Multiple sequence alignment - TraesCS6B01G391200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G391200 chr6B 100.000 6235 0 0 1 6235 665517288 665511054 0.000000e+00 11514
1 TraesCS6B01G391200 chr6B 95.192 104 4 1 2532 2634 529769697 529769800 5.000000e-36 163
2 TraesCS6B01G391200 chr6B 93.333 105 7 0 2535 2639 424084091 424084195 8.370000e-34 156
3 TraesCS6B01G391200 chr6B 93.333 105 7 0 2535 2639 424306789 424306893 8.370000e-34 156
4 TraesCS6B01G391200 chr6A 92.512 3018 162 35 2637 5620 588462305 588459318 0.000000e+00 4263
5 TraesCS6B01G391200 chr6A 90.753 1568 93 21 984 2537 588463839 588462310 0.000000e+00 2045
6 TraesCS6B01G391200 chr6A 89.331 628 36 13 5637 6235 588459263 588458638 0.000000e+00 760
7 TraesCS6B01G391200 chr6A 90.647 417 33 2 1 411 588464915 588464499 3.290000e-152 549
8 TraesCS6B01G391200 chr6A 86.580 462 39 14 411 869 588464536 588464095 7.260000e-134 488
9 TraesCS6B01G391200 chr6D 90.367 2803 160 34 2637 5409 440370288 440367566 0.000000e+00 3579
10 TraesCS6B01G391200 chr6D 90.892 1087 64 15 1462 2537 440371355 440370293 0.000000e+00 1426
11 TraesCS6B01G391200 chr6D 95.102 490 19 3 5454 5942 440367561 440367076 0.000000e+00 767
12 TraesCS6B01G391200 chr6D 90.832 469 27 6 984 1440 440371867 440371403 1.150000e-171 614
13 TraesCS6B01G391200 chr6D 88.184 457 30 14 415 868 440372414 440371979 1.990000e-144 523
14 TraesCS6B01G391200 chr6D 92.473 372 18 4 3 368 440372777 440372410 1.990000e-144 523
15 TraesCS6B01G391200 chr6D 95.238 294 11 1 5945 6235 440367046 440366753 4.400000e-126 462
16 TraesCS6B01G391200 chr3D 86.966 2340 208 50 2615 4901 346822153 346824448 0.000000e+00 2542
17 TraesCS6B01G391200 chr3D 87.759 580 57 8 1966 2537 346821596 346822169 0.000000e+00 665
18 TraesCS6B01G391200 chr3D 85.000 140 9 8 1822 1961 346821521 346821648 1.410000e-26 132
19 TraesCS6B01G391200 chr3A 85.878 1133 95 16 3180 4294 456908541 456907456 0.000000e+00 1146
20 TraesCS6B01G391200 chr3A 82.437 837 97 31 1153 1959 456910594 456909778 0.000000e+00 686
21 TraesCS6B01G391200 chr3A 85.814 571 64 10 2627 3195 456909258 456908703 1.940000e-164 590
22 TraesCS6B01G391200 chr3A 85.612 556 64 11 1992 2537 456909803 456909254 2.520000e-158 569
23 TraesCS6B01G391200 chr3A 93.396 106 6 1 2528 2633 579367393 579367497 8.370000e-34 156
24 TraesCS6B01G391200 chr4D 80.049 411 66 9 2091 2497 273541056 273541454 2.200000e-74 291
25 TraesCS6B01G391200 chr1D 96.078 102 4 0 2534 2635 483907680 483907579 3.870000e-37 167
26 TraesCS6B01G391200 chr1D 94.059 101 6 0 2536 2636 420554542 420554642 3.010000e-33 154
27 TraesCS6B01G391200 chr5D 94.286 105 6 0 2534 2638 205794744 205794640 1.800000e-35 161
28 TraesCS6B01G391200 chr4B 95.960 99 4 0 2534 2632 588430321 588430419 1.800000e-35 161
29 TraesCS6B01G391200 chr2B 95.098 102 5 0 2534 2635 743692997 743692896 1.800000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G391200 chr6B 665511054 665517288 6234 True 11514.000000 11514 100.000000 1 6235 1 chr6B.!!$R1 6234
1 TraesCS6B01G391200 chr6A 588458638 588464915 6277 True 1621.000000 4263 89.964600 1 6235 5 chr6A.!!$R1 6234
2 TraesCS6B01G391200 chr6D 440366753 440372777 6024 True 1127.714286 3579 91.869714 3 6235 7 chr6D.!!$R1 6232
3 TraesCS6B01G391200 chr3D 346821521 346824448 2927 False 1113.000000 2542 86.575000 1822 4901 3 chr3D.!!$F1 3079
4 TraesCS6B01G391200 chr3A 456907456 456910594 3138 True 747.750000 1146 84.935250 1153 4294 4 chr3A.!!$R1 3141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 882 0.109919 CGTGCACGTGAGCTAGTACA 60.110 55.0 30.50 1.36 34.99 2.90 F
891 981 0.250234 CAAGCTTCGACCCATCCTCA 59.750 55.0 0.00 0.00 0.00 3.86 F
2156 2371 0.324943 CGGTTGGTCAGTCCTCCATT 59.675 55.0 0.00 0.00 37.07 3.16 F
2550 2785 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.0 4.17 0.00 0.00 4.37 F
3482 3933 0.811281 GGCTATTGTGAACTGTGCCC 59.189 55.0 0.00 0.00 33.45 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2757 2995 0.310543 GCAACACTCGCATGGTTTCA 59.689 50.000 0.0 0.0 0.0 2.69 R
2758 2996 0.387239 GGCAACACTCGCATGGTTTC 60.387 55.000 0.0 0.0 0.0 2.78 R
3482 3933 1.396301 GCAAGGAGAATGAGAACGCAG 59.604 52.381 0.0 0.0 0.0 5.18 R
4405 4871 2.225382 TCGTCCATAAGTCCTGACCA 57.775 50.000 0.0 0.0 0.0 4.02 R
5357 5867 0.734253 CCTCGGAGCGTCAAGAACTG 60.734 60.000 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.632409 ACACCATGCATCCTCAAGAGT 59.368 47.619 0.00 0.00 0.00 3.24
70 71 2.046023 CCGGAGCATGAAGGCACA 60.046 61.111 0.00 0.00 35.83 4.57
113 114 2.547211 CTGAGGGAAATTAGCTGATGCG 59.453 50.000 0.00 0.00 45.42 4.73
153 154 4.334552 TGCATGGAGCTGATTTCAACTAA 58.665 39.130 0.00 0.00 45.94 2.24
155 156 5.163591 TGCATGGAGCTGATTTCAACTAATG 60.164 40.000 0.00 3.47 45.94 1.90
172 173 6.489127 ACTAATGCGTGCAAGTTGTAATTA 57.511 33.333 4.48 1.22 0.00 1.40
175 176 8.120465 ACTAATGCGTGCAAGTTGTAATTATAC 58.880 33.333 4.48 0.00 0.00 1.47
179 180 5.277154 GCGTGCAAGTTGTAATTATACCGAT 60.277 40.000 4.48 0.00 0.00 4.18
181 182 6.019398 CGTGCAAGTTGTAATTATACCGATCA 60.019 38.462 4.48 0.00 0.00 2.92
244 250 4.188462 CAAATCATAACCCTAGTGTGCGA 58.812 43.478 0.00 0.00 0.00 5.10
373 381 0.179132 GCATTGCCGCATTGACATGA 60.179 50.000 17.39 0.00 31.07 3.07
374 382 1.736364 GCATTGCCGCATTGACATGAA 60.736 47.619 17.39 0.00 31.07 2.57
375 383 2.816689 CATTGCCGCATTGACATGAAT 58.183 42.857 9.23 0.00 31.07 2.57
376 384 2.281140 TTGCCGCATTGACATGAATG 57.719 45.000 0.00 0.71 36.55 2.67
385 393 3.763097 TTGACATGAATGCATTCGTCC 57.237 42.857 29.18 23.55 39.62 4.79
386 394 2.989909 TGACATGAATGCATTCGTCCT 58.010 42.857 29.18 19.91 39.62 3.85
387 395 3.346315 TGACATGAATGCATTCGTCCTT 58.654 40.909 29.18 19.31 39.62 3.36
388 396 3.758023 TGACATGAATGCATTCGTCCTTT 59.242 39.130 29.18 17.48 39.62 3.11
389 397 4.940654 TGACATGAATGCATTCGTCCTTTA 59.059 37.500 29.18 16.46 39.62 1.85
390 398 5.065090 TGACATGAATGCATTCGTCCTTTAG 59.935 40.000 29.18 20.96 39.62 1.85
391 399 4.943705 ACATGAATGCATTCGTCCTTTAGT 59.056 37.500 27.52 19.10 39.62 2.24
392 400 6.112734 ACATGAATGCATTCGTCCTTTAGTA 58.887 36.000 27.52 10.62 39.62 1.82
393 401 6.258727 ACATGAATGCATTCGTCCTTTAGTAG 59.741 38.462 27.52 16.70 39.62 2.57
394 402 5.972935 TGAATGCATTCGTCCTTTAGTAGA 58.027 37.500 29.23 8.72 39.62 2.59
395 403 6.582636 TGAATGCATTCGTCCTTTAGTAGAT 58.417 36.000 29.23 0.00 39.62 1.98
396 404 6.479990 TGAATGCATTCGTCCTTTAGTAGATG 59.520 38.462 29.23 0.00 39.62 2.90
397 405 5.592104 TGCATTCGTCCTTTAGTAGATGA 57.408 39.130 0.00 0.00 0.00 2.92
398 406 5.972935 TGCATTCGTCCTTTAGTAGATGAA 58.027 37.500 0.00 0.00 41.08 2.57
399 407 6.582636 TGCATTCGTCCTTTAGTAGATGAAT 58.417 36.000 2.41 2.41 45.31 2.57
400 408 7.722363 TGCATTCGTCCTTTAGTAGATGAATA 58.278 34.615 7.04 0.00 43.55 1.75
401 409 7.867909 TGCATTCGTCCTTTAGTAGATGAATAG 59.132 37.037 7.04 4.52 43.55 1.73
402 410 7.148722 GCATTCGTCCTTTAGTAGATGAATAGC 60.149 40.741 7.04 9.13 43.55 2.97
403 411 7.584122 TTCGTCCTTTAGTAGATGAATAGCT 57.416 36.000 0.00 0.00 34.02 3.32
404 412 8.687292 TTCGTCCTTTAGTAGATGAATAGCTA 57.313 34.615 0.00 0.00 34.02 3.32
405 413 8.687292 TCGTCCTTTAGTAGATGAATAGCTAA 57.313 34.615 0.00 0.00 0.00 3.09
406 414 8.784994 TCGTCCTTTAGTAGATGAATAGCTAAG 58.215 37.037 0.00 0.00 0.00 2.18
407 415 8.784994 CGTCCTTTAGTAGATGAATAGCTAAGA 58.215 37.037 0.00 0.00 0.00 2.10
409 417 8.798402 TCCTTTAGTAGATGAATAGCTAAGAGC 58.202 37.037 0.00 0.00 42.84 4.09
446 454 8.280084 TCCTTTAGTAGGTGAATAGCTAAGAGA 58.720 37.037 0.00 0.00 45.03 3.10
466 474 1.839424 ACCTTGGTTATGAGCTTGGC 58.161 50.000 0.00 0.00 0.00 4.52
472 480 1.686115 GGTTATGAGCTTGGCCCATGT 60.686 52.381 0.00 0.00 0.00 3.21
474 482 3.287222 GTTATGAGCTTGGCCCATGTAA 58.713 45.455 0.00 0.00 0.00 2.41
595 603 6.262601 CAAGATTTCTCGTAGTCCTCTTCTC 58.737 44.000 0.00 0.00 0.00 2.87
607 615 0.179150 CTCTTCTCGAACTCGGGCAG 60.179 60.000 0.00 0.00 40.23 4.85
620 628 1.073125 TCGGGCAGTTTCCAATCTCAA 59.927 47.619 0.00 0.00 0.00 3.02
626 634 3.365364 GCAGTTTCCAATCTCAAACTCGG 60.365 47.826 0.00 0.00 40.19 4.63
700 708 6.959639 TTTTCCTTTTTCATAGTGACTGCT 57.040 33.333 0.00 0.00 0.00 4.24
701 709 6.959639 TTTCCTTTTTCATAGTGACTGCTT 57.040 33.333 0.00 0.00 0.00 3.91
702 710 5.947228 TCCTTTTTCATAGTGACTGCTTG 57.053 39.130 0.00 0.00 0.00 4.01
703 711 5.376625 TCCTTTTTCATAGTGACTGCTTGT 58.623 37.500 0.00 0.00 0.00 3.16
704 712 5.827797 TCCTTTTTCATAGTGACTGCTTGTT 59.172 36.000 0.00 0.00 0.00 2.83
705 713 6.321181 TCCTTTTTCATAGTGACTGCTTGTTT 59.679 34.615 0.00 0.00 0.00 2.83
706 714 6.638468 CCTTTTTCATAGTGACTGCTTGTTTC 59.362 38.462 0.00 0.00 0.00 2.78
707 715 6.942532 TTTTCATAGTGACTGCTTGTTTCT 57.057 33.333 0.00 0.00 0.00 2.52
708 716 6.942532 TTTCATAGTGACTGCTTGTTTCTT 57.057 33.333 0.00 0.00 0.00 2.52
709 717 5.929697 TCATAGTGACTGCTTGTTTCTTG 57.070 39.130 0.00 0.00 0.00 3.02
710 718 4.756642 TCATAGTGACTGCTTGTTTCTTGG 59.243 41.667 0.00 0.00 0.00 3.61
711 719 3.004752 AGTGACTGCTTGTTTCTTGGT 57.995 42.857 0.00 0.00 0.00 3.67
712 720 4.150897 AGTGACTGCTTGTTTCTTGGTA 57.849 40.909 0.00 0.00 0.00 3.25
715 723 5.034797 GTGACTGCTTGTTTCTTGGTAAAC 58.965 41.667 0.00 0.00 39.35 2.01
744 752 3.133721 TGGCTGCTGGTTACAAAATTGTT 59.866 39.130 3.85 0.00 42.35 2.83
746 754 4.501400 GGCTGCTGGTTACAAAATTGTTCT 60.501 41.667 3.85 0.00 42.35 3.01
749 757 6.079424 TGCTGGTTACAAAATTGTTCTACC 57.921 37.500 3.85 10.09 42.35 3.18
750 758 5.594725 TGCTGGTTACAAAATTGTTCTACCA 59.405 36.000 18.36 18.36 42.35 3.25
801 810 9.698309 TGTTTGAAACAAATTGTTCACTCTTTA 57.302 25.926 12.11 0.00 40.14 1.85
818 827 3.818210 TCTTTATTTTCTCAAGGCGCACA 59.182 39.130 10.83 0.00 0.00 4.57
819 828 4.458989 TCTTTATTTTCTCAAGGCGCACAT 59.541 37.500 10.83 0.00 0.00 3.21
821 830 1.317613 TTTTCTCAAGGCGCACATGT 58.682 45.000 10.83 0.00 0.00 3.21
831 840 1.395608 GGCGCACATGTACGTACAAAT 59.604 47.619 30.46 19.02 39.99 2.32
832 841 2.536130 GGCGCACATGTACGTACAAATC 60.536 50.000 30.46 18.19 39.99 2.17
834 843 2.284798 CGCACATGTACGTACAAATCCG 60.285 50.000 30.46 24.15 39.99 4.18
835 844 2.536130 GCACATGTACGTACAAATCCGC 60.536 50.000 30.46 22.72 39.99 5.54
836 845 2.668945 CACATGTACGTACAAATCCGCA 59.331 45.455 30.46 6.60 39.99 5.69
837 846 2.927477 ACATGTACGTACAAATCCGCAG 59.073 45.455 30.46 15.09 39.99 5.18
838 847 3.183754 CATGTACGTACAAATCCGCAGA 58.816 45.455 30.46 5.03 39.99 4.26
843 852 4.141855 ACGTACAAATCCGCAGAAAAAG 57.858 40.909 0.00 0.00 0.00 2.27
872 881 2.638329 CGTGCACGTGAGCTAGTAC 58.362 57.895 30.50 0.00 34.99 2.73
873 882 0.109919 CGTGCACGTGAGCTAGTACA 60.110 55.000 30.50 1.36 34.99 2.90
874 883 1.664874 CGTGCACGTGAGCTAGTACAA 60.665 52.381 30.50 0.00 34.99 2.41
885 975 1.203994 GCTAGTACAAGCTTCGACCCA 59.796 52.381 0.00 0.00 39.50 4.51
891 981 0.250234 CAAGCTTCGACCCATCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
892 982 0.539051 AAGCTTCGACCCATCCTCAG 59.461 55.000 0.00 0.00 0.00 3.35
902 992 1.002134 CATCCTCAGGGCGTGGTTT 60.002 57.895 7.42 0.00 0.00 3.27
931 1060 1.691823 CCCCTTGGTCTTTCCCCTC 59.308 63.158 0.00 0.00 34.77 4.30
938 1067 1.064825 GGTCTTTCCCCTCTTCACCA 58.935 55.000 0.00 0.00 0.00 4.17
940 1069 1.700186 GTCTTTCCCCTCTTCACCAGT 59.300 52.381 0.00 0.00 0.00 4.00
941 1070 2.904434 GTCTTTCCCCTCTTCACCAGTA 59.096 50.000 0.00 0.00 0.00 2.74
945 1074 2.257207 TCCCCTCTTCACCAGTACTTG 58.743 52.381 0.00 0.00 0.00 3.16
946 1075 1.978580 CCCCTCTTCACCAGTACTTGT 59.021 52.381 0.00 0.00 0.00 3.16
950 1079 3.367087 CCTCTTCACCAGTACTTGTACCG 60.367 52.174 0.00 0.00 0.00 4.02
993 1144 2.052047 AACCGCCACCTGTACAGCTT 62.052 55.000 17.86 3.29 0.00 3.74
994 1145 2.034879 CCGCCACCTGTACAGCTTG 61.035 63.158 17.86 15.20 0.00 4.01
998 1149 0.593128 CCACCTGTACAGCTTGTTGC 59.407 55.000 17.86 0.00 43.29 4.17
1103 1262 3.707189 TCCCTTCCCTCCTCCCCC 61.707 72.222 0.00 0.00 0.00 5.40
1148 1307 2.684735 GACTCCTCCCCCGTCTCT 59.315 66.667 0.00 0.00 0.00 3.10
1358 1523 5.147162 GTGCAGTATTTTGTGCTCAGTTAC 58.853 41.667 0.00 0.00 40.54 2.50
1453 1650 4.810790 TCTTGTGCTGCTACTAGAAGTTC 58.189 43.478 0.00 0.00 31.25 3.01
1454 1651 4.524714 TCTTGTGCTGCTACTAGAAGTTCT 59.475 41.667 10.87 10.87 31.25 3.01
1455 1652 5.710567 TCTTGTGCTGCTACTAGAAGTTCTA 59.289 40.000 12.05 12.05 31.25 2.10
1456 1653 6.378564 TCTTGTGCTGCTACTAGAAGTTCTAT 59.621 38.462 12.98 6.58 31.25 1.98
1457 1654 5.895928 TGTGCTGCTACTAGAAGTTCTATG 58.104 41.667 12.98 9.71 0.00 2.23
1504 1704 4.747540 TGTTCAATGTCATGTGCACTAC 57.252 40.909 19.41 13.70 0.00 2.73
1587 1787 2.034053 TGCCCTTTTAACTCTGCAAACG 59.966 45.455 0.00 0.00 0.00 3.60
1611 1816 7.648510 ACGTCTTAGAAAATACTAGTAGCATGC 59.351 37.037 10.51 10.51 0.00 4.06
1719 1924 1.002315 ACATGGCTGGAAACAATTGGC 59.998 47.619 10.83 1.89 42.06 4.52
1761 1966 5.105432 GGATATCTGTATTAACTCCCCGACC 60.105 48.000 2.05 0.00 0.00 4.79
1963 2175 8.868522 TCTTATTCCAGCAATTTATCCATAGG 57.131 34.615 0.00 0.00 0.00 2.57
1986 2198 5.163581 GGAAAACTGATGCATGCTGTTCTAT 60.164 40.000 20.33 1.92 0.00 1.98
1994 2206 4.301628 TGCATGCTGTTCTATATCGTCAG 58.698 43.478 20.33 0.00 0.00 3.51
2060 2273 6.713762 TCATGACAAAATGGAAGTGTCTTT 57.286 33.333 0.00 0.00 41.80 2.52
2101 2316 7.342026 ACTTCAGGTTAAAGAGGTTTTTGATGT 59.658 33.333 0.00 0.00 0.00 3.06
2147 2362 3.181367 GCATCAGCGGTTGGTCAG 58.819 61.111 0.00 0.00 0.00 3.51
2150 2365 1.021390 CATCAGCGGTTGGTCAGTCC 61.021 60.000 0.00 0.00 0.00 3.85
2156 2371 0.324943 CGGTTGGTCAGTCCTCCATT 59.675 55.000 0.00 0.00 37.07 3.16
2172 2387 3.619419 TCCATTGCGGATGAAATCTCAA 58.381 40.909 1.75 0.00 44.71 3.02
2210 2425 3.119849 CCAAACAAGAGCTTTACCCATCG 60.120 47.826 0.00 0.00 0.00 3.84
2303 2518 8.383947 AGATTGATGGATCATATCAACATGACT 58.616 33.333 20.33 13.85 44.57 3.41
2345 2560 5.440610 CATCTTCAATACCTGGTAGGCTTT 58.559 41.667 12.78 0.00 39.63 3.51
2374 2589 5.559148 ACAGTCTCTGTTTCCTCTTTCAT 57.441 39.130 0.00 0.00 42.59 2.57
2378 2593 5.046663 AGTCTCTGTTTCCTCTTTCATCTCC 60.047 44.000 0.00 0.00 0.00 3.71
2379 2594 4.840680 TCTCTGTTTCCTCTTTCATCTCCA 59.159 41.667 0.00 0.00 0.00 3.86
2380 2595 5.307976 TCTCTGTTTCCTCTTTCATCTCCAA 59.692 40.000 0.00 0.00 0.00 3.53
2381 2596 5.940617 TCTGTTTCCTCTTTCATCTCCAAA 58.059 37.500 0.00 0.00 0.00 3.28
2517 2752 4.220163 TGTCAAACATTATGCTGGCAATGA 59.780 37.500 12.40 2.16 36.00 2.57
2537 2772 7.305474 CAATGAGTTTGGACCAAAGTGTATAC 58.695 38.462 28.24 15.46 37.16 1.47
2538 2773 6.182507 TGAGTTTGGACCAAAGTGTATACT 57.817 37.500 28.24 16.91 37.16 2.12
2539 2774 6.228258 TGAGTTTGGACCAAAGTGTATACTC 58.772 40.000 28.24 23.31 37.16 2.59
2540 2775 5.557866 AGTTTGGACCAAAGTGTATACTCC 58.442 41.667 23.73 7.49 35.92 3.85
2541 2776 4.563140 TTGGACCAAAGTGTATACTCCC 57.437 45.455 3.84 0.00 35.69 4.30
2542 2777 3.798515 TGGACCAAAGTGTATACTCCCT 58.201 45.455 4.17 0.00 35.69 4.20
2543 2778 3.773119 TGGACCAAAGTGTATACTCCCTC 59.227 47.826 4.17 0.00 35.69 4.30
2544 2779 3.134262 GGACCAAAGTGTATACTCCCTCC 59.866 52.174 4.17 0.00 35.69 4.30
2545 2780 2.764572 ACCAAAGTGTATACTCCCTCCG 59.235 50.000 4.17 0.00 35.69 4.63
2546 2781 2.764572 CCAAAGTGTATACTCCCTCCGT 59.235 50.000 4.17 0.00 35.69 4.69
2547 2782 3.181478 CCAAAGTGTATACTCCCTCCGTC 60.181 52.174 4.17 0.00 35.69 4.79
2548 2783 2.361643 AGTGTATACTCCCTCCGTCC 57.638 55.000 4.17 0.00 28.79 4.79
2549 2784 1.133544 AGTGTATACTCCCTCCGTCCC 60.134 57.143 4.17 0.00 28.79 4.46
2550 2785 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.000 4.17 0.00 0.00 4.37
2551 2786 1.288633 TGTATACTCCCTCCGTCCCAA 59.711 52.381 4.17 0.00 0.00 4.12
2552 2787 2.292389 TGTATACTCCCTCCGTCCCAAA 60.292 50.000 4.17 0.00 0.00 3.28
2553 2788 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2554 2789 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2555 2790 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2556 2791 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2557 2792 2.645797 ACTCCCTCCGTCCCAAAATAAA 59.354 45.455 0.00 0.00 0.00 1.40
2558 2793 3.268595 ACTCCCTCCGTCCCAAAATAAAT 59.731 43.478 0.00 0.00 0.00 1.40
2559 2794 3.626930 TCCCTCCGTCCCAAAATAAATG 58.373 45.455 0.00 0.00 0.00 2.32
2560 2795 3.010808 TCCCTCCGTCCCAAAATAAATGT 59.989 43.478 0.00 0.00 0.00 2.71
2561 2796 3.380320 CCCTCCGTCCCAAAATAAATGTC 59.620 47.826 0.00 0.00 0.00 3.06
2562 2797 4.270008 CCTCCGTCCCAAAATAAATGTCT 58.730 43.478 0.00 0.00 0.00 3.41
2563 2798 4.335594 CCTCCGTCCCAAAATAAATGTCTC 59.664 45.833 0.00 0.00 0.00 3.36
2564 2799 4.912586 TCCGTCCCAAAATAAATGTCTCA 58.087 39.130 0.00 0.00 0.00 3.27
2565 2800 5.317808 TCCGTCCCAAAATAAATGTCTCAA 58.682 37.500 0.00 0.00 0.00 3.02
2566 2801 5.414454 TCCGTCCCAAAATAAATGTCTCAAG 59.586 40.000 0.00 0.00 0.00 3.02
2567 2802 5.095490 CGTCCCAAAATAAATGTCTCAAGC 58.905 41.667 0.00 0.00 0.00 4.01
2568 2803 5.106157 CGTCCCAAAATAAATGTCTCAAGCT 60.106 40.000 0.00 0.00 0.00 3.74
2569 2804 6.570378 CGTCCCAAAATAAATGTCTCAAGCTT 60.570 38.462 0.00 0.00 0.00 3.74
2570 2805 7.361713 CGTCCCAAAATAAATGTCTCAAGCTTA 60.362 37.037 0.00 0.00 0.00 3.09
2571 2806 7.970614 GTCCCAAAATAAATGTCTCAAGCTTAG 59.029 37.037 0.00 0.00 0.00 2.18
2572 2807 7.669722 TCCCAAAATAAATGTCTCAAGCTTAGT 59.330 33.333 0.00 0.00 0.00 2.24
2573 2808 8.956426 CCCAAAATAAATGTCTCAAGCTTAGTA 58.044 33.333 0.00 0.00 0.00 1.82
2574 2809 9.774742 CCAAAATAAATGTCTCAAGCTTAGTAC 57.225 33.333 0.00 0.00 0.00 2.73
2581 2816 9.683069 AAATGTCTCAAGCTTAGTACAATTTTG 57.317 29.630 0.00 0.00 0.00 2.44
2582 2817 7.801716 TGTCTCAAGCTTAGTACAATTTTGT 57.198 32.000 0.00 1.08 44.86 2.83
2583 2818 8.896320 TGTCTCAAGCTTAGTACAATTTTGTA 57.104 30.769 0.00 0.00 42.35 2.41
2608 2843 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
2609 2844 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
2610 2845 4.884247 AGCTAGTACAAAGTTGAGACACC 58.116 43.478 0.00 0.00 0.00 4.16
2611 2846 4.589374 AGCTAGTACAAAGTTGAGACACCT 59.411 41.667 0.00 0.00 0.00 4.00
2612 2847 5.773680 AGCTAGTACAAAGTTGAGACACCTA 59.226 40.000 0.00 0.00 0.00 3.08
2613 2848 6.437793 AGCTAGTACAAAGTTGAGACACCTAT 59.562 38.462 0.00 0.00 0.00 2.57
2614 2849 7.038941 AGCTAGTACAAAGTTGAGACACCTATT 60.039 37.037 0.00 0.00 0.00 1.73
2615 2850 7.603024 GCTAGTACAAAGTTGAGACACCTATTT 59.397 37.037 0.00 0.00 0.00 1.40
2616 2851 9.490379 CTAGTACAAAGTTGAGACACCTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
2617 2852 8.154649 AGTACAAAGTTGAGACACCTATTTTG 57.845 34.615 0.00 0.00 0.00 2.44
2618 2853 6.391227 ACAAAGTTGAGACACCTATTTTGG 57.609 37.500 0.00 0.00 0.00 3.28
2619 2854 5.301805 ACAAAGTTGAGACACCTATTTTGGG 59.698 40.000 0.00 0.00 0.00 4.12
2620 2855 4.993705 AGTTGAGACACCTATTTTGGGA 57.006 40.909 0.00 0.00 0.00 4.37
2621 2856 4.652822 AGTTGAGACACCTATTTTGGGAC 58.347 43.478 0.00 0.00 0.00 4.46
2622 2857 3.328382 TGAGACACCTATTTTGGGACG 57.672 47.619 0.00 0.00 0.00 4.79
2623 2858 2.027561 TGAGACACCTATTTTGGGACGG 60.028 50.000 0.00 0.00 0.00 4.79
2624 2859 2.235402 GAGACACCTATTTTGGGACGGA 59.765 50.000 0.00 0.00 0.00 4.69
2625 2860 2.236395 AGACACCTATTTTGGGACGGAG 59.764 50.000 0.00 0.00 0.00 4.63
2626 2861 1.280998 ACACCTATTTTGGGACGGAGG 59.719 52.381 0.00 0.00 0.00 4.30
2627 2862 1.280998 CACCTATTTTGGGACGGAGGT 59.719 52.381 0.00 0.00 37.81 3.85
2628 2863 2.502538 CACCTATTTTGGGACGGAGGTA 59.497 50.000 0.00 0.00 35.53 3.08
2629 2864 2.770232 ACCTATTTTGGGACGGAGGTAG 59.230 50.000 0.00 0.00 35.53 3.18
2630 2865 2.770232 CCTATTTTGGGACGGAGGTAGT 59.230 50.000 0.00 0.00 0.00 2.73
2631 2866 3.962718 CCTATTTTGGGACGGAGGTAGTA 59.037 47.826 0.00 0.00 0.00 1.82
2632 2867 4.591924 CCTATTTTGGGACGGAGGTAGTAT 59.408 45.833 0.00 0.00 0.00 2.12
2633 2868 5.071384 CCTATTTTGGGACGGAGGTAGTATT 59.929 44.000 0.00 0.00 0.00 1.89
2634 2869 6.268387 CCTATTTTGGGACGGAGGTAGTATTA 59.732 42.308 0.00 0.00 0.00 0.98
2635 2870 5.343307 TTTTGGGACGGAGGTAGTATTAC 57.657 43.478 0.00 0.00 0.00 1.89
2639 2874 5.765510 TGGGACGGAGGTAGTATTACTTAA 58.234 41.667 0.85 0.00 0.00 1.85
2672 2907 5.241506 GCCTGTATCCAAATAGCAGCAATAA 59.758 40.000 0.00 0.00 0.00 1.40
2687 2923 6.327104 AGCAGCAATAAATGATTATTTGGGGA 59.673 34.615 5.75 0.00 39.21 4.81
2720 2958 5.212194 ACGACAAACAATTTTCCAGATTCG 58.788 37.500 0.00 0.00 0.00 3.34
2743 2981 5.178797 GCCTCTTCATTTAGACACTTGCTA 58.821 41.667 0.00 0.00 0.00 3.49
2744 2982 5.819901 GCCTCTTCATTTAGACACTTGCTAT 59.180 40.000 0.00 0.00 0.00 2.97
2806 3044 1.130777 AACAAGTTTGGCATGCCCTT 58.869 45.000 33.44 24.92 34.56 3.95
2823 3061 3.490933 GCCCTTCTTGTGTTCTTTCCAAC 60.491 47.826 0.00 0.00 0.00 3.77
2824 3062 3.699038 CCCTTCTTGTGTTCTTTCCAACA 59.301 43.478 0.00 0.00 33.75 3.33
2843 3081 6.775142 TCCAACAAATTATTCAGTCAACAGGA 59.225 34.615 0.00 0.00 0.00 3.86
2852 3090 3.364277 GTCAACAGGACCCGCTATC 57.636 57.895 0.00 0.00 40.83 2.08
2860 3098 1.755380 AGGACCCGCTATCTGTACAAC 59.245 52.381 0.00 0.00 0.00 3.32
2869 3107 6.331061 CCGCTATCTGTACAACTTTTCTAGT 58.669 40.000 0.00 0.00 39.32 2.57
2904 3142 6.636705 ACGAAACTTAGTCATGGCACTATAA 58.363 36.000 0.00 0.00 0.00 0.98
2994 3244 7.295322 TGATGAGACAGATAGGATGTTAAGG 57.705 40.000 0.00 0.00 0.00 2.69
3042 3292 2.159142 AGTTATCCAGTTTACTCGCCCG 60.159 50.000 0.00 0.00 0.00 6.13
3143 3393 4.872691 AGACTTGCTCTACCGAATCAATTG 59.127 41.667 0.00 0.00 0.00 2.32
3205 3633 6.349300 TCAGTTGAGGACTTAAATCTATGCC 58.651 40.000 0.00 0.00 36.10 4.40
3220 3648 3.141449 GCCATGGCATTTAGGGGC 58.859 61.111 32.08 9.67 41.49 5.80
3226 3654 1.450669 GGCATTTAGGGGCGTCGAA 60.451 57.895 0.00 0.00 0.00 3.71
3232 3660 3.626996 TAGGGGCGTCGAACGAGGA 62.627 63.158 18.51 0.00 46.05 3.71
3295 3723 1.618837 TCTGCTACACTGACCCAAGAC 59.381 52.381 0.00 0.00 0.00 3.01
3332 3768 2.328819 ACTTGAGCTGCATCATCCTC 57.671 50.000 1.02 0.00 0.00 3.71
3349 3785 3.173151 TCCTCTGCTGTTGAATAGTGGA 58.827 45.455 0.00 0.00 32.25 4.02
3400 3836 2.427506 GAGTCCTACAAGCTGGTTTGG 58.572 52.381 0.00 2.56 32.32 3.28
3404 3840 1.609208 CTACAAGCTGGTTTGGCAGT 58.391 50.000 0.00 0.00 32.32 4.40
3408 3859 2.027285 ACAAGCTGGTTTGGCAGTTTTT 60.027 40.909 0.00 0.00 32.32 1.94
3409 3860 2.314323 AGCTGGTTTGGCAGTTTTTG 57.686 45.000 0.00 0.00 0.00 2.44
3482 3933 0.811281 GGCTATTGTGAACTGTGCCC 59.189 55.000 0.00 0.00 33.45 5.36
3495 3946 0.955428 TGTGCCCTGCGTTCTCATTC 60.955 55.000 0.00 0.00 0.00 2.67
3508 3959 4.690748 CGTTCTCATTCTCCTTGCTGTTAA 59.309 41.667 0.00 0.00 0.00 2.01
3516 3967 4.592942 TCTCCTTGCTGTTAATGCAGATT 58.407 39.130 0.00 0.00 41.71 2.40
3543 3994 1.068610 TCAAACATAAAGCCGCTGTGC 60.069 47.619 0.00 0.00 0.00 4.57
3707 4159 5.530171 AGCGTGAATCTACTCGAAGGTAATA 59.470 40.000 0.00 0.00 0.00 0.98
3807 4260 7.324178 ACTACAAATAACCATCTCTGACTGAC 58.676 38.462 0.00 0.00 0.00 3.51
3871 4325 3.066064 TGTGTGCGCAAACATAAGAAAGT 59.934 39.130 29.23 0.00 31.49 2.66
4051 4505 4.883083 TGGCTCGAGGAATACATATTGAC 58.117 43.478 15.58 0.00 0.00 3.18
4420 4886 5.824904 CTGATTTTGGTCAGGACTTATGG 57.175 43.478 0.00 0.00 41.49 2.74
4437 4903 7.042658 GGACTTATGGACGAACTAATGATGAAC 60.043 40.741 0.00 0.00 0.00 3.18
4562 5034 8.986477 AATGTCATGTAGGTTAAAAGATTTGC 57.014 30.769 0.00 0.00 0.00 3.68
4735 5208 6.484540 CCTTCGATGTTCTTCATTGATTCTG 58.515 40.000 0.00 0.00 43.85 3.02
4815 5296 5.921962 AAGATAAATTGAAAGGGTCTGCC 57.078 39.130 0.00 0.00 0.00 4.85
5030 5516 4.595986 TCCCCCTGTTTGCTTTTCTATAC 58.404 43.478 0.00 0.00 0.00 1.47
5110 5612 6.072508 TGGCTGATTTAGTCTGAACATTTGTC 60.073 38.462 0.00 0.00 0.00 3.18
5111 5613 6.072508 GGCTGATTTAGTCTGAACATTTGTCA 60.073 38.462 0.00 0.00 0.00 3.58
5170 5672 8.574196 AAATTTTTATGTCTTTCCAACTGACG 57.426 30.769 0.00 0.00 33.81 4.35
5229 5732 5.106555 CCTTGTTCAAATGCTACAAGTCGAT 60.107 40.000 18.39 0.00 44.46 3.59
5267 5770 3.515104 TCATCAGAGTTGTCAGTGGCATA 59.485 43.478 0.00 0.00 0.00 3.14
5327 5837 4.987408 TCTTCACCGGATCACGTAATTA 57.013 40.909 9.46 0.00 42.24 1.40
5357 5867 9.622004 CATCAAACATCATGGCTTAATATCTTC 57.378 33.333 0.00 0.00 0.00 2.87
5372 5882 2.440539 TCTTCAGTTCTTGACGCTCC 57.559 50.000 0.00 0.00 34.94 4.70
5409 5919 0.036388 CCGTGTTACCACCTGCATCT 60.036 55.000 0.00 0.00 38.41 2.90
5412 5922 2.778299 GTGTTACCACCTGCATCTCAA 58.222 47.619 0.00 0.00 35.44 3.02
5421 5931 0.099968 CTGCATCTCAACCATTGGCG 59.900 55.000 1.54 0.00 0.00 5.69
5445 5955 1.806758 GCATTTCGCGCATGGCTTT 60.807 52.632 8.75 0.00 40.44 3.51
5446 5956 1.745768 GCATTTCGCGCATGGCTTTC 61.746 55.000 8.75 0.32 40.44 2.62
5461 5971 2.159037 GGCTTTCCAGTAAACGCACTAC 59.841 50.000 0.00 0.00 0.00 2.73
5480 5991 7.097834 GCACTACAACTAAGGTTATCTGACTT 58.902 38.462 0.00 0.00 33.88 3.01
5546 6059 1.983691 CTCCTGGCTCCCACATGATAT 59.016 52.381 0.00 0.00 0.00 1.63
5595 6108 2.989166 GCTTTGCATTTGTGCCTTCTAC 59.011 45.455 0.00 0.00 0.00 2.59
5706 6257 1.160137 GGAACGACAGCTCAGCAATT 58.840 50.000 0.00 0.00 0.00 2.32
5707 6258 1.537202 GGAACGACAGCTCAGCAATTT 59.463 47.619 0.00 0.00 0.00 1.82
5924 6476 1.823899 GCTGGCAATTCTACCCCCG 60.824 63.158 0.00 0.00 0.00 5.73
5929 6481 1.318576 GCAATTCTACCCCCGGAATG 58.681 55.000 0.73 0.00 33.19 2.67
5964 6544 0.317160 CACTTCACTGTCTACCGCCA 59.683 55.000 0.00 0.00 0.00 5.69
5969 6549 1.001760 ACTGTCTACCGCCATCCCT 59.998 57.895 0.00 0.00 0.00 4.20
6051 6634 0.324460 CTTCGTGTAGGGGTCCTCCT 60.324 60.000 4.51 4.51 40.79 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.102838 AGCATACTCTCTTCATGGAGCATT 59.897 41.667 0.00 0.00 33.70 3.56
113 114 1.902432 ATCTACCTCCTACGCCGCC 60.902 63.158 0.00 0.00 0.00 6.13
153 154 5.503357 CGGTATAATTACAACTTGCACGCAT 60.503 40.000 0.00 0.00 0.00 4.73
155 156 4.033129 TCGGTATAATTACAACTTGCACGC 59.967 41.667 0.00 0.00 0.00 5.34
172 173 9.170734 CATCAAGAATTATGGATTGATCGGTAT 57.829 33.333 0.00 0.00 39.68 2.73
175 176 7.389884 AGACATCAAGAATTATGGATTGATCGG 59.610 37.037 0.00 0.00 39.68 4.18
179 180 7.809238 AGGAGACATCAAGAATTATGGATTGA 58.191 34.615 0.00 0.00 36.22 2.57
181 182 9.736414 CATAGGAGACATCAAGAATTATGGATT 57.264 33.333 0.00 0.00 0.00 3.01
193 194 4.277515 GCATAGGCATAGGAGACATCAA 57.722 45.455 0.00 0.00 40.72 2.57
218 219 5.734220 GCACACTAGGGTTATGATTTGCATG 60.734 44.000 0.00 0.00 37.87 4.06
244 250 3.815401 GGTTGTGTTATGTCTCTGCAGTT 59.185 43.478 14.67 0.00 0.00 3.16
319 327 8.986847 CATGTCTTATATAAGGAGCAAGACTTG 58.013 37.037 19.98 11.02 43.45 3.16
373 381 6.582636 TCATCTACTAAAGGACGAATGCATT 58.417 36.000 12.83 12.83 0.00 3.56
374 382 6.161855 TCATCTACTAAAGGACGAATGCAT 57.838 37.500 0.00 0.00 0.00 3.96
375 383 5.592104 TCATCTACTAAAGGACGAATGCA 57.408 39.130 0.00 0.00 0.00 3.96
376 384 7.148722 GCTATTCATCTACTAAAGGACGAATGC 60.149 40.741 0.00 0.00 0.00 3.56
377 385 8.085296 AGCTATTCATCTACTAAAGGACGAATG 58.915 37.037 0.00 0.00 0.00 2.67
378 386 8.184304 AGCTATTCATCTACTAAAGGACGAAT 57.816 34.615 0.00 0.00 0.00 3.34
379 387 7.584122 AGCTATTCATCTACTAAAGGACGAA 57.416 36.000 0.00 0.00 0.00 3.85
380 388 8.687292 TTAGCTATTCATCTACTAAAGGACGA 57.313 34.615 0.00 0.00 0.00 4.20
381 389 8.784994 TCTTAGCTATTCATCTACTAAAGGACG 58.215 37.037 0.00 0.00 0.00 4.79
383 391 8.798402 GCTCTTAGCTATTCATCTACTAAAGGA 58.202 37.037 0.00 0.00 38.45 3.36
384 392 8.580720 TGCTCTTAGCTATTCATCTACTAAAGG 58.419 37.037 0.00 0.00 42.97 3.11
385 393 9.973450 TTGCTCTTAGCTATTCATCTACTAAAG 57.027 33.333 0.00 0.00 42.97 1.85
397 405 6.203723 GGACGAATGAATTGCTCTTAGCTATT 59.796 38.462 8.05 8.05 46.35 1.73
398 406 5.698545 GGACGAATGAATTGCTCTTAGCTAT 59.301 40.000 0.00 0.00 42.97 2.97
399 407 5.050490 GGACGAATGAATTGCTCTTAGCTA 58.950 41.667 0.03 0.00 42.97 3.32
400 408 3.873952 GGACGAATGAATTGCTCTTAGCT 59.126 43.478 0.00 0.00 42.97 3.32
401 409 3.873952 AGGACGAATGAATTGCTCTTAGC 59.126 43.478 0.00 0.00 42.82 3.09
402 410 6.428385 AAAGGACGAATGAATTGCTCTTAG 57.572 37.500 0.00 0.00 0.00 2.18
403 411 7.103641 ACTAAAGGACGAATGAATTGCTCTTA 58.896 34.615 0.00 0.00 0.00 2.10
404 412 5.940470 ACTAAAGGACGAATGAATTGCTCTT 59.060 36.000 0.00 0.00 0.00 2.85
405 413 5.491982 ACTAAAGGACGAATGAATTGCTCT 58.508 37.500 0.00 0.00 0.00 4.09
406 414 5.803020 ACTAAAGGACGAATGAATTGCTC 57.197 39.130 0.00 0.00 0.00 4.26
407 415 6.910536 CTACTAAAGGACGAATGAATTGCT 57.089 37.500 0.00 0.00 0.00 3.91
446 454 2.171003 GCCAAGCTCATAACCAAGGTT 58.829 47.619 9.74 9.74 41.65 3.50
472 480 9.481340 CCTTAACAAGATCGATTCTCATGATTA 57.519 33.333 0.00 0.00 31.78 1.75
474 482 6.933521 CCCTTAACAAGATCGATTCTCATGAT 59.066 38.462 0.00 0.00 31.78 2.45
536 544 7.873719 TTCAATGGTTTAGAAGAAGTCAACA 57.126 32.000 0.00 0.00 0.00 3.33
595 603 0.882927 TTGGAAACTGCCCGAGTTCG 60.883 55.000 0.00 0.00 44.68 3.95
607 615 2.814336 AGCCGAGTTTGAGATTGGAAAC 59.186 45.455 0.00 0.00 33.11 2.78
620 628 5.671493 ACAAATATTAGCACTAGCCGAGTT 58.329 37.500 0.00 0.00 43.56 3.01
626 634 9.495754 CAAAGAGAAACAAATATTAGCACTAGC 57.504 33.333 0.00 0.00 42.56 3.42
679 687 5.827797 ACAAGCAGTCACTATGAAAAAGGAA 59.172 36.000 0.00 0.00 0.00 3.36
680 688 5.376625 ACAAGCAGTCACTATGAAAAAGGA 58.623 37.500 0.00 0.00 0.00 3.36
681 689 5.695851 ACAAGCAGTCACTATGAAAAAGG 57.304 39.130 0.00 0.00 0.00 3.11
682 690 7.420800 AGAAACAAGCAGTCACTATGAAAAAG 58.579 34.615 0.00 0.00 0.00 2.27
683 691 7.333528 AGAAACAAGCAGTCACTATGAAAAA 57.666 32.000 0.00 0.00 0.00 1.94
685 693 6.238731 CCAAGAAACAAGCAGTCACTATGAAA 60.239 38.462 0.00 0.00 0.00 2.69
686 694 5.239306 CCAAGAAACAAGCAGTCACTATGAA 59.761 40.000 0.00 0.00 0.00 2.57
687 695 4.756642 CCAAGAAACAAGCAGTCACTATGA 59.243 41.667 0.00 0.00 0.00 2.15
688 696 4.516698 ACCAAGAAACAAGCAGTCACTATG 59.483 41.667 0.00 0.00 0.00 2.23
691 699 3.004752 ACCAAGAAACAAGCAGTCACT 57.995 42.857 0.00 0.00 0.00 3.41
692 700 4.893424 TTACCAAGAAACAAGCAGTCAC 57.107 40.909 0.00 0.00 0.00 3.67
694 702 5.243426 TGTTTACCAAGAAACAAGCAGTC 57.757 39.130 0.00 0.00 44.30 3.51
701 709 5.582665 GCCAACAATTGTTTACCAAGAAACA 59.417 36.000 21.10 0.00 45.29 2.83
702 710 5.815222 AGCCAACAATTGTTTACCAAGAAAC 59.185 36.000 21.10 3.16 39.35 2.78
703 711 5.814705 CAGCCAACAATTGTTTACCAAGAAA 59.185 36.000 21.10 0.00 36.25 2.52
704 712 5.355596 CAGCCAACAATTGTTTACCAAGAA 58.644 37.500 21.10 0.00 36.25 2.52
705 713 4.739137 GCAGCCAACAATTGTTTACCAAGA 60.739 41.667 21.10 0.00 36.25 3.02
706 714 3.494251 GCAGCCAACAATTGTTTACCAAG 59.506 43.478 21.10 8.87 36.25 3.61
707 715 3.133721 AGCAGCCAACAATTGTTTACCAA 59.866 39.130 21.10 0.00 35.83 3.67
708 716 2.697751 AGCAGCCAACAATTGTTTACCA 59.302 40.909 21.10 0.00 35.83 3.25
709 717 3.059166 CAGCAGCCAACAATTGTTTACC 58.941 45.455 21.10 11.87 35.83 2.85
710 718 3.059166 CCAGCAGCCAACAATTGTTTAC 58.941 45.455 21.10 15.33 35.83 2.01
711 719 2.697751 ACCAGCAGCCAACAATTGTTTA 59.302 40.909 21.10 0.00 35.83 2.01
712 720 1.485895 ACCAGCAGCCAACAATTGTTT 59.514 42.857 21.10 4.59 35.83 2.83
715 723 2.035704 TGTAACCAGCAGCCAACAATTG 59.964 45.455 3.24 3.24 0.00 2.32
721 729 3.133721 ACAATTTTGTAACCAGCAGCCAA 59.866 39.130 0.00 0.00 40.16 4.52
793 801 4.083324 TGCGCCTTGAGAAAATAAAGAGTG 60.083 41.667 4.18 0.00 0.00 3.51
794 802 4.072131 TGCGCCTTGAGAAAATAAAGAGT 58.928 39.130 4.18 0.00 0.00 3.24
799 808 3.505680 ACATGTGCGCCTTGAGAAAATAA 59.494 39.130 4.18 0.00 0.00 1.40
801 810 1.888512 ACATGTGCGCCTTGAGAAAAT 59.111 42.857 4.18 0.00 0.00 1.82
805 814 0.735978 CGTACATGTGCGCCTTGAGA 60.736 55.000 23.05 0.00 0.00 3.27
806 815 1.014044 ACGTACATGTGCGCCTTGAG 61.014 55.000 32.02 8.53 42.39 3.02
807 816 0.244178 TACGTACATGTGCGCCTTGA 59.756 50.000 32.02 12.65 42.39 3.02
808 817 0.368907 GTACGTACATGTGCGCCTTG 59.631 55.000 32.02 9.92 42.39 3.61
818 827 3.513680 TCTGCGGATTTGTACGTACAT 57.486 42.857 27.82 15.13 35.89 2.29
819 828 3.300852 TTCTGCGGATTTGTACGTACA 57.699 42.857 24.10 24.10 0.00 2.90
821 830 4.989797 TCTTTTTCTGCGGATTTGTACGTA 59.010 37.500 0.00 0.00 0.00 3.57
831 840 2.104111 TGGTCTTCTCTTTTTCTGCGGA 59.896 45.455 0.00 0.00 0.00 5.54
832 841 2.494059 TGGTCTTCTCTTTTTCTGCGG 58.506 47.619 0.00 0.00 0.00 5.69
834 843 3.312697 ACGTTGGTCTTCTCTTTTTCTGC 59.687 43.478 0.00 0.00 0.00 4.26
835 844 4.786609 GCACGTTGGTCTTCTCTTTTTCTG 60.787 45.833 0.00 0.00 0.00 3.02
836 845 3.312697 GCACGTTGGTCTTCTCTTTTTCT 59.687 43.478 0.00 0.00 0.00 2.52
837 846 3.064820 TGCACGTTGGTCTTCTCTTTTTC 59.935 43.478 0.00 0.00 0.00 2.29
838 847 3.013921 TGCACGTTGGTCTTCTCTTTTT 58.986 40.909 0.00 0.00 0.00 1.94
843 852 1.853319 CGTGCACGTTGGTCTTCTC 59.147 57.895 30.50 0.00 34.11 2.87
865 874 1.203994 TGGGTCGAAGCTTGTACTAGC 59.796 52.381 19.89 19.89 41.53 3.42
866 875 3.491104 GGATGGGTCGAAGCTTGTACTAG 60.491 52.174 2.10 0.00 0.00 2.57
867 876 2.429610 GGATGGGTCGAAGCTTGTACTA 59.570 50.000 2.10 0.00 0.00 1.82
868 877 1.207329 GGATGGGTCGAAGCTTGTACT 59.793 52.381 2.10 0.00 0.00 2.73
871 880 0.250513 GAGGATGGGTCGAAGCTTGT 59.749 55.000 2.10 0.00 0.00 3.16
872 881 0.250234 TGAGGATGGGTCGAAGCTTG 59.750 55.000 2.10 0.00 0.00 4.01
873 882 0.539051 CTGAGGATGGGTCGAAGCTT 59.461 55.000 0.00 0.00 0.00 3.74
874 883 1.333636 CCTGAGGATGGGTCGAAGCT 61.334 60.000 0.00 0.00 0.00 3.74
878 968 2.764128 GCCCTGAGGATGGGTCGA 60.764 66.667 0.00 0.00 46.22 4.20
879 969 4.227134 CGCCCTGAGGATGGGTCG 62.227 72.222 0.00 0.00 46.22 4.79
881 971 3.402681 CACGCCCTGAGGATGGGT 61.403 66.667 0.00 0.00 46.22 4.51
885 975 1.299976 GAAACCACGCCCTGAGGAT 59.700 57.895 0.00 0.00 33.47 3.24
909 1038 3.062466 GAAAGACCAAGGGGCGGC 61.062 66.667 0.00 0.00 34.63 6.53
910 1039 2.361230 GGAAAGACCAAGGGGCGG 60.361 66.667 0.00 0.00 34.63 6.13
912 1041 2.037367 GGGGAAAGACCAAGGGGC 59.963 66.667 0.00 0.00 41.20 5.80
931 1060 2.334838 GCGGTACAAGTACTGGTGAAG 58.665 52.381 13.52 4.99 41.52 3.02
938 1067 1.345063 AAGGTGGCGGTACAAGTACT 58.655 50.000 9.94 0.00 36.36 2.73
940 1069 2.934886 AAAAGGTGGCGGTACAAGTA 57.065 45.000 0.00 0.00 0.00 2.24
941 1070 2.061509 AAAAAGGTGGCGGTACAAGT 57.938 45.000 0.00 0.00 0.00 3.16
971 1101 1.314730 CTGTACAGGTGGCGGTTTTT 58.685 50.000 15.49 0.00 0.00 1.94
974 1104 2.032071 GCTGTACAGGTGGCGGTT 59.968 61.111 23.95 0.00 0.00 4.44
975 1105 2.516888 AAGCTGTACAGGTGGCGGT 61.517 57.895 27.15 9.30 39.39 5.68
976 1106 2.034879 CAAGCTGTACAGGTGGCGG 61.035 63.158 27.15 13.72 39.39 6.13
978 1108 0.593128 CAACAAGCTGTACAGGTGGC 59.407 55.000 27.15 12.37 39.39 5.01
979 1109 0.593128 GCAACAAGCTGTACAGGTGG 59.407 55.000 27.15 25.88 39.39 4.61
981 1111 1.507141 GCGCAACAAGCTGTACAGGT 61.507 55.000 21.62 21.62 42.61 4.00
982 1112 1.207593 GCGCAACAAGCTGTACAGG 59.792 57.895 23.95 10.27 42.61 4.00
1084 1243 2.040359 GGGAGGAGGGAAGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
1104 1263 3.972276 GAGGAGGAGCGGCGCTAG 61.972 72.222 36.55 2.71 39.88 3.42
1358 1523 1.600957 CATTACAGATTCAGCAGGCCG 59.399 52.381 0.00 0.00 0.00 6.13
1587 1787 8.873215 TGCATGCTACTAGTATTTTCTAAGAC 57.127 34.615 20.33 0.00 0.00 3.01
1611 1816 4.579869 ACAGTAAACATAGCCCTCAGTTG 58.420 43.478 0.00 0.00 0.00 3.16
1719 1924 0.610232 CCCTCTGAAAAGCACCAGGG 60.610 60.000 0.00 0.00 35.99 4.45
1761 1966 1.599797 AAGAGTTTTGCCGGACCCG 60.600 57.895 5.05 0.66 39.44 5.28
1905 2117 9.909644 CAGTATAGACTAGTGTACACAAGTTTT 57.090 33.333 27.06 8.50 33.32 2.43
1963 2175 4.170292 AGAACAGCATGCATCAGTTTTC 57.830 40.909 21.98 7.52 42.53 2.29
2060 2273 4.282195 ACCTGAAGTGGAACAAACAAACAA 59.718 37.500 0.00 0.00 44.16 2.83
2101 2316 0.323360 GCCCACCACAGGAGCAATAA 60.323 55.000 0.00 0.00 0.00 1.40
2138 2353 1.826385 CAATGGAGGACTGACCAACC 58.174 55.000 0.00 2.63 42.04 3.77
2156 2371 4.516323 TCAGATTTGAGATTTCATCCGCA 58.484 39.130 0.00 0.00 32.27 5.69
2172 2387 7.000472 TCTTGTTTGGACTTCTTGATCAGATT 59.000 34.615 0.00 0.00 0.00 2.40
2210 2425 6.800408 CCATTTCGACATATTCATCATCAAGC 59.200 38.462 0.00 0.00 0.00 4.01
2270 2485 6.273965 TGATATGATCCATCAATCTTCCAGGT 59.726 38.462 4.96 0.00 40.69 4.00
2303 2518 6.374417 AGATGCTCCAGACTAAAACCTTTA 57.626 37.500 0.00 0.00 0.00 1.85
2355 2570 5.175127 GGAGATGAAAGAGGAAACAGAGAC 58.825 45.833 0.00 0.00 0.00 3.36
2357 2572 5.157940 TGGAGATGAAAGAGGAAACAGAG 57.842 43.478 0.00 0.00 0.00 3.35
2363 2578 6.660949 GGAGAATTTTGGAGATGAAAGAGGAA 59.339 38.462 0.00 0.00 0.00 3.36
2447 2662 6.712998 TGCACACACAAACAATACTACCTTAT 59.287 34.615 0.00 0.00 0.00 1.73
2448 2663 6.056236 TGCACACACAAACAATACTACCTTA 58.944 36.000 0.00 0.00 0.00 2.69
2449 2664 4.884744 TGCACACACAAACAATACTACCTT 59.115 37.500 0.00 0.00 0.00 3.50
2470 2705 0.532862 ATGGTACTGCGGCACTATGC 60.533 55.000 0.00 0.00 44.08 3.14
2517 2752 5.514310 GGGAGTATACACTTTGGTCCAAACT 60.514 44.000 13.26 7.70 34.21 2.66
2537 2772 3.359695 TTTATTTTGGGACGGAGGGAG 57.640 47.619 0.00 0.00 0.00 4.30
2538 2773 3.010808 ACATTTATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
2539 2774 3.361786 ACATTTATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
2540 2775 4.270008 AGACATTTATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 0.00 4.30
2541 2776 4.941263 TGAGACATTTATTTTGGGACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2542 2777 4.912586 TGAGACATTTATTTTGGGACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2543 2778 5.637006 TTGAGACATTTATTTTGGGACGG 57.363 39.130 0.00 0.00 0.00 4.79
2544 2779 5.095490 GCTTGAGACATTTATTTTGGGACG 58.905 41.667 0.00 0.00 0.00 4.79
2545 2780 6.272822 AGCTTGAGACATTTATTTTGGGAC 57.727 37.500 0.00 0.00 0.00 4.46
2546 2781 6.916360 AAGCTTGAGACATTTATTTTGGGA 57.084 33.333 0.00 0.00 0.00 4.37
2547 2782 7.830739 ACTAAGCTTGAGACATTTATTTTGGG 58.169 34.615 9.86 0.00 0.00 4.12
2548 2783 9.774742 GTACTAAGCTTGAGACATTTATTTTGG 57.225 33.333 9.86 0.00 0.00 3.28
2555 2790 9.683069 CAAAATTGTACTAAGCTTGAGACATTT 57.317 29.630 9.86 9.38 0.00 2.32
2556 2791 8.850156 ACAAAATTGTACTAAGCTTGAGACATT 58.150 29.630 9.86 3.94 40.16 2.71
2557 2792 8.396272 ACAAAATTGTACTAAGCTTGAGACAT 57.604 30.769 9.86 0.00 40.16 3.06
2558 2793 7.801716 ACAAAATTGTACTAAGCTTGAGACA 57.198 32.000 9.86 7.12 40.16 3.41
2582 2817 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
2583 2818 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
2584 2819 7.116519 GGTGTCTCAACTTTGTACTAGCTTTAG 59.883 40.741 0.00 0.00 0.00 1.85
2585 2820 6.927381 GGTGTCTCAACTTTGTACTAGCTTTA 59.073 38.462 0.00 0.00 0.00 1.85
2586 2821 5.758784 GGTGTCTCAACTTTGTACTAGCTTT 59.241 40.000 0.00 0.00 0.00 3.51
2587 2822 5.070580 AGGTGTCTCAACTTTGTACTAGCTT 59.929 40.000 0.00 0.00 0.00 3.74
2588 2823 4.589374 AGGTGTCTCAACTTTGTACTAGCT 59.411 41.667 0.00 0.00 0.00 3.32
2589 2824 4.884247 AGGTGTCTCAACTTTGTACTAGC 58.116 43.478 0.00 0.00 0.00 3.42
2590 2825 9.490379 AAAATAGGTGTCTCAACTTTGTACTAG 57.510 33.333 0.00 0.00 31.86 2.57
2591 2826 9.268268 CAAAATAGGTGTCTCAACTTTGTACTA 57.732 33.333 0.00 0.00 31.86 1.82
2592 2827 7.228706 CCAAAATAGGTGTCTCAACTTTGTACT 59.771 37.037 0.00 0.00 31.86 2.73
2593 2828 7.360361 CCAAAATAGGTGTCTCAACTTTGTAC 58.640 38.462 0.00 0.00 31.86 2.90
2594 2829 6.488683 CCCAAAATAGGTGTCTCAACTTTGTA 59.511 38.462 0.00 0.00 31.86 2.41
2595 2830 5.301805 CCCAAAATAGGTGTCTCAACTTTGT 59.698 40.000 0.00 0.00 31.86 2.83
2596 2831 5.534654 TCCCAAAATAGGTGTCTCAACTTTG 59.465 40.000 0.00 0.00 31.86 2.77
2597 2832 5.535030 GTCCCAAAATAGGTGTCTCAACTTT 59.465 40.000 0.00 0.00 31.86 2.66
2598 2833 5.070685 GTCCCAAAATAGGTGTCTCAACTT 58.929 41.667 0.00 0.00 31.86 2.66
2599 2834 4.652822 GTCCCAAAATAGGTGTCTCAACT 58.347 43.478 0.00 0.00 34.83 3.16
2600 2835 3.435671 CGTCCCAAAATAGGTGTCTCAAC 59.564 47.826 0.00 0.00 0.00 3.18
2601 2836 3.558321 CCGTCCCAAAATAGGTGTCTCAA 60.558 47.826 0.00 0.00 0.00 3.02
2602 2837 2.027561 CCGTCCCAAAATAGGTGTCTCA 60.028 50.000 0.00 0.00 0.00 3.27
2603 2838 2.235402 TCCGTCCCAAAATAGGTGTCTC 59.765 50.000 0.00 0.00 0.00 3.36
2604 2839 2.236395 CTCCGTCCCAAAATAGGTGTCT 59.764 50.000 0.00 0.00 0.00 3.41
2605 2840 2.629051 CTCCGTCCCAAAATAGGTGTC 58.371 52.381 0.00 0.00 0.00 3.67
2606 2841 1.280998 CCTCCGTCCCAAAATAGGTGT 59.719 52.381 0.00 0.00 0.00 4.16
2607 2842 1.280998 ACCTCCGTCCCAAAATAGGTG 59.719 52.381 0.00 0.00 36.03 4.00
2608 2843 1.665137 ACCTCCGTCCCAAAATAGGT 58.335 50.000 0.00 0.00 32.52 3.08
2609 2844 2.770232 ACTACCTCCGTCCCAAAATAGG 59.230 50.000 0.00 0.00 0.00 2.57
2610 2845 5.803237 ATACTACCTCCGTCCCAAAATAG 57.197 43.478 0.00 0.00 0.00 1.73
2611 2846 6.840705 AGTAATACTACCTCCGTCCCAAAATA 59.159 38.462 0.00 0.00 0.00 1.40
2612 2847 5.664457 AGTAATACTACCTCCGTCCCAAAAT 59.336 40.000 0.00 0.00 0.00 1.82
2613 2848 5.025453 AGTAATACTACCTCCGTCCCAAAA 58.975 41.667 0.00 0.00 0.00 2.44
2614 2849 4.613437 AGTAATACTACCTCCGTCCCAAA 58.387 43.478 0.00 0.00 0.00 3.28
2615 2850 4.255510 AGTAATACTACCTCCGTCCCAA 57.744 45.455 0.00 0.00 0.00 4.12
2616 2851 3.959495 AGTAATACTACCTCCGTCCCA 57.041 47.619 0.00 0.00 0.00 4.37
2617 2852 6.907853 ATTAAGTAATACTACCTCCGTCCC 57.092 41.667 0.00 0.00 0.00 4.46
2618 2853 9.905171 CTAAATTAAGTAATACTACCTCCGTCC 57.095 37.037 0.00 0.00 0.00 4.79
2619 2854 9.404348 GCTAAATTAAGTAATACTACCTCCGTC 57.596 37.037 0.00 0.00 0.00 4.79
2620 2855 9.140874 AGCTAAATTAAGTAATACTACCTCCGT 57.859 33.333 0.00 0.00 0.00 4.69
2621 2856 9.408069 CAGCTAAATTAAGTAATACTACCTCCG 57.592 37.037 0.00 0.00 0.00 4.63
2622 2857 9.708092 CCAGCTAAATTAAGTAATACTACCTCC 57.292 37.037 0.00 0.00 0.00 4.30
2623 2858 9.205719 GCCAGCTAAATTAAGTAATACTACCTC 57.794 37.037 0.00 0.00 0.00 3.85
2624 2859 8.155510 GGCCAGCTAAATTAAGTAATACTACCT 58.844 37.037 0.00 0.00 0.00 3.08
2625 2860 8.155510 AGGCCAGCTAAATTAAGTAATACTACC 58.844 37.037 5.01 0.00 0.00 3.18
2626 2861 8.989980 CAGGCCAGCTAAATTAAGTAATACTAC 58.010 37.037 5.01 0.00 0.00 2.73
2627 2862 8.711170 ACAGGCCAGCTAAATTAAGTAATACTA 58.289 33.333 5.01 0.00 0.00 1.82
2628 2863 7.574607 ACAGGCCAGCTAAATTAAGTAATACT 58.425 34.615 5.01 0.00 0.00 2.12
2629 2864 7.803279 ACAGGCCAGCTAAATTAAGTAATAC 57.197 36.000 5.01 0.00 0.00 1.89
2630 2865 9.720769 GATACAGGCCAGCTAAATTAAGTAATA 57.279 33.333 5.01 0.00 0.00 0.98
2631 2866 7.665974 GGATACAGGCCAGCTAAATTAAGTAAT 59.334 37.037 5.01 0.00 0.00 1.89
2632 2867 6.996282 GGATACAGGCCAGCTAAATTAAGTAA 59.004 38.462 5.01 0.00 0.00 2.24
2633 2868 6.100569 TGGATACAGGCCAGCTAAATTAAGTA 59.899 38.462 5.01 0.00 46.17 2.24
2634 2869 5.104109 TGGATACAGGCCAGCTAAATTAAGT 60.104 40.000 5.01 0.00 46.17 2.24
2635 2870 5.376625 TGGATACAGGCCAGCTAAATTAAG 58.623 41.667 5.01 0.00 46.17 1.85
2672 2907 7.828717 GTCCAAAAATGTCCCCAAATAATCATT 59.171 33.333 0.00 0.00 0.00 2.57
2683 2919 1.611519 TGTCGTCCAAAAATGTCCCC 58.388 50.000 0.00 0.00 0.00 4.81
2687 2923 6.976636 AAATTGTTTGTCGTCCAAAAATGT 57.023 29.167 4.93 2.11 44.36 2.71
2694 2930 3.948473 TCTGGAAAATTGTTTGTCGTCCA 59.052 39.130 0.00 0.00 0.00 4.02
2720 2958 4.006319 AGCAAGTGTCTAAATGAAGAGGC 58.994 43.478 0.00 0.00 0.00 4.70
2743 2981 5.743714 GCATGGTTTCAAATGCCATCCATAT 60.744 40.000 0.00 0.00 42.73 1.78
2744 2982 4.443175 GCATGGTTTCAAATGCCATCCATA 60.443 41.667 0.00 0.00 42.73 2.74
2757 2995 0.310543 GCAACACTCGCATGGTTTCA 59.689 50.000 0.00 0.00 0.00 2.69
2758 2996 0.387239 GGCAACACTCGCATGGTTTC 60.387 55.000 0.00 0.00 0.00 2.78
2806 3044 9.528018 GAATAATTTGTTGGAAAGAACACAAGA 57.472 29.630 0.00 0.00 35.56 3.02
2823 3061 5.391950 CGGGTCCTGTTGACTGAATAATTTG 60.392 44.000 0.00 0.00 43.89 2.32
2824 3062 4.700213 CGGGTCCTGTTGACTGAATAATTT 59.300 41.667 0.00 0.00 43.89 1.82
2843 3081 3.975168 AAAGTTGTACAGATAGCGGGT 57.025 42.857 0.00 0.00 0.00 5.28
2881 3119 7.715265 ATTATAGTGCCATGACTAAGTTTCG 57.285 36.000 0.00 0.00 32.19 3.46
2904 3142 9.878599 GTACGCAATACTAATAAGATGCAAAAT 57.121 29.630 0.00 0.00 33.20 1.82
2953 3203 1.686355 TCAACAACCTGAAACCGCAT 58.314 45.000 0.00 0.00 0.00 4.73
2994 3244 1.428869 ACCAGGACTGATATGCCTCC 58.571 55.000 0.00 0.00 0.00 4.30
3042 3292 4.816385 TGCCGGAAATGATCTTGATTAGTC 59.184 41.667 5.05 0.00 0.00 2.59
3122 3372 3.375299 GCAATTGATTCGGTAGAGCAAGT 59.625 43.478 10.34 0.00 0.00 3.16
3133 3383 9.888878 ACAAGAATAATATGAGCAATTGATTCG 57.111 29.630 10.34 0.00 0.00 3.34
3205 3633 1.785041 CGACGCCCCTAAATGCCATG 61.785 60.000 0.00 0.00 0.00 3.66
3220 3648 3.248266 ACCTTTAAATCCTCGTTCGACG 58.752 45.455 0.00 0.00 44.19 5.12
3226 3654 7.444487 GGATAGCATTTACCTTTAAATCCTCGT 59.556 37.037 0.00 0.00 36.00 4.18
3232 3660 9.700831 AGTCTTGGATAGCATTTACCTTTAAAT 57.299 29.630 0.00 0.00 38.26 1.40
3295 3723 2.310538 AGTTGAGAAAGTTTGCTGGGG 58.689 47.619 0.00 0.00 0.00 4.96
3332 3768 5.618640 GCTTCTTTCCACTATTCAACAGCAG 60.619 44.000 0.00 0.00 0.00 4.24
3349 3785 6.228258 TGTAGGAATTCTGTAACGCTTCTTT 58.772 36.000 5.23 0.00 0.00 2.52
3408 3859 6.825213 AGCATTGATAAGAGTAACAATCAGCA 59.175 34.615 0.00 0.00 32.14 4.41
3409 3860 7.011763 TCAGCATTGATAAGAGTAACAATCAGC 59.988 37.037 0.00 0.00 32.14 4.26
3422 3873 5.163591 TGTTTCAGGCATCAGCATTGATAAG 60.164 40.000 0.00 0.00 42.12 1.73
3482 3933 1.396301 GCAAGGAGAATGAGAACGCAG 59.604 52.381 0.00 0.00 0.00 5.18
3495 3946 4.978083 AATCTGCATTAACAGCAAGGAG 57.022 40.909 5.98 0.00 42.17 3.69
3516 3967 4.457603 AGCGGCTTTATGTTTGATGTACAA 59.542 37.500 0.00 0.00 36.65 2.41
3543 3994 3.688673 GCTCTTGGAGAAGAACAATGAGG 59.311 47.826 0.00 0.00 37.77 3.86
3645 4097 5.686753 TCACTAAACTTAAAGGGCAAGTCA 58.313 37.500 0.00 0.00 35.19 3.41
3718 4171 8.641498 ATGAACTCTGATTTACAACAGGAAAT 57.359 30.769 0.00 0.00 35.20 2.17
3765 4218 8.736751 ATTTGTAGTTACTTATTTTTGTGGCG 57.263 30.769 0.00 0.00 0.00 5.69
3807 4260 4.940046 CCATGGAGCTTGTATAAGGCATAG 59.060 45.833 5.56 0.00 34.40 2.23
3855 4309 3.281341 TGCCACTTTCTTATGTTTGCG 57.719 42.857 0.00 0.00 0.00 4.85
3883 4337 7.335627 TCCACCATCAACATAACCTAACTTAG 58.664 38.462 0.00 0.00 0.00 2.18
3890 4344 5.191727 TCATTCCACCATCAACATAACCT 57.808 39.130 0.00 0.00 0.00 3.50
4051 4505 9.476202 TCATAGTTGATAACATATCTCAAACCG 57.524 33.333 0.00 0.00 31.21 4.44
4405 4871 2.225382 TCGTCCATAAGTCCTGACCA 57.775 50.000 0.00 0.00 0.00 4.02
4420 4886 4.504858 AGGTGGTTCATCATTAGTTCGTC 58.495 43.478 0.00 0.00 0.00 4.20
4437 4903 6.345096 ACTCCAAAACAAATATCAAGGTGG 57.655 37.500 0.00 0.00 0.00 4.61
4562 5034 1.743958 CTGCCTTCTTCAGCATCTTGG 59.256 52.381 0.00 0.00 38.56 3.61
4685 5158 3.953612 GGGTGATGGCAAATCAACATAGA 59.046 43.478 16.02 0.00 37.47 1.98
4735 5208 8.341892 AGGAAAAAGGAAACAGAGACAATATC 57.658 34.615 0.00 0.00 0.00 1.63
4815 5296 1.996292 TCTTCGATGCTTCTGGTTCG 58.004 50.000 0.00 0.00 0.00 3.95
5030 5516 1.421410 GCCGTGTTGATCAGTAGGCG 61.421 60.000 14.67 8.37 34.46 5.52
5111 5613 6.206829 GTGCACCTAGAATTTTCAGGTTTACT 59.793 38.462 5.22 0.00 36.93 2.24
5147 5649 6.149633 GCGTCAGTTGGAAAGACATAAAAAT 58.850 36.000 0.00 0.00 32.68 1.82
5153 5655 1.523758 GGCGTCAGTTGGAAAGACAT 58.476 50.000 0.00 0.00 32.68 3.06
5170 5672 2.277591 TGCAGAAATGCAGGTGGGC 61.278 57.895 0.00 0.00 40.23 5.36
5194 5696 5.639082 GCATTTGAACAAGGGGAACTTAATG 59.361 40.000 0.00 0.00 37.29 1.90
5195 5697 5.543790 AGCATTTGAACAAGGGGAACTTAAT 59.456 36.000 0.00 0.00 37.29 1.40
5198 5700 3.308401 AGCATTTGAACAAGGGGAACTT 58.692 40.909 0.00 0.00 41.00 2.66
5199 5701 2.962859 AGCATTTGAACAAGGGGAACT 58.037 42.857 0.00 0.00 0.00 3.01
5229 5732 2.224597 TGATGAACAAGGAGAAGCAGCA 60.225 45.455 0.00 0.00 0.00 4.41
5327 5837 1.820519 AGCCATGATGTTTGATGCGTT 59.179 42.857 0.00 0.00 0.00 4.84
5357 5867 0.734253 CCTCGGAGCGTCAAGAACTG 60.734 60.000 0.00 0.00 0.00 3.16
5372 5882 3.973135 CACGGTTAATTAGACGATCCTCG 59.027 47.826 15.06 0.00 46.93 4.63
5409 5919 1.917782 GCTTACGCGCCAATGGTTGA 61.918 55.000 5.73 0.00 0.00 3.18
5412 5922 1.312371 AATGCTTACGCGCCAATGGT 61.312 50.000 5.73 0.00 39.65 3.55
5445 5955 3.738830 AGTTGTAGTGCGTTTACTGGA 57.261 42.857 0.00 0.00 32.19 3.86
5446 5956 4.387862 CCTTAGTTGTAGTGCGTTTACTGG 59.612 45.833 0.00 0.00 32.19 4.00
5461 5971 5.352569 CCAGCAAGTCAGATAACCTTAGTTG 59.647 44.000 0.00 0.00 36.68 3.16
5480 5991 1.281419 TTCTTCCCGGATAACCAGCA 58.719 50.000 0.73 0.00 35.59 4.41
5546 6059 8.956426 GGTCAACAAATTGGAAGATAATCTACA 58.044 33.333 0.00 0.00 36.39 2.74
5595 6108 6.035542 AGGTACAAATGCAAAGTTGTTTTTCG 59.964 34.615 16.10 0.00 38.80 3.46
5806 6357 3.255888 GCCCTACCTTTTTCCTGTTCTTG 59.744 47.826 0.00 0.00 0.00 3.02
5943 6496 1.014564 GCGGTAGACAGTGAAGTGGC 61.015 60.000 0.00 0.00 0.00 5.01
5969 6549 2.366837 ATGGCTCCCGGACCATCA 60.367 61.111 15.49 2.97 43.26 3.07
6099 6682 0.324738 TTGCCTCGGTCATCTCCTCT 60.325 55.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.