00 39.48 2.69
4836 5090 2.614057 GTGTCTGGGTTCACAGTTTCAG 59.386 50.000 1.92 0.00 39.48 3.02
4864 5118 0.395586 TTGTCTGGGTTGCTGTGCTT 60.396 50.000 0.00 0.00 0.00 3.91
4866 5120 0.875059 GTCTGGGTTGCTGTGCTTAC 59.125 55.000 0.00 0.00 0.00 2.34
4892 5146 0.746204 GCAGAGCTAAACAGGAGGCC 60.746 60.000 0.00 0.00 0.00 5.19
4894 5148 1.153349 GAGCTAAACAGGAGGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
4896 5150 2.124695 CTAAACAGGAGGCCGGGC 60.125 66.667 22.67 22.67 0.00 6.13
4951 5249 7.619965 TCTTGGTCTACAACAATGTGATATGA 58.380 34.615 0.00 0.00 40.84 2.15
4973 5271 6.817184 TGACATAATTAACTACTCCCTCTGC 58.183 40.000 0.00 0.00 0.00 4.26
4974 5272 6.176014 ACATAATTAACTACTCCCTCTGCC 57.824 41.667 0.00 0.00 0.00 4.85
4975 5273 5.071923 ACATAATTAACTACTCCCTCTGCCC 59.928 44.000 0.00 0.00 0.00 5.36
4976 5274 1.875488 TTAACTACTCCCTCTGCCCC 58.125 55.000 0.00 0.00 0.00 5.80
4977 5275 0.714180 TAACTACTCCCTCTGCCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4978 5276 0.044855 AACTACTCCCTCTGCCCCAT 59.955 55.000 0.00 0.00 0.00 4.00
4979 5277 0.941963 ACTACTCCCTCTGCCCCATA 59.058 55.000 0.00 0.00 0.00 2.74
4980 5278 1.294068 ACTACTCCCTCTGCCCCATAA 59.706 52.381 0.00 0.00 0.00 1.90
4981 5279 2.089925 ACTACTCCCTCTGCCCCATAAT 60.090 50.000 0.00 0.00 0.00 1.28
4982 5280 2.815357 ACTCCCTCTGCCCCATAATA 57.185 50.000 0.00 0.00 0.00 0.98
4983 5281 3.297994 ACTCCCTCTGCCCCATAATAT 57.702 47.619 0.00 0.00 0.00 1.28
4984 5282 4.435977 ACTCCCTCTGCCCCATAATATA 57.564 45.455 0.00 0.00 0.00 0.86
4985 5283 4.774779 ACTCCCTCTGCCCCATAATATAA 58.225 43.478 0.00 0.00 0.00 0.98
4986 5284 4.785376 ACTCCCTCTGCCCCATAATATAAG 59.215 45.833 0.00 0.00 0.00 1.73
4987 5285 5.032846 CTCCCTCTGCCCCATAATATAAGA 58.967 45.833 0.00 0.00 0.00 2.10
4988 5286 5.613826 TCCCTCTGCCCCATAATATAAGAT 58.386 41.667 0.00 0.00 0.00 2.40
4989 5287 5.667626 TCCCTCTGCCCCATAATATAAGATC 59.332 44.000 0.00 0.00 0.00 2.75
4990 5288 5.453903 CCCTCTGCCCCATAATATAAGATCG 60.454 48.000 0.00 0.00 0.00 3.69
4991 5289 5.129485 CCTCTGCCCCATAATATAAGATCGT 59.871 44.000 0.00 0.00 0.00 3.73
4992 5290 6.222038 TCTGCCCCATAATATAAGATCGTC 57.778 41.667 0.00 0.00 0.00 4.20
4993 5291 5.958380 TCTGCCCCATAATATAAGATCGTCT 59.042 40.000 0.00 0.00 0.00 4.18
5027 5325 2.997485 CTTGGTCAGTAAAGCAAGGC 57.003 50.000 7.71 0.00 46.17 4.35
5032 5330 2.628178 GGTCAGTAAAGCAAGGCCTTTT 59.372 45.455 17.61 10.92 36.50 2.27
5052 5424 0.661020 GGCCGAACCATGGTAAATCG 59.339 55.000 24.36 24.36 38.86 3.34
5062 5434 4.515944 ACCATGGTAAATCGAACGTTTTCA 59.484 37.500 18.10 0.00 0.00 2.69
5063 5435 5.086058 CCATGGTAAATCGAACGTTTTCAG 58.914 41.667 2.57 0.00 0.00 3.02
5080 5452 6.580476 GTTTTCAGTGGCAATTTTAATGACG 58.420 36.000 0.00 0.00 0.00 4.35
5085 5457 2.159448 TGGCAATTTTAATGACGCGAGG 60.159 45.455 15.93 0.00 0.00 4.63
5090 5462 1.948104 TTTAATGACGCGAGGATGGG 58.052 50.000 15.93 0.00 0.00 4.00
5098 5470 1.134788 ACGCGAGGATGGGAAGTTTAG 60.135 52.381 15.93 0.00 0.00 1.85
5105 5477 4.652822 AGGATGGGAAGTTTAGTTGACAC 58.347 43.478 0.00 0.00 0.00 3.67
5106 5478 3.435671 GGATGGGAAGTTTAGTTGACACG 59.564 47.826 0.00 0.00 0.00 4.49
5107 5479 2.215196 TGGGAAGTTTAGTTGACACGC 58.785 47.619 0.00 0.00 0.00 5.34
5108 5480 2.215196 GGGAAGTTTAGTTGACACGCA 58.785 47.619 0.00 0.00 0.00 5.24
5109 5481 2.032290 GGGAAGTTTAGTTGACACGCAC 60.032 50.000 0.00 0.00 0.00 5.34
5114 5545 1.218875 TTAGTTGACACGCACGCCTG 61.219 55.000 0.00 0.00 0.00 4.85
5131 5562 1.067635 CCTGGCGTTGCTAAAATTGCT 60.068 47.619 0.00 0.00 0.00 3.91
5132 5563 1.987770 CTGGCGTTGCTAAAATTGCTG 59.012 47.619 0.00 0.00 0.00 4.41
5134 5565 1.985684 GGCGTTGCTAAAATTGCTGTC 59.014 47.619 0.00 0.00 0.00 3.51
5135 5566 1.643810 GCGTTGCTAAAATTGCTGTCG 59.356 47.619 0.00 0.00 0.00 4.35
5136 5567 2.664424 GCGTTGCTAAAATTGCTGTCGA 60.664 45.455 0.00 0.00 0.00 4.20
5137 5568 3.155998 CGTTGCTAAAATTGCTGTCGAG 58.844 45.455 0.00 0.00 0.00 4.04
5139 5570 4.610456 CGTTGCTAAAATTGCTGTCGAGAA 60.610 41.667 0.00 0.00 0.00 2.87
5141 5572 3.812609 TGCTAAAATTGCTGTCGAGAACA 59.187 39.130 0.00 0.00 36.18 3.18
5144 5575 5.858581 GCTAAAATTGCTGTCGAGAACATTT 59.141 36.000 0.00 0.00 37.23 2.32
5150 5581 4.786507 TGCTGTCGAGAACATTTGATTTG 58.213 39.130 0.00 0.00 37.23 2.32
5151 5582 3.605486 GCTGTCGAGAACATTTGATTTGC 59.395 43.478 0.00 0.00 37.23 3.68
5152 5583 4.159377 TGTCGAGAACATTTGATTTGCC 57.841 40.909 0.00 0.00 31.20 4.52
5153 5584 3.567585 TGTCGAGAACATTTGATTTGCCA 59.432 39.130 0.00 0.00 31.20 4.92
5154 5585 4.218200 TGTCGAGAACATTTGATTTGCCAT 59.782 37.500 0.00 0.00 31.20 4.40
5155 5586 4.560035 GTCGAGAACATTTGATTTGCCATG 59.440 41.667 0.00 0.00 0.00 3.66
5156 5587 3.861113 CGAGAACATTTGATTTGCCATGG 59.139 43.478 7.63 7.63 0.00 3.66
5157 5588 4.618927 CGAGAACATTTGATTTGCCATGGT 60.619 41.667 14.67 0.00 0.00 3.55
5158 5589 4.824289 AGAACATTTGATTTGCCATGGTC 58.176 39.130 14.67 6.41 34.12 4.02
5159 5590 4.283978 AGAACATTTGATTTGCCATGGTCA 59.716 37.500 14.67 9.23 36.04 4.02
5160 5591 4.196626 ACATTTGATTTGCCATGGTCAG 57.803 40.909 14.67 0.29 0.00 3.51
5161 5592 3.833650 ACATTTGATTTGCCATGGTCAGA 59.166 39.130 14.67 7.69 0.00 3.27
5162 5593 4.468510 ACATTTGATTTGCCATGGTCAGAT 59.531 37.500 14.67 12.19 0.00 2.90
5163 5594 5.046159 ACATTTGATTTGCCATGGTCAGATT 60.046 36.000 14.67 1.09 0.00 2.40
5164 5595 4.724074 TTGATTTGCCATGGTCAGATTC 57.276 40.909 14.67 9.90 0.00 2.52
5165 5596 3.025978 TGATTTGCCATGGTCAGATTCC 58.974 45.455 14.67 3.19 0.00 3.01
5166 5597 1.462616 TTTGCCATGGTCAGATTCCG 58.537 50.000 14.67 0.00 0.00 4.30
5167 5598 0.617935 TTGCCATGGTCAGATTCCGA 59.382 50.000 14.67 0.00 0.00 4.55
5168 5599 0.617935 TGCCATGGTCAGATTCCGAA 59.382 50.000 14.67 0.00 0.00 4.30
5169 5600 1.017387 GCCATGGTCAGATTCCGAAC 58.983 55.000 14.67 0.00 0.00 3.95
5170 5601 1.407437 GCCATGGTCAGATTCCGAACT 60.407 52.381 14.67 0.00 0.00 3.01
5171 5602 2.941415 GCCATGGTCAGATTCCGAACTT 60.941 50.000 14.67 0.00 0.00 2.66
5172 5603 3.347216 CCATGGTCAGATTCCGAACTTT 58.653 45.455 2.57 0.00 0.00 2.66
5173 5604 3.375299 CCATGGTCAGATTCCGAACTTTC 59.625 47.826 2.57 0.00 0.00 2.62
5182 5613 4.265282 CGAACTTTCGGGGCGTTA 57.735 55.556 3.35 0.00 46.30 3.18
5183 5614 2.758497 CGAACTTTCGGGGCGTTAT 58.242 52.632 3.35 0.00 46.30 1.89
5184 5615 1.081094 CGAACTTTCGGGGCGTTATT 58.919 50.000 3.35 0.00 46.30 1.40
5185 5616 1.201987 CGAACTTTCGGGGCGTTATTG 60.202 52.381 3.35 0.00 46.30 1.90
5191 5622 2.515290 GGGGCGTTATTGGGGTCG 60.515 66.667 0.00 0.00 0.00 4.79
5192 5623 2.269883 GGGCGTTATTGGGGTCGT 59.730 61.111 0.00 0.00 0.00 4.34
5194 5625 0.107752 GGGCGTTATTGGGGTCGTTA 60.108 55.000 0.00 0.00 0.00 3.18
5205 5636 9.063615 GTTATTGGGGTCGTTATCTTTTATGAT 57.936 33.333 0.00 0.00 0.00 2.45
5206 5637 6.935741 TTGGGGTCGTTATCTTTTATGATG 57.064 37.500 0.00 0.00 0.00 3.07
5272 5703 4.265320 GTGTTTGTTGTTTTACAGCAGAGC 59.735 41.667 0.00 0.00 40.33 4.09
5283 5714 1.627329 ACAGCAGAGCATTCCTTCAGA 59.373 47.619 0.00 0.00 0.00 3.27
5284 5715 2.239150 ACAGCAGAGCATTCCTTCAGAT 59.761 45.455 0.00 0.00 0.00 2.90
5288 5719 3.560896 GCAGAGCATTCCTTCAGATTCTC 59.439 47.826 0.00 0.00 0.00 2.87
5319 5750 6.183360 TGGTCGCAACAAACAAACTAACTATT 60.183 34.615 0.00 0.00 0.00 1.73
5401 5838 3.759618 TGGAGAAAAACAGGTCAAAACGT 59.240 39.130 0.00 0.00 0.00 3.99
5426 5863 6.507900 AGTACATCAATCTGAACTCCGTATG 58.492 40.000 0.00 0.00 0.00 2.39
5427 5864 5.598416 ACATCAATCTGAACTCCGTATGA 57.402 39.130 0.00 0.00 0.00 2.15
5428 5865 5.352284 ACATCAATCTGAACTCCGTATGAC 58.648 41.667 0.00 0.00 0.00 3.06
5429 5866 5.127845 ACATCAATCTGAACTCCGTATGACT 59.872 40.000 0.00 0.00 0.00 3.41
5430 5867 5.250235 TCAATCTGAACTCCGTATGACTC 57.750 43.478 0.00 0.00 0.00 3.36
5431 5868 4.705023 TCAATCTGAACTCCGTATGACTCA 59.295 41.667 0.00 0.00 0.00 3.41
5432 5869 5.185056 TCAATCTGAACTCCGTATGACTCAA 59.815 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.987855 CCTTCTACCCCTGCCGTCA 60.988 63.158 0.00 0.00 0.00 4.35
34 35 1.686110 CTCCTTCTACCCCTGCCGT 60.686 63.158 0.00 0.00 0.00 5.68
100 101 4.212913 GCTCTGCTCGCCGGATCA 62.213 66.667 5.05 0.00 0.00 2.92
125 126 3.068691 CCTCAAGGTCCCGCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
147 148 4.765970 TGGAGCTCCTGCCCCCAT 62.766 66.667 32.28 0.00 36.10 4.00
297 376 1.375908 GCAGGATCTCGCCAACACA 60.376 57.895 0.00 0.00 0.00 3.72
363 442 0.905357 CCTCCACCTCAACGATCCTT 59.095 55.000 0.00 0.00 0.00 3.36
371 467 0.473694 TCAAGCTCCCTCCACCTCAA 60.474 55.000 0.00 0.00 0.00 3.02
487 586 4.853468 TGTATGGCCTCTTTGGTTCATA 57.147 40.909 3.32 0.00 38.35 2.15
488 587 3.737559 TGTATGGCCTCTTTGGTTCAT 57.262 42.857 3.32 0.00 38.35 2.57
489 588 3.517296 TTGTATGGCCTCTTTGGTTCA 57.483 42.857 3.32 0.00 38.35 3.18
490 589 4.947388 TGTATTGTATGGCCTCTTTGGTTC 59.053 41.667 3.32 0.00 38.35 3.62
491 590 4.705023 GTGTATTGTATGGCCTCTTTGGTT 59.295 41.667 3.32 0.00 38.35 3.67
492 591 4.270008 GTGTATTGTATGGCCTCTTTGGT 58.730 43.478 3.32 0.00 38.35 3.67
493 592 3.312421 CGTGTATTGTATGGCCTCTTTGG 59.688 47.826 3.32 0.00 39.35 3.28
494 593 3.938963 ACGTGTATTGTATGGCCTCTTTG 59.061 43.478 3.32 0.00 0.00 2.77
495 594 4.216411 ACGTGTATTGTATGGCCTCTTT 57.784 40.909 3.32 0.00 0.00 2.52
496 595 3.906720 ACGTGTATTGTATGGCCTCTT 57.093 42.857 3.32 0.00 0.00 2.85
497 596 3.906720 AACGTGTATTGTATGGCCTCT 57.093 42.857 3.32 0.00 0.00 3.69
498 597 4.189231 AGAAACGTGTATTGTATGGCCTC 58.811 43.478 3.32 0.00 0.00 4.70
499 598 4.216411 AGAAACGTGTATTGTATGGCCT 57.784 40.909 3.32 0.00 0.00 5.19
500 599 4.957759 AAGAAACGTGTATTGTATGGCC 57.042 40.909 0.00 0.00 0.00 5.36
501 600 8.905103 AATTTAAGAAACGTGTATTGTATGGC 57.095 30.769 0.00 0.00 0.00 4.40
505 604 9.881529 GTCCAAATTTAAGAAACGTGTATTGTA 57.118 29.630 0.00 0.00 0.00 2.41
506 605 7.588488 CGTCCAAATTTAAGAAACGTGTATTGT 59.412 33.333 0.00 0.00 0.00 2.71
507 606 7.799447 TCGTCCAAATTTAAGAAACGTGTATTG 59.201 33.333 0.00 0.00 0.00 1.90
508 607 7.863666 TCGTCCAAATTTAAGAAACGTGTATT 58.136 30.769 0.00 0.00 0.00 1.89
509 608 7.385752 TCTCGTCCAAATTTAAGAAACGTGTAT 59.614 33.333 0.00 0.00 0.00 2.29
510 609 6.700960 TCTCGTCCAAATTTAAGAAACGTGTA 59.299 34.615 0.00 0.00 0.00 2.90
511 610 5.524646 TCTCGTCCAAATTTAAGAAACGTGT 59.475 36.000 0.00 0.00 0.00 4.49
512 611 5.981174 TCTCGTCCAAATTTAAGAAACGTG 58.019 37.500 0.00 0.00 0.00 4.49
513 612 5.987347 TCTCTCGTCCAAATTTAAGAAACGT 59.013 36.000 0.00 0.00 0.00 3.99
514 613 6.462073 TCTCTCGTCCAAATTTAAGAAACG 57.538 37.500 0.00 0.00 0.00 3.60
515 614 9.331106 GATTTCTCTCGTCCAAATTTAAGAAAC 57.669 33.333 0.00 0.00 35.16 2.78
516 615 9.062524 TGATTTCTCTCGTCCAAATTTAAGAAA 57.937 29.630 0.00 0.00 36.34 2.52
517 616 8.504005 GTGATTTCTCTCGTCCAAATTTAAGAA 58.496 33.333 0.00 0.00 0.00 2.52
518 617 7.659799 TGTGATTTCTCTCGTCCAAATTTAAGA 59.340 33.333 0.00 0.00 0.00 2.10
519 618 7.806690 TGTGATTTCTCTCGTCCAAATTTAAG 58.193 34.615 0.00 0.00 0.00 1.85
520 619 7.737972 TGTGATTTCTCTCGTCCAAATTTAA 57.262 32.000 0.00 0.00 0.00 1.52
521 620 7.737972 TTGTGATTTCTCTCGTCCAAATTTA 57.262 32.000 0.00 0.00 0.00 1.40
522 621 6.633500 TTGTGATTTCTCTCGTCCAAATTT 57.367 33.333 0.00 0.00 0.00 1.82
523 622 6.039270 TGTTTGTGATTTCTCTCGTCCAAATT 59.961 34.615 0.00 0.00 0.00 1.82
524 623 5.530915 TGTTTGTGATTTCTCTCGTCCAAAT 59.469 36.000 0.00 0.00 0.00 2.32
525 624 4.878971 TGTTTGTGATTTCTCTCGTCCAAA 59.121 37.500 0.00 0.00 0.00 3.28
526 625 4.447290 TGTTTGTGATTTCTCTCGTCCAA 58.553 39.130 0.00 0.00 0.00 3.53
527 626 4.066646 TGTTTGTGATTTCTCTCGTCCA 57.933 40.909 0.00 0.00 0.00 4.02
528 627 5.613358 AATGTTTGTGATTTCTCTCGTCC 57.387 39.130 0.00 0.00 0.00 4.79
529 628 6.892691 AGAAATGTTTGTGATTTCTCTCGTC 58.107 36.000 0.00 0.00 43.58 4.20
530 629 6.867662 AGAAATGTTTGTGATTTCTCTCGT 57.132 33.333 0.00 0.00 43.58 4.18
536 635 6.074356 CCGGTTTGAGAAATGTTTGTGATTTC 60.074 38.462 0.00 0.00 39.25 2.17
537 636 5.752955 CCGGTTTGAGAAATGTTTGTGATTT 59.247 36.000 0.00 0.00 0.00 2.17
538 637 5.288804 CCGGTTTGAGAAATGTTTGTGATT 58.711 37.500 0.00 0.00 0.00 2.57
539 638 4.795962 GCCGGTTTGAGAAATGTTTGTGAT 60.796 41.667 1.90 0.00 0.00 3.06
540 639 3.490078 GCCGGTTTGAGAAATGTTTGTGA 60.490 43.478 1.90 0.00 0.00 3.58
541 640 2.794350 GCCGGTTTGAGAAATGTTTGTG 59.206 45.455 1.90 0.00 0.00 3.33
542 641 2.428890 TGCCGGTTTGAGAAATGTTTGT 59.571 40.909 1.90 0.00 0.00 2.83
543 642 3.052036 CTGCCGGTTTGAGAAATGTTTG 58.948 45.455 1.90 0.00 0.00 2.93
544 643 2.955660 TCTGCCGGTTTGAGAAATGTTT 59.044 40.909 1.90 0.00 0.00 2.83
545 644 2.582052 TCTGCCGGTTTGAGAAATGTT 58.418 42.857 1.90 0.00 0.00 2.71
546 645 2.270352 TCTGCCGGTTTGAGAAATGT 57.730 45.000 1.90 0.00 0.00 2.71
547 646 3.641437 TTTCTGCCGGTTTGAGAAATG 57.359 42.857 1.90 0.00 32.13 2.32
548 647 4.099419 ACTTTTTCTGCCGGTTTGAGAAAT 59.901 37.500 15.97 4.55 36.01 2.17
549 648 3.445805 ACTTTTTCTGCCGGTTTGAGAAA 59.554 39.130 1.90 9.41 34.63 2.52
550 649 3.020984 ACTTTTTCTGCCGGTTTGAGAA 58.979 40.909 1.90 3.26 0.00 2.87
551 650 2.650322 ACTTTTTCTGCCGGTTTGAGA 58.350 42.857 1.90 0.00 0.00 3.27
552 651 3.436700 AACTTTTTCTGCCGGTTTGAG 57.563 42.857 1.90 0.00 0.00 3.02
553 652 3.878160 AAACTTTTTCTGCCGGTTTGA 57.122 38.095 1.90 0.00 0.00 2.69
554 653 3.929610 TGAAAACTTTTTCTGCCGGTTTG 59.070 39.130 14.05 0.00 45.14 2.93
555 654 4.195225 TGAAAACTTTTTCTGCCGGTTT 57.805 36.364 14.05 0.00 45.14 3.27
556 655 3.878160 TGAAAACTTTTTCTGCCGGTT 57.122 38.095 14.05 0.00 45.14 4.44
557 656 4.119136 CAATGAAAACTTTTTCTGCCGGT 58.881 39.130 14.05 0.00 45.14 5.28
558 657 4.119136 ACAATGAAAACTTTTTCTGCCGG 58.881 39.130 14.05 0.00 45.14 6.13
559 658 7.406799 AATACAATGAAAACTTTTTCTGCCG 57.593 32.000 14.05 4.78 45.14 5.69
560 659 8.282592 GGAAATACAATGAAAACTTTTTCTGCC 58.717 33.333 14.05 0.00 45.14 4.85
561 660 8.003784 CGGAAATACAATGAAAACTTTTTCTGC 58.996 33.333 14.05 0.00 45.14 4.26
562 661 9.030301 ACGGAAATACAATGAAAACTTTTTCTG 57.970 29.630 14.05 8.47 45.14 3.02
566 665 9.458374 CAGTACGGAAATACAATGAAAACTTTT 57.542 29.630 0.00 0.00 0.00 2.27
567 666 8.626526 ACAGTACGGAAATACAATGAAAACTTT 58.373 29.630 0.00 0.00 0.00 2.66
568 667 8.073768 CACAGTACGGAAATACAATGAAAACTT 58.926 33.333 0.00 0.00 0.00 2.66
569 668 7.227910 ACACAGTACGGAAATACAATGAAAACT 59.772 33.333 0.00 0.00 0.00 2.66
570 669 7.357303 ACACAGTACGGAAATACAATGAAAAC 58.643 34.615 0.00 0.00 0.00 2.43
571 670 7.499321 ACACAGTACGGAAATACAATGAAAA 57.501 32.000 0.00 0.00 0.00 2.29
572 671 7.148771 CGTACACAGTACGGAAATACAATGAAA 60.149 37.037 18.88 0.00 37.29 2.69
573 672 6.308524 CGTACACAGTACGGAAATACAATGAA 59.691 38.462 18.88 0.00 37.29 2.57
574 673 5.801444 CGTACACAGTACGGAAATACAATGA 59.199 40.000 18.88 0.00 37.29 2.57
575 674 5.574055 ACGTACACAGTACGGAAATACAATG 59.426 40.000 26.88 2.83 44.38 2.82
576 675 5.713025 ACGTACACAGTACGGAAATACAAT 58.287 37.500 26.88 6.33 44.38 2.71
577 676 5.119931 ACGTACACAGTACGGAAATACAA 57.880 39.130 26.88 0.00 44.38 2.41
578 677 4.668941 CGACGTACACAGTACGGAAATACA 60.669 45.833 26.88 0.00 44.38 2.29
579 678 3.780801 CGACGTACACAGTACGGAAATAC 59.219 47.826 26.88 13.30 44.38 1.89
580 679 3.682377 TCGACGTACACAGTACGGAAATA 59.318 43.478 26.88 10.16 44.38 1.40
581 680 2.483877 TCGACGTACACAGTACGGAAAT 59.516 45.455 26.88 11.26 44.38 2.17
582 681 1.870402 TCGACGTACACAGTACGGAAA 59.130 47.619 26.88 12.98 44.38 3.13
583 682 1.194547 GTCGACGTACACAGTACGGAA 59.805 52.381 26.88 13.26 44.38 4.30
584 683 0.790207 GTCGACGTACACAGTACGGA 59.210 55.000 26.88 16.08 44.38 4.69
585 684 0.792640 AGTCGACGTACACAGTACGG 59.207 55.000 26.88 14.40 44.38 4.02
586 685 1.201855 GGAGTCGACGTACACAGTACG 60.202 57.143 23.33 23.33 45.44 3.67
587 686 1.129437 GGGAGTCGACGTACACAGTAC 59.871 57.143 10.46 0.00 0.00 2.73
588 687 1.442769 GGGAGTCGACGTACACAGTA 58.557 55.000 10.46 0.00 0.00 2.74
589 688 1.572085 CGGGAGTCGACGTACACAGT 61.572 60.000 10.46 0.00 42.43 3.55
590 689 1.134075 CGGGAGTCGACGTACACAG 59.866 63.158 10.46 0.96 42.43 3.66
591 690 0.320334 TACGGGAGTCGACGTACACA 60.320 55.000 10.46 0.00 45.66 3.72
592 691 2.456000 TACGGGAGTCGACGTACAC 58.544 57.895 10.46 6.28 45.66 2.90
647 748 1.748493 GTAAATGCGGGGAGAAATGCA 59.252 47.619 0.00 0.00 42.22 3.96
706 807 0.957395 TGCTGCTGCTGCTTTCTACC 60.957 55.000 27.67 1.98 40.48 3.18
723 824 0.391528 GTTGGGTTTGGATGCCATGC 60.392 55.000 0.00 0.00 31.53 4.06
724 825 0.249955 GGTTGGGTTTGGATGCCATG 59.750 55.000 0.00 0.00 31.53 3.66
725 826 0.116940 AGGTTGGGTTTGGATGCCAT 59.883 50.000 0.00 0.00 31.53 4.40
726 827 0.105246 AAGGTTGGGTTTGGATGCCA 60.105 50.000 0.00 0.00 0.00 4.92
727 828 0.608130 GAAGGTTGGGTTTGGATGCC 59.392 55.000 0.00 0.00 0.00 4.40
769 871 2.594962 GGTTGTGTGGCGTGTCGAG 61.595 63.158 0.00 0.00 0.00 4.04
789 891 1.681264 CTGGTTTGGTTTGGTCTGGTC 59.319 52.381 0.00 0.00 0.00 4.02
794 896 0.666374 CGGTCTGGTTTGGTTTGGTC 59.334 55.000 0.00 0.00 0.00 4.02
801 903 0.593128 CTGCTTTCGGTCTGGTTTGG 59.407 55.000 0.00 0.00 0.00 3.28
802 904 1.532868 CTCTGCTTTCGGTCTGGTTTG 59.467 52.381 0.00 0.00 0.00 2.93
803 905 1.884235 CTCTGCTTTCGGTCTGGTTT 58.116 50.000 0.00 0.00 0.00 3.27
804 906 0.603975 GCTCTGCTTTCGGTCTGGTT 60.604 55.000 0.00 0.00 0.00 3.67
805 907 1.004440 GCTCTGCTTTCGGTCTGGT 60.004 57.895 0.00 0.00 0.00 4.00
806 908 1.743252 GGCTCTGCTTTCGGTCTGG 60.743 63.158 0.00 0.00 0.00 3.86
807 909 1.004560 TGGCTCTGCTTTCGGTCTG 60.005 57.895 0.00 0.00 0.00 3.51
808 910 1.294780 CTGGCTCTGCTTTCGGTCT 59.705 57.895 0.00 0.00 0.00 3.85
809 911 2.394563 GCTGGCTCTGCTTTCGGTC 61.395 63.158 0.00 0.00 0.00 4.79
810 912 2.359230 GCTGGCTCTGCTTTCGGT 60.359 61.111 0.00 0.00 0.00 4.69
824 926 1.775039 CTCCTCTCTCTCGCTCGCTG 61.775 65.000 0.00 0.00 0.00 5.18
926 1028 3.151906 CTATTCCTGGGGGCCTCG 58.848 66.667 0.84 0.00 0.00 4.63
991 1102 3.489513 GTTCCCCATCCCCTCGGG 61.490 72.222 0.00 0.00 46.11 5.14
992 1103 3.861797 CGTTCCCCATCCCCTCGG 61.862 72.222 0.00 0.00 0.00 4.63
993 1104 3.081409 ACGTTCCCCATCCCCTCG 61.081 66.667 0.00 0.00 0.00 4.63
994 1105 1.993391 TCACGTTCCCCATCCCCTC 60.993 63.158 0.00 0.00 0.00 4.30
1324 1435 2.442458 GAGAGGGGGAGACGGGAC 60.442 72.222 0.00 0.00 0.00 4.46
1327 1438 3.742248 GAGGGAGAGGGGGAGACGG 62.742 73.684 0.00 0.00 0.00 4.79
1329 1440 2.284151 GGAGGGAGAGGGGGAGAC 59.716 72.222 0.00 0.00 0.00 3.36
1330 1441 3.036959 GGGAGGGAGAGGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
1334 1445 4.179599 GAGGGGGAGGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1350 1461 0.252103 AAACTGGAGGCTACGGAGGA 60.252 55.000 13.86 0.00 0.00 3.71
1364 1475 3.192001 CCACATGATGTTGAGGGAAACTG 59.808 47.826 0.00 0.00 0.00 3.16
1376 1487 2.511218 AGGAGCATAACCCACATGATGT 59.489 45.455 0.00 0.00 0.00 3.06
1377 1488 2.882761 CAGGAGCATAACCCACATGATG 59.117 50.000 0.00 0.00 0.00 3.07
1378 1489 2.750807 GCAGGAGCATAACCCACATGAT 60.751 50.000 0.00 0.00 41.58 2.45
1379 1490 1.408683 GCAGGAGCATAACCCACATGA 60.409 52.381 0.00 0.00 41.58 3.07
1380 1491 1.027357 GCAGGAGCATAACCCACATG 58.973 55.000 0.00 0.00 41.58 3.21
1381 1492 3.502164 GCAGGAGCATAACCCACAT 57.498 52.632 0.00 0.00 41.58 3.21
1421 1537 3.620374 CAGAAGATGAACCTGAACATCGG 59.380 47.826 0.00 0.00 44.92 4.18
1426 1542 2.417719 ACGCAGAAGATGAACCTGAAC 58.582 47.619 0.00 0.00 0.00 3.18
1465 1581 4.704103 AGGAGGCTGTGCGGAGGA 62.704 66.667 0.00 0.00 0.00 3.71
1470 1593 4.069232 TCGGAAGGAGGCTGTGCG 62.069 66.667 0.00 0.00 0.00 5.34
1488 1611 0.971386 AACAGCCTGCCAAAATCCAG 59.029 50.000 0.00 0.00 0.00 3.86
1493 1616 1.442567 CAGCAACAGCCTGCCAAAA 59.557 52.632 0.00 0.00 43.73 2.44
1509 1632 6.091437 GGAATATTACGAGGAATACGACCAG 58.909 44.000 0.00 0.00 34.70 4.00
1556 1679 1.162181 CCGGATCAGCATGCGTTGAT 61.162 55.000 19.25 19.25 44.81 2.57
1557 1680 1.815003 CCGGATCAGCATGCGTTGA 60.815 57.895 13.01 12.21 42.02 3.18
1560 1683 1.815421 GAACCGGATCAGCATGCGT 60.815 57.895 9.46 2.10 42.02 5.24
1572 1695 2.973694 TTAAATCCTCCTCGAACCGG 57.026 50.000 0.00 0.00 0.00 5.28
1631 1754 5.977129 CGCCACCTAATTCATTGTTTATTCC 59.023 40.000 0.00 0.00 0.00 3.01
1639 1762 2.223249 CCGAACGCCACCTAATTCATTG 60.223 50.000 0.00 0.00 0.00 2.82
1667 1791 2.158986 AGATCTTCGCCAGGTCAATCAG 60.159 50.000 0.00 0.00 34.60 2.90
1680 1804 6.367149 TGATGAAACAGAGAAACAGATCTTCG 59.633 38.462 0.00 0.00 0.00 3.79
1688 1812 5.070981 AGAGGAGTGATGAAACAGAGAAACA 59.929 40.000 0.00 0.00 0.00 2.83
1690 1814 5.545588 CAGAGGAGTGATGAAACAGAGAAA 58.454 41.667 0.00 0.00 0.00 2.52
1692 1816 3.056250 GCAGAGGAGTGATGAAACAGAGA 60.056 47.826 0.00 0.00 0.00 3.10
1693 1817 3.055963 AGCAGAGGAGTGATGAAACAGAG 60.056 47.826 0.00 0.00 0.00 3.35
1694 1818 2.902486 AGCAGAGGAGTGATGAAACAGA 59.098 45.455 0.00 0.00 0.00 3.41
1695 1819 3.001414 CAGCAGAGGAGTGATGAAACAG 58.999 50.000 0.00 0.00 35.82 3.16
1696 1820 2.634453 TCAGCAGAGGAGTGATGAAACA 59.366 45.455 0.00 0.00 39.83 2.83
1697 1821 3.325293 TCAGCAGAGGAGTGATGAAAC 57.675 47.619 0.00 0.00 39.83 2.78
1700 1824 7.147932 GCTATATATTCAGCAGAGGAGTGATGA 60.148 40.741 3.09 0.00 41.01 2.92
1701 1825 6.979817 GCTATATATTCAGCAGAGGAGTGATG 59.020 42.308 3.09 0.00 37.73 3.07
1702 1826 6.098124 GGCTATATATTCAGCAGAGGAGTGAT 59.902 42.308 9.23 0.00 39.63 3.06
1704 1828 5.421693 AGGCTATATATTCAGCAGAGGAGTG 59.578 44.000 9.23 0.00 39.63 3.51
1705 1829 5.421693 CAGGCTATATATTCAGCAGAGGAGT 59.578 44.000 9.23 0.00 39.63 3.85
1706 1830 5.681954 GCAGGCTATATATTCAGCAGAGGAG 60.682 48.000 9.23 0.00 39.63 3.69
1707 1831 4.161189 GCAGGCTATATATTCAGCAGAGGA 59.839 45.833 9.23 0.00 39.63 3.71
1708 1832 4.161942 AGCAGGCTATATATTCAGCAGAGG 59.838 45.833 9.23 0.00 39.63 3.69
1709 1833 5.341872 AGCAGGCTATATATTCAGCAGAG 57.658 43.478 9.23 1.03 39.63 3.35
1710 1834 5.337894 GGAAGCAGGCTATATATTCAGCAGA 60.338 44.000 9.23 0.00 39.63 4.26
1711 1835 4.874966 GGAAGCAGGCTATATATTCAGCAG 59.125 45.833 9.23 3.32 39.63 4.24
1712 1836 4.286808 TGGAAGCAGGCTATATATTCAGCA 59.713 41.667 9.23 0.00 39.63 4.41
1713 1837 4.836825 TGGAAGCAGGCTATATATTCAGC 58.163 43.478 0.00 0.00 37.05 4.26
1714 1838 7.934855 AAATGGAAGCAGGCTATATATTCAG 57.065 36.000 0.00 0.00 0.00 3.02
1715 1839 8.710749 AAAAATGGAAGCAGGCTATATATTCA 57.289 30.769 0.00 0.00 0.00 2.57
1808 1932 7.416890 CCGGAATTGTGACTAGGATAGGATATC 60.417 44.444 0.00 0.00 44.97 1.63
1901 2027 2.783510 TGAAAAACCTGGGGTCTTCTCT 59.216 45.455 0.00 0.00 33.12 3.10
1909 2035 1.112916 AGCCGTTGAAAAACCTGGGG 61.113 55.000 0.00 0.00 0.00 4.96
2001 2127 0.729116 CAACAGCAGAATAGCACCCG 59.271 55.000 0.00 0.00 36.85 5.28
2042 2169 1.071699 TGGCCACTAACAAGACTGACC 59.928 52.381 0.00 0.00 0.00 4.02
2103 2233 8.795513 CAAATGGACAAATCTATATGCCACATA 58.204 33.333 0.00 0.00 0.00 2.29
2143 2278 7.009999 CACTCTCAAATCTTCGATTCCTTGTAG 59.990 40.741 0.00 0.00 0.00 2.74
2144 2279 6.813649 CACTCTCAAATCTTCGATTCCTTGTA 59.186 38.462 0.00 0.00 0.00 2.41
2145 2280 5.641209 CACTCTCAAATCTTCGATTCCTTGT 59.359 40.000 0.00 0.00 0.00 3.16
2146 2281 5.447010 GCACTCTCAAATCTTCGATTCCTTG 60.447 44.000 0.00 0.00 0.00 3.61
2318 2460 3.126001 TCAACAAGATCCACCAGACAC 57.874 47.619 0.00 0.00 0.00 3.67
2586 2811 4.144297 ACTGCAGATTTAAGCAACAGGAA 58.856 39.130 23.35 0.00 40.73 3.36
2748 2975 6.898041 TCGAAGAACACAAAGTTGATTATGG 58.102 36.000 0.00 0.00 41.51 2.74
2757 2984 4.750098 CACACCTATCGAAGAACACAAAGT 59.250 41.667 0.00 0.00 43.58 2.66
2815 3042 3.274288 CCAACAAAGATAGGAGTGGCTC 58.726 50.000 0.00 0.00 0.00 4.70
3126 3354 3.356529 ACTCCAATTGTCTCCCATGTC 57.643 47.619 4.43 0.00 0.00 3.06
3156 3384 8.532341 CACATGAACGTGTCTACTATCATTTAC 58.468 37.037 0.00 0.00 31.51 2.01
3239 3471 5.224821 AGAAAAGGAGCGTAGTTAGGTTT 57.775 39.130 0.00 0.00 0.00 3.27
3260 3492 3.186409 TCAAAGCGGAAAACAAGATCGAG 59.814 43.478 0.00 0.00 0.00 4.04
3280 3512 3.028130 TGTTATACTCCGATGGCTGTCA 58.972 45.455 0.00 0.00 0.00 3.58
3537 3777 3.547468 CAGAACCAAAGTGAAAAAGCGTG 59.453 43.478 0.00 0.00 0.00 5.34
3542 3782 5.584251 GGCATTTCAGAACCAAAGTGAAAAA 59.416 36.000 1.21 0.00 42.03 1.94
3580 3820 2.301346 GGCAGTAAGGTGATGATTGGG 58.699 52.381 0.00 0.00 0.00 4.12
3582 3822 4.400251 ACATTGGCAGTAAGGTGATGATTG 59.600 41.667 0.00 0.00 0.00 2.67
3603 3843 4.362932 TTTTGTCGATGTTCTGCAAACA 57.637 36.364 14.09 14.09 34.31 2.83
3715 3955 7.093596 ACACACAGATCAATGAGATAGACTTGA 60.094 37.037 0.00 0.00 37.00 3.02
3796 4036 9.834628 TCTATTTTTGTAATAGTTTCAAAGGCG 57.165 29.630 0.00 0.00 33.61 5.52
3828 4068 7.013369 GGTGGGAAGGACTATCATATGTTTTTC 59.987 40.741 1.90 0.00 0.00 2.29
3844 4084 1.518367 AGTTCTTGTGGTGGGAAGGA 58.482 50.000 0.00 0.00 0.00 3.36
3845 4085 1.956477 CAAGTTCTTGTGGTGGGAAGG 59.044 52.381 4.58 0.00 0.00 3.46
3846 4086 2.654863 ACAAGTTCTTGTGGTGGGAAG 58.345 47.619 15.98 0.00 33.23 3.46
3873 4113 2.550855 GCATCAGAAGTTCAGGACACCA 60.551 50.000 5.50 0.00 0.00 4.17
3874 4114 2.079925 GCATCAGAAGTTCAGGACACC 58.920 52.381 5.50 0.00 0.00 4.16
3875 4115 2.771089 TGCATCAGAAGTTCAGGACAC 58.229 47.619 5.50 0.00 0.00 3.67
3883 4123 6.262496 CAGATGTTCCATATGCATCAGAAGTT 59.738 38.462 18.34 0.00 40.86 2.66
3887 4127 5.061179 CACAGATGTTCCATATGCATCAGA 58.939 41.667 18.34 0.00 40.86 3.27
3903 4143 3.885297 GGGGACATCAATAACCACAGATG 59.115 47.826 0.00 0.00 42.61 2.90
3904 4144 3.117512 GGGGGACATCAATAACCACAGAT 60.118 47.826 0.00 0.00 0.00 2.90
3909 4149 2.855599 TCATGGGGGACATCAATAACCA 59.144 45.455 0.00 0.00 37.84 3.67
3911 4151 4.099419 GGTTTCATGGGGGACATCAATAAC 59.901 45.833 0.00 0.00 37.84 1.89
3918 4158 0.324645 GCAGGTTTCATGGGGGACAT 60.325 55.000 0.00 0.00 41.57 3.06
3926 4166 2.490509 TGCATTCTGAGCAGGTTTCATG 59.509 45.455 0.00 0.00 37.02 3.07
3998 4238 4.917385 TGGCACAAAGATAGTGTAACCAT 58.083 39.130 0.00 0.00 39.17 3.55
4082 4323 2.014857 CCCTGACATGTGATTCAGCAG 58.985 52.381 1.15 1.91 38.36 4.24
4270 4511 0.667487 CTTTGTCGCTCGCTCCTTCA 60.667 55.000 0.00 0.00 0.00 3.02
4437 4678 1.003233 GGCTGGCTTCTTCCGTTCT 60.003 57.895 0.00 0.00 0.00 3.01
4514 4756 2.359975 CGTTGCACTTCCCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
4515 4757 2.359975 CCGTTGCACTTCCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
4516 4758 3.056328 GCCGTTGCACTTCCCTCC 61.056 66.667 0.00 0.00 37.47 4.30
4517 4759 3.423154 CGCCGTTGCACTTCCCTC 61.423 66.667 0.00 0.00 37.32 4.30
4518 4760 4.250305 ACGCCGTTGCACTTCCCT 62.250 61.111 0.00 0.00 37.32 4.20
4574 4816 1.635487 AGCCATGGAGCCTGTCTAAAA 59.365 47.619 18.40 0.00 0.00 1.52
4575 4817 1.065199 CAGCCATGGAGCCTGTCTAAA 60.065 52.381 18.40 0.00 0.00 1.85
4607 4849 4.391523 GCTTCTGTTTCTCTTCAGTCATCC 59.608 45.833 0.00 0.00 33.89 3.51
4687 4929 0.325203 AGGAGAGAGAGCCCCAACTC 60.325 60.000 0.00 0.00 36.91 3.01
4720 4963 4.333649 CACATCAACTAATACACAGGCTGG 59.666 45.833 20.34 10.34 0.00 4.85
4753 4996 5.074102 TGCAATCAATTAGGAGAGATGGGAT 59.926 40.000 0.00 0.00 0.00 3.85
4755 4998 4.722220 TGCAATCAATTAGGAGAGATGGG 58.278 43.478 0.00 0.00 0.00 4.00
4803 5046 1.086696 CCAGACACCTAAATGCCACG 58.913 55.000 0.00 0.00 0.00 4.94
4822 5065 3.782889 AGCAAACTGAAACTGTGAACC 57.217 42.857 0.00 0.00 0.00 3.62
4823 5066 4.986622 AGAAGCAAACTGAAACTGTGAAC 58.013 39.130 0.00 0.00 0.00 3.18
4825 5068 4.458989 ACAAGAAGCAAACTGAAACTGTGA 59.541 37.500 0.00 0.00 0.00 3.58
4826 5069 4.737054 ACAAGAAGCAAACTGAAACTGTG 58.263 39.130 0.00 0.00 0.00 3.66
4827 5070 4.702131 AGACAAGAAGCAAACTGAAACTGT 59.298 37.500 0.00 0.00 0.00 3.55
4835 5089 2.689983 CAACCCAGACAAGAAGCAAACT 59.310 45.455 0.00 0.00 0.00 2.66
4836 5090 2.799562 GCAACCCAGACAAGAAGCAAAC 60.800 50.000 0.00 0.00 0.00 2.93
4864 5118 5.656859 TCCTGTTTAGCTCTGCTATGAAGTA 59.343 40.000 0.00 0.00 41.01 2.24
4866 5120 5.016051 TCCTGTTTAGCTCTGCTATGAAG 57.984 43.478 0.00 0.00 41.01 3.02
4880 5134 3.723922 GGCCCGGCCTCCTGTTTA 61.724 66.667 22.31 0.00 46.69 2.01
4892 5146 1.746470 CAGGTTAAGGTTAAGGCCCG 58.254 55.000 0.00 0.00 0.00 6.13
4894 5148 1.005569 AGGCAGGTTAAGGTTAAGGCC 59.994 52.381 0.00 0.00 36.53 5.19
4896 5150 2.092323 GCAGGCAGGTTAAGGTTAAGG 58.908 52.381 0.00 0.00 0.00 2.69
4951 5249 5.071923 GGGCAGAGGGAGTAGTTAATTATGT 59.928 44.000 0.00 0.00 0.00 2.29
4962 5260 2.815357 ATTATGGGGCAGAGGGAGTA 57.185 50.000 0.00 0.00 0.00 2.59
4964 5262 5.032846 TCTTATATTATGGGGCAGAGGGAG 58.967 45.833 0.00 0.00 0.00 4.30
4965 5263 5.036470 TCTTATATTATGGGGCAGAGGGA 57.964 43.478 0.00 0.00 0.00 4.20
4966 5264 5.453903 CGATCTTATATTATGGGGCAGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
4967 5265 5.129485 ACGATCTTATATTATGGGGCAGAGG 59.871 44.000 0.00 0.00 0.00 3.69
4968 5266 6.097554 AGACGATCTTATATTATGGGGCAGAG 59.902 42.308 0.00 0.00 0.00 3.35
4969 5267 5.958380 AGACGATCTTATATTATGGGGCAGA 59.042 40.000 0.00 0.00 0.00 4.26
4970 5268 6.227298 AGACGATCTTATATTATGGGGCAG 57.773 41.667 0.00 0.00 0.00 4.85
4971 5269 6.620877 AAGACGATCTTATATTATGGGGCA 57.379 37.500 0.00 0.00 34.42 5.36
4972 5270 8.421784 TGATAAGACGATCTTATATTATGGGGC 58.578 37.037 15.60 5.80 46.46 5.80
4973 5271 9.751542 GTGATAAGACGATCTTATATTATGGGG 57.248 37.037 15.60 0.00 46.46 4.96
4983 5281 8.687242 AGTTTCTCATGTGATAAGACGATCTTA 58.313 33.333 9.04 9.04 42.49 2.10
4984 5282 7.551585 AGTTTCTCATGTGATAAGACGATCTT 58.448 34.615 0.00 0.00 40.35 2.40
4985 5283 7.106439 AGTTTCTCATGTGATAAGACGATCT 57.894 36.000 0.00 0.00 0.00 2.75
4986 5284 7.254252 CCAAGTTTCTCATGTGATAAGACGATC 60.254 40.741 0.00 0.00 0.00 3.69
4987 5285 6.536582 CCAAGTTTCTCATGTGATAAGACGAT 59.463 38.462 0.00 0.00 0.00 3.73
4988 5286 5.869344 CCAAGTTTCTCATGTGATAAGACGA 59.131 40.000 0.00 0.00 0.00 4.20
4989 5287 5.639506 ACCAAGTTTCTCATGTGATAAGACG 59.360 40.000 0.00 0.00 0.00 4.18
4990 5288 6.650807 TGACCAAGTTTCTCATGTGATAAGAC 59.349 38.462 0.00 0.00 0.00 3.01
4991 5289 6.768483 TGACCAAGTTTCTCATGTGATAAGA 58.232 36.000 0.00 0.00 0.00 2.10
4992 5290 6.652481 ACTGACCAAGTTTCTCATGTGATAAG 59.348 38.462 0.00 0.00 34.57 1.73
4993 5291 6.533730 ACTGACCAAGTTTCTCATGTGATAA 58.466 36.000 0.00 0.00 34.57 1.75
5007 5305 2.230660 GCCTTGCTTTACTGACCAAGT 58.769 47.619 0.00 0.00 43.40 3.16
5035 5333 2.029970 CGTTCGATTTACCATGGTTCGG 59.970 50.000 28.37 14.67 0.00 4.30
5036 5334 2.669434 ACGTTCGATTTACCATGGTTCG 59.331 45.455 25.38 25.17 0.00 3.95
5037 5335 4.673534 AACGTTCGATTTACCATGGTTC 57.326 40.909 25.38 13.99 0.00 3.62
5038 5336 5.008811 TGAAAACGTTCGATTTACCATGGTT 59.991 36.000 25.38 4.60 36.46 3.67
5044 5416 4.460505 CCACTGAAAACGTTCGATTTACC 58.539 43.478 0.00 0.00 36.46 2.85
5046 5418 3.560481 TGCCACTGAAAACGTTCGATTTA 59.440 39.130 0.00 0.00 36.46 1.40
5052 5424 6.576551 TTAAAATTGCCACTGAAAACGTTC 57.423 33.333 0.00 0.00 0.00 3.95
5062 5434 2.486203 TCGCGTCATTAAAATTGCCACT 59.514 40.909 5.77 0.00 0.00 4.00
5063 5435 2.845967 CTCGCGTCATTAAAATTGCCAC 59.154 45.455 5.77 0.00 0.00 5.01
5080 5452 2.678336 CAACTAAACTTCCCATCCTCGC 59.322 50.000 0.00 0.00 0.00 5.03
5085 5457 3.120304 GCGTGTCAACTAAACTTCCCATC 60.120 47.826 0.00 0.00 0.00 3.51
5090 5462 2.887733 CGTGCGTGTCAACTAAACTTC 58.112 47.619 0.00 0.00 0.00 3.01
5098 5470 4.012895 CCAGGCGTGCGTGTCAAC 62.013 66.667 12.86 0.00 0.00 3.18
5114 5545 1.985684 GACAGCAATTTTAGCAACGCC 59.014 47.619 0.00 0.00 0.00 5.68
5119 5550 3.812609 TGTTCTCGACAGCAATTTTAGCA 59.187 39.130 0.00 0.00 33.40 3.49
5120 5551 4.404507 TGTTCTCGACAGCAATTTTAGC 57.595 40.909 0.00 0.00 33.40 3.09
5121 5552 7.077605 TCAAATGTTCTCGACAGCAATTTTAG 58.922 34.615 0.00 0.00 42.62 1.85
5131 5562 3.567585 TGGCAAATCAAATGTTCTCGACA 59.432 39.130 0.00 0.00 43.71 4.35
5132 5563 4.159377 TGGCAAATCAAATGTTCTCGAC 57.841 40.909 0.00 0.00 0.00 4.20
5134 5565 3.861113 CCATGGCAAATCAAATGTTCTCG 59.139 43.478 0.00 0.00 0.00 4.04
5135 5566 4.824289 ACCATGGCAAATCAAATGTTCTC 58.176 39.130 13.04 0.00 0.00 2.87
5136 5567 4.283978 TGACCATGGCAAATCAAATGTTCT 59.716 37.500 13.04 0.00 0.00 3.01
5137 5568 4.567971 TGACCATGGCAAATCAAATGTTC 58.432 39.130 13.04 0.00 0.00 3.18
5139 5570 3.833650 TCTGACCATGGCAAATCAAATGT 59.166 39.130 13.04 0.00 0.00 2.71
5141 5572 5.395990 GGAATCTGACCATGGCAAATCAAAT 60.396 40.000 13.04 0.00 0.00 2.32
5144 5575 3.025978 GGAATCTGACCATGGCAAATCA 58.974 45.455 13.04 7.16 0.00 2.57
5150 5581 1.017387 GTTCGGAATCTGACCATGGC 58.983 55.000 13.04 5.35 0.00 4.40
5151 5582 2.698855 AGTTCGGAATCTGACCATGG 57.301 50.000 11.19 11.19 0.00 3.66
5152 5583 3.062639 CGAAAGTTCGGAATCTGACCATG 59.937 47.826 5.53 0.00 46.30 3.66
5153 5584 3.262420 CGAAAGTTCGGAATCTGACCAT 58.738 45.455 5.53 0.00 46.30 3.55
5154 5585 2.683968 CGAAAGTTCGGAATCTGACCA 58.316 47.619 5.53 0.00 46.30 4.02
5166 5597 1.131693 CCAATAACGCCCCGAAAGTTC 59.868 52.381 0.00 0.00 0.00 3.01
5167 5598 1.170442 CCAATAACGCCCCGAAAGTT 58.830 50.000 0.00 0.00 0.00 2.66
5168 5599 0.678684 CCCAATAACGCCCCGAAAGT 60.679 55.000 0.00 0.00 0.00 2.66
5169 5600 1.381165 CCCCAATAACGCCCCGAAAG 61.381 60.000 0.00 0.00 0.00 2.62
5170 5601 1.378778 CCCCAATAACGCCCCGAAA 60.379 57.895 0.00 0.00 0.00 3.46
5171 5602 2.272797 CCCCAATAACGCCCCGAA 59.727 61.111 0.00 0.00 0.00 4.30
5172 5603 3.010314 ACCCCAATAACGCCCCGA 61.010 61.111 0.00 0.00 0.00 5.14
5173 5604 2.515290 GACCCCAATAACGCCCCG 60.515 66.667 0.00 0.00 0.00 5.73
5174 5605 2.515290 CGACCCCAATAACGCCCC 60.515 66.667 0.00 0.00 0.00 5.80
5175 5606 0.107752 TAACGACCCCAATAACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
5176 5607 1.869132 GATAACGACCCCAATAACGCC 59.131 52.381 0.00 0.00 0.00 5.68
5177 5608 2.830104 AGATAACGACCCCAATAACGC 58.170 47.619 0.00 0.00 0.00 4.84
5178 5609 5.806366 AAAAGATAACGACCCCAATAACG 57.194 39.130 0.00 0.00 0.00 3.18
5179 5610 8.441312 TCATAAAAGATAACGACCCCAATAAC 57.559 34.615 0.00 0.00 0.00 1.89
5180 5611 9.062524 CATCATAAAAGATAACGACCCCAATAA 57.937 33.333 0.00 0.00 0.00 1.40
5181 5612 8.433599 TCATCATAAAAGATAACGACCCCAATA 58.566 33.333 0.00 0.00 0.00 1.90
5182 5613 7.287061 TCATCATAAAAGATAACGACCCCAAT 58.713 34.615 0.00 0.00 0.00 3.16
5183 5614 6.654959 TCATCATAAAAGATAACGACCCCAA 58.345 36.000 0.00 0.00 0.00 4.12
5184 5615 6.241882 TCATCATAAAAGATAACGACCCCA 57.758 37.500 0.00 0.00 0.00 4.96
5185 5616 6.292703 CGTTCATCATAAAAGATAACGACCCC 60.293 42.308 0.00 0.00 37.28 4.95
5194 5625 9.956720 GAAATGGATTCGTTCATCATAAAAGAT 57.043 29.630 0.00 0.00 0.00 2.40
5256 5687 4.144297 AGGAATGCTCTGCTGTAAAACAA 58.856 39.130 0.00 0.00 0.00 2.83
5283 5714 2.224281 TGTTGCGACCAGTTGAGAGAAT 60.224 45.455 0.45 0.00 0.00 2.40
5284 5715 1.138069 TGTTGCGACCAGTTGAGAGAA 59.862 47.619 0.45 0.00 0.00 2.87
5288 5719 1.400142 TGTTTGTTGCGACCAGTTGAG 59.600 47.619 0.45 0.00 0.00 3.02
5319 5750 0.191064 ACAACTCTCAGGGACCTCCA 59.809 55.000 0.00 0.00 38.24 3.86
5365 5802 1.958288 TCTCCAGGGGAAGAAGAAGG 58.042 55.000 0.00 0.00 0.00 3.46
5401 5838 7.501225 TCATACGGAGTTCAGATTGATGTACTA 59.499 37.037 0.00 0.00 37.78 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.