Multiple sequence alignment - TraesCS6B01G390600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G390600 chr6B 100.000 3856 0 0 1 3856 664833423 664837278 0.000000e+00 7121.0
1 TraesCS6B01G390600 chr6D 93.271 1174 48 11 534 1692 439805216 439806373 0.000000e+00 1701.0
2 TraesCS6B01G390600 chr6D 93.409 531 33 2 1 529 439804633 439805163 0.000000e+00 785.0
3 TraesCS6B01G390600 chr6D 97.311 409 10 1 2669 3076 439807831 439808239 0.000000e+00 693.0
4 TraesCS6B01G390600 chr6D 76.923 520 83 18 13 526 461421837 461422325 1.060000e-65 261.0
5 TraesCS6B01G390600 chr6D 83.168 101 17 0 247 347 461425353 461425453 4.100000e-15 93.5
6 TraesCS6B01G390600 chr6A 92.351 1059 47 11 655 1692 588230075 588231120 0.000000e+00 1476.0
7 TraesCS6B01G390600 chr6A 94.670 394 13 2 2689 3076 588232239 588232630 4.260000e-169 604.0
8 TraesCS6B01G390600 chr6A 84.722 72 7 4 2567 2636 616982459 616982528 6.910000e-08 69.4
9 TraesCS6B01G390600 chrUn 94.444 522 22 6 3340 3855 43068021 43067501 0.000000e+00 797.0
10 TraesCS6B01G390600 chr1B 94.595 518 23 4 3344 3856 575695666 575695149 0.000000e+00 797.0
11 TraesCS6B01G390600 chr1B 94.380 516 26 3 3342 3854 8538408 8537893 0.000000e+00 789.0
12 TraesCS6B01G390600 chr1B 94.163 514 26 4 3344 3856 646509916 646510426 0.000000e+00 780.0
13 TraesCS6B01G390600 chr1B 87.879 66 7 1 2577 2642 560219621 560219685 4.130000e-10 76.8
14 TraesCS6B01G390600 chr1B 82.895 76 11 2 2567 2642 40363411 40363484 2.490000e-07 67.6
15 TraesCS6B01G390600 chr2B 94.584 517 20 5 3345 3856 770299524 770300037 0.000000e+00 793.0
16 TraesCS6B01G390600 chr2B 94.358 514 23 5 3344 3856 756072431 756072939 0.000000e+00 784.0
17 TraesCS6B01G390600 chr5B 94.231 520 24 5 3341 3856 3390297 3390814 0.000000e+00 789.0
18 TraesCS6B01G390600 chr5B 93.981 515 29 2 3343 3856 687258577 687258064 0.000000e+00 778.0
19 TraesCS6B01G390600 chr5B 84.211 76 11 1 2567 2642 589999907 589999833 5.340000e-09 73.1
20 TraesCS6B01G390600 chr4B 94.163 514 29 1 3344 3856 134451555 134452068 0.000000e+00 782.0
21 TraesCS6B01G390600 chr4B 86.957 69 5 2 2583 2648 453219941 453219874 1.490000e-09 75.0
22 TraesCS6B01G390600 chr1D 80.861 418 52 18 1101 1515 160177121 160176729 1.740000e-78 303.0
23 TraesCS6B01G390600 chr3D 77.095 537 109 10 1 528 4677632 4677101 8.100000e-77 298.0
24 TraesCS6B01G390600 chr3D 75.603 373 60 19 46 403 436674115 436673759 5.160000e-34 156.0
25 TraesCS6B01G390600 chr3D 84.211 76 11 1 2567 2642 608238726 608238800 5.340000e-09 73.1
26 TraesCS6B01G390600 chr3D 94.286 35 2 0 2495 2529 311863987 311863953 2.000000e-03 54.7
27 TraesCS6B01G390600 chr1A 78.601 243 41 7 1 236 495663272 495663034 2.400000e-32 150.0
28 TraesCS6B01G390600 chr7A 72.199 482 104 20 13 485 57977639 57978099 1.880000e-23 121.0
29 TraesCS6B01G390600 chr7A 79.245 159 29 3 12 168 6622231 6622075 1.460000e-19 108.0
30 TraesCS6B01G390600 chr7A 75.342 219 36 16 35 241 646842922 646843134 5.310000e-14 89.8
31 TraesCS6B01G390600 chr2A 83.516 91 13 2 2567 2656 740369746 740369657 2.470000e-12 84.2
32 TraesCS6B01G390600 chr4A 88.406 69 7 1 2574 2642 7410490 7410557 8.880000e-12 82.4
33 TraesCS6B01G390600 chr7B 82.895 76 12 1 2567 2642 159549472 159549546 2.490000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G390600 chr6B 664833423 664837278 3855 False 7121.000000 7121 100.000000 1 3856 1 chr6B.!!$F1 3855
1 TraesCS6B01G390600 chr6D 439804633 439808239 3606 False 1059.666667 1701 94.663667 1 3076 3 chr6D.!!$F1 3075
2 TraesCS6B01G390600 chr6A 588230075 588232630 2555 False 1040.000000 1476 93.510500 655 3076 2 chr6A.!!$F2 2421
3 TraesCS6B01G390600 chrUn 43067501 43068021 520 True 797.000000 797 94.444000 3340 3855 1 chrUn.!!$R1 515
4 TraesCS6B01G390600 chr1B 575695149 575695666 517 True 797.000000 797 94.595000 3344 3856 1 chr1B.!!$R2 512
5 TraesCS6B01G390600 chr1B 8537893 8538408 515 True 789.000000 789 94.380000 3342 3854 1 chr1B.!!$R1 512
6 TraesCS6B01G390600 chr1B 646509916 646510426 510 False 780.000000 780 94.163000 3344 3856 1 chr1B.!!$F3 512
7 TraesCS6B01G390600 chr2B 770299524 770300037 513 False 793.000000 793 94.584000 3345 3856 1 chr2B.!!$F2 511
8 TraesCS6B01G390600 chr2B 756072431 756072939 508 False 784.000000 784 94.358000 3344 3856 1 chr2B.!!$F1 512
9 TraesCS6B01G390600 chr5B 3390297 3390814 517 False 789.000000 789 94.231000 3341 3856 1 chr5B.!!$F1 515
10 TraesCS6B01G390600 chr5B 687258064 687258577 513 True 778.000000 778 93.981000 3343 3856 1 chr5B.!!$R2 513
11 TraesCS6B01G390600 chr4B 134451555 134452068 513 False 782.000000 782 94.163000 3344 3856 1 chr4B.!!$F1 512
12 TraesCS6B01G390600 chr3D 4677101 4677632 531 True 298.000000 298 77.095000 1 528 1 chr3D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 516 0.190069 TACCCCACCTCGCAGGATAT 59.810 55.0 8.91 0.00 37.67 1.63 F
1164 1242 0.260816 ATCCCCTTGCATGCATGAGT 59.739 50.0 30.64 12.72 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1505 0.460109 CGTCACCAATCGATGCCAGA 60.460 55.0 0.0 0.0 0.0 3.86 R
3090 3816 0.103208 CTGTGATACGAGTCAGGCCC 59.897 60.0 0.0 0.0 0.0 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.244117 ATCTGGCGAATGGCGTGTCT 62.244 55.000 0.00 0.00 44.92 3.41
88 89 1.741770 GCGAATGGCGTGTCTTCCT 60.742 57.895 0.00 0.00 43.41 3.36
291 296 3.063084 GGAGTCGCACTCTCCGGT 61.063 66.667 0.00 0.00 44.46 5.28
385 394 3.058155 CGACGGATTTATCATCGACCTCT 60.058 47.826 8.96 0.00 38.47 3.69
417 426 1.801913 CGTGAAGGCTTCGGACTCG 60.802 63.158 21.42 15.65 37.82 4.18
419 428 0.733223 GTGAAGGCTTCGGACTCGAC 60.733 60.000 21.42 9.05 45.92 4.20
429 438 2.564471 GGACTCGACCGAGGAAGAA 58.436 57.895 21.42 0.00 45.88 2.52
446 455 3.675348 AGAATTGGGCATGGAAGATGA 57.325 42.857 0.00 0.00 0.00 2.92
493 502 0.831307 GGTGTCTCATGTCCTACCCC 59.169 60.000 0.00 0.00 0.00 4.95
500 509 2.064581 ATGTCCTACCCCACCTCGC 61.065 63.158 0.00 0.00 0.00 5.03
501 510 2.682494 GTCCTACCCCACCTCGCA 60.682 66.667 0.00 0.00 0.00 5.10
507 516 0.190069 TACCCCACCTCGCAGGATAT 59.810 55.000 8.91 0.00 37.67 1.63
523 532 4.212847 CAGGATATCGGAGCAACATTTCAG 59.787 45.833 0.00 0.00 0.00 3.02
639 697 4.203076 GCGTCCGTGGCGTATCCT 62.203 66.667 0.19 0.00 35.26 3.24
640 698 2.278596 CGTCCGTGGCGTATCCTG 60.279 66.667 0.00 0.00 35.26 3.86
641 699 2.585247 GTCCGTGGCGTATCCTGC 60.585 66.667 0.00 0.00 35.26 4.85
642 700 2.758327 TCCGTGGCGTATCCTGCT 60.758 61.111 0.00 0.00 35.26 4.24
751 817 5.641636 GTCACCACAAACATTTCCTTTGTTT 59.358 36.000 0.00 0.00 45.59 2.83
776 845 3.120442 CGGTTAGAAATTCCACACGAACC 60.120 47.826 0.00 0.00 35.68 3.62
979 1052 1.224069 GCAAGCGCAGACAGACAGAA 61.224 55.000 11.47 0.00 38.36 3.02
993 1066 0.676184 ACAGAACTTGAGAGAGCGCA 59.324 50.000 11.47 0.00 0.00 6.09
1116 1189 2.237143 TGGCAAGAAGATCAAGGTCGAT 59.763 45.455 0.00 0.00 0.00 3.59
1162 1240 0.757561 CCATCCCCTTGCATGCATGA 60.758 55.000 30.64 19.82 0.00 3.07
1164 1242 0.260816 ATCCCCTTGCATGCATGAGT 59.739 50.000 30.64 12.72 0.00 3.41
1175 1253 1.059098 TGCATGAGTCCTCCAACTGT 58.941 50.000 0.00 0.00 0.00 3.55
1186 1264 2.643551 CTCCAACTGTTGTGTTCCACT 58.356 47.619 18.38 0.00 35.11 4.00
1187 1265 3.016736 CTCCAACTGTTGTGTTCCACTT 58.983 45.455 18.38 0.00 35.11 3.16
1188 1266 3.013921 TCCAACTGTTGTGTTCCACTTC 58.986 45.455 18.38 0.00 35.11 3.01
1189 1267 2.099098 CCAACTGTTGTGTTCCACTTCC 59.901 50.000 18.38 0.00 35.11 3.46
1190 1268 1.663695 ACTGTTGTGTTCCACTTCCG 58.336 50.000 0.00 0.00 35.11 4.30
1191 1269 0.307760 CTGTTGTGTTCCACTTCCGC 59.692 55.000 0.00 0.00 35.11 5.54
1195 1273 1.092921 TGTGTTCCACTTCCGCACAC 61.093 55.000 0.00 0.00 38.59 3.82
1220 1298 1.537776 GCTCTGGTGACCATGAGATCG 60.538 57.143 25.23 6.81 33.66 3.69
1237 1315 3.899980 AGATCGATGGATGGATTCAGTGA 59.100 43.478 0.54 0.00 31.51 3.41
1241 1319 5.079643 TCGATGGATGGATTCAGTGATCTA 58.920 41.667 0.00 0.00 0.00 1.98
1245 1323 8.037166 CGATGGATGGATTCAGTGATCTAATTA 58.963 37.037 0.00 0.00 0.00 1.40
1261 1339 9.605275 TGATCTAATTAGAGGAAATCTGTGTTG 57.395 33.333 19.51 0.00 39.20 3.33
1358 1436 2.940410 CCAGTTTGTTGACAAGTACGGT 59.060 45.455 0.00 0.00 37.15 4.83
1390 1468 1.270947 CGGCTACAGGTAACCCAACAA 60.271 52.381 0.00 0.00 37.17 2.83
1483 1567 6.613755 ACAGTTACTCACGTTGCTAATTTT 57.386 33.333 0.00 0.00 0.00 1.82
1517 1601 0.179089 CGCCAGAGGAATGGTCTGAG 60.179 60.000 1.61 0.00 43.65 3.35
1561 1645 6.964934 GGCGGTGAGTAATTTTACTATTTGTG 59.035 38.462 3.05 0.00 43.64 3.33
1620 1704 1.340399 ATTCTGGCCTCTGCATCGGA 61.340 55.000 3.32 0.00 40.13 4.55
1658 1746 2.837591 TGATACATGCACACCTGTACCT 59.162 45.455 0.11 0.00 31.10 3.08
1667 1755 4.202419 TGCACACCTGTACCTGATTAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
1668 1756 4.760204 GCACACCTGTACCTGATTAAAGTT 59.240 41.667 0.00 0.00 0.00 2.66
1669 1757 5.935789 GCACACCTGTACCTGATTAAAGTTA 59.064 40.000 0.00 0.00 0.00 2.24
1670 1758 6.128363 GCACACCTGTACCTGATTAAAGTTAC 60.128 42.308 0.00 0.00 0.00 2.50
1671 1759 7.159372 CACACCTGTACCTGATTAAAGTTACT 58.841 38.462 0.00 0.00 0.00 2.24
1672 1760 7.331193 CACACCTGTACCTGATTAAAGTTACTC 59.669 40.741 0.00 0.00 0.00 2.59
1679 1767 7.241042 ACCTGATTAAAGTTACTCTAGCACA 57.759 36.000 0.00 0.00 0.00 4.57
1692 1780 8.671921 GTTACTCTAGCACATACTGTACAAGTA 58.328 37.037 0.00 2.47 45.47 2.24
1694 1782 6.319152 ACTCTAGCACATACTGTACAAGTAGG 59.681 42.308 12.49 12.49 46.39 3.18
1700 1788 4.683832 CATACTGTACAAGTAGGTGCCTC 58.316 47.826 0.00 0.00 44.61 4.70
1703 1791 5.591752 TACTGTACAAGTAGGTGCCTCACC 61.592 50.000 7.87 7.87 46.14 4.02
1723 1836 1.467342 CGGGCAGTGTAAAAGTTAGCC 59.533 52.381 0.00 0.00 39.86 3.93
1724 1837 2.510613 GGGCAGTGTAAAAGTTAGCCA 58.489 47.619 0.00 0.00 42.26 4.75
1731 1844 5.851177 CAGTGTAAAAGTTAGCCACAAATCG 59.149 40.000 0.00 0.00 0.00 3.34
1757 1910 6.300703 AGCTACATAACCGATAGAGAAGAGT 58.699 40.000 0.00 0.00 39.76 3.24
1768 1921 7.715686 ACCGATAGAGAAGAGTTGAAAGTTTTT 59.284 33.333 0.00 0.00 39.76 1.94
1829 1982 8.616076 GCAGAACAAGCATTATATACTCAACTT 58.384 33.333 0.00 0.00 0.00 2.66
1882 2035 5.941555 AGAGCTGCTTGTTTAGGTAGTAT 57.058 39.130 2.53 0.00 0.00 2.12
1888 2041 7.066284 AGCTGCTTGTTTAGGTAGTATTTGATG 59.934 37.037 0.00 0.00 0.00 3.07
1893 2046 7.566760 TGTTTAGGTAGTATTTGATGCATGG 57.433 36.000 2.46 0.00 0.00 3.66
1907 2060 4.713814 TGATGCATGGGAGAGATACTATCC 59.286 45.833 2.46 4.12 40.77 2.59
1918 2071 9.883142 GGGAGAGATACTATCCTATTTGATTTG 57.117 37.037 11.34 0.00 41.20 2.32
1931 2084 8.792633 TCCTATTTGATTTGTTAACTCTGTTGG 58.207 33.333 7.22 0.00 0.00 3.77
1932 2085 8.792633 CCTATTTGATTTGTTAACTCTGTTGGA 58.207 33.333 7.22 0.00 0.00 3.53
1941 2094 8.974060 TTGTTAACTCTGTTGGATATATTCCC 57.026 34.615 7.22 0.00 44.77 3.97
1942 2095 7.514721 TGTTAACTCTGTTGGATATATTCCCC 58.485 38.462 7.22 0.00 44.77 4.81
1943 2096 5.584551 AACTCTGTTGGATATATTCCCCC 57.415 43.478 0.00 0.00 44.77 5.40
1944 2097 3.583086 ACTCTGTTGGATATATTCCCCCG 59.417 47.826 0.00 0.00 44.77 5.73
1945 2098 2.304761 TCTGTTGGATATATTCCCCCGC 59.695 50.000 0.00 0.00 44.77 6.13
1946 2099 2.039746 CTGTTGGATATATTCCCCCGCA 59.960 50.000 0.00 0.00 44.77 5.69
1947 2100 2.443632 TGTTGGATATATTCCCCCGCAA 59.556 45.455 0.00 0.00 44.77 4.85
1948 2101 3.117474 TGTTGGATATATTCCCCCGCAAA 60.117 43.478 0.00 0.00 44.77 3.68
1949 2102 3.885976 TGGATATATTCCCCCGCAAAA 57.114 42.857 0.00 0.00 44.77 2.44
1950 2103 4.186077 TGGATATATTCCCCCGCAAAAA 57.814 40.909 0.00 0.00 44.77 1.94
2026 2179 7.545362 AGTAATCTGTGATGACAATGCTAAC 57.455 36.000 0.00 0.00 0.00 2.34
2079 2233 6.939551 TTCAAACGTGTACTAAGCATAGAC 57.060 37.500 2.38 0.00 33.15 2.59
2197 2777 5.724370 TCATATGTGATTCCCCGTATATGGT 59.276 40.000 10.16 0.00 32.28 3.55
2211 2791 4.156922 CGTATATGGTTCCTTTGGTTTGCA 59.843 41.667 0.00 0.00 0.00 4.08
2217 2797 3.576550 GGTTCCTTTGGTTTGCAGGATTA 59.423 43.478 0.00 0.00 36.56 1.75
2233 2813 9.912634 TTGCAGGATTATAAAAACTCAAGAAAG 57.087 29.630 0.00 0.00 0.00 2.62
2366 3049 7.953005 TCATGCATATTTTGAAAAGGAGGTA 57.047 32.000 0.00 0.00 0.00 3.08
2377 3060 8.990163 TTTGAAAAGGAGGTAAAAGTAGATGT 57.010 30.769 0.00 0.00 0.00 3.06
2389 3072 8.188799 GGTAAAAGTAGATGTTAAAATCCCTGC 58.811 37.037 1.75 0.00 0.00 4.85
2390 3073 7.775053 AAAAGTAGATGTTAAAATCCCTGCA 57.225 32.000 1.75 0.00 0.00 4.41
2393 3076 7.961326 AGTAGATGTTAAAATCCCTGCATTT 57.039 32.000 1.75 0.00 0.00 2.32
2394 3077 8.000780 AGTAGATGTTAAAATCCCTGCATTTC 57.999 34.615 1.75 0.00 0.00 2.17
2401 3084 5.830799 AAAATCCCTGCATTTCTCCTTTT 57.169 34.783 0.00 0.00 0.00 2.27
2405 3088 5.982890 TCCCTGCATTTCTCCTTTTAAAG 57.017 39.130 0.00 0.00 0.00 1.85
2407 3090 6.548321 TCCCTGCATTTCTCCTTTTAAAGTA 58.452 36.000 3.91 0.00 0.00 2.24
2414 3097 8.023706 GCATTTCTCCTTTTAAAGTAGGTTCAG 58.976 37.037 3.91 0.00 33.15 3.02
2433 3116 8.309656 AGGTTCAGATGAAAAATTTCCTCATTC 58.690 33.333 13.93 5.28 35.23 2.67
2444 3127 9.571816 AAAAATTTCCTCATTCTTTATTTGCCA 57.428 25.926 0.00 0.00 0.00 4.92
2451 3134 5.976458 TCATTCTTTATTTGCCACATTCCC 58.024 37.500 0.00 0.00 0.00 3.97
2454 3137 7.398618 TCATTCTTTATTTGCCACATTCCCTTA 59.601 33.333 0.00 0.00 0.00 2.69
2465 3148 3.323403 CACATTCCCTTAAACCAAAGGCA 59.677 43.478 0.00 0.00 44.07 4.75
2469 3152 3.430453 TCCCTTAAACCAAAGGCATGAG 58.570 45.455 0.00 0.00 44.07 2.90
2478 3161 5.636903 ACCAAAGGCATGAGTAGTATCAT 57.363 39.130 0.00 0.00 40.59 2.45
2486 3169 5.280164 GGCATGAGTAGTATCATCATGGGAA 60.280 44.000 17.62 0.00 46.69 3.97
2487 3170 6.233434 GCATGAGTAGTATCATCATGGGAAA 58.767 40.000 17.62 0.00 46.69 3.13
2488 3171 6.712095 GCATGAGTAGTATCATCATGGGAAAA 59.288 38.462 17.62 0.00 46.69 2.29
2489 3172 7.229306 GCATGAGTAGTATCATCATGGGAAAAA 59.771 37.037 17.62 0.00 46.69 1.94
2533 3220 2.728007 ACCAAAGGAGCCATAAGAAGC 58.272 47.619 0.00 0.00 0.00 3.86
2540 3227 2.439880 GGAGCCATAAGAAGCTTAGGGT 59.560 50.000 16.37 11.33 40.11 4.34
2558 3245 9.750125 GCTTAGGGTTTATTTGGATAGAAAATG 57.250 33.333 0.00 0.00 0.00 2.32
2577 3264 8.947115 AGAAAATGTTACTCCAATAAGTACAGC 58.053 33.333 0.00 0.00 31.57 4.40
2578 3265 8.630054 AAAATGTTACTCCAATAAGTACAGCA 57.370 30.769 0.00 0.00 31.57 4.41
2579 3266 7.849804 AATGTTACTCCAATAAGTACAGCAG 57.150 36.000 0.00 0.00 31.57 4.24
2580 3267 6.354794 TGTTACTCCAATAAGTACAGCAGT 57.645 37.500 0.00 0.00 31.57 4.40
2581 3268 6.395629 TGTTACTCCAATAAGTACAGCAGTC 58.604 40.000 0.00 0.00 31.57 3.51
2582 3269 6.210784 TGTTACTCCAATAAGTACAGCAGTCT 59.789 38.462 0.00 0.00 31.57 3.24
2583 3270 5.746990 ACTCCAATAAGTACAGCAGTCTT 57.253 39.130 0.00 0.00 0.00 3.01
2584 3271 5.482908 ACTCCAATAAGTACAGCAGTCTTG 58.517 41.667 0.00 0.00 0.00 3.02
2585 3272 5.246203 ACTCCAATAAGTACAGCAGTCTTGA 59.754 40.000 0.00 0.00 0.00 3.02
2586 3273 6.109156 TCCAATAAGTACAGCAGTCTTGAA 57.891 37.500 0.00 0.00 0.00 2.69
2587 3274 5.932303 TCCAATAAGTACAGCAGTCTTGAAC 59.068 40.000 0.00 0.00 0.00 3.18
2588 3275 5.934625 CCAATAAGTACAGCAGTCTTGAACT 59.065 40.000 0.00 0.00 39.44 3.01
2589 3276 7.039293 TCCAATAAGTACAGCAGTCTTGAACTA 60.039 37.037 0.00 0.00 36.07 2.24
2590 3277 7.602644 CCAATAAGTACAGCAGTCTTGAACTAA 59.397 37.037 0.00 0.00 36.07 2.24
2591 3278 8.651588 CAATAAGTACAGCAGTCTTGAACTAAG 58.348 37.037 0.00 0.00 36.07 2.18
2592 3279 5.140747 AGTACAGCAGTCTTGAACTAAGG 57.859 43.478 0.00 0.00 36.07 2.69
2593 3280 4.589374 AGTACAGCAGTCTTGAACTAAGGT 59.411 41.667 0.00 0.00 36.07 3.50
2594 3281 4.423625 ACAGCAGTCTTGAACTAAGGTT 57.576 40.909 0.00 0.00 36.07 3.50
2595 3282 4.130118 ACAGCAGTCTTGAACTAAGGTTG 58.870 43.478 0.00 0.00 36.07 3.77
2596 3283 4.141711 ACAGCAGTCTTGAACTAAGGTTGA 60.142 41.667 0.00 0.00 36.07 3.18
2597 3284 4.816385 CAGCAGTCTTGAACTAAGGTTGAA 59.184 41.667 0.00 0.00 36.07 2.69
2598 3285 4.816925 AGCAGTCTTGAACTAAGGTTGAAC 59.183 41.667 0.00 0.00 36.07 3.18
2599 3286 4.816925 GCAGTCTTGAACTAAGGTTGAACT 59.183 41.667 0.00 0.00 36.07 3.01
2600 3287 5.989777 GCAGTCTTGAACTAAGGTTGAACTA 59.010 40.000 0.00 0.00 36.07 2.24
2601 3288 6.482308 GCAGTCTTGAACTAAGGTTGAACTAA 59.518 38.462 0.00 0.00 36.07 2.24
2602 3289 7.173390 GCAGTCTTGAACTAAGGTTGAACTAAT 59.827 37.037 0.00 0.00 36.07 1.73
2603 3290 8.713271 CAGTCTTGAACTAAGGTTGAACTAATC 58.287 37.037 0.00 0.00 36.07 1.75
2604 3291 8.652290 AGTCTTGAACTAAGGTTGAACTAATCT 58.348 33.333 0.00 0.00 36.07 2.40
2605 3292 9.274206 GTCTTGAACTAAGGTTGAACTAATCTT 57.726 33.333 0.00 0.00 42.31 2.40
2638 3325 8.888579 AATTATGACACTTACTTTAGATCGGG 57.111 34.615 0.00 0.00 0.00 5.14
2639 3326 7.649533 TTATGACACTTACTTTAGATCGGGA 57.350 36.000 0.00 0.00 0.00 5.14
2640 3327 5.578005 TGACACTTACTTTAGATCGGGAG 57.422 43.478 0.00 0.00 0.00 4.30
2641 3328 4.401519 TGACACTTACTTTAGATCGGGAGG 59.598 45.833 0.00 0.00 0.00 4.30
2642 3329 4.607239 ACACTTACTTTAGATCGGGAGGA 58.393 43.478 0.00 0.00 0.00 3.71
2643 3330 5.209659 ACACTTACTTTAGATCGGGAGGAT 58.790 41.667 0.00 0.00 38.35 3.24
2644 3331 5.661759 ACACTTACTTTAGATCGGGAGGATT 59.338 40.000 0.00 0.00 34.82 3.01
2645 3332 6.837568 ACACTTACTTTAGATCGGGAGGATTA 59.162 38.462 0.00 0.00 34.82 1.75
2646 3333 7.509659 ACACTTACTTTAGATCGGGAGGATTAT 59.490 37.037 0.00 0.00 34.82 1.28
2647 3334 8.368668 CACTTACTTTAGATCGGGAGGATTATT 58.631 37.037 0.00 0.00 34.82 1.40
2648 3335 8.935741 ACTTACTTTAGATCGGGAGGATTATTT 58.064 33.333 0.00 0.00 34.82 1.40
2649 3336 9.780186 CTTACTTTAGATCGGGAGGATTATTTT 57.220 33.333 0.00 0.00 34.82 1.82
2651 3338 8.678593 ACTTTAGATCGGGAGGATTATTTTTC 57.321 34.615 0.00 0.00 34.82 2.29
2657 3344 8.055790 AGATCGGGAGGATTATTTTTCTTTTCT 58.944 33.333 0.00 0.00 34.82 2.52
2669 3356 6.641176 TTTTTCTTTTCTCTTCAAAACGCC 57.359 33.333 0.00 0.00 0.00 5.68
2670 3357 5.576447 TTTCTTTTCTCTTCAAAACGCCT 57.424 34.783 0.00 0.00 0.00 5.52
2673 3360 2.234300 TTCTCTTCAAAACGCCTCGT 57.766 45.000 0.00 0.00 43.97 4.18
2676 3379 1.457303 CTCTTCAAAACGCCTCGTGAG 59.543 52.381 0.00 0.00 39.99 3.51
2679 3382 1.497991 TCAAAACGCCTCGTGAGAAG 58.502 50.000 0.00 0.00 39.99 2.85
2698 3418 8.037758 GTGAGAAGGAAGATGATTTAGAAGTGA 58.962 37.037 0.00 0.00 0.00 3.41
2707 3427 7.899974 AGATGATTTAGAAGTGATTTCGTTCG 58.100 34.615 0.00 0.00 40.86 3.95
2716 3436 3.612860 AGTGATTTCGTTCGAATTCTCCG 59.387 43.478 21.55 0.00 0.00 4.63
2738 3458 4.327680 GACAAAACCAGTAAGCTGATCCT 58.672 43.478 0.00 0.00 45.28 3.24
2916 3636 2.283617 GCATGCACGTCTCTGTAATCTG 59.716 50.000 14.21 0.00 0.00 2.90
3076 3802 0.686441 TATGCACGCACCCTCTACCT 60.686 55.000 0.00 0.00 0.00 3.08
3077 3803 0.686441 ATGCACGCACCCTCTACCTA 60.686 55.000 0.00 0.00 0.00 3.08
3078 3804 1.320344 TGCACGCACCCTCTACCTAG 61.320 60.000 0.00 0.00 0.00 3.02
3079 3805 2.017559 GCACGCACCCTCTACCTAGG 62.018 65.000 7.41 7.41 36.30 3.02
3080 3806 0.683504 CACGCACCCTCTACCTAGGT 60.684 60.000 20.57 20.57 34.56 3.08
3081 3807 0.921896 ACGCACCCTCTACCTAGGTA 59.078 55.000 20.60 20.60 34.56 3.08
3082 3808 1.498145 ACGCACCCTCTACCTAGGTAT 59.502 52.381 22.02 4.05 34.56 2.73
3083 3809 1.887198 CGCACCCTCTACCTAGGTATG 59.113 57.143 22.02 16.99 34.56 2.39
3084 3810 2.752154 CGCACCCTCTACCTAGGTATGT 60.752 54.545 22.02 13.49 34.56 2.29
3085 3811 2.628657 GCACCCTCTACCTAGGTATGTG 59.371 54.545 22.02 22.95 34.56 3.21
3086 3812 3.231818 CACCCTCTACCTAGGTATGTGG 58.768 54.545 22.02 21.37 34.56 4.17
3087 3813 2.179424 ACCCTCTACCTAGGTATGTGGG 59.821 54.545 31.71 31.71 37.86 4.61
3088 3814 2.449730 CCCTCTACCTAGGTATGTGGGA 59.550 54.545 30.92 21.39 36.18 4.37
3089 3815 3.498334 CCTCTACCTAGGTATGTGGGAC 58.502 54.545 22.02 0.00 31.46 4.46
3090 3816 3.147629 CTCTACCTAGGTATGTGGGACG 58.852 54.545 22.02 8.04 0.00 4.79
3091 3817 2.158564 TCTACCTAGGTATGTGGGACGG 60.159 54.545 22.02 7.33 0.00 4.79
3092 3818 0.398098 ACCTAGGTATGTGGGACGGG 60.398 60.000 14.41 0.00 0.00 5.28
3093 3819 1.746517 CTAGGTATGTGGGACGGGC 59.253 63.158 0.00 0.00 0.00 6.13
3094 3820 1.755393 CTAGGTATGTGGGACGGGCC 61.755 65.000 0.00 0.00 0.00 5.80
3095 3821 2.246513 TAGGTATGTGGGACGGGCCT 62.247 60.000 0.84 0.00 36.66 5.19
3096 3822 2.189521 GTATGTGGGACGGGCCTG 59.810 66.667 11.02 11.02 36.66 4.85
3097 3823 2.039787 TATGTGGGACGGGCCTGA 59.960 61.111 21.41 0.00 36.66 3.86
3098 3824 2.363975 TATGTGGGACGGGCCTGAC 61.364 63.158 21.41 12.98 36.66 3.51
3099 3825 2.815684 TATGTGGGACGGGCCTGACT 62.816 60.000 21.41 0.00 36.66 3.41
3100 3826 4.083862 GTGGGACGGGCCTGACTC 62.084 72.222 21.41 13.81 36.66 3.36
3103 3829 2.753043 GGACGGGCCTGACTCGTA 60.753 66.667 21.41 0.00 37.25 3.43
3104 3830 2.125961 GGACGGGCCTGACTCGTAT 61.126 63.158 21.41 0.00 37.25 3.06
3105 3831 1.359475 GACGGGCCTGACTCGTATC 59.641 63.158 21.41 0.00 37.25 2.24
3106 3832 1.379443 ACGGGCCTGACTCGTATCA 60.379 57.895 21.41 0.00 35.23 2.15
3107 3833 1.065928 CGGGCCTGACTCGTATCAC 59.934 63.158 5.28 0.00 0.00 3.06
3108 3834 1.663379 CGGGCCTGACTCGTATCACA 61.663 60.000 5.28 0.00 0.00 3.58
3109 3835 0.103208 GGGCCTGACTCGTATCACAG 59.897 60.000 0.84 0.00 0.00 3.66
3110 3836 1.103803 GGCCTGACTCGTATCACAGA 58.896 55.000 0.00 0.00 32.90 3.41
3111 3837 1.066303 GGCCTGACTCGTATCACAGAG 59.934 57.143 0.00 0.00 40.16 3.35
3113 3839 2.478709 GCCTGACTCGTATCACAGAGTG 60.479 54.545 2.62 0.00 46.52 3.51
3114 3840 2.478709 CCTGACTCGTATCACAGAGTGC 60.479 54.545 2.62 0.00 46.52 4.40
3115 3841 1.130561 TGACTCGTATCACAGAGTGCG 59.869 52.381 2.62 0.00 46.52 5.34
3116 3842 0.452184 ACTCGTATCACAGAGTGCGG 59.548 55.000 0.00 0.00 45.03 5.69
3117 3843 0.248661 CTCGTATCACAGAGTGCGGG 60.249 60.000 0.00 0.00 32.98 6.13
3118 3844 1.878522 CGTATCACAGAGTGCGGGC 60.879 63.158 0.00 0.00 32.98 6.13
3119 3845 1.218047 GTATCACAGAGTGCGGGCA 59.782 57.895 0.00 0.00 32.98 5.36
3120 3846 0.391130 GTATCACAGAGTGCGGGCAA 60.391 55.000 0.00 0.00 32.98 4.52
3121 3847 0.108186 TATCACAGAGTGCGGGCAAG 60.108 55.000 0.00 0.00 32.98 4.01
3122 3848 2.809861 ATCACAGAGTGCGGGCAAGG 62.810 60.000 0.00 0.00 32.98 3.61
3123 3849 3.560251 ACAGAGTGCGGGCAAGGT 61.560 61.111 0.00 0.00 0.00 3.50
3124 3850 2.281761 CAGAGTGCGGGCAAGGTT 60.282 61.111 0.00 0.00 0.00 3.50
3125 3851 1.003839 CAGAGTGCGGGCAAGGTTA 60.004 57.895 0.00 0.00 0.00 2.85
3126 3852 0.605319 CAGAGTGCGGGCAAGGTTAA 60.605 55.000 0.00 0.00 0.00 2.01
3127 3853 0.321653 AGAGTGCGGGCAAGGTTAAG 60.322 55.000 0.00 0.00 0.00 1.85
3128 3854 1.303317 AGTGCGGGCAAGGTTAAGG 60.303 57.895 0.00 0.00 0.00 2.69
3129 3855 2.675075 TGCGGGCAAGGTTAAGGC 60.675 61.111 0.00 0.00 0.00 4.35
3130 3856 3.449227 GCGGGCAAGGTTAAGGCC 61.449 66.667 0.00 0.00 46.99 5.19
3134 3860 2.201927 GGCAAGGTTAAGGCCATGG 58.798 57.895 7.63 7.63 46.92 3.66
3135 3861 0.324275 GGCAAGGTTAAGGCCATGGA 60.324 55.000 18.40 0.00 46.92 3.41
3136 3862 1.689258 GGCAAGGTTAAGGCCATGGAT 60.689 52.381 18.40 2.80 46.92 3.41
3137 3863 2.424234 GGCAAGGTTAAGGCCATGGATA 60.424 50.000 18.40 1.69 46.92 2.59
3138 3864 3.295973 GCAAGGTTAAGGCCATGGATAA 58.704 45.455 18.40 8.43 0.00 1.75
3139 3865 3.319122 GCAAGGTTAAGGCCATGGATAAG 59.681 47.826 18.40 1.13 0.00 1.73
3140 3866 4.792068 CAAGGTTAAGGCCATGGATAAGA 58.208 43.478 18.40 0.00 0.00 2.10
3141 3867 4.439253 AGGTTAAGGCCATGGATAAGAC 57.561 45.455 18.40 7.67 0.00 3.01
3142 3868 3.139077 GGTTAAGGCCATGGATAAGACG 58.861 50.000 18.40 0.00 0.00 4.18
3143 3869 2.543777 TAAGGCCATGGATAAGACGC 57.456 50.000 18.40 0.00 0.00 5.19
3144 3870 0.546122 AAGGCCATGGATAAGACGCA 59.454 50.000 18.40 0.00 0.00 5.24
3145 3871 0.179045 AGGCCATGGATAAGACGCAC 60.179 55.000 18.40 0.00 0.00 5.34
3146 3872 0.463654 GGCCATGGATAAGACGCACA 60.464 55.000 18.40 0.00 0.00 4.57
3147 3873 1.597742 GCCATGGATAAGACGCACAT 58.402 50.000 18.40 0.00 0.00 3.21
3148 3874 1.265095 GCCATGGATAAGACGCACATG 59.735 52.381 18.40 0.00 38.82 3.21
3149 3875 1.265095 CCATGGATAAGACGCACATGC 59.735 52.381 5.56 0.00 38.02 4.06
3150 3876 1.941975 CATGGATAAGACGCACATGCA 59.058 47.619 4.49 0.00 42.21 3.96
3151 3877 1.368641 TGGATAAGACGCACATGCAC 58.631 50.000 4.49 0.00 42.21 4.57
3152 3878 1.066215 TGGATAAGACGCACATGCACT 60.066 47.619 4.49 0.00 42.21 4.40
3153 3879 2.009774 GGATAAGACGCACATGCACTT 58.990 47.619 14.55 14.55 42.21 3.16
3154 3880 2.030946 GGATAAGACGCACATGCACTTC 59.969 50.000 13.85 3.57 42.21 3.01
3155 3881 2.162319 TAAGACGCACATGCACTTCA 57.838 45.000 13.85 3.02 42.21 3.02
3156 3882 1.308047 AAGACGCACATGCACTTCAA 58.692 45.000 4.49 0.00 42.21 2.69
3157 3883 1.308047 AGACGCACATGCACTTCAAA 58.692 45.000 4.49 0.00 42.21 2.69
3158 3884 1.881973 AGACGCACATGCACTTCAAAT 59.118 42.857 4.49 0.00 42.21 2.32
3159 3885 2.294233 AGACGCACATGCACTTCAAATT 59.706 40.909 4.49 0.00 42.21 1.82
3160 3886 3.052036 GACGCACATGCACTTCAAATTT 58.948 40.909 4.49 0.00 42.21 1.82
3161 3887 3.052036 ACGCACATGCACTTCAAATTTC 58.948 40.909 4.49 0.00 42.21 2.17
3162 3888 3.051327 CGCACATGCACTTCAAATTTCA 58.949 40.909 4.49 0.00 42.21 2.69
3163 3889 3.120616 CGCACATGCACTTCAAATTTCAG 59.879 43.478 4.49 0.00 42.21 3.02
3164 3890 4.053295 GCACATGCACTTCAAATTTCAGT 58.947 39.130 0.00 0.00 41.59 3.41
3165 3891 4.508861 GCACATGCACTTCAAATTTCAGTT 59.491 37.500 0.00 0.00 41.59 3.16
3166 3892 5.006941 GCACATGCACTTCAAATTTCAGTTT 59.993 36.000 0.00 0.00 41.59 2.66
3167 3893 6.457257 GCACATGCACTTCAAATTTCAGTTTT 60.457 34.615 0.00 0.00 41.59 2.43
3168 3894 7.121272 CACATGCACTTCAAATTTCAGTTTTC 58.879 34.615 0.00 0.00 0.00 2.29
3169 3895 6.817641 ACATGCACTTCAAATTTCAGTTTTCA 59.182 30.769 0.00 0.00 0.00 2.69
3170 3896 6.645700 TGCACTTCAAATTTCAGTTTTCAC 57.354 33.333 0.00 0.00 0.00 3.18
3171 3897 5.580297 TGCACTTCAAATTTCAGTTTTCACC 59.420 36.000 0.00 0.00 0.00 4.02
3172 3898 5.580297 GCACTTCAAATTTCAGTTTTCACCA 59.420 36.000 0.00 0.00 0.00 4.17
3173 3899 6.455513 GCACTTCAAATTTCAGTTTTCACCAC 60.456 38.462 0.00 0.00 0.00 4.16
3174 3900 5.804979 ACTTCAAATTTCAGTTTTCACCACG 59.195 36.000 0.00 0.00 0.00 4.94
3175 3901 5.568685 TCAAATTTCAGTTTTCACCACGA 57.431 34.783 0.00 0.00 0.00 4.35
3176 3902 5.955488 TCAAATTTCAGTTTTCACCACGAA 58.045 33.333 0.00 0.00 0.00 3.85
3177 3903 6.568869 TCAAATTTCAGTTTTCACCACGAAT 58.431 32.000 0.00 0.00 32.32 3.34
3178 3904 6.695278 TCAAATTTCAGTTTTCACCACGAATC 59.305 34.615 0.00 0.00 32.32 2.52
3179 3905 3.870723 TTCAGTTTTCACCACGAATCG 57.129 42.857 0.00 0.00 32.32 3.34
3180 3906 3.100658 TCAGTTTTCACCACGAATCGA 57.899 42.857 10.55 0.00 32.32 3.59
3181 3907 3.459145 TCAGTTTTCACCACGAATCGAA 58.541 40.909 10.55 0.00 32.32 3.71
3182 3908 3.246699 TCAGTTTTCACCACGAATCGAAC 59.753 43.478 10.55 1.03 32.32 3.95
3183 3909 2.546789 AGTTTTCACCACGAATCGAACC 59.453 45.455 10.55 0.00 32.32 3.62
3184 3910 2.242047 TTTCACCACGAATCGAACCA 57.758 45.000 10.55 0.00 32.32 3.67
3185 3911 2.242047 TTCACCACGAATCGAACCAA 57.758 45.000 10.55 0.00 0.00 3.67
3186 3912 2.465860 TCACCACGAATCGAACCAAT 57.534 45.000 10.55 0.00 0.00 3.16
3187 3913 3.596310 TCACCACGAATCGAACCAATA 57.404 42.857 10.55 0.00 0.00 1.90
3188 3914 3.927854 TCACCACGAATCGAACCAATAA 58.072 40.909 10.55 0.00 0.00 1.40
3189 3915 4.509616 TCACCACGAATCGAACCAATAAT 58.490 39.130 10.55 0.00 0.00 1.28
3190 3916 5.662456 TCACCACGAATCGAACCAATAATA 58.338 37.500 10.55 0.00 0.00 0.98
3191 3917 5.521010 TCACCACGAATCGAACCAATAATAC 59.479 40.000 10.55 0.00 0.00 1.89
3192 3918 5.292345 CACCACGAATCGAACCAATAATACA 59.708 40.000 10.55 0.00 0.00 2.29
3193 3919 6.018262 CACCACGAATCGAACCAATAATACAT 60.018 38.462 10.55 0.00 0.00 2.29
3194 3920 7.170151 CACCACGAATCGAACCAATAATACATA 59.830 37.037 10.55 0.00 0.00 2.29
3195 3921 7.876068 ACCACGAATCGAACCAATAATACATAT 59.124 33.333 10.55 0.00 0.00 1.78
3196 3922 9.361315 CCACGAATCGAACCAATAATACATATA 57.639 33.333 10.55 0.00 0.00 0.86
3225 3951 9.878667 TTGTGACTTAAGAATTAATACCATCGA 57.121 29.630 10.09 0.00 40.24 3.59
3226 3952 9.878667 TGTGACTTAAGAATTAATACCATCGAA 57.121 29.630 10.09 0.00 40.24 3.71
3242 3968 7.940178 ACCATCGAAAACCTTTTTCAAATAC 57.060 32.000 11.01 0.00 0.00 1.89
3243 3969 6.639279 ACCATCGAAAACCTTTTTCAAATACG 59.361 34.615 11.01 0.00 0.00 3.06
3244 3970 6.858993 CCATCGAAAACCTTTTTCAAATACGA 59.141 34.615 11.01 0.00 0.00 3.43
3245 3971 7.380065 CCATCGAAAACCTTTTTCAAATACGAA 59.620 33.333 11.01 0.00 0.00 3.85
3246 3972 8.911662 CATCGAAAACCTTTTTCAAATACGAAT 58.088 29.630 11.01 0.00 0.00 3.34
3247 3973 8.859517 TCGAAAACCTTTTTCAAATACGAATT 57.140 26.923 11.01 0.00 0.00 2.17
3248 3974 9.303537 TCGAAAACCTTTTTCAAATACGAATTT 57.696 25.926 11.01 0.00 35.65 1.82
3267 3993 9.275398 ACGAATTTAGGTATAAGTTTTGTCACA 57.725 29.630 0.00 0.00 0.00 3.58
3268 3994 9.537848 CGAATTTAGGTATAAGTTTTGTCACAC 57.462 33.333 0.00 0.00 0.00 3.82
3274 4000 8.331730 AGGTATAAGTTTTGTCACACATAACC 57.668 34.615 6.41 0.00 39.71 2.85
3275 4001 7.392393 AGGTATAAGTTTTGTCACACATAACCC 59.608 37.037 6.41 2.03 39.71 4.11
3276 4002 7.175293 GGTATAAGTTTTGTCACACATAACCCA 59.825 37.037 6.41 0.00 39.71 4.51
3277 4003 7.775053 ATAAGTTTTGTCACACATAACCCAT 57.225 32.000 6.41 0.00 39.71 4.00
3278 4004 8.871629 ATAAGTTTTGTCACACATAACCCATA 57.128 30.769 6.41 0.79 39.71 2.74
3279 4005 7.775053 AAGTTTTGTCACACATAACCCATAT 57.225 32.000 6.41 0.00 39.71 1.78
3280 4006 7.775053 AGTTTTGTCACACATAACCCATATT 57.225 32.000 6.41 0.00 39.71 1.28
3281 4007 8.871629 AGTTTTGTCACACATAACCCATATTA 57.128 30.769 6.41 0.00 39.71 0.98
3282 4008 9.474313 AGTTTTGTCACACATAACCCATATTAT 57.526 29.630 6.41 0.00 39.71 1.28
3283 4009 9.515020 GTTTTGTCACACATAACCCATATTATG 57.485 33.333 4.38 4.38 44.69 1.90
3321 4047 7.149569 TGATCAAACATTCAAACTCTGATCC 57.850 36.000 0.00 0.00 37.82 3.36
3322 4048 6.716173 TGATCAAACATTCAAACTCTGATCCA 59.284 34.615 0.00 0.00 37.82 3.41
3323 4049 6.317789 TCAAACATTCAAACTCTGATCCAC 57.682 37.500 0.00 0.00 32.78 4.02
3324 4050 5.241506 TCAAACATTCAAACTCTGATCCACC 59.758 40.000 0.00 0.00 32.78 4.61
3325 4051 3.690460 ACATTCAAACTCTGATCCACCC 58.310 45.455 0.00 0.00 32.78 4.61
3326 4052 2.879103 TTCAAACTCTGATCCACCCC 57.121 50.000 0.00 0.00 32.78 4.95
3327 4053 1.741028 TCAAACTCTGATCCACCCCA 58.259 50.000 0.00 0.00 0.00 4.96
3328 4054 2.278245 TCAAACTCTGATCCACCCCAT 58.722 47.619 0.00 0.00 0.00 4.00
3329 4055 2.239654 TCAAACTCTGATCCACCCCATC 59.760 50.000 0.00 0.00 0.00 3.51
3330 4056 2.240667 CAAACTCTGATCCACCCCATCT 59.759 50.000 0.00 0.00 0.00 2.90
3331 4057 1.799933 ACTCTGATCCACCCCATCTC 58.200 55.000 0.00 0.00 0.00 2.75
3332 4058 1.055040 CTCTGATCCACCCCATCTCC 58.945 60.000 0.00 0.00 0.00 3.71
3333 4059 0.343018 TCTGATCCACCCCATCTCCA 59.657 55.000 0.00 0.00 0.00 3.86
3334 4060 1.216064 CTGATCCACCCCATCTCCAA 58.784 55.000 0.00 0.00 0.00 3.53
3335 4061 1.779092 CTGATCCACCCCATCTCCAAT 59.221 52.381 0.00 0.00 0.00 3.16
3336 4062 1.496001 TGATCCACCCCATCTCCAATG 59.504 52.381 0.00 0.00 0.00 2.82
3337 4063 0.855598 ATCCACCCCATCTCCAATGG 59.144 55.000 0.00 0.00 38.88 3.16
3338 4064 1.456331 CCACCCCATCTCCAATGGC 60.456 63.158 0.00 0.00 37.85 4.40
3339 4065 1.456331 CACCCCATCTCCAATGGCC 60.456 63.158 0.00 0.00 37.85 5.36
3340 4066 1.623686 ACCCCATCTCCAATGGCCT 60.624 57.895 3.32 0.00 37.85 5.19
3360 4086 5.314529 GCCTTTCACTAGTAGAAAAACCCT 58.685 41.667 16.20 0.00 34.84 4.34
3376 4102 2.836667 ACCCTTATTAGTCCCGGTTGA 58.163 47.619 0.00 0.00 0.00 3.18
3557 4283 1.889829 CAACCGGAACCAAAAGGCATA 59.110 47.619 9.46 0.00 0.00 3.14
3584 4310 1.980772 AGCATTTCAGTGGCTGGGC 60.981 57.895 0.00 0.00 36.34 5.36
3590 4318 2.373335 TTCAGTGGCTGGGCTTTTTA 57.627 45.000 0.00 0.00 31.51 1.52
3713 4450 0.935831 CGTGTTTGGTCGACGCTACA 60.936 55.000 9.92 10.03 0.00 2.74
3839 4577 1.068434 CTCCTTCTCCGAGAGATTGGC 59.932 57.143 0.00 0.00 38.56 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.082523 CTCCGGCGAGGCAAGGAA 62.083 66.667 9.30 0.00 40.77 3.36
131 132 2.515057 GGTTGCACGTCCACCACA 60.515 61.111 0.00 0.00 0.00 4.17
241 246 3.749064 GTCGCGAGGGCTGTCTCA 61.749 66.667 10.24 0.00 36.88 3.27
349 357 3.637273 GTCGTGTTCCAGGGGGCT 61.637 66.667 0.00 0.00 0.00 5.19
385 394 1.471287 CTTCACGGTACTGGTCGATGA 59.529 52.381 6.65 0.00 0.00 2.92
417 426 0.035439 TGCCCAATTCTTCCTCGGTC 60.035 55.000 0.00 0.00 0.00 4.79
419 428 1.027357 CATGCCCAATTCTTCCTCGG 58.973 55.000 0.00 0.00 0.00 4.63
429 438 1.683943 CGTCATCTTCCATGCCCAAT 58.316 50.000 0.00 0.00 0.00 3.16
493 502 0.242286 CTCCGATATCCTGCGAGGTG 59.758 60.000 0.00 0.00 36.53 4.00
500 509 4.129380 TGAAATGTTGCTCCGATATCCTG 58.871 43.478 0.00 0.00 0.00 3.86
501 510 4.384056 CTGAAATGTTGCTCCGATATCCT 58.616 43.478 0.00 0.00 0.00 3.24
507 516 0.322456 CCCCTGAAATGTTGCTCCGA 60.322 55.000 0.00 0.00 0.00 4.55
607 665 0.872021 GACGCGCCCAGACAAGATAG 60.872 60.000 5.73 0.00 0.00 2.08
751 817 2.613474 CGTGTGGAATTTCTAACCGGGA 60.613 50.000 6.32 0.00 0.00 5.14
776 845 0.666913 ACGTTATCCTCATCGGACCG 59.333 55.000 7.84 7.84 46.80 4.79
979 1052 2.431601 GCGTGCGCTCTCTCAAGT 60.432 61.111 9.73 0.00 38.26 3.16
993 1066 4.521062 GAGGCTGCCATCTCGCGT 62.521 66.667 22.65 0.00 0.00 6.01
1116 1189 1.754234 GGACGTACCGAGGGGCTTA 60.754 63.158 0.00 0.00 36.48 3.09
1162 1240 2.421529 GGAACACAACAGTTGGAGGACT 60.422 50.000 17.76 0.00 34.12 3.85
1164 1242 1.562008 TGGAACACAACAGTTGGAGGA 59.438 47.619 17.76 0.00 34.12 3.71
1190 1268 3.052082 ACCAGAGCATGCGTGTGC 61.052 61.111 13.01 4.03 45.38 4.57
1191 1269 1.668793 TCACCAGAGCATGCGTGTG 60.669 57.895 18.85 19.05 33.96 3.82
1195 1273 2.046988 TGGTCACCAGAGCATGCG 60.047 61.111 13.01 0.00 46.52 4.73
1220 1298 9.381033 CTAATTAGATCACTGAATCCATCCATC 57.619 37.037 6.64 0.00 0.00 3.51
1237 1315 8.270744 AGCAACACAGATTTCCTCTAATTAGAT 58.729 33.333 15.47 0.37 31.13 1.98
1241 1319 5.649831 GGAGCAACACAGATTTCCTCTAATT 59.350 40.000 0.00 0.00 31.13 1.40
1245 1323 2.613977 CGGAGCAACACAGATTTCCTCT 60.614 50.000 0.00 0.00 33.14 3.69
1413 1493 3.016736 CGATGCCAGATTTACCAAGGTT 58.983 45.455 0.00 0.00 0.00 3.50
1425 1505 0.460109 CGTCACCAATCGATGCCAGA 60.460 55.000 0.00 0.00 0.00 3.86
1483 1567 1.220749 GGCGTGTAGATTGGGCTGA 59.779 57.895 0.00 0.00 0.00 4.26
1561 1645 6.726490 TGTGGATATTGAGTAAGAGGTACC 57.274 41.667 2.73 2.73 32.58 3.34
1595 1679 2.191400 TGCAGAGGCCAGAATTCTACT 58.809 47.619 7.86 6.91 40.13 2.57
1658 1746 9.803315 CAGTATGTGCTAGAGTAACTTTAATCA 57.197 33.333 0.00 0.00 30.67 2.57
1679 1767 4.159879 GTGAGGCACCTACTTGTACAGTAT 59.840 45.833 0.00 0.00 37.36 2.12
1700 1788 1.314730 AACTTTTACACTGCCCGGTG 58.685 50.000 0.00 5.72 42.34 4.94
1703 1791 1.467342 GGCTAACTTTTACACTGCCCG 59.533 52.381 0.00 0.00 33.45 6.13
1704 1792 2.228103 GTGGCTAACTTTTACACTGCCC 59.772 50.000 0.00 0.00 38.23 5.36
1705 1793 2.882137 TGTGGCTAACTTTTACACTGCC 59.118 45.455 0.00 0.00 39.33 4.85
1706 1794 4.561735 TTGTGGCTAACTTTTACACTGC 57.438 40.909 0.00 0.00 33.44 4.40
1707 1795 5.851177 CGATTTGTGGCTAACTTTTACACTG 59.149 40.000 0.00 0.00 33.44 3.66
1709 1797 5.992729 TCGATTTGTGGCTAACTTTTACAC 58.007 37.500 0.00 0.00 0.00 2.90
1723 1836 4.565166 TCGGTTATGTAGCTTCGATTTGTG 59.435 41.667 0.00 0.00 0.00 3.33
1724 1837 4.751060 TCGGTTATGTAGCTTCGATTTGT 58.249 39.130 0.00 0.00 0.00 2.83
1731 1844 7.040961 ACTCTTCTCTATCGGTTATGTAGCTTC 60.041 40.741 0.00 0.00 0.00 3.86
1797 1950 0.469705 AATGCTTGTTCTGCCCCACA 60.470 50.000 0.00 0.00 0.00 4.17
1812 1965 9.612620 GCCAATAACAAGTTGAGTATATAATGC 57.387 33.333 10.54 3.37 0.00 3.56
1829 1982 9.353431 ACATGATAATTCACATAGCCAATAACA 57.647 29.630 0.00 0.00 33.85 2.41
1850 2003 4.808414 ACAAGCAGCTCTAACTACATGA 57.192 40.909 0.00 0.00 0.00 3.07
1864 2017 7.148255 TGCATCAAATACTACCTAAACAAGCAG 60.148 37.037 0.00 0.00 0.00 4.24
1882 2035 6.296087 GGATAGTATCTCTCCCATGCATCAAA 60.296 42.308 9.97 0.00 0.00 2.69
1888 2041 7.124901 TCAAATAGGATAGTATCTCTCCCATGC 59.875 40.741 9.97 0.00 28.40 4.06
2007 2160 8.510243 AATATTGTTAGCATTGTCATCACAGA 57.490 30.769 0.00 0.00 32.71 3.41
2044 2197 8.542497 AGTACACGTTTGAATGATTAGCTTAA 57.458 30.769 0.00 0.00 0.00 1.85
2054 2207 7.391786 GTCTATGCTTAGTACACGTTTGAATG 58.608 38.462 6.53 0.00 0.00 2.67
2118 2643 9.474313 ACCACCAAAATAAATACTATCACATGT 57.526 29.630 0.00 0.00 0.00 3.21
2163 2742 7.228507 CGGGGAATCACATATGACAAATTTCTA 59.771 37.037 10.38 0.00 37.79 2.10
2172 2751 6.049149 CCATATACGGGGAATCACATATGAC 58.951 44.000 10.38 0.00 37.79 3.06
2185 2764 2.173996 ACCAAAGGAACCATATACGGGG 59.826 50.000 0.00 0.00 0.00 5.73
2197 2777 7.546250 TTTATAATCCTGCAAACCAAAGGAA 57.454 32.000 0.00 0.00 43.20 3.36
2259 2938 9.765795 TGTTTAATTTGATTTAATTGGACCGTT 57.234 25.926 0.00 0.00 0.00 4.44
2261 2940 9.197694 TGTGTTTAATTTGATTTAATTGGACCG 57.802 29.630 0.00 0.00 0.00 4.79
2313 2992 9.826574 AACGAAACTATAAATCTTAGTGGCATA 57.173 29.630 0.00 0.00 30.46 3.14
2334 3014 8.809159 TTTTCAAAATATGCATGAAGAACGAA 57.191 26.923 10.16 0.85 34.80 3.85
2336 3016 7.541783 TCCTTTTCAAAATATGCATGAAGAACG 59.458 33.333 10.16 1.37 34.80 3.95
2366 3049 7.775053 TGCAGGGATTTTAACATCTACTTTT 57.225 32.000 1.82 0.00 0.00 2.27
2374 3057 5.960202 AGGAGAAATGCAGGGATTTTAACAT 59.040 36.000 0.28 0.00 0.00 2.71
2376 3059 5.921962 AGGAGAAATGCAGGGATTTTAAC 57.078 39.130 0.28 0.00 0.00 2.01
2377 3060 6.933514 AAAGGAGAAATGCAGGGATTTTAA 57.066 33.333 0.28 0.00 0.00 1.52
2384 3067 5.728637 ACTTTAAAAGGAGAAATGCAGGG 57.271 39.130 0.00 0.00 0.00 4.45
2389 3072 9.284968 TCTGAACCTACTTTAAAAGGAGAAATG 57.715 33.333 12.06 0.00 42.39 2.32
2393 3076 8.202461 TCATCTGAACCTACTTTAAAAGGAGA 57.798 34.615 12.06 5.83 42.39 3.71
2394 3077 8.848474 TTCATCTGAACCTACTTTAAAAGGAG 57.152 34.615 12.06 2.25 39.30 3.69
2405 3088 8.110860 TGAGGAAATTTTTCATCTGAACCTAC 57.889 34.615 15.99 0.00 45.35 3.18
2407 3090 7.787623 ATGAGGAAATTTTTCATCTGAACCT 57.212 32.000 15.99 0.00 45.35 3.50
2422 3105 7.243604 TGTGGCAAATAAAGAATGAGGAAAT 57.756 32.000 0.00 0.00 0.00 2.17
2427 3110 6.044682 GGGAATGTGGCAAATAAAGAATGAG 58.955 40.000 0.00 0.00 0.00 2.90
2433 3116 6.593770 GGTTTAAGGGAATGTGGCAAATAAAG 59.406 38.462 0.00 0.00 0.00 1.85
2437 3120 3.906846 TGGTTTAAGGGAATGTGGCAAAT 59.093 39.130 0.00 0.00 0.00 2.32
2444 3127 3.582164 TGCCTTTGGTTTAAGGGAATGT 58.418 40.909 4.71 0.00 41.90 2.71
2451 3134 7.552687 TGATACTACTCATGCCTTTGGTTTAAG 59.447 37.037 0.00 0.00 0.00 1.85
2454 3137 5.815581 TGATACTACTCATGCCTTTGGTTT 58.184 37.500 0.00 0.00 0.00 3.27
2489 3172 7.552687 GGTTCAAAGGAAAAGTGAAGGATTTTT 59.447 33.333 0.00 0.00 34.13 1.94
2490 3173 7.047891 GGTTCAAAGGAAAAGTGAAGGATTTT 58.952 34.615 0.00 0.00 34.13 1.82
2491 3174 6.156083 TGGTTCAAAGGAAAAGTGAAGGATTT 59.844 34.615 0.00 0.00 34.13 2.17
2492 3175 5.660864 TGGTTCAAAGGAAAAGTGAAGGATT 59.339 36.000 0.00 0.00 34.13 3.01
2493 3176 5.208121 TGGTTCAAAGGAAAAGTGAAGGAT 58.792 37.500 0.00 0.00 34.13 3.24
2496 3183 6.892310 CTTTGGTTCAAAGGAAAAGTGAAG 57.108 37.500 11.36 0.00 44.75 3.02
2551 3238 8.947115 GCTGTACTTATTGGAGTAACATTTTCT 58.053 33.333 0.00 0.00 34.15 2.52
2558 3245 6.631962 AGACTGCTGTACTTATTGGAGTAAC 58.368 40.000 0.00 0.00 34.15 2.50
2565 3252 8.534333 TTAGTTCAAGACTGCTGTACTTATTG 57.466 34.615 0.00 0.00 39.48 1.90
2566 3253 7.819900 CCTTAGTTCAAGACTGCTGTACTTATT 59.180 37.037 0.00 0.00 39.48 1.40
2567 3254 7.038941 ACCTTAGTTCAAGACTGCTGTACTTAT 60.039 37.037 0.00 0.00 39.48 1.73
2568 3255 6.267014 ACCTTAGTTCAAGACTGCTGTACTTA 59.733 38.462 0.00 0.00 39.48 2.24
2569 3256 5.070580 ACCTTAGTTCAAGACTGCTGTACTT 59.929 40.000 0.00 0.00 39.48 2.24
2570 3257 4.589374 ACCTTAGTTCAAGACTGCTGTACT 59.411 41.667 0.00 0.00 39.48 2.73
2571 3258 4.884247 ACCTTAGTTCAAGACTGCTGTAC 58.116 43.478 0.00 0.00 39.48 2.90
2572 3259 5.069914 TCAACCTTAGTTCAAGACTGCTGTA 59.930 40.000 0.00 0.00 39.48 2.74
2573 3260 4.130118 CAACCTTAGTTCAAGACTGCTGT 58.870 43.478 0.00 0.00 39.48 4.40
2574 3261 4.380531 TCAACCTTAGTTCAAGACTGCTG 58.619 43.478 0.00 0.00 39.48 4.41
2575 3262 4.689612 TCAACCTTAGTTCAAGACTGCT 57.310 40.909 0.00 0.00 39.48 4.24
2576 3263 4.816925 AGTTCAACCTTAGTTCAAGACTGC 59.183 41.667 0.00 0.00 39.48 4.40
2577 3264 8.608844 ATTAGTTCAACCTTAGTTCAAGACTG 57.391 34.615 0.00 0.00 39.48 3.51
2578 3265 8.652290 AGATTAGTTCAACCTTAGTTCAAGACT 58.348 33.333 0.00 0.00 42.55 3.24
2579 3266 8.834749 AGATTAGTTCAACCTTAGTTCAAGAC 57.165 34.615 0.00 0.00 36.22 3.01
2612 3299 9.326413 CCCGATCTAAAGTAAGTGTCATAATTT 57.674 33.333 0.00 0.00 0.00 1.82
2613 3300 8.701895 TCCCGATCTAAAGTAAGTGTCATAATT 58.298 33.333 0.00 0.00 0.00 1.40
2614 3301 8.246430 TCCCGATCTAAAGTAAGTGTCATAAT 57.754 34.615 0.00 0.00 0.00 1.28
2615 3302 7.201884 CCTCCCGATCTAAAGTAAGTGTCATAA 60.202 40.741 0.00 0.00 0.00 1.90
2616 3303 6.264744 CCTCCCGATCTAAAGTAAGTGTCATA 59.735 42.308 0.00 0.00 0.00 2.15
2617 3304 5.069251 CCTCCCGATCTAAAGTAAGTGTCAT 59.931 44.000 0.00 0.00 0.00 3.06
2618 3305 4.401519 CCTCCCGATCTAAAGTAAGTGTCA 59.598 45.833 0.00 0.00 0.00 3.58
2619 3306 4.643784 TCCTCCCGATCTAAAGTAAGTGTC 59.356 45.833 0.00 0.00 0.00 3.67
2620 3307 4.607239 TCCTCCCGATCTAAAGTAAGTGT 58.393 43.478 0.00 0.00 0.00 3.55
2621 3308 5.793030 ATCCTCCCGATCTAAAGTAAGTG 57.207 43.478 0.00 0.00 0.00 3.16
2622 3309 8.493787 AATAATCCTCCCGATCTAAAGTAAGT 57.506 34.615 0.00 0.00 0.00 2.24
2623 3310 9.780186 AAAATAATCCTCCCGATCTAAAGTAAG 57.220 33.333 0.00 0.00 0.00 2.34
2625 3312 9.774413 GAAAAATAATCCTCCCGATCTAAAGTA 57.226 33.333 0.00 0.00 0.00 2.24
2626 3313 8.495260 AGAAAAATAATCCTCCCGATCTAAAGT 58.505 33.333 0.00 0.00 0.00 2.66
2627 3314 8.910351 AGAAAAATAATCCTCCCGATCTAAAG 57.090 34.615 0.00 0.00 0.00 1.85
2628 3315 9.695155 AAAGAAAAATAATCCTCCCGATCTAAA 57.305 29.630 0.00 0.00 0.00 1.85
2629 3316 9.695155 AAAAGAAAAATAATCCTCCCGATCTAA 57.305 29.630 0.00 0.00 0.00 2.10
2630 3317 9.338622 GAAAAGAAAAATAATCCTCCCGATCTA 57.661 33.333 0.00 0.00 0.00 1.98
2631 3318 8.055790 AGAAAAGAAAAATAATCCTCCCGATCT 58.944 33.333 0.00 0.00 0.00 2.75
2632 3319 8.226819 AGAAAAGAAAAATAATCCTCCCGATC 57.773 34.615 0.00 0.00 0.00 3.69
2633 3320 8.055790 AGAGAAAAGAAAAATAATCCTCCCGAT 58.944 33.333 0.00 0.00 0.00 4.18
2634 3321 7.402862 AGAGAAAAGAAAAATAATCCTCCCGA 58.597 34.615 0.00 0.00 0.00 5.14
2635 3322 7.631717 AGAGAAAAGAAAAATAATCCTCCCG 57.368 36.000 0.00 0.00 0.00 5.14
2636 3323 9.025041 TGAAGAGAAAAGAAAAATAATCCTCCC 57.975 33.333 0.00 0.00 0.00 4.30
2643 3330 8.813282 GGCGTTTTGAAGAGAAAAGAAAAATAA 58.187 29.630 0.00 0.00 0.00 1.40
2644 3331 8.194769 AGGCGTTTTGAAGAGAAAAGAAAAATA 58.805 29.630 0.00 0.00 0.00 1.40
2645 3332 7.041721 AGGCGTTTTGAAGAGAAAAGAAAAAT 58.958 30.769 0.00 0.00 0.00 1.82
2646 3333 6.394809 AGGCGTTTTGAAGAGAAAAGAAAAA 58.605 32.000 0.00 0.00 0.00 1.94
2647 3334 5.961272 AGGCGTTTTGAAGAGAAAAGAAAA 58.039 33.333 0.00 0.00 0.00 2.29
2648 3335 5.576447 AGGCGTTTTGAAGAGAAAAGAAA 57.424 34.783 0.00 0.00 0.00 2.52
2649 3336 4.260620 CGAGGCGTTTTGAAGAGAAAAGAA 60.261 41.667 0.00 0.00 0.00 2.52
2650 3337 3.247648 CGAGGCGTTTTGAAGAGAAAAGA 59.752 43.478 0.00 0.00 0.00 2.52
2651 3338 3.002348 ACGAGGCGTTTTGAAGAGAAAAG 59.998 43.478 0.00 0.00 36.35 2.27
2657 3344 1.067974 TCTCACGAGGCGTTTTGAAGA 59.932 47.619 0.00 0.00 38.32 2.87
2663 3350 0.391597 TTCCTTCTCACGAGGCGTTT 59.608 50.000 0.00 0.00 38.32 3.60
2665 3352 0.894184 TCTTCCTTCTCACGAGGCGT 60.894 55.000 0.00 0.00 42.36 5.68
2668 3355 4.399004 AATCATCTTCCTTCTCACGAGG 57.601 45.455 0.00 0.00 35.53 4.63
2669 3356 6.800543 TCTAAATCATCTTCCTTCTCACGAG 58.199 40.000 0.00 0.00 0.00 4.18
2670 3357 6.775594 TCTAAATCATCTTCCTTCTCACGA 57.224 37.500 0.00 0.00 0.00 4.35
2673 3360 8.138928 TCACTTCTAAATCATCTTCCTTCTCA 57.861 34.615 0.00 0.00 0.00 3.27
2679 3382 8.202745 ACGAAATCACTTCTAAATCATCTTCC 57.797 34.615 0.00 0.00 31.20 3.46
2707 3427 5.617087 GCTTACTGGTTTTGTCGGAGAATTC 60.617 44.000 0.00 0.00 39.69 2.17
2716 3436 4.327680 AGGATCAGCTTACTGGTTTTGTC 58.672 43.478 0.00 0.00 44.59 3.18
2738 3458 2.055838 GCATGCGAATATTACGGACGA 58.944 47.619 0.00 0.00 33.62 4.20
2916 3636 0.815734 TTCACAGGAGGTAGCTACGC 59.184 55.000 17.48 11.69 0.00 4.42
3076 3802 1.763256 GGCCCGTCCCACATACCTA 60.763 63.158 0.00 0.00 0.00 3.08
3077 3803 3.087906 GGCCCGTCCCACATACCT 61.088 66.667 0.00 0.00 0.00 3.08
3078 3804 3.087906 AGGCCCGTCCCACATACC 61.088 66.667 0.00 0.00 34.51 2.73
3079 3805 2.189521 CAGGCCCGTCCCACATAC 59.810 66.667 0.00 0.00 34.51 2.39
3080 3806 2.039787 TCAGGCCCGTCCCACATA 59.960 61.111 0.00 0.00 34.51 2.29
3081 3807 3.717294 GTCAGGCCCGTCCCACAT 61.717 66.667 0.00 0.00 34.51 3.21
3082 3808 4.954118 AGTCAGGCCCGTCCCACA 62.954 66.667 0.00 0.00 34.51 4.17
3083 3809 4.083862 GAGTCAGGCCCGTCCCAC 62.084 72.222 0.00 0.00 34.51 4.61
3086 3812 2.073037 GATACGAGTCAGGCCCGTCC 62.073 65.000 7.28 0.00 37.69 4.79
3087 3813 1.359475 GATACGAGTCAGGCCCGTC 59.641 63.158 7.28 0.00 37.69 4.79
3088 3814 1.379443 TGATACGAGTCAGGCCCGT 60.379 57.895 8.99 8.99 39.94 5.28
3089 3815 1.065928 GTGATACGAGTCAGGCCCG 59.934 63.158 0.00 0.00 0.00 6.13
3090 3816 0.103208 CTGTGATACGAGTCAGGCCC 59.897 60.000 0.00 0.00 0.00 5.80
3091 3817 1.066303 CTCTGTGATACGAGTCAGGCC 59.934 57.143 0.00 0.00 0.00 5.19
3092 3818 1.746220 ACTCTGTGATACGAGTCAGGC 59.254 52.381 0.00 0.00 35.72 4.85
3093 3819 2.478709 GCACTCTGTGATACGAGTCAGG 60.479 54.545 1.52 0.00 38.37 3.86
3094 3820 2.789436 CGCACTCTGTGATACGAGTCAG 60.789 54.545 1.52 0.00 38.37 3.51
3095 3821 1.130561 CGCACTCTGTGATACGAGTCA 59.869 52.381 1.52 0.00 38.37 3.41
3096 3822 1.532090 CCGCACTCTGTGATACGAGTC 60.532 57.143 1.52 0.00 38.37 3.36
3097 3823 0.452184 CCGCACTCTGTGATACGAGT 59.548 55.000 1.52 0.00 40.92 4.18
3098 3824 0.248661 CCCGCACTCTGTGATACGAG 60.249 60.000 1.52 0.00 35.23 4.18
3099 3825 1.807226 CCCGCACTCTGTGATACGA 59.193 57.895 1.52 0.00 35.23 3.43
3100 3826 1.878522 GCCCGCACTCTGTGATACG 60.879 63.158 1.52 0.00 35.23 3.06
3101 3827 0.391130 TTGCCCGCACTCTGTGATAC 60.391 55.000 1.52 0.00 35.23 2.24
3102 3828 0.108186 CTTGCCCGCACTCTGTGATA 60.108 55.000 1.52 0.00 35.23 2.15
3103 3829 1.376424 CTTGCCCGCACTCTGTGAT 60.376 57.895 1.52 0.00 35.23 3.06
3104 3830 2.031012 CTTGCCCGCACTCTGTGA 59.969 61.111 1.52 0.00 35.23 3.58
3105 3831 3.052082 CCTTGCCCGCACTCTGTG 61.052 66.667 0.00 0.00 36.51 3.66
3106 3832 1.764571 TAACCTTGCCCGCACTCTGT 61.765 55.000 0.00 0.00 0.00 3.41
3107 3833 0.605319 TTAACCTTGCCCGCACTCTG 60.605 55.000 0.00 0.00 0.00 3.35
3108 3834 0.321653 CTTAACCTTGCCCGCACTCT 60.322 55.000 0.00 0.00 0.00 3.24
3109 3835 1.305930 CCTTAACCTTGCCCGCACTC 61.306 60.000 0.00 0.00 0.00 3.51
3110 3836 1.303317 CCTTAACCTTGCCCGCACT 60.303 57.895 0.00 0.00 0.00 4.40
3111 3837 2.989881 GCCTTAACCTTGCCCGCAC 61.990 63.158 0.00 0.00 0.00 5.34
3112 3838 2.675075 GCCTTAACCTTGCCCGCA 60.675 61.111 0.00 0.00 0.00 5.69
3113 3839 3.449227 GGCCTTAACCTTGCCCGC 61.449 66.667 0.00 0.00 39.30 6.13
3114 3840 1.379843 ATGGCCTTAACCTTGCCCG 60.380 57.895 3.32 0.00 44.72 6.13
3115 3841 1.329913 CCATGGCCTTAACCTTGCCC 61.330 60.000 3.32 0.00 44.72 5.36
3116 3842 0.324275 TCCATGGCCTTAACCTTGCC 60.324 55.000 6.96 0.00 45.56 4.52
3117 3843 1.780503 ATCCATGGCCTTAACCTTGC 58.219 50.000 6.96 0.00 34.35 4.01
3118 3844 4.580580 GTCTTATCCATGGCCTTAACCTTG 59.419 45.833 6.96 0.00 35.22 3.61
3119 3845 4.686122 CGTCTTATCCATGGCCTTAACCTT 60.686 45.833 6.96 0.00 0.00 3.50
3120 3846 3.181454 CGTCTTATCCATGGCCTTAACCT 60.181 47.826 6.96 0.00 0.00 3.50
3121 3847 3.139077 CGTCTTATCCATGGCCTTAACC 58.861 50.000 6.96 0.00 0.00 2.85
3122 3848 2.548480 GCGTCTTATCCATGGCCTTAAC 59.452 50.000 6.96 1.60 0.00 2.01
3123 3849 2.171659 TGCGTCTTATCCATGGCCTTAA 59.828 45.455 6.96 4.29 0.00 1.85
3124 3850 1.765904 TGCGTCTTATCCATGGCCTTA 59.234 47.619 6.96 0.00 0.00 2.69
3125 3851 0.546122 TGCGTCTTATCCATGGCCTT 59.454 50.000 6.96 0.00 0.00 4.35
3126 3852 0.179045 GTGCGTCTTATCCATGGCCT 60.179 55.000 6.96 0.00 0.00 5.19
3127 3853 0.463654 TGTGCGTCTTATCCATGGCC 60.464 55.000 6.96 0.00 0.00 5.36
3128 3854 1.265095 CATGTGCGTCTTATCCATGGC 59.735 52.381 6.96 0.00 31.49 4.40
3129 3855 1.265095 GCATGTGCGTCTTATCCATGG 59.735 52.381 4.97 4.97 34.80 3.66
3130 3856 1.941975 TGCATGTGCGTCTTATCCATG 59.058 47.619 0.01 0.00 45.83 3.66
3131 3857 1.942657 GTGCATGTGCGTCTTATCCAT 59.057 47.619 0.00 0.00 45.83 3.41
3132 3858 1.066215 AGTGCATGTGCGTCTTATCCA 60.066 47.619 0.00 0.00 45.83 3.41
3133 3859 1.656652 AGTGCATGTGCGTCTTATCC 58.343 50.000 0.00 0.00 45.83 2.59
3134 3860 2.672874 TGAAGTGCATGTGCGTCTTATC 59.327 45.455 12.62 5.52 45.83 1.75
3135 3861 2.698803 TGAAGTGCATGTGCGTCTTAT 58.301 42.857 12.62 0.00 45.83 1.73
3136 3862 2.162319 TGAAGTGCATGTGCGTCTTA 57.838 45.000 12.62 3.35 45.83 2.10
3137 3863 1.308047 TTGAAGTGCATGTGCGTCTT 58.692 45.000 12.53 12.53 45.83 3.01
3138 3864 1.308047 TTTGAAGTGCATGTGCGTCT 58.692 45.000 0.00 0.00 45.83 4.18
3139 3865 2.336554 ATTTGAAGTGCATGTGCGTC 57.663 45.000 0.00 0.00 45.83 5.19
3140 3866 2.798976 AATTTGAAGTGCATGTGCGT 57.201 40.000 0.00 0.00 45.83 5.24
3141 3867 3.051327 TGAAATTTGAAGTGCATGTGCG 58.949 40.909 0.00 0.00 45.83 5.34
3142 3868 4.053295 ACTGAAATTTGAAGTGCATGTGC 58.947 39.130 0.00 0.00 42.50 4.57
3143 3869 6.592798 AAACTGAAATTTGAAGTGCATGTG 57.407 33.333 0.00 0.00 0.00 3.21
3144 3870 6.817641 TGAAAACTGAAATTTGAAGTGCATGT 59.182 30.769 0.00 0.00 0.00 3.21
3145 3871 7.121272 GTGAAAACTGAAATTTGAAGTGCATG 58.879 34.615 0.00 0.00 0.00 4.06
3146 3872 6.258507 GGTGAAAACTGAAATTTGAAGTGCAT 59.741 34.615 0.00 0.00 0.00 3.96
3147 3873 5.580297 GGTGAAAACTGAAATTTGAAGTGCA 59.420 36.000 0.00 0.00 0.00 4.57
3148 3874 5.580297 TGGTGAAAACTGAAATTTGAAGTGC 59.420 36.000 0.00 0.00 0.00 4.40
3149 3875 6.237542 CGTGGTGAAAACTGAAATTTGAAGTG 60.238 38.462 0.00 0.00 0.00 3.16
3150 3876 5.804979 CGTGGTGAAAACTGAAATTTGAAGT 59.195 36.000 0.00 0.00 0.00 3.01
3151 3877 6.033341 TCGTGGTGAAAACTGAAATTTGAAG 58.967 36.000 0.00 0.00 0.00 3.02
3152 3878 5.955488 TCGTGGTGAAAACTGAAATTTGAA 58.045 33.333 0.00 0.00 0.00 2.69
3153 3879 5.568685 TCGTGGTGAAAACTGAAATTTGA 57.431 34.783 0.00 0.00 0.00 2.69
3154 3880 6.344936 CGATTCGTGGTGAAAACTGAAATTTG 60.345 38.462 0.00 0.00 40.71 2.32
3155 3881 5.685511 CGATTCGTGGTGAAAACTGAAATTT 59.314 36.000 0.00 0.00 40.71 1.82
3156 3882 5.008217 TCGATTCGTGGTGAAAACTGAAATT 59.992 36.000 5.89 0.00 40.71 1.82
3157 3883 4.513692 TCGATTCGTGGTGAAAACTGAAAT 59.486 37.500 5.89 0.00 40.71 2.17
3158 3884 3.872182 TCGATTCGTGGTGAAAACTGAAA 59.128 39.130 5.89 0.00 40.71 2.69
3159 3885 3.459145 TCGATTCGTGGTGAAAACTGAA 58.541 40.909 5.89 0.00 40.71 3.02
3160 3886 3.100658 TCGATTCGTGGTGAAAACTGA 57.899 42.857 5.89 0.00 40.71 3.41
3161 3887 3.541711 GTTCGATTCGTGGTGAAAACTG 58.458 45.455 5.89 0.00 40.71 3.16
3162 3888 2.546789 GGTTCGATTCGTGGTGAAAACT 59.453 45.455 5.89 0.00 40.71 2.66
3163 3889 2.288458 TGGTTCGATTCGTGGTGAAAAC 59.712 45.455 5.89 1.34 40.71 2.43
3164 3890 2.562635 TGGTTCGATTCGTGGTGAAAA 58.437 42.857 5.89 0.00 40.71 2.29
3165 3891 2.242047 TGGTTCGATTCGTGGTGAAA 57.758 45.000 5.89 0.00 40.71 2.69
3166 3892 2.242047 TTGGTTCGATTCGTGGTGAA 57.758 45.000 5.89 0.00 41.81 3.18
3167 3893 2.465860 ATTGGTTCGATTCGTGGTGA 57.534 45.000 5.89 0.00 0.00 4.02
3168 3894 4.875544 ATTATTGGTTCGATTCGTGGTG 57.124 40.909 5.89 0.00 0.00 4.17
3169 3895 5.421277 TGTATTATTGGTTCGATTCGTGGT 58.579 37.500 5.89 0.00 0.00 4.16
3170 3896 5.977171 TGTATTATTGGTTCGATTCGTGG 57.023 39.130 5.89 0.00 0.00 4.94
3199 3925 9.878667 TCGATGGTATTAATTCTTAAGTCACAA 57.121 29.630 1.63 0.00 0.00 3.33
3200 3926 9.878667 TTCGATGGTATTAATTCTTAAGTCACA 57.121 29.630 1.63 0.00 0.00 3.58
3216 3942 9.634163 GTATTTGAAAAAGGTTTTCGATGGTAT 57.366 29.630 8.49 1.69 0.00 2.73
3217 3943 7.804129 CGTATTTGAAAAAGGTTTTCGATGGTA 59.196 33.333 8.49 0.50 0.00 3.25
3218 3944 6.639279 CGTATTTGAAAAAGGTTTTCGATGGT 59.361 34.615 8.49 1.21 0.00 3.55
3219 3945 6.858993 TCGTATTTGAAAAAGGTTTTCGATGG 59.141 34.615 8.49 4.02 0.00 3.51
3220 3946 7.845617 TCGTATTTGAAAAAGGTTTTCGATG 57.154 32.000 8.49 1.71 0.00 3.84
3221 3947 9.471084 AATTCGTATTTGAAAAAGGTTTTCGAT 57.529 25.926 8.49 7.70 0.00 3.59
3222 3948 8.859517 AATTCGTATTTGAAAAAGGTTTTCGA 57.140 26.923 8.49 4.55 0.00 3.71
3241 3967 9.275398 TGTGACAAAACTTATACCTAAATTCGT 57.725 29.630 0.00 0.00 0.00 3.85
3242 3968 9.537848 GTGTGACAAAACTTATACCTAAATTCG 57.462 33.333 0.00 0.00 0.00 3.34
3248 3974 9.439500 GGTTATGTGTGACAAAACTTATACCTA 57.561 33.333 0.00 0.00 0.00 3.08
3249 3975 7.392393 GGGTTATGTGTGACAAAACTTATACCT 59.608 37.037 0.00 0.00 0.00 3.08
3250 3976 7.175293 TGGGTTATGTGTGACAAAACTTATACC 59.825 37.037 0.00 0.00 0.00 2.73
3251 3977 8.101654 TGGGTTATGTGTGACAAAACTTATAC 57.898 34.615 0.00 0.00 0.00 1.47
3252 3978 8.871629 ATGGGTTATGTGTGACAAAACTTATA 57.128 30.769 0.00 0.00 0.00 0.98
3253 3979 7.775053 ATGGGTTATGTGTGACAAAACTTAT 57.225 32.000 0.00 0.00 0.00 1.73
3254 3980 8.871629 ATATGGGTTATGTGTGACAAAACTTA 57.128 30.769 0.00 0.00 0.00 2.24
3255 3981 7.775053 ATATGGGTTATGTGTGACAAAACTT 57.225 32.000 0.00 0.00 0.00 2.66
3256 3982 7.775053 AATATGGGTTATGTGTGACAAAACT 57.225 32.000 0.00 0.00 0.00 2.66
3257 3983 9.515020 CATAATATGGGTTATGTGTGACAAAAC 57.485 33.333 0.00 0.00 37.31 2.43
3295 4021 8.896744 GGATCAGAGTTTGAATGTTTGATCATA 58.103 33.333 12.06 0.00 40.54 2.15
3296 4022 7.395206 TGGATCAGAGTTTGAATGTTTGATCAT 59.605 33.333 12.06 0.00 40.54 2.45
3297 4023 6.716173 TGGATCAGAGTTTGAATGTTTGATCA 59.284 34.615 12.06 0.00 40.54 2.92
3298 4024 7.025963 GTGGATCAGAGTTTGAATGTTTGATC 58.974 38.462 0.00 3.61 39.77 2.92
3299 4025 6.071728 GGTGGATCAGAGTTTGAATGTTTGAT 60.072 38.462 0.00 0.00 39.77 2.57
3300 4026 5.241506 GGTGGATCAGAGTTTGAATGTTTGA 59.758 40.000 0.00 0.00 39.77 2.69
3301 4027 5.464168 GGTGGATCAGAGTTTGAATGTTTG 58.536 41.667 0.00 0.00 39.77 2.93
3302 4028 4.524328 GGGTGGATCAGAGTTTGAATGTTT 59.476 41.667 0.00 0.00 39.77 2.83
3303 4029 4.082125 GGGTGGATCAGAGTTTGAATGTT 58.918 43.478 0.00 0.00 39.77 2.71
3304 4030 3.562176 GGGGTGGATCAGAGTTTGAATGT 60.562 47.826 0.00 0.00 39.77 2.71
3305 4031 3.019564 GGGGTGGATCAGAGTTTGAATG 58.980 50.000 0.00 0.00 39.77 2.67
3306 4032 2.649312 TGGGGTGGATCAGAGTTTGAAT 59.351 45.455 0.00 0.00 39.77 2.57
3307 4033 2.061848 TGGGGTGGATCAGAGTTTGAA 58.938 47.619 0.00 0.00 39.77 2.69
3308 4034 1.741028 TGGGGTGGATCAGAGTTTGA 58.259 50.000 0.00 0.00 40.85 2.69
3309 4035 2.240667 AGATGGGGTGGATCAGAGTTTG 59.759 50.000 0.00 0.00 0.00 2.93
3310 4036 2.507471 GAGATGGGGTGGATCAGAGTTT 59.493 50.000 0.00 0.00 0.00 2.66
3311 4037 2.122768 GAGATGGGGTGGATCAGAGTT 58.877 52.381 0.00 0.00 0.00 3.01
3312 4038 1.694048 GGAGATGGGGTGGATCAGAGT 60.694 57.143 0.00 0.00 0.00 3.24
3313 4039 1.055040 GGAGATGGGGTGGATCAGAG 58.945 60.000 0.00 0.00 0.00 3.35
3314 4040 0.343018 TGGAGATGGGGTGGATCAGA 59.657 55.000 0.00 0.00 0.00 3.27
3315 4041 1.216064 TTGGAGATGGGGTGGATCAG 58.784 55.000 0.00 0.00 0.00 2.90
3316 4042 1.496001 CATTGGAGATGGGGTGGATCA 59.504 52.381 0.00 0.00 0.00 2.92
3317 4043 1.202976 CCATTGGAGATGGGGTGGATC 60.203 57.143 0.00 0.00 35.58 3.36
3318 4044 0.855598 CCATTGGAGATGGGGTGGAT 59.144 55.000 0.00 0.00 35.58 3.41
3319 4045 1.936767 GCCATTGGAGATGGGGTGGA 61.937 60.000 6.95 0.00 39.53 4.02
3320 4046 1.456331 GCCATTGGAGATGGGGTGG 60.456 63.158 6.95 0.00 39.53 4.61
3321 4047 1.456331 GGCCATTGGAGATGGGGTG 60.456 63.158 6.95 0.00 39.53 4.61
3322 4048 1.224003 AAGGCCATTGGAGATGGGGT 61.224 55.000 5.01 0.00 39.53 4.95
3323 4049 0.031817 AAAGGCCATTGGAGATGGGG 60.032 55.000 5.01 0.00 39.53 4.96
3324 4050 1.342275 TGAAAGGCCATTGGAGATGGG 60.342 52.381 5.01 0.00 39.53 4.00
3325 4051 1.753073 GTGAAAGGCCATTGGAGATGG 59.247 52.381 5.01 0.00 41.99 3.51
3326 4052 2.731572 AGTGAAAGGCCATTGGAGATG 58.268 47.619 5.01 0.00 0.00 2.90
3327 4053 3.525199 ACTAGTGAAAGGCCATTGGAGAT 59.475 43.478 5.01 0.00 0.00 2.75
3328 4054 2.912956 ACTAGTGAAAGGCCATTGGAGA 59.087 45.455 5.01 0.00 0.00 3.71
3329 4055 3.356529 ACTAGTGAAAGGCCATTGGAG 57.643 47.619 5.01 0.00 0.00 3.86
3330 4056 4.101114 TCTACTAGTGAAAGGCCATTGGA 58.899 43.478 5.01 0.00 0.00 3.53
3331 4057 4.487714 TCTACTAGTGAAAGGCCATTGG 57.512 45.455 5.01 0.00 0.00 3.16
3332 4058 6.817765 TTTTCTACTAGTGAAAGGCCATTG 57.182 37.500 5.01 0.00 35.27 2.82
3333 4059 6.208797 GGTTTTTCTACTAGTGAAAGGCCATT 59.791 38.462 5.01 0.00 35.27 3.16
3334 4060 5.710567 GGTTTTTCTACTAGTGAAAGGCCAT 59.289 40.000 5.01 0.00 35.27 4.40
3335 4061 5.067954 GGTTTTTCTACTAGTGAAAGGCCA 58.932 41.667 5.01 9.49 35.27 5.36
3336 4062 4.458295 GGGTTTTTCTACTAGTGAAAGGCC 59.542 45.833 5.39 15.75 35.27 5.19
3337 4063 5.314529 AGGGTTTTTCTACTAGTGAAAGGC 58.685 41.667 5.39 9.37 35.27 4.35
3338 4064 9.516546 AATAAGGGTTTTTCTACTAGTGAAAGG 57.483 33.333 5.39 0.00 35.27 3.11
3360 4086 3.389983 CCCTCATCAACCGGGACTAATAA 59.610 47.826 6.32 0.00 40.55 1.40
3376 4102 1.000896 CGGGACAAAAGGCCCTCAT 60.001 57.895 4.64 0.00 42.40 2.90
3557 4283 0.880278 ACTGAAATGCTGACGCGTGT 60.880 50.000 20.70 0.00 39.65 4.49
3674 4411 3.193691 ACGGACATAAGAGAGGACACTTG 59.806 47.826 0.00 0.00 0.00 3.16
3713 4450 4.668636 GAGGGCCTCTCTATGTACAGTAT 58.331 47.826 26.44 0.00 39.38 2.12
3774 4511 7.230712 TCTCGGTATGCATGAGAACTTCTATAA 59.769 37.037 10.16 0.00 35.91 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.