Multiple sequence alignment - TraesCS6B01G392100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G392100 chr6B 100.000 4527 0 0 1 4527 667249353 667244827 0.000000e+00 8360.0
1 TraesCS6B01G392100 chr6D 94.056 3903 210 17 481 4374 441714693 441710804 0.000000e+00 5903.0
2 TraesCS6B01G392100 chr6D 90.909 484 26 6 1 482 441715204 441714737 6.390000e-178 634.0
3 TraesCS6B01G392100 chr6D 93.711 159 10 0 4369 4527 441691952 441691794 5.850000e-59 239.0
4 TraesCS6B01G392100 chr6A 93.208 3578 216 16 481 4045 590896722 590893159 0.000000e+00 5236.0
5 TraesCS6B01G392100 chr6A 88.430 484 31 5 1 482 590897224 590896764 1.100000e-155 560.0
6 TraesCS6B01G392100 chr6A 92.239 335 24 1 4040 4374 590889321 590888989 1.470000e-129 473.0
7 TraesCS6B01G392100 chr6A 91.824 159 13 0 4369 4527 590517533 590517375 5.890000e-54 222.0
8 TraesCS6B01G392100 chr6A 91.824 159 13 0 4369 4527 590596838 590596680 5.890000e-54 222.0
9 TraesCS6B01G392100 chr2D 81.457 3144 459 84 541 3643 31895702 31898762 0.000000e+00 2462.0
10 TraesCS6B01G392100 chr2A 80.673 3120 490 76 560 3643 33951617 33954659 0.000000e+00 2316.0
11 TraesCS6B01G392100 chr2A 80.282 1988 312 49 560 2523 33785836 33787767 0.000000e+00 1426.0
12 TraesCS6B01G392100 chr2A 83.040 1138 166 16 2517 3643 33790456 33791577 0.000000e+00 1007.0
13 TraesCS6B01G392100 chr5D 81.019 3003 460 75 664 3633 227544162 227547087 0.000000e+00 2287.0
14 TraesCS6B01G392100 chr5A 80.459 2963 478 70 595 3535 305278021 305280904 0.000000e+00 2170.0
15 TraesCS6B01G392100 chr5A 95.349 43 2 0 3998 4040 309920782 309920824 8.130000e-08 69.4
16 TraesCS6B01G392100 chr5B 79.825 2964 480 72 595 3535 250951469 250954337 0.000000e+00 2052.0
17 TraesCS6B01G392100 chr2B 82.307 1933 289 30 1698 3621 52511877 52509989 0.000000e+00 1626.0
18 TraesCS6B01G392100 chr2B 81.107 2006 294 52 1658 3643 52223799 52225739 0.000000e+00 1526.0
19 TraesCS6B01G392100 chr2B 79.561 1003 168 26 560 1548 52222762 52223741 0.000000e+00 682.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G392100 chr6B 667244827 667249353 4526 True 8360.000000 8360 100.000000 1 4527 1 chr6B.!!$R1 4526
1 TraesCS6B01G392100 chr6D 441710804 441715204 4400 True 3268.500000 5903 92.482500 1 4374 2 chr6D.!!$R2 4373
2 TraesCS6B01G392100 chr6A 590888989 590897224 8235 True 2089.666667 5236 91.292333 1 4374 3 chr6A.!!$R3 4373
3 TraesCS6B01G392100 chr2D 31895702 31898762 3060 False 2462.000000 2462 81.457000 541 3643 1 chr2D.!!$F1 3102
4 TraesCS6B01G392100 chr2A 33951617 33954659 3042 False 2316.000000 2316 80.673000 560 3643 1 chr2A.!!$F1 3083
5 TraesCS6B01G392100 chr2A 33785836 33791577 5741 False 1216.500000 1426 81.661000 560 3643 2 chr2A.!!$F2 3083
6 TraesCS6B01G392100 chr5D 227544162 227547087 2925 False 2287.000000 2287 81.019000 664 3633 1 chr5D.!!$F1 2969
7 TraesCS6B01G392100 chr5A 305278021 305280904 2883 False 2170.000000 2170 80.459000 595 3535 1 chr5A.!!$F1 2940
8 TraesCS6B01G392100 chr5B 250951469 250954337 2868 False 2052.000000 2052 79.825000 595 3535 1 chr5B.!!$F1 2940
9 TraesCS6B01G392100 chr2B 52509989 52511877 1888 True 1626.000000 1626 82.307000 1698 3621 1 chr2B.!!$R1 1923
10 TraesCS6B01G392100 chr2B 52222762 52225739 2977 False 1104.000000 1526 80.334000 560 3643 2 chr2B.!!$F1 3083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.0 0.00 4.49 F
1122 1185 1.032114 GCGGGGTCCCTTTGAATCAG 61.032 60.000 8.15 0.0 0.00 2.90 F
1749 1818 2.149578 CAAGCTCTTTCCCACAGAGTG 58.850 52.381 0.00 0.0 40.13 3.51 F
3280 6084 0.683179 GGGGTGGGTATGTTCAAGGC 60.683 60.000 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1905 0.257328 TGGACCCTTCTGTTGTTGCA 59.743 50.0 0.00 0.0 0.00 4.08 R
2088 2159 3.371965 TGGACTACCTTGGACCATCTAC 58.628 50.0 0.00 0.0 37.04 2.59 R
3292 6096 0.102120 CCATCTGCGGAGAGTCTGAC 59.898 60.0 13.48 0.0 0.00 3.51 R
4407 11072 1.092348 GGCCAACTTCGTAATGACCC 58.908 55.0 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.176865 GTCTTAAAGCCTTTTAGGATCACCTTT 59.823 37.037 3.60 0.00 45.36 3.11
32 33 5.449177 GCCTTTTAGGATCACCTTTCATTCG 60.449 44.000 0.00 0.00 45.36 3.34
43 44 4.917415 CACCTTTCATTCGAATGTTGTTCC 59.083 41.667 31.49 0.00 37.65 3.62
47 48 6.072728 CCTTTCATTCGAATGTTGTTCCAGTA 60.073 38.462 31.49 10.71 37.65 2.74
59 60 7.222000 TGTTGTTCCAGTAAAGAACTTTGTT 57.778 32.000 9.66 0.00 43.28 2.83
244 245 2.697431 ACAAACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
245 246 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
246 247 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
247 248 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.00 0.00 4.49
269 270 4.479619 GCACAAGCCATCTTTTACTTCAG 58.520 43.478 0.00 0.00 33.58 3.02
279 280 8.135529 GCCATCTTTTACTTCAGTTACAACTTT 58.864 33.333 0.00 0.00 37.08 2.66
355 360 8.391106 CCACACTTGCAACTATCTTAATTAGAC 58.609 37.037 0.00 0.00 35.19 2.59
380 386 7.390718 ACAGTTTGGGTAAGTAATCACAGATTC 59.609 37.037 0.00 0.00 0.00 2.52
391 397 9.606631 AAGTAATCACAGATTCCATAGAAAGTC 57.393 33.333 0.00 0.00 35.09 3.01
443 449 9.059023 AGAATAGGAAACCTACCTTTAACTCAT 57.941 33.333 0.00 0.00 39.10 2.90
477 483 8.853077 TCAAGACTCAATACTTTCACATTCAT 57.147 30.769 0.00 0.00 0.00 2.57
484 490 9.642312 CTCAATACTTTCACATTCATATTGACG 57.358 33.333 0.00 0.00 35.28 4.35
489 540 6.593770 ACTTTCACATTCATATTGACGTAGCA 59.406 34.615 0.00 0.00 0.00 3.49
524 575 4.099266 AGGAGAGAGTGATGCATCTTGTAC 59.901 45.833 26.32 16.24 0.00 2.90
554 605 7.087775 ACACTATGTGGAGAGCAATCTACTCT 61.088 42.308 6.31 0.00 40.89 3.24
641 701 6.522625 TTTGGGCATTAATCGAAGATTTCA 57.477 33.333 0.34 0.00 45.12 2.69
710 770 6.582677 AGTATAGATGACATGTCACCTAGC 57.417 41.667 29.28 23.89 38.97 3.42
722 782 5.777850 TGTCACCTAGCGCTAACATTATA 57.222 39.130 19.37 0.00 0.00 0.98
870 932 9.964303 TGCAATTAGTACCATGCTTTTTATATG 57.036 29.630 10.04 0.00 39.49 1.78
1044 1107 3.064545 GTGTGACCATTCTCTTAGCATGC 59.935 47.826 10.51 10.51 0.00 4.06
1077 1140 4.001652 CCCTCGGAGGAAAAGAAGTTAAC 58.998 47.826 25.60 0.00 37.67 2.01
1095 1158 7.002816 AGTTAACTGTATAAGACGAGACGAG 57.997 40.000 7.48 0.00 0.00 4.18
1122 1185 1.032114 GCGGGGTCCCTTTGAATCAG 61.032 60.000 8.15 0.00 0.00 2.90
1591 1657 8.041919 TGCAACATTTTGATATGATCACCAAAT 58.958 29.630 15.86 4.93 39.39 2.32
1660 1727 4.087930 GCATTATAACACAAACACGCACAC 59.912 41.667 0.00 0.00 0.00 3.82
1749 1818 2.149578 CAAGCTCTTTCCCACAGAGTG 58.850 52.381 0.00 0.00 40.13 3.51
1754 1823 3.808728 CTCTTTCCCACAGAGTGTTTCA 58.191 45.455 0.00 0.00 34.18 2.69
1765 1834 3.891366 CAGAGTGTTTCAACCAAATCCCT 59.109 43.478 0.00 0.00 0.00 4.20
2044 2115 9.905713 ACATGTGACACCAATAATTATCTAACT 57.094 29.630 0.00 0.00 0.00 2.24
2125 2196 9.462606 AAGGTAGTCCAATAAGTAAATGGAAAG 57.537 33.333 0.00 0.00 44.41 2.62
2131 2202 8.244113 GTCCAATAAGTAAATGGAAAGAACTGG 58.756 37.037 0.00 0.00 44.41 4.00
2144 2215 8.073467 TGGAAAGAACTGGTTTTGAAAAGTAT 57.927 30.769 0.00 0.00 0.00 2.12
2225 2297 8.968242 GTTTCTCAAAGTGTTTGGTCAATATTC 58.032 33.333 0.00 0.00 40.98 1.75
2608 5383 5.935789 CCTTGGATGTGCATTCTTCAATTTT 59.064 36.000 0.00 0.00 0.00 1.82
2609 5384 6.428771 CCTTGGATGTGCATTCTTCAATTTTT 59.571 34.615 0.00 0.00 0.00 1.94
2661 5453 6.723298 TGTTATTGACCTTGGAACACATTT 57.277 33.333 0.00 0.00 39.29 2.32
2679 5471 6.549364 ACACATTTTCTGTAAAGGTTGATGGA 59.451 34.615 0.00 0.00 38.59 3.41
2690 5482 8.792633 TGTAAAGGTTGATGGATTAAAGAACAG 58.207 33.333 0.00 0.00 0.00 3.16
3007 5807 8.798975 ATATTTTGACATAGAGGGGAGAGTAA 57.201 34.615 0.00 0.00 0.00 2.24
3008 5808 6.945636 TTTTGACATAGAGGGGAGAGTAAA 57.054 37.500 0.00 0.00 0.00 2.01
3009 5809 6.945636 TTTGACATAGAGGGGAGAGTAAAA 57.054 37.500 0.00 0.00 0.00 1.52
3124 5924 9.903682 ATTCATTTCAAGTCTATTGAAGTGTTG 57.096 29.630 18.98 10.02 42.78 3.33
3138 5938 2.586425 AGTGTTGACCATGAACCTTGG 58.414 47.619 0.00 0.00 40.26 3.61
3188 5988 1.202675 GGTGGGTGTCTTACGGTGAAA 60.203 52.381 0.00 0.00 0.00 2.69
3280 6084 0.683179 GGGGTGGGTATGTTCAAGGC 60.683 60.000 0.00 0.00 0.00 4.35
3349 6153 0.110823 CCGAAGAACGTGGAAAAGCG 60.111 55.000 0.00 0.00 40.78 4.68
3426 6230 1.292223 CCCGGAAAGCTCGTCTTGA 59.708 57.895 0.73 0.00 34.67 3.02
3643 6462 2.936498 GTGGTGGATAAACCGAGTCATG 59.064 50.000 0.00 0.00 43.73 3.07
3653 6472 2.184533 ACCGAGTCATGATAACCCACA 58.815 47.619 0.00 0.00 0.00 4.17
3654 6473 2.168521 ACCGAGTCATGATAACCCACAG 59.831 50.000 0.00 0.00 0.00 3.66
3664 6483 0.542467 TAACCCACAGCGGTGTAGGA 60.542 55.000 33.69 13.67 43.71 2.94
3698 6517 4.282703 AGCCCTTTTCGACAAGTAAGAGTA 59.717 41.667 10.27 0.00 0.00 2.59
3699 6518 4.626172 GCCCTTTTCGACAAGTAAGAGTAG 59.374 45.833 10.27 0.00 0.00 2.57
3751 6572 7.362660 GGTTGATGGAAACTAATAAGGAACCAC 60.363 40.741 0.00 0.00 0.00 4.16
3753 6574 8.153221 TGATGGAAACTAATAAGGAACCACTA 57.847 34.615 0.00 0.00 0.00 2.74
3782 6603 5.693104 AGCTGCAAACATTGTTTGATAGTTG 59.307 36.000 35.02 20.91 0.00 3.16
3786 6607 6.478344 TGCAAACATTGTTTGATAGTTGGTTC 59.522 34.615 35.02 18.87 0.00 3.62
3787 6608 6.345723 GCAAACATTGTTTGATAGTTGGTTCG 60.346 38.462 35.02 12.76 0.00 3.95
3865 6687 9.740710 AGTCCTTAATAATGCTTAAAGACAAGT 57.259 29.630 7.35 0.00 35.73 3.16
3926 6748 1.798813 ACACGAGATTTTCACGAAGCC 59.201 47.619 1.49 0.00 34.62 4.35
3927 6749 2.069273 CACGAGATTTTCACGAAGCCT 58.931 47.619 1.49 0.00 34.62 4.58
3940 6762 4.690748 TCACGAAGCCTCTTTCAACTAATG 59.309 41.667 0.00 0.00 0.00 1.90
3948 6770 6.888632 AGCCTCTTTCAACTAATGTCATTGAT 59.111 34.615 8.39 0.00 32.61 2.57
4017 6839 3.998913 TTGACTAGATGACCCATTGCA 57.001 42.857 0.00 0.00 0.00 4.08
4028 6850 0.674269 CCCATTGCACCAATTGGCAC 60.674 55.000 24.79 16.63 40.23 5.01
4045 10710 1.270305 GCACAGAGACCAACTGCAGTA 60.270 52.381 22.01 0.00 38.74 2.74
4113 10778 5.601583 TGCAAATGATTATGCTCATGGTT 57.398 34.783 11.53 0.00 42.97 3.67
4114 10779 5.593968 TGCAAATGATTATGCTCATGGTTC 58.406 37.500 11.53 0.00 42.97 3.62
4139 10804 7.329962 TCGTTCTTATTTTCTTTGACGAGCATA 59.670 33.333 0.00 0.00 0.00 3.14
4160 10825 1.776667 CTTGCCCATATCTTCCCCTGA 59.223 52.381 0.00 0.00 0.00 3.86
4162 10827 1.140312 GCCCATATCTTCCCCTGACA 58.860 55.000 0.00 0.00 0.00 3.58
4183 10848 9.681692 CTGACAATTAACTTTTGATGACATGAA 57.318 29.630 0.00 0.00 0.00 2.57
4191 10856 6.732154 ACTTTTGATGACATGAAACTCTGTG 58.268 36.000 0.00 0.00 0.00 3.66
4192 10857 6.319658 ACTTTTGATGACATGAAACTCTGTGT 59.680 34.615 0.00 0.00 0.00 3.72
4218 10883 8.167392 TGTGATGGATCTTTTTCCCTAACTAAA 58.833 33.333 0.00 0.00 34.67 1.85
4222 10887 8.348285 TGGATCTTTTTCCCTAACTAAATGTG 57.652 34.615 0.00 0.00 34.67 3.21
4341 11006 4.712476 AGAACATGGAGATGACTAATGGC 58.288 43.478 0.00 0.00 33.36 4.40
4344 11009 3.457380 ACATGGAGATGACTAATGGCACT 59.543 43.478 0.00 0.00 33.36 4.40
4374 11039 1.203001 TGGGAAGGGATGTGGTTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
4375 11040 1.203001 GGGAAGGGATGTGGTTTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
4376 11041 2.557452 GGGAAGGGATGTGGTTTGTCAT 60.557 50.000 0.00 0.00 0.00 3.06
4377 11042 3.165071 GGAAGGGATGTGGTTTGTCATT 58.835 45.455 0.00 0.00 0.00 2.57
4378 11043 3.056607 GGAAGGGATGTGGTTTGTCATTG 60.057 47.826 0.00 0.00 0.00 2.82
4379 11044 2.528564 AGGGATGTGGTTTGTCATTGG 58.471 47.619 0.00 0.00 0.00 3.16
4380 11045 1.066929 GGGATGTGGTTTGTCATTGGC 60.067 52.381 0.00 0.00 0.00 4.52
4381 11046 1.895131 GGATGTGGTTTGTCATTGGCT 59.105 47.619 0.00 0.00 0.00 4.75
4382 11047 2.299867 GGATGTGGTTTGTCATTGGCTT 59.700 45.455 0.00 0.00 0.00 4.35
4383 11048 3.244181 GGATGTGGTTTGTCATTGGCTTT 60.244 43.478 0.00 0.00 0.00 3.51
4384 11049 3.902881 TGTGGTTTGTCATTGGCTTTT 57.097 38.095 0.00 0.00 0.00 2.27
4385 11050 4.213564 TGTGGTTTGTCATTGGCTTTTT 57.786 36.364 0.00 0.00 0.00 1.94
4406 11071 7.804843 TTTTTGATCAAATTTGGATGCTTGT 57.195 28.000 21.10 0.00 0.00 3.16
4407 11072 6.788684 TTTGATCAAATTTGGATGCTTGTG 57.211 33.333 16.91 0.00 0.00 3.33
4408 11073 4.823157 TGATCAAATTTGGATGCTTGTGG 58.177 39.130 17.90 0.00 0.00 4.17
4409 11074 3.681593 TCAAATTTGGATGCTTGTGGG 57.318 42.857 17.90 0.00 0.00 4.61
4410 11075 2.971330 TCAAATTTGGATGCTTGTGGGT 59.029 40.909 17.90 0.00 0.00 4.51
4411 11076 3.006752 TCAAATTTGGATGCTTGTGGGTC 59.993 43.478 17.90 0.00 0.00 4.46
4412 11077 2.307496 ATTTGGATGCTTGTGGGTCA 57.693 45.000 0.00 0.00 0.00 4.02
4413 11078 2.307496 TTTGGATGCTTGTGGGTCAT 57.693 45.000 0.00 0.00 0.00 3.06
4414 11079 2.307496 TTGGATGCTTGTGGGTCATT 57.693 45.000 0.00 0.00 0.00 2.57
4415 11080 3.448093 TTGGATGCTTGTGGGTCATTA 57.552 42.857 0.00 0.00 0.00 1.90
4416 11081 2.722094 TGGATGCTTGTGGGTCATTAC 58.278 47.619 0.00 0.00 0.00 1.89
4417 11082 1.670811 GGATGCTTGTGGGTCATTACG 59.329 52.381 0.00 0.00 0.00 3.18
4418 11083 2.627945 GATGCTTGTGGGTCATTACGA 58.372 47.619 0.00 0.00 0.00 3.43
4419 11084 2.552599 TGCTTGTGGGTCATTACGAA 57.447 45.000 0.00 0.00 0.00 3.85
4420 11085 2.422597 TGCTTGTGGGTCATTACGAAG 58.577 47.619 0.00 0.00 0.00 3.79
4422 11087 2.812011 GCTTGTGGGTCATTACGAAGTT 59.188 45.455 0.00 0.00 37.78 2.66
4423 11088 3.364964 GCTTGTGGGTCATTACGAAGTTG 60.365 47.826 0.00 0.00 37.78 3.16
4424 11089 2.773487 TGTGGGTCATTACGAAGTTGG 58.227 47.619 0.00 0.00 37.78 3.77
4425 11090 1.467342 GTGGGTCATTACGAAGTTGGC 59.533 52.381 0.00 0.00 37.78 4.52
4426 11091 1.092348 GGGTCATTACGAAGTTGGCC 58.908 55.000 0.00 0.00 41.88 5.36
4427 11092 1.612199 GGGTCATTACGAAGTTGGCCA 60.612 52.381 0.00 0.00 44.19 5.36
4428 11093 2.156098 GGTCATTACGAAGTTGGCCAA 58.844 47.619 16.05 16.05 42.16 4.52
4429 11094 2.161609 GGTCATTACGAAGTTGGCCAAG 59.838 50.000 21.21 9.93 42.16 3.61
4430 11095 3.071479 GTCATTACGAAGTTGGCCAAGA 58.929 45.455 21.21 6.28 37.78 3.02
4431 11096 3.125316 GTCATTACGAAGTTGGCCAAGAG 59.875 47.826 21.21 12.85 37.78 2.85
4432 11097 3.007506 TCATTACGAAGTTGGCCAAGAGA 59.992 43.478 21.21 0.00 37.78 3.10
4433 11098 3.695830 TTACGAAGTTGGCCAAGAGAT 57.304 42.857 21.21 5.06 37.78 2.75
4434 11099 2.100605 ACGAAGTTGGCCAAGAGATC 57.899 50.000 21.21 13.43 37.78 2.75
4435 11100 1.347707 ACGAAGTTGGCCAAGAGATCA 59.652 47.619 21.21 0.00 37.78 2.92
4436 11101 2.026822 ACGAAGTTGGCCAAGAGATCAT 60.027 45.455 21.21 0.00 37.78 2.45
4437 11102 3.012518 CGAAGTTGGCCAAGAGATCATT 58.987 45.455 21.21 5.19 0.00 2.57
4438 11103 3.064545 CGAAGTTGGCCAAGAGATCATTC 59.935 47.826 21.21 12.77 0.00 2.67
4439 11104 3.010200 AGTTGGCCAAGAGATCATTCC 57.990 47.619 21.21 2.46 0.00 3.01
4440 11105 2.579860 AGTTGGCCAAGAGATCATTCCT 59.420 45.455 21.21 5.15 0.00 3.36
4441 11106 3.782523 AGTTGGCCAAGAGATCATTCCTA 59.217 43.478 21.21 0.00 0.00 2.94
4442 11107 4.414846 AGTTGGCCAAGAGATCATTCCTAT 59.585 41.667 21.21 0.00 0.00 2.57
4443 11108 4.362470 TGGCCAAGAGATCATTCCTATG 57.638 45.455 0.61 0.00 0.00 2.23
4444 11109 3.073503 TGGCCAAGAGATCATTCCTATGG 59.926 47.826 0.61 0.00 32.40 2.74
4445 11110 3.328931 GGCCAAGAGATCATTCCTATGGA 59.671 47.826 0.00 0.00 32.40 3.41
4446 11111 4.018597 GGCCAAGAGATCATTCCTATGGAT 60.019 45.833 0.00 0.00 32.40 3.41
4447 11112 4.942483 GCCAAGAGATCATTCCTATGGATG 59.058 45.833 0.00 0.00 32.40 3.51
4448 11113 4.942483 CCAAGAGATCATTCCTATGGATGC 59.058 45.833 0.00 0.00 32.40 3.91
4449 11114 5.514310 CCAAGAGATCATTCCTATGGATGCA 60.514 44.000 0.00 0.00 32.40 3.96
4450 11115 5.837770 AGAGATCATTCCTATGGATGCAA 57.162 39.130 0.00 0.00 32.40 4.08
4451 11116 6.196918 AGAGATCATTCCTATGGATGCAAA 57.803 37.500 0.00 0.00 32.40 3.68
4452 11117 6.791371 AGAGATCATTCCTATGGATGCAAAT 58.209 36.000 0.00 0.00 32.40 2.32
4453 11118 6.659668 AGAGATCATTCCTATGGATGCAAATG 59.340 38.462 0.00 3.64 32.40 2.32
4454 11119 6.549242 AGATCATTCCTATGGATGCAAATGA 58.451 36.000 12.59 12.59 31.33 2.57
4455 11120 7.182760 AGATCATTCCTATGGATGCAAATGAT 58.817 34.615 19.01 19.01 37.37 2.45
4456 11121 6.584185 TCATTCCTATGGATGCAAATGATG 57.416 37.500 7.68 2.50 32.40 3.07
4457 11122 6.308566 TCATTCCTATGGATGCAAATGATGA 58.691 36.000 7.68 4.44 32.40 2.92
4458 11123 6.433093 TCATTCCTATGGATGCAAATGATGAG 59.567 38.462 7.68 0.00 32.40 2.90
4459 11124 5.571791 TCCTATGGATGCAAATGATGAGA 57.428 39.130 0.00 0.00 0.00 3.27
4460 11125 6.135819 TCCTATGGATGCAAATGATGAGAT 57.864 37.500 0.00 0.00 0.00 2.75
4461 11126 5.944007 TCCTATGGATGCAAATGATGAGATG 59.056 40.000 0.00 0.00 0.00 2.90
4462 11127 5.944007 CCTATGGATGCAAATGATGAGATGA 59.056 40.000 0.00 0.00 0.00 2.92
4463 11128 6.433093 CCTATGGATGCAAATGATGAGATGAA 59.567 38.462 0.00 0.00 0.00 2.57
4464 11129 6.918067 ATGGATGCAAATGATGAGATGAAT 57.082 33.333 0.00 0.00 0.00 2.57
4465 11130 6.084326 TGGATGCAAATGATGAGATGAATG 57.916 37.500 0.00 0.00 0.00 2.67
4466 11131 5.596772 TGGATGCAAATGATGAGATGAATGT 59.403 36.000 0.00 0.00 0.00 2.71
4467 11132 6.097696 TGGATGCAAATGATGAGATGAATGTT 59.902 34.615 0.00 0.00 0.00 2.71
4468 11133 6.420903 GGATGCAAATGATGAGATGAATGTTG 59.579 38.462 0.00 0.00 0.00 3.33
4469 11134 6.275494 TGCAAATGATGAGATGAATGTTGT 57.725 33.333 0.00 0.00 0.00 3.32
4470 11135 6.693466 TGCAAATGATGAGATGAATGTTGTT 58.307 32.000 0.00 0.00 0.00 2.83
4471 11136 6.809689 TGCAAATGATGAGATGAATGTTGTTC 59.190 34.615 0.00 0.00 0.00 3.18
4472 11137 7.033791 GCAAATGATGAGATGAATGTTGTTCT 58.966 34.615 0.00 0.00 0.00 3.01
4473 11138 7.220300 GCAAATGATGAGATGAATGTTGTTCTC 59.780 37.037 0.00 0.00 36.09 2.87
4474 11139 6.939132 ATGATGAGATGAATGTTGTTCTCC 57.061 37.500 0.00 0.00 34.93 3.71
4475 11140 5.807909 TGATGAGATGAATGTTGTTCTCCA 58.192 37.500 0.00 0.00 34.93 3.86
4476 11141 6.420638 TGATGAGATGAATGTTGTTCTCCAT 58.579 36.000 0.00 0.00 34.93 3.41
4477 11142 6.541278 TGATGAGATGAATGTTGTTCTCCATC 59.459 38.462 0.00 0.00 34.93 3.51
4478 11143 5.188434 TGAGATGAATGTTGTTCTCCATCC 58.812 41.667 0.00 0.00 34.93 3.51
4479 11144 5.045359 TGAGATGAATGTTGTTCTCCATCCT 60.045 40.000 0.00 0.00 34.93 3.24
4480 11145 6.156775 TGAGATGAATGTTGTTCTCCATCCTA 59.843 38.462 0.00 0.00 34.93 2.94
4481 11146 6.590068 AGATGAATGTTGTTCTCCATCCTAG 58.410 40.000 0.00 0.00 33.00 3.02
4482 11147 5.762179 TGAATGTTGTTCTCCATCCTAGT 57.238 39.130 0.00 0.00 0.00 2.57
4483 11148 5.491070 TGAATGTTGTTCTCCATCCTAGTG 58.509 41.667 0.00 0.00 0.00 2.74
4484 11149 5.013079 TGAATGTTGTTCTCCATCCTAGTGT 59.987 40.000 0.00 0.00 0.00 3.55
4485 11150 4.537135 TGTTGTTCTCCATCCTAGTGTC 57.463 45.455 0.00 0.00 0.00 3.67
4486 11151 3.901222 TGTTGTTCTCCATCCTAGTGTCA 59.099 43.478 0.00 0.00 0.00 3.58
4487 11152 4.346709 TGTTGTTCTCCATCCTAGTGTCAA 59.653 41.667 0.00 0.00 0.00 3.18
4488 11153 5.013079 TGTTGTTCTCCATCCTAGTGTCAAT 59.987 40.000 0.00 0.00 0.00 2.57
4489 11154 6.212589 TGTTGTTCTCCATCCTAGTGTCAATA 59.787 38.462 0.00 0.00 0.00 1.90
4490 11155 7.092891 TGTTGTTCTCCATCCTAGTGTCAATAT 60.093 37.037 0.00 0.00 0.00 1.28
4491 11156 7.437713 TGTTCTCCATCCTAGTGTCAATATT 57.562 36.000 0.00 0.00 0.00 1.28
4492 11157 8.547481 TGTTCTCCATCCTAGTGTCAATATTA 57.453 34.615 0.00 0.00 0.00 0.98
4493 11158 8.988060 TGTTCTCCATCCTAGTGTCAATATTAA 58.012 33.333 0.00 0.00 0.00 1.40
4494 11159 9.832445 GTTCTCCATCCTAGTGTCAATATTAAA 57.168 33.333 0.00 0.00 0.00 1.52
4514 11179 8.649973 ATTAAATCAACTTCATACTCGACCTC 57.350 34.615 0.00 0.00 0.00 3.85
4515 11180 5.661056 AATCAACTTCATACTCGACCTCA 57.339 39.130 0.00 0.00 0.00 3.86
4516 11181 5.860941 ATCAACTTCATACTCGACCTCAT 57.139 39.130 0.00 0.00 0.00 2.90
4517 11182 4.998788 TCAACTTCATACTCGACCTCATG 58.001 43.478 0.00 0.00 0.00 3.07
4518 11183 4.705023 TCAACTTCATACTCGACCTCATGA 59.295 41.667 0.00 0.00 0.00 3.07
4519 11184 4.909696 ACTTCATACTCGACCTCATGAG 57.090 45.455 16.24 16.24 38.21 2.90
4520 11185 4.527944 ACTTCATACTCGACCTCATGAGA 58.472 43.478 24.62 3.11 36.11 3.27
4521 11186 4.950475 ACTTCATACTCGACCTCATGAGAA 59.050 41.667 24.62 5.49 36.11 2.87
4522 11187 5.419155 ACTTCATACTCGACCTCATGAGAAA 59.581 40.000 24.62 5.33 36.11 2.52
4523 11188 5.914898 TCATACTCGACCTCATGAGAAAA 57.085 39.130 24.62 5.68 36.11 2.29
4524 11189 5.651530 TCATACTCGACCTCATGAGAAAAC 58.348 41.667 24.62 10.57 36.11 2.43
4525 11190 2.947852 ACTCGACCTCATGAGAAAACG 58.052 47.619 24.62 20.27 36.11 3.60
4526 11191 2.557056 ACTCGACCTCATGAGAAAACGA 59.443 45.455 24.62 22.73 36.11 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.985188 TCGAATGAAAGGTGATCCTAAAAG 57.015 37.500 0.00 0.00 44.35 2.27
18 19 5.964958 ACAACATTCGAATGAAAGGTGAT 57.035 34.783 37.75 15.22 41.79 3.06
26 27 6.708502 TCTTTACTGGAACAACATTCGAATGA 59.291 34.615 37.75 17.12 38.70 2.57
32 33 7.973944 ACAAAGTTCTTTACTGGAACAACATTC 59.026 33.333 8.86 0.00 43.67 2.67
178 179 3.655777 AGTGGTTCCAATGGGAGAAAGTA 59.344 43.478 0.00 0.00 46.01 2.24
244 245 2.226437 AGTAAAAGATGGCTTGTGCGTG 59.774 45.455 0.00 0.00 40.82 5.34
245 246 2.504367 AGTAAAAGATGGCTTGTGCGT 58.496 42.857 0.00 0.00 40.82 5.24
246 247 3.058293 TGAAGTAAAAGATGGCTTGTGCG 60.058 43.478 0.00 0.00 40.82 5.34
247 248 4.022849 ACTGAAGTAAAAGATGGCTTGTGC 60.023 41.667 0.00 0.00 33.79 4.57
355 360 7.148239 GGAATCTGTGATTACTTACCCAAACTG 60.148 40.741 0.00 0.00 0.00 3.16
361 366 7.963532 TCTATGGAATCTGTGATTACTTACCC 58.036 38.462 4.43 0.00 0.00 3.69
443 449 5.529289 AGTATTGAGTCTTGAGACCCCATA 58.471 41.667 7.50 0.00 45.85 2.74
477 483 3.780902 CACCATGTCTGCTACGTCAATA 58.219 45.455 0.00 0.00 0.00 1.90
482 488 0.034756 TTGCACCATGTCTGCTACGT 59.965 50.000 12.46 0.00 35.53 3.57
483 489 0.723414 CTTGCACCATGTCTGCTACG 59.277 55.000 12.46 0.00 35.53 3.51
484 490 1.089920 CCTTGCACCATGTCTGCTAC 58.910 55.000 12.46 0.00 35.53 3.58
489 540 1.554160 CTCTCTCCTTGCACCATGTCT 59.446 52.381 0.00 0.00 0.00 3.41
524 575 1.938577 GCTCTCCACATAGTGTGCATG 59.061 52.381 4.60 0.00 46.51 4.06
529 580 4.959210 AGTAGATTGCTCTCCACATAGTGT 59.041 41.667 0.00 0.00 32.66 3.55
531 582 5.454062 AGAGTAGATTGCTCTCCACATAGT 58.546 41.667 0.00 0.00 38.86 2.12
700 760 4.665833 ATAATGTTAGCGCTAGGTGACA 57.334 40.909 19.00 19.00 45.91 3.58
870 932 7.744087 TGCATTGATGGGTTACAGATATAAC 57.256 36.000 0.00 0.00 34.80 1.89
879 941 6.630071 ACAATAACTTGCATTGATGGGTTAC 58.370 36.000 4.06 0.00 36.95 2.50
882 944 5.011943 ACAACAATAACTTGCATTGATGGGT 59.988 36.000 10.70 0.00 39.28 4.51
955 1018 7.644490 TGTTTTGTTAATGTGTCTACCATCAC 58.356 34.615 0.00 0.00 35.43 3.06
1044 1107 1.896465 CCTCCGAGGGCTAGAATAAGG 59.104 57.143 6.53 0.00 0.00 2.69
1077 1140 7.410800 AGTATTCTCGTCTCGTCTTATACAG 57.589 40.000 0.00 0.00 0.00 2.74
1095 1158 1.421480 AAGGGACCCCGCTAGTATTC 58.579 55.000 7.00 0.00 41.95 1.75
1337 1402 9.632638 ACAATTGACTTAGCCACTATATGAATT 57.367 29.630 13.59 0.00 0.00 2.17
1506 1572 8.122952 AGAATAATTTAACAACGCTAGATGTGC 58.877 33.333 0.00 0.00 33.49 4.57
1749 1818 2.882137 TCGACAGGGATTTGGTTGAAAC 59.118 45.455 0.00 0.00 0.00 2.78
1754 1823 3.433306 TGAATCGACAGGGATTTGGTT 57.567 42.857 0.00 0.00 36.79 3.67
1765 1834 1.451927 GGCCTGGCATGAATCGACA 60.452 57.895 22.05 0.00 0.00 4.35
1836 1905 0.257328 TGGACCCTTCTGTTGTTGCA 59.743 50.000 0.00 0.00 0.00 4.08
1959 2030 8.908786 AGAACTTCAAGTGAAAGTCAATATCA 57.091 30.769 0.00 0.00 33.07 2.15
1960 2031 9.604626 CAAGAACTTCAAGTGAAAGTCAATATC 57.395 33.333 0.00 0.00 33.07 1.63
1965 2036 7.630242 ATTCAAGAACTTCAAGTGAAAGTCA 57.370 32.000 0.00 0.00 32.36 3.41
1972 2043 7.471721 TGTTGTGTATTCAAGAACTTCAAGTG 58.528 34.615 0.00 0.00 0.00 3.16
2088 2159 3.371965 TGGACTACCTTGGACCATCTAC 58.628 50.000 0.00 0.00 37.04 2.59
2248 2320 9.532697 GCATCATAACAAAAATTTGATGAACAC 57.467 29.630 15.08 3.65 43.99 3.32
2268 2340 8.692710 ACATAAGAAAGATTGACATTGCATCAT 58.307 29.630 0.00 0.00 0.00 2.45
2461 2541 7.560262 AGGCCTACTTTTTGTATCCCTTTAATC 59.440 37.037 1.29 0.00 31.58 1.75
2661 5453 9.581289 TTCTTTAATCCATCAACCTTTACAGAA 57.419 29.630 0.00 0.00 0.00 3.02
2679 5471 6.916360 TCAGGGCAAATTCTGTTCTTTAAT 57.084 33.333 0.00 0.00 33.13 1.40
2690 5482 5.047847 CACAATCATGATCAGGGCAAATTC 58.952 41.667 9.06 0.00 0.00 2.17
2917 5710 3.830178 GGTTTGGCCACCTATAAGTTTGT 59.170 43.478 3.88 0.00 37.17 2.83
3138 5938 3.450096 AGTCACCGGGTCCTAGAATAAAC 59.550 47.826 6.32 0.00 0.00 2.01
3188 5988 8.105829 TGGCCAATATCCAAAATGTATGTTTTT 58.894 29.630 0.61 0.00 0.00 1.94
3292 6096 0.102120 CCATCTGCGGAGAGTCTGAC 59.898 60.000 13.48 0.00 0.00 3.51
3349 6153 8.903820 ACAATTAGGATATTTCTTACAACTGCC 58.096 33.333 0.00 0.00 0.00 4.85
3426 6230 8.896744 CAGTATATTTTGATGAACTGGTGATGT 58.103 33.333 0.00 0.00 32.60 3.06
3643 6462 3.795022 TCCTACACCGCTGTGGGTTATC 61.795 54.545 12.44 0.00 46.76 1.75
3653 6472 1.066858 CAACAGATGTCCTACACCGCT 60.067 52.381 0.00 0.00 0.00 5.52
3654 6473 1.337823 ACAACAGATGTCCTACACCGC 60.338 52.381 0.00 0.00 37.96 5.68
3664 6483 3.074412 CGAAAAGGGCTACAACAGATGT 58.926 45.455 0.00 0.00 46.36 3.06
3698 6517 4.919510 TCCTTCTCCTCCTCAGATATCTCT 59.080 45.833 1.03 0.00 0.00 3.10
3699 6518 5.255397 TCCTTCTCCTCCTCAGATATCTC 57.745 47.826 1.03 0.00 0.00 2.75
3751 6572 8.296799 TCAAACAATGTTTGCAGCTTTTATAG 57.703 30.769 28.35 5.94 0.00 1.31
3753 6574 7.733402 ATCAAACAATGTTTGCAGCTTTTAT 57.267 28.000 28.35 14.50 0.00 1.40
3782 6603 4.504858 AGGTATGTTCTTGTGATCGAACC 58.495 43.478 8.24 0.00 38.93 3.62
3786 6607 8.642908 TGTTATAAGGTATGTTCTTGTGATCG 57.357 34.615 0.00 0.00 0.00 3.69
3865 6687 9.878667 TTTGATCAATATAAGTACTTCAACCGA 57.121 29.630 12.39 5.47 0.00 4.69
3940 6762 9.749490 CAATGCAATGAAAGTTAAATCAATGAC 57.251 29.630 0.00 1.09 29.81 3.06
3975 6797 2.465860 TAGGTTCCACCACACAATCG 57.534 50.000 0.00 0.00 41.95 3.34
4017 6839 0.478072 TGGTCTCTGTGCCAATTGGT 59.522 50.000 25.19 0.00 37.57 3.67
4028 6850 4.991153 TCTATACTGCAGTTGGTCTCTG 57.009 45.455 27.06 7.23 36.18 3.35
4086 10751 6.314152 CCATGAGCATAATCATTTGCAAACAA 59.686 34.615 15.41 5.87 41.35 2.83
4113 10778 5.464057 TGCTCGTCAAAGAAAATAAGAACGA 59.536 36.000 0.00 0.00 0.00 3.85
4114 10779 5.675970 TGCTCGTCAAAGAAAATAAGAACG 58.324 37.500 0.00 0.00 0.00 3.95
4139 10804 1.496429 CAGGGGAAGATATGGGCAAGT 59.504 52.381 0.00 0.00 0.00 3.16
4150 10815 6.369629 TCAAAAGTTAATTGTCAGGGGAAGA 58.630 36.000 0.00 0.00 0.00 2.87
4183 10848 4.630644 AAGATCCATCACACACAGAGTT 57.369 40.909 0.00 0.00 0.00 3.01
4191 10856 5.946377 AGTTAGGGAAAAAGATCCATCACAC 59.054 40.000 0.00 0.00 41.55 3.82
4192 10857 6.139679 AGTTAGGGAAAAAGATCCATCACA 57.860 37.500 0.00 0.00 41.55 3.58
4222 10887 5.841957 AGAGCCCAAATGTAATGTGATTC 57.158 39.130 0.00 0.00 31.34 2.52
4341 11006 4.094476 TCCCTTCCCAACTTACTCTAGTG 58.906 47.826 0.00 0.00 0.00 2.74
4344 11009 4.469945 CACATCCCTTCCCAACTTACTCTA 59.530 45.833 0.00 0.00 0.00 2.43
4382 11047 7.255173 CCACAAGCATCCAAATTTGATCAAAAA 60.255 33.333 23.91 3.45 33.56 1.94
4383 11048 6.205076 CCACAAGCATCCAAATTTGATCAAAA 59.795 34.615 23.91 8.39 33.56 2.44
4384 11049 5.701750 CCACAAGCATCCAAATTTGATCAAA 59.298 36.000 22.52 22.52 34.46 2.69
4385 11050 5.239351 CCACAAGCATCCAAATTTGATCAA 58.761 37.500 19.86 3.38 0.00 2.57
4386 11051 4.322877 CCCACAAGCATCCAAATTTGATCA 60.323 41.667 19.86 3.48 0.00 2.92
4387 11052 4.186159 CCCACAAGCATCCAAATTTGATC 58.814 43.478 19.86 5.46 0.00 2.92
4388 11053 3.583966 ACCCACAAGCATCCAAATTTGAT 59.416 39.130 19.86 8.30 0.00 2.57
4389 11054 2.971330 ACCCACAAGCATCCAAATTTGA 59.029 40.909 19.86 6.29 0.00 2.69
4390 11055 3.244146 TGACCCACAAGCATCCAAATTTG 60.244 43.478 11.40 11.40 0.00 2.32
4391 11056 2.971330 TGACCCACAAGCATCCAAATTT 59.029 40.909 0.00 0.00 0.00 1.82
4392 11057 2.607499 TGACCCACAAGCATCCAAATT 58.393 42.857 0.00 0.00 0.00 1.82
4393 11058 2.307496 TGACCCACAAGCATCCAAAT 57.693 45.000 0.00 0.00 0.00 2.32
4394 11059 2.307496 ATGACCCACAAGCATCCAAA 57.693 45.000 0.00 0.00 0.00 3.28
4395 11060 2.307496 AATGACCCACAAGCATCCAA 57.693 45.000 0.00 0.00 0.00 3.53
4396 11061 2.722094 GTAATGACCCACAAGCATCCA 58.278 47.619 0.00 0.00 0.00 3.41
4397 11062 1.670811 CGTAATGACCCACAAGCATCC 59.329 52.381 0.00 0.00 0.00 3.51
4398 11063 2.627945 TCGTAATGACCCACAAGCATC 58.372 47.619 0.00 0.00 0.00 3.91
4399 11064 2.779755 TCGTAATGACCCACAAGCAT 57.220 45.000 0.00 0.00 0.00 3.79
4400 11065 2.224426 ACTTCGTAATGACCCACAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
4401 11066 2.423577 ACTTCGTAATGACCCACAAGC 58.576 47.619 0.00 0.00 0.00 4.01
4402 11067 3.188460 CCAACTTCGTAATGACCCACAAG 59.812 47.826 0.00 0.00 0.00 3.16
4403 11068 3.142951 CCAACTTCGTAATGACCCACAA 58.857 45.455 0.00 0.00 0.00 3.33
4404 11069 2.773487 CCAACTTCGTAATGACCCACA 58.227 47.619 0.00 0.00 0.00 4.17
4405 11070 1.467342 GCCAACTTCGTAATGACCCAC 59.533 52.381 0.00 0.00 0.00 4.61
4406 11071 1.612199 GGCCAACTTCGTAATGACCCA 60.612 52.381 0.00 0.00 0.00 4.51
4407 11072 1.092348 GGCCAACTTCGTAATGACCC 58.908 55.000 0.00 0.00 0.00 4.46
4408 11073 1.816074 TGGCCAACTTCGTAATGACC 58.184 50.000 0.61 0.00 0.00 4.02
4409 11074 3.071479 TCTTGGCCAACTTCGTAATGAC 58.929 45.455 16.05 0.00 0.00 3.06
4410 11075 3.007506 TCTCTTGGCCAACTTCGTAATGA 59.992 43.478 16.05 6.08 0.00 2.57
4411 11076 3.334691 TCTCTTGGCCAACTTCGTAATG 58.665 45.455 16.05 1.09 0.00 1.90
4412 11077 3.695830 TCTCTTGGCCAACTTCGTAAT 57.304 42.857 16.05 0.00 0.00 1.89
4413 11078 3.007506 TGATCTCTTGGCCAACTTCGTAA 59.992 43.478 16.05 0.00 0.00 3.18
4414 11079 2.565391 TGATCTCTTGGCCAACTTCGTA 59.435 45.455 16.05 0.00 0.00 3.43
4415 11080 1.347707 TGATCTCTTGGCCAACTTCGT 59.652 47.619 16.05 0.00 0.00 3.85
4416 11081 2.099141 TGATCTCTTGGCCAACTTCG 57.901 50.000 16.05 4.90 0.00 3.79
4417 11082 3.379688 GGAATGATCTCTTGGCCAACTTC 59.620 47.826 16.05 9.45 0.00 3.01
4418 11083 3.011032 AGGAATGATCTCTTGGCCAACTT 59.989 43.478 16.05 0.00 0.00 2.66
4419 11084 2.579860 AGGAATGATCTCTTGGCCAACT 59.420 45.455 16.05 2.76 0.00 3.16
4420 11085 3.010200 AGGAATGATCTCTTGGCCAAC 57.990 47.619 16.05 4.91 0.00 3.77
4421 11086 4.446745 CCATAGGAATGATCTCTTGGCCAA 60.447 45.833 19.25 19.25 34.84 4.52
4422 11087 3.073503 CCATAGGAATGATCTCTTGGCCA 59.926 47.826 0.00 0.00 34.84 5.36
4423 11088 3.328931 TCCATAGGAATGATCTCTTGGCC 59.671 47.826 0.00 0.00 34.84 5.36
4424 11089 4.630644 TCCATAGGAATGATCTCTTGGC 57.369 45.455 0.00 0.00 34.84 4.52
4425 11090 4.942483 GCATCCATAGGAATGATCTCTTGG 59.058 45.833 0.00 0.00 34.34 3.61
4426 11091 5.557866 TGCATCCATAGGAATGATCTCTTG 58.442 41.667 0.00 0.00 34.34 3.02
4427 11092 5.837770 TGCATCCATAGGAATGATCTCTT 57.162 39.130 0.00 0.00 34.34 2.85
4428 11093 5.837770 TTGCATCCATAGGAATGATCTCT 57.162 39.130 0.00 0.00 34.34 3.10
4429 11094 6.657966 TCATTTGCATCCATAGGAATGATCTC 59.342 38.462 2.78 0.00 34.34 2.75
4430 11095 6.549242 TCATTTGCATCCATAGGAATGATCT 58.451 36.000 2.78 0.00 34.34 2.75
4431 11096 6.829229 TCATTTGCATCCATAGGAATGATC 57.171 37.500 2.78 0.00 34.34 2.92
4432 11097 6.951778 TCATCATTTGCATCCATAGGAATGAT 59.048 34.615 11.42 11.42 42.02 2.45
4433 11098 6.308566 TCATCATTTGCATCCATAGGAATGA 58.691 36.000 8.24 8.24 37.74 2.57
4434 11099 6.433093 TCTCATCATTTGCATCCATAGGAATG 59.567 38.462 0.00 0.00 34.34 2.67
4435 11100 6.549242 TCTCATCATTTGCATCCATAGGAAT 58.451 36.000 0.00 0.00 34.34 3.01
4436 11101 5.944135 TCTCATCATTTGCATCCATAGGAA 58.056 37.500 0.00 0.00 34.34 3.36
4437 11102 5.571791 TCTCATCATTTGCATCCATAGGA 57.428 39.130 0.00 0.00 35.55 2.94
4438 11103 5.944007 TCATCTCATCATTTGCATCCATAGG 59.056 40.000 0.00 0.00 0.00 2.57
4439 11104 7.448748 TTCATCTCATCATTTGCATCCATAG 57.551 36.000 0.00 0.00 0.00 2.23
4440 11105 7.450323 ACATTCATCTCATCATTTGCATCCATA 59.550 33.333 0.00 0.00 0.00 2.74
4441 11106 6.267699 ACATTCATCTCATCATTTGCATCCAT 59.732 34.615 0.00 0.00 0.00 3.41
4442 11107 5.596772 ACATTCATCTCATCATTTGCATCCA 59.403 36.000 0.00 0.00 0.00 3.41
4443 11108 6.085555 ACATTCATCTCATCATTTGCATCC 57.914 37.500 0.00 0.00 0.00 3.51
4444 11109 6.978659 ACAACATTCATCTCATCATTTGCATC 59.021 34.615 0.00 0.00 0.00 3.91
4445 11110 6.873997 ACAACATTCATCTCATCATTTGCAT 58.126 32.000 0.00 0.00 0.00 3.96
4446 11111 6.275494 ACAACATTCATCTCATCATTTGCA 57.725 33.333 0.00 0.00 0.00 4.08
4447 11112 7.033791 AGAACAACATTCATCTCATCATTTGC 58.966 34.615 0.00 0.00 0.00 3.68
4448 11113 7.701078 GGAGAACAACATTCATCTCATCATTTG 59.299 37.037 4.27 0.00 40.02 2.32
4449 11114 7.395206 TGGAGAACAACATTCATCTCATCATTT 59.605 33.333 4.27 0.00 40.02 2.32
4450 11115 6.888088 TGGAGAACAACATTCATCTCATCATT 59.112 34.615 4.27 0.00 40.02 2.57
4451 11116 6.420638 TGGAGAACAACATTCATCTCATCAT 58.579 36.000 4.27 0.00 40.02 2.45
4452 11117 5.807909 TGGAGAACAACATTCATCTCATCA 58.192 37.500 4.27 0.00 40.02 3.07
4453 11118 6.017275 GGATGGAGAACAACATTCATCTCATC 60.017 42.308 4.27 0.00 40.02 2.92
4454 11119 5.826737 GGATGGAGAACAACATTCATCTCAT 59.173 40.000 4.27 0.00 40.02 2.90
4455 11120 5.045359 AGGATGGAGAACAACATTCATCTCA 60.045 40.000 4.27 0.00 40.02 3.27
4456 11121 5.435291 AGGATGGAGAACAACATTCATCTC 58.565 41.667 0.00 0.00 38.04 2.75
4457 11122 5.447778 AGGATGGAGAACAACATTCATCT 57.552 39.130 0.00 0.00 33.59 2.90
4458 11123 6.259608 CACTAGGATGGAGAACAACATTCATC 59.740 42.308 0.00 0.00 0.00 2.92
4459 11124 6.118170 CACTAGGATGGAGAACAACATTCAT 58.882 40.000 0.00 0.00 0.00 2.57
4460 11125 5.013079 ACACTAGGATGGAGAACAACATTCA 59.987 40.000 0.00 0.00 0.00 2.57
4461 11126 5.491982 ACACTAGGATGGAGAACAACATTC 58.508 41.667 0.00 0.00 0.00 2.67
4462 11127 5.013079 TGACACTAGGATGGAGAACAACATT 59.987 40.000 0.00 0.00 0.00 2.71
4463 11128 4.532126 TGACACTAGGATGGAGAACAACAT 59.468 41.667 0.00 0.00 0.00 2.71
4464 11129 3.901222 TGACACTAGGATGGAGAACAACA 59.099 43.478 0.00 0.00 0.00 3.33
4465 11130 4.537135 TGACACTAGGATGGAGAACAAC 57.463 45.455 0.00 0.00 0.00 3.32
4466 11131 5.762179 ATTGACACTAGGATGGAGAACAA 57.238 39.130 0.00 0.00 0.00 2.83
4467 11132 7.437713 AATATTGACACTAGGATGGAGAACA 57.562 36.000 0.00 0.00 0.00 3.18
4468 11133 9.832445 TTTAATATTGACACTAGGATGGAGAAC 57.168 33.333 0.00 0.00 0.00 3.01
4488 11153 9.745880 GAGGTCGAGTATGAAGTTGATTTAATA 57.254 33.333 0.00 0.00 0.00 0.98
4489 11154 8.258007 TGAGGTCGAGTATGAAGTTGATTTAAT 58.742 33.333 0.00 0.00 0.00 1.40
4490 11155 7.608153 TGAGGTCGAGTATGAAGTTGATTTAA 58.392 34.615 0.00 0.00 0.00 1.52
4491 11156 7.165460 TGAGGTCGAGTATGAAGTTGATTTA 57.835 36.000 0.00 0.00 0.00 1.40
4492 11157 6.037786 TGAGGTCGAGTATGAAGTTGATTT 57.962 37.500 0.00 0.00 0.00 2.17
4493 11158 5.661056 TGAGGTCGAGTATGAAGTTGATT 57.339 39.130 0.00 0.00 0.00 2.57
4494 11159 5.360999 TCATGAGGTCGAGTATGAAGTTGAT 59.639 40.000 0.00 0.00 0.00 2.57
4495 11160 4.705023 TCATGAGGTCGAGTATGAAGTTGA 59.295 41.667 0.00 0.00 0.00 3.18
4496 11161 4.998788 TCATGAGGTCGAGTATGAAGTTG 58.001 43.478 0.00 0.00 0.00 3.16
4497 11162 4.950475 TCTCATGAGGTCGAGTATGAAGTT 59.050 41.667 22.42 0.00 0.00 2.66
4498 11163 4.527944 TCTCATGAGGTCGAGTATGAAGT 58.472 43.478 22.42 0.00 0.00 3.01
4499 11164 5.506686 TTCTCATGAGGTCGAGTATGAAG 57.493 43.478 22.42 0.00 0.00 3.02
4500 11165 5.914898 TTTCTCATGAGGTCGAGTATGAA 57.085 39.130 22.42 2.89 0.00 2.57
4501 11166 5.651530 GTTTTCTCATGAGGTCGAGTATGA 58.348 41.667 22.42 0.00 0.00 2.15
4502 11167 4.500837 CGTTTTCTCATGAGGTCGAGTATG 59.499 45.833 22.42 3.88 0.00 2.39
4503 11168 4.398358 TCGTTTTCTCATGAGGTCGAGTAT 59.602 41.667 22.42 0.00 0.00 2.12
4504 11169 3.754850 TCGTTTTCTCATGAGGTCGAGTA 59.245 43.478 22.42 0.00 0.00 2.59
4505 11170 2.557056 TCGTTTTCTCATGAGGTCGAGT 59.443 45.455 22.42 0.00 0.00 4.18
4506 11171 3.217599 TCGTTTTCTCATGAGGTCGAG 57.782 47.619 22.42 11.57 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.