Multiple sequence alignment - TraesCS6B01G390500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G390500 chr6B 100.000 7119 0 0 1 7119 664828018 664820900 0.000000e+00 13147.0
1 TraesCS6B01G390500 chr6B 82.109 531 77 15 4803 5323 78573665 78574187 8.480000e-119 438.0
2 TraesCS6B01G390500 chr6B 79.694 458 86 5 5702 6154 78574505 78574960 2.480000e-84 324.0
3 TraesCS6B01G390500 chr6B 95.092 163 8 0 6212 6374 95349408 95349570 2.550000e-64 257.0
4 TraesCS6B01G390500 chr6B 93.103 87 6 0 3401 3487 22555598 22555684 2.080000e-25 128.0
5 TraesCS6B01G390500 chr6B 89.247 93 10 0 3398 3490 660670341 660670249 4.510000e-22 117.0
6 TraesCS6B01G390500 chr6B 83.784 74 11 1 1605 1677 687248642 687248715 1.280000e-07 69.4
7 TraesCS6B01G390500 chr1B 95.197 1978 69 10 1454 3405 590533291 590531314 0.000000e+00 3103.0
8 TraesCS6B01G390500 chr1B 96.048 835 27 2 3493 4323 590531314 590530482 0.000000e+00 1354.0
9 TraesCS6B01G390500 chr1B 95.588 136 5 1 4398 4532 590525601 590525466 4.320000e-52 217.0
10 TraesCS6B01G390500 chr3B 94.489 1996 79 14 1437 3405 143976120 143974129 0.000000e+00 3048.0
11 TraesCS6B01G390500 chr3B 96.860 1051 28 3 3480 4529 143974138 143973092 0.000000e+00 1753.0
12 TraesCS6B01G390500 chr3B 79.231 390 73 8 5763 6147 784431712 784431326 1.520000e-66 265.0
13 TraesCS6B01G390500 chr3B 91.713 181 12 2 6215 6395 172057488 172057311 1.530000e-61 248.0
14 TraesCS6B01G390500 chr3B 73.056 553 134 13 4800 5340 782663193 782663742 1.580000e-41 182.0
15 TraesCS6B01G390500 chr3B 81.193 218 38 2 2424 2638 788780853 788781070 9.490000e-39 172.0
16 TraesCS6B01G390500 chr3B 80.822 219 37 4 2424 2638 31415948 31416165 4.420000e-37 167.0
17 TraesCS6B01G390500 chr3B 85.135 74 10 1 1605 1677 7077781 7077854 2.750000e-09 75.0
18 TraesCS6B01G390500 chr6D 94.208 1692 81 10 4530 6216 439797300 439795621 0.000000e+00 2566.0
19 TraesCS6B01G390500 chr6D 95.907 733 24 4 6392 7119 439795593 439794862 0.000000e+00 1182.0
20 TraesCS6B01G390500 chr6D 88.734 861 52 13 1 835 439798773 439797932 0.000000e+00 1011.0
21 TraesCS6B01G390500 chr6D 92.667 600 38 4 838 1436 439797893 439797299 0.000000e+00 859.0
22 TraesCS6B01G390500 chr6D 72.381 315 64 20 1608 1915 406561378 406561080 2.130000e-10 78.7
23 TraesCS6B01G390500 chr7D 95.893 1047 32 6 1779 2815 411017592 411016547 0.000000e+00 1685.0
24 TraesCS6B01G390500 chr7D 93.124 669 18 6 2757 3405 615556400 615557060 0.000000e+00 955.0
25 TraesCS6B01G390500 chr7D 93.888 589 16 5 2837 3405 411016555 411015967 0.000000e+00 870.0
26 TraesCS6B01G390500 chr7D 95.045 444 21 1 1779 2222 615555955 615556397 0.000000e+00 697.0
27 TraesCS6B01G390500 chr7D 96.953 361 11 0 3485 3845 411015970 411015610 2.200000e-169 606.0
28 TraesCS6B01G390500 chr7D 95.192 312 15 0 1436 1747 615555644 615555955 1.780000e-135 494.0
29 TraesCS6B01G390500 chr7D 93.910 312 18 1 1437 1747 411017903 411017592 3.010000e-128 470.0
30 TraesCS6B01G390500 chr7D 96.400 250 9 0 3485 3734 615557057 615557306 5.140000e-111 412.0
31 TraesCS6B01G390500 chr7D 95.614 228 10 0 4302 4529 411015536 411015309 4.060000e-97 366.0
32 TraesCS6B01G390500 chr7D 93.043 230 8 1 4302 4531 615558092 615558313 5.320000e-86 329.0
33 TraesCS6B01G390500 chr7D 93.902 164 10 0 6211 6374 381413587 381413750 1.530000e-61 248.0
34 TraesCS6B01G390500 chr7D 92.899 169 12 0 6213 6381 618492441 618492609 5.520000e-61 246.0
35 TraesCS6B01G390500 chr7D 95.161 124 6 0 3722 3845 615557895 615558018 5.630000e-46 196.0
36 TraesCS6B01G390500 chr7D 94.366 71 4 0 4075 4145 411015606 411015536 7.550000e-20 110.0
37 TraesCS6B01G390500 chr7D 91.250 80 7 0 4066 4145 615558013 615558092 7.550000e-20 110.0
38 TraesCS6B01G390500 chr5A 93.504 1093 54 9 1794 2880 211770315 211769234 0.000000e+00 1609.0
39 TraesCS6B01G390500 chr5A 95.440 921 39 2 3608 4528 211764364 211763447 0.000000e+00 1465.0
40 TraesCS6B01G390500 chr5A 91.160 362 31 1 1437 1798 211778688 211778328 2.310000e-134 490.0
41 TraesCS6B01G390500 chr4D 88.544 1030 93 14 1754 2776 506272344 506273355 0.000000e+00 1225.0
42 TraesCS6B01G390500 chr4D 86.207 319 15 13 2775 3072 506273611 506273921 1.150000e-82 318.0
43 TraesCS6B01G390500 chr4D 93.750 96 6 0 3391 3486 31338340 31338435 2.070000e-30 145.0
44 TraesCS6B01G390500 chr4D 91.954 87 7 0 3401 3487 34978426 34978340 9.700000e-24 122.0
45 TraesCS6B01G390500 chr4D 91.011 89 8 0 3400 3488 492602150 492602238 3.490000e-23 121.0
46 TraesCS6B01G390500 chrUn 81.685 546 82 15 4803 5339 112384351 112383815 8.480000e-119 438.0
47 TraesCS6B01G390500 chrUn 80.131 458 84 5 5702 6154 112383511 112383056 1.140000e-87 335.0
48 TraesCS6B01G390500 chrUn 81.106 217 36 4 2426 2638 467217802 467217587 1.230000e-37 169.0
49 TraesCS6B01G390500 chrUn 85.714 77 11 0 1601 1677 29549869 29549945 1.650000e-11 82.4
50 TraesCS6B01G390500 chr7B 93.939 165 10 0 6216 6380 548113709 548113873 4.260000e-62 250.0
51 TraesCS6B01G390500 chr3A 77.149 442 93 8 5738 6173 732639348 732638909 4.260000e-62 250.0
52 TraesCS6B01G390500 chr5D 91.713 181 12 3 6216 6394 198477551 198477372 1.530000e-61 248.0
53 TraesCS6B01G390500 chr3D 93.902 164 10 0 6216 6379 232559969 232559806 1.530000e-61 248.0
54 TraesCS6B01G390500 chr3D 77.045 440 91 10 5738 6170 603428732 603429168 1.980000e-60 244.0
55 TraesCS6B01G390500 chr3D 73.694 517 122 13 4799 5305 585982000 585982512 9.430000e-44 189.0
56 TraesCS6B01G390500 chr2B 90.556 180 16 1 6207 6386 391518987 391519165 3.320000e-58 237.0
57 TraesCS6B01G390500 chr1A 87.685 203 22 3 6205 6406 463494951 463494751 4.290000e-57 233.0
58 TraesCS6B01G390500 chr1A 91.954 87 7 0 3400 3486 589498371 589498457 9.700000e-24 122.0
59 TraesCS6B01G390500 chr2A 92.222 90 7 0 3401 3490 550864916 550865005 2.080000e-25 128.0
60 TraesCS6B01G390500 chr2A 92.045 88 7 0 3402 3489 377798773 377798860 2.700000e-24 124.0
61 TraesCS6B01G390500 chr4A 91.860 86 7 0 3401 3486 709209107 709209192 3.490000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G390500 chr6B 664820900 664828018 7118 True 13147.000000 13147 100.000000 1 7119 1 chr6B.!!$R2 7118
1 TraesCS6B01G390500 chr6B 78573665 78574960 1295 False 381.000000 438 80.901500 4803 6154 2 chr6B.!!$F4 1351
2 TraesCS6B01G390500 chr1B 590530482 590533291 2809 True 2228.500000 3103 95.622500 1454 4323 2 chr1B.!!$R2 2869
3 TraesCS6B01G390500 chr3B 143973092 143976120 3028 True 2400.500000 3048 95.674500 1437 4529 2 chr3B.!!$R3 3092
4 TraesCS6B01G390500 chr6D 439794862 439798773 3911 True 1404.500000 2566 92.879000 1 7119 4 chr6D.!!$R2 7118
5 TraesCS6B01G390500 chr7D 411015309 411017903 2594 True 684.500000 1685 95.104000 1437 4529 6 chr7D.!!$R1 3092
6 TraesCS6B01G390500 chr7D 615555644 615558313 2669 False 456.142857 955 94.173571 1436 4531 7 chr7D.!!$F3 3095
7 TraesCS6B01G390500 chr5A 211769234 211770315 1081 True 1609.000000 1609 93.504000 1794 2880 1 chr5A.!!$R2 1086
8 TraesCS6B01G390500 chr5A 211763447 211764364 917 True 1465.000000 1465 95.440000 3608 4528 1 chr5A.!!$R1 920
9 TraesCS6B01G390500 chr4D 506272344 506273921 1577 False 771.500000 1225 87.375500 1754 3072 2 chr4D.!!$F3 1318
10 TraesCS6B01G390500 chrUn 112383056 112384351 1295 True 386.500000 438 80.908000 4803 6154 2 chrUn.!!$R2 1351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 377 0.031178 GGATTGCATGAATGGCGACC 59.969 55.000 0.00 0.0 0.00 4.79 F
813 840 0.108138 AGTTGGGCTCATACTGACGC 60.108 55.000 0.00 0.0 0.00 5.19 F
1594 1658 0.107831 GTTGTGCTGGGTGGTAGACA 59.892 55.000 0.00 0.0 0.00 3.41 F
1870 1934 0.179936 GCCTCTGGCTTAGCTGATGT 59.820 55.000 3.59 0.0 46.69 3.06 F
3143 3550 0.331278 TGCTTCCTTGGTGTATGGGG 59.669 55.000 0.00 0.0 0.00 4.96 F
3483 3890 0.397254 ATACTGTGGGACGGAGGGAG 60.397 60.000 0.00 0.0 0.00 4.30 F
3485 3892 1.000019 CTGTGGGACGGAGGGAGTA 60.000 63.158 0.00 0.0 0.00 2.59 F
3487 3894 1.000107 GTGGGACGGAGGGAGTACT 60.000 63.158 0.00 0.0 0.00 2.73 F
4832 5844 1.004277 TGGATTGTAGGTGGCAGGAAC 59.996 52.381 0.00 0.0 0.00 3.62 F
5788 6825 1.202639 TGGGTAGCATATGGTGAAGCG 60.203 52.381 17.58 0.0 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1551 0.032678 CCGATCCAGATGCGCTAACT 59.967 55.000 9.73 1.99 0.00 2.24 R
2462 2537 1.068434 CAATTTGGGCACGGTGTTCTT 59.932 47.619 10.24 0.00 0.00 2.52 R
3469 3876 0.257039 TAGTACTCCCTCCGTCCCAC 59.743 60.000 0.00 0.00 0.00 4.61 R
3758 4766 0.103208 GATGGAACCATCGAGAGCGT 59.897 55.000 16.46 0.00 42.55 5.07 R
4909 5921 0.107508 ATCCCCGTTGCACTGAGATG 60.108 55.000 0.00 0.00 0.00 2.90 R
5211 6233 1.110442 CCACCAAGACCAAAGTTGCA 58.890 50.000 0.00 0.00 0.00 4.08 R
5434 6456 2.093658 GGAAGCAACCTATGAACTCCGA 60.094 50.000 0.00 0.00 0.00 4.55 R
5436 6458 3.636153 AGGAAGCAACCTATGAACTCC 57.364 47.619 0.00 0.00 38.65 3.85 R
5929 6966 0.169672 CTGCTTTGCCATGTCCTTCG 59.830 55.000 0.00 0.00 0.00 3.79 R
6716 7770 0.252148 TGGATTTCATGGGCTTGGCA 60.252 50.000 0.00 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.363580 TCTGGAAAAGTTGAAAGCAAATCCT 59.636 36.000 0.00 0.00 35.42 3.24
61 62 5.655893 AGCGTTGATTGGTTTCAATTTTG 57.344 34.783 0.00 0.00 43.08 2.44
73 74 6.828502 GTTTCAATTTTGGAAACTCCTCAC 57.171 37.500 10.92 0.00 46.57 3.51
91 115 3.446570 GCAGCGGCTTTCCATGCT 61.447 61.111 0.00 0.00 40.01 3.79
109 133 1.537135 GCTTCTCATCCTACGGTCAGC 60.537 57.143 0.00 0.00 0.00 4.26
128 155 3.257873 CAGCCAGTACTCTGATATCCCTG 59.742 52.174 5.81 0.00 43.76 4.45
148 175 5.045432 CCCTGGCGGTCCCTAATAAATATTA 60.045 44.000 0.00 0.00 0.00 0.98
149 176 6.478129 CCTGGCGGTCCCTAATAAATATTAA 58.522 40.000 0.00 0.00 0.00 1.40
150 177 7.116736 CCTGGCGGTCCCTAATAAATATTAAT 58.883 38.462 0.00 0.00 0.00 1.40
151 178 7.614192 CCTGGCGGTCCCTAATAAATATTAATT 59.386 37.037 0.00 0.00 0.00 1.40
152 179 8.570068 TGGCGGTCCCTAATAAATATTAATTC 57.430 34.615 0.00 0.00 0.00 2.17
153 180 8.387813 TGGCGGTCCCTAATAAATATTAATTCT 58.612 33.333 0.00 0.00 0.00 2.40
154 181 8.890718 GGCGGTCCCTAATAAATATTAATTCTC 58.109 37.037 0.00 0.00 0.00 2.87
155 182 8.890718 GCGGTCCCTAATAAATATTAATTCTCC 58.109 37.037 0.00 0.00 0.00 3.71
156 183 9.953565 CGGTCCCTAATAAATATTAATTCTCCA 57.046 33.333 0.00 0.00 0.00 3.86
190 217 7.854337 TGCCATAGATATGATTCATGCTTCTA 58.146 34.615 9.46 12.05 35.75 2.10
215 242 3.365832 CATCGCATGTATTTCAAGGTGC 58.634 45.455 0.00 0.00 0.00 5.01
217 244 3.867857 TCGCATGTATTTCAAGGTGCTA 58.132 40.909 0.00 0.00 30.20 3.49
224 251 6.892658 TGTATTTCAAGGTGCTAATGTGTT 57.107 33.333 0.00 0.00 0.00 3.32
347 374 2.519377 ATTGGATTGCATGAATGGCG 57.481 45.000 0.00 0.00 0.00 5.69
350 377 0.031178 GGATTGCATGAATGGCGACC 59.969 55.000 0.00 0.00 0.00 4.79
387 414 9.862149 TGATAGGCTCGAAATCCTATATATACA 57.138 33.333 16.14 9.69 43.65 2.29
445 472 9.308000 ACAATTCAAGTTACCATAATGAAAGGA 57.692 29.630 0.00 0.00 34.09 3.36
454 481 3.385433 CCATAATGAAAGGATGGCAAGCA 59.615 43.478 0.00 0.00 34.10 3.91
475 502 4.264253 CATTTGCAGTGACCCTTCTCATA 58.736 43.478 0.00 0.00 0.00 2.15
495 522 8.526978 TCTCATATCATATCTTGTTCTAGCCAC 58.473 37.037 0.00 0.00 0.00 5.01
516 543 5.130145 CCACCAGAGGAGAAGATGTAAGAAT 59.870 44.000 0.00 0.00 0.00 2.40
557 584 8.258007 AGAATATTGACCAGATTCGACAAGTTA 58.742 33.333 0.00 0.00 35.23 2.24
664 691 7.425577 TGTGTGTCTAACAAGAAGATGAATG 57.574 36.000 0.00 0.00 41.57 2.67
665 692 7.216494 TGTGTGTCTAACAAGAAGATGAATGA 58.784 34.615 0.00 0.00 41.57 2.57
695 722 4.155709 TGGATGGAGGAGATGTCTATGAC 58.844 47.826 0.00 0.00 0.00 3.06
700 727 3.577848 GGAGGAGATGTCTATGACTGCAT 59.422 47.826 0.00 0.00 38.54 3.96
735 762 0.400594 ACCAGCTCTTAACCACCCAC 59.599 55.000 0.00 0.00 0.00 4.61
742 769 4.080863 AGCTCTTAACCACCCACTATTGAG 60.081 45.833 0.00 0.00 0.00 3.02
804 831 7.062749 AGATTTATAATCGTAGTTGGGCTCA 57.937 36.000 0.00 0.00 0.00 4.26
811 838 2.426024 TCGTAGTTGGGCTCATACTGAC 59.574 50.000 10.53 0.00 0.00 3.51
812 839 2.794981 CGTAGTTGGGCTCATACTGACG 60.795 54.545 10.53 11.34 0.00 4.35
813 840 0.108138 AGTTGGGCTCATACTGACGC 60.108 55.000 0.00 0.00 0.00 5.19
829 856 0.887933 ACGCAGCTTTATGTTTGGGG 59.112 50.000 0.00 0.00 0.00 4.96
835 862 4.342092 GCAGCTTTATGTTTGGGGACATAT 59.658 41.667 0.00 0.00 40.94 1.78
836 863 5.163416 GCAGCTTTATGTTTGGGGACATATT 60.163 40.000 0.00 0.00 40.94 1.28
837 864 6.040391 GCAGCTTTATGTTTGGGGACATATTA 59.960 38.462 0.00 0.00 40.94 0.98
838 865 7.417342 GCAGCTTTATGTTTGGGGACATATTAA 60.417 37.037 0.00 0.00 40.94 1.40
839 866 8.137437 CAGCTTTATGTTTGGGGACATATTAAG 58.863 37.037 0.00 2.99 40.94 1.85
840 867 7.839200 AGCTTTATGTTTGGGGACATATTAAGT 59.161 33.333 9.44 0.00 40.94 2.24
854 916 9.950680 GGACATATTAAGTGTAACAAATGATGG 57.049 33.333 0.00 0.00 41.43 3.51
962 1025 7.041098 GCGAGAATCATAATTGTACCAATTCCT 60.041 37.037 5.53 0.00 33.17 3.36
1028 1091 3.412386 CAAGTTCCTTTCCGAATGGACT 58.588 45.455 13.91 11.66 46.45 3.85
1067 1130 6.095440 CCATTCCTAAATGTTGAATCCGAAGT 59.905 38.462 0.00 0.00 40.63 3.01
1078 1141 0.752658 ATCCGAAGTGCATCCATCGA 59.247 50.000 12.85 0.00 37.48 3.59
1135 1198 8.034313 ACTTCATAACAATAGAAGGGAGCATA 57.966 34.615 0.00 0.00 42.24 3.14
1158 1221 3.623703 AGCAGGACACAATATTGATGCA 58.376 40.909 22.16 0.00 34.93 3.96
1159 1222 4.212716 AGCAGGACACAATATTGATGCAT 58.787 39.130 22.16 0.00 34.93 3.96
1181 1244 6.256757 GCATTGTTTACCAAGTTTAAGCAACA 59.743 34.615 0.41 0.00 37.93 3.33
1190 1253 3.222603 AGTTTAAGCAACAAGGGGTGAG 58.777 45.455 0.00 0.00 37.93 3.51
1191 1254 1.616159 TTAAGCAACAAGGGGTGAGC 58.384 50.000 0.00 0.00 33.76 4.26
1195 1258 0.315251 GCAACAAGGGGTGAGCTTTC 59.685 55.000 0.00 0.00 0.00 2.62
1355 1418 5.188359 ACCCTTAAATGATGCTTTGCAAGAT 59.812 36.000 0.00 0.00 43.62 2.40
1356 1419 6.380846 ACCCTTAAATGATGCTTTGCAAGATA 59.619 34.615 0.00 0.00 43.62 1.98
1391 1454 7.323656 GGATGAGAGTCACAAAAACAATAAACG 59.676 37.037 0.00 0.00 0.00 3.60
1406 1469 4.900635 ATAAACGGAGCAATCCATTCAC 57.099 40.909 0.00 0.00 0.00 3.18
1412 1475 4.202398 ACGGAGCAATCCATTCACTATCAT 60.202 41.667 0.00 0.00 0.00 2.45
1414 1477 5.579904 CGGAGCAATCCATTCACTATCATAG 59.420 44.000 0.00 0.00 0.00 2.23
1416 1479 6.817641 GGAGCAATCCATTCACTATCATAGAG 59.182 42.308 0.00 0.00 0.00 2.43
1497 1560 1.211969 GAGGTCGTCAGTTAGCGCA 59.788 57.895 11.47 0.00 0.00 6.09
1594 1658 0.107831 GTTGTGCTGGGTGGTAGACA 59.892 55.000 0.00 0.00 0.00 3.41
1704 1768 0.392706 TGCAGGAGCGAGAGTTTTCA 59.607 50.000 0.00 0.00 46.23 2.69
1870 1934 0.179936 GCCTCTGGCTTAGCTGATGT 59.820 55.000 3.59 0.00 46.69 3.06
2052 2118 1.896220 AAGCACAAATCTTCTCGGCA 58.104 45.000 0.00 0.00 0.00 5.69
2090 2159 0.467290 AAAAGGGAGAGTTTGCCGCA 60.467 50.000 0.00 0.00 43.23 5.69
2168 2237 3.142174 GGTTAGTGAAGAACAAGCTGCT 58.858 45.455 0.00 0.00 0.00 4.24
2298 2367 0.667993 GTGCTTGTGTTTGCAGGCTA 59.332 50.000 0.00 0.00 41.29 3.93
2481 2556 1.339929 GAAGAACACCGTGCCCAAATT 59.660 47.619 0.00 0.00 0.00 1.82
2577 2652 4.020485 TGGTCCTACTTTCAACTCTTAGGC 60.020 45.833 0.00 0.00 31.01 3.93
2761 2836 4.360951 TTTCAGTTTGGTTCGGGACTAT 57.639 40.909 0.00 0.00 0.00 2.12
2856 3243 4.732923 CGAGTTTGAAACTTTGAATGCGAA 59.267 37.500 12.37 0.00 43.03 4.70
2910 3297 2.269940 AGCCATGTCCTGAAGGTAGTT 58.730 47.619 0.00 0.00 36.34 2.24
3133 3540 3.635331 CATTTCACTGTGTGCTTCCTTG 58.365 45.455 7.79 0.00 32.98 3.61
3143 3550 0.331278 TGCTTCCTTGGTGTATGGGG 59.669 55.000 0.00 0.00 0.00 4.96
3188 3595 3.370978 GTGTGTCCGTCATCATTTTCGAT 59.629 43.478 0.00 0.00 0.00 3.59
3327 3734 6.016111 GCTAGTACTGTTTCTGAATTTTCGC 58.984 40.000 5.39 0.00 0.00 4.70
3407 3814 7.898014 ATTTGAATTCTTGGGTAATACTCCC 57.102 36.000 7.05 0.00 44.81 4.30
3408 3815 6.652205 TTGAATTCTTGGGTAATACTCCCT 57.348 37.500 7.05 0.00 44.84 4.20
3409 3816 6.248569 TGAATTCTTGGGTAATACTCCCTC 57.751 41.667 7.05 0.00 44.84 4.30
3410 3817 5.970640 TGAATTCTTGGGTAATACTCCCTCT 59.029 40.000 7.05 0.00 44.84 3.69
3411 3818 5.896073 ATTCTTGGGTAATACTCCCTCTG 57.104 43.478 2.65 0.00 44.84 3.35
3412 3819 4.348020 TCTTGGGTAATACTCCCTCTGT 57.652 45.455 2.65 0.00 44.84 3.41
3413 3820 4.287552 TCTTGGGTAATACTCCCTCTGTC 58.712 47.826 2.65 0.00 44.84 3.51
3414 3821 3.042059 TGGGTAATACTCCCTCTGTCC 57.958 52.381 2.65 0.00 44.84 4.02
3415 3822 2.327373 GGGTAATACTCCCTCTGTCCC 58.673 57.143 0.00 0.00 41.58 4.46
3416 3823 2.359994 GGGTAATACTCCCTCTGTCCCA 60.360 54.545 0.00 0.00 41.58 4.37
3417 3824 3.588569 GGTAATACTCCCTCTGTCCCAT 58.411 50.000 0.00 0.00 0.00 4.00
3418 3825 4.450265 GGGTAATACTCCCTCTGTCCCATA 60.450 50.000 0.00 0.00 41.58 2.74
3419 3826 5.152934 GGTAATACTCCCTCTGTCCCATAA 58.847 45.833 0.00 0.00 0.00 1.90
3420 3827 5.785940 GGTAATACTCCCTCTGTCCCATAAT 59.214 44.000 0.00 0.00 0.00 1.28
3421 3828 6.958192 GGTAATACTCCCTCTGTCCCATAATA 59.042 42.308 0.00 0.00 0.00 0.98
3422 3829 7.624077 GGTAATACTCCCTCTGTCCCATAATAT 59.376 40.741 0.00 0.00 0.00 1.28
3423 3830 9.710818 GTAATACTCCCTCTGTCCCATAATATA 57.289 37.037 0.00 0.00 0.00 0.86
3425 3832 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
3426 3833 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3427 3834 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3428 3835 7.964293 ACTCCCTCTGTCCCATAATATAAGAAT 59.036 37.037 0.00 0.00 0.00 2.40
3429 3836 8.150827 TCCCTCTGTCCCATAATATAAGAATG 57.849 38.462 0.00 0.00 0.00 2.67
3430 3837 7.739444 TCCCTCTGTCCCATAATATAAGAATGT 59.261 37.037 0.00 0.00 0.00 2.71
3431 3838 8.386264 CCCTCTGTCCCATAATATAAGAATGTT 58.614 37.037 0.00 0.00 0.00 2.71
3432 3839 9.799106 CCTCTGTCCCATAATATAAGAATGTTT 57.201 33.333 0.00 0.00 0.00 2.83
3467 3874 9.821662 AACATAGCTTGAAAAACGTTCTTATAC 57.178 29.630 0.00 0.00 0.00 1.47
3468 3875 9.216117 ACATAGCTTGAAAAACGTTCTTATACT 57.784 29.630 0.00 0.00 0.00 2.12
3469 3876 9.478019 CATAGCTTGAAAAACGTTCTTATACTG 57.522 33.333 0.00 0.00 0.00 2.74
3470 3877 7.492352 AGCTTGAAAAACGTTCTTATACTGT 57.508 32.000 0.00 0.00 0.00 3.55
3471 3878 7.352739 AGCTTGAAAAACGTTCTTATACTGTG 58.647 34.615 0.00 0.00 0.00 3.66
3472 3879 6.577427 GCTTGAAAAACGTTCTTATACTGTGG 59.423 38.462 0.00 0.00 0.00 4.17
3473 3880 6.548441 TGAAAAACGTTCTTATACTGTGGG 57.452 37.500 0.00 0.00 0.00 4.61
3474 3881 6.289834 TGAAAAACGTTCTTATACTGTGGGA 58.710 36.000 0.00 0.00 0.00 4.37
3475 3882 6.203338 TGAAAAACGTTCTTATACTGTGGGAC 59.797 38.462 0.00 0.00 0.00 4.46
3476 3883 3.498927 ACGTTCTTATACTGTGGGACG 57.501 47.619 0.00 0.00 0.00 4.79
3477 3884 2.165030 ACGTTCTTATACTGTGGGACGG 59.835 50.000 0.00 0.00 0.00 4.79
3478 3885 2.424601 CGTTCTTATACTGTGGGACGGA 59.575 50.000 0.00 0.00 0.00 4.69
3479 3886 3.488721 CGTTCTTATACTGTGGGACGGAG 60.489 52.174 0.00 0.00 0.00 4.63
3480 3887 2.662866 TCTTATACTGTGGGACGGAGG 58.337 52.381 0.00 0.00 0.00 4.30
3481 3888 1.687123 CTTATACTGTGGGACGGAGGG 59.313 57.143 0.00 0.00 0.00 4.30
3482 3889 0.928505 TATACTGTGGGACGGAGGGA 59.071 55.000 0.00 0.00 0.00 4.20
3483 3890 0.397254 ATACTGTGGGACGGAGGGAG 60.397 60.000 0.00 0.00 0.00 4.30
3484 3891 1.797018 TACTGTGGGACGGAGGGAGT 61.797 60.000 0.00 0.00 0.00 3.85
3485 3892 1.000019 CTGTGGGACGGAGGGAGTA 60.000 63.158 0.00 0.00 0.00 2.59
3486 3893 1.304713 TGTGGGACGGAGGGAGTAC 60.305 63.158 0.00 0.00 0.00 2.73
3487 3894 1.000107 GTGGGACGGAGGGAGTACT 60.000 63.158 0.00 0.00 0.00 2.73
3714 4121 9.965824 GTGCATAATATTTAATGGCAGTAACTT 57.034 29.630 6.93 4.57 0.00 2.66
3770 4778 2.887568 GTGGCACGCTCTCGATGG 60.888 66.667 0.00 0.00 39.41 3.51
3926 4934 4.903649 TCAAAGCTATCTGGATCTGGATCA 59.096 41.667 11.93 0.00 39.54 2.92
4106 5114 3.567585 TGTAGGATCAGAGCTTGAGATCG 59.432 47.826 14.09 0.00 39.68 3.69
4135 5143 2.036958 TCCGGTGTTTATGCTCCATG 57.963 50.000 0.00 0.00 0.00 3.66
4340 5352 2.675317 GCTGCGTTAGTCCAGAATCTGT 60.675 50.000 9.63 0.00 0.00 3.41
4619 5631 9.204570 GCTAAATAATAACCTGTGTATCGACAT 57.795 33.333 0.00 0.00 38.04 3.06
4635 5647 5.661056 TCGACATTCTTTCCAGTCTATGT 57.339 39.130 0.00 0.00 0.00 2.29
4666 5678 8.432110 AATTTCATTTGTTTTACCAAGTGTCC 57.568 30.769 0.00 0.00 34.66 4.02
4692 5704 4.846168 AACCTCTTGAAGGGTTCTATCC 57.154 45.455 10.91 0.00 45.72 2.59
4724 5736 7.916552 TCTTTTTGTACTGACAGCTTTAAGAC 58.083 34.615 1.25 0.00 36.76 3.01
4729 5741 4.672587 ACTGACAGCTTTAAGACAGTCA 57.327 40.909 1.25 11.74 34.21 3.41
4784 5796 7.568199 AGTGGTTAATATTTAGCCATCACAC 57.432 36.000 6.19 0.00 0.00 3.82
4786 5798 8.491134 AGTGGTTAATATTTAGCCATCACACTA 58.509 33.333 6.19 0.00 31.92 2.74
4787 5799 8.774586 GTGGTTAATATTTAGCCATCACACTAG 58.225 37.037 6.19 0.00 0.00 2.57
4792 5804 8.839310 AATATTTAGCCATCACACTAGATGTC 57.161 34.615 0.00 0.00 43.00 3.06
4793 5805 5.675684 TTTAGCCATCACACTAGATGTCA 57.324 39.130 0.00 0.00 43.00 3.58
4794 5806 5.876651 TTAGCCATCACACTAGATGTCAT 57.123 39.130 0.00 0.00 43.00 3.06
4795 5807 4.767578 AGCCATCACACTAGATGTCATT 57.232 40.909 0.00 0.00 43.00 2.57
4796 5808 5.876651 AGCCATCACACTAGATGTCATTA 57.123 39.130 0.00 0.00 43.00 1.90
4797 5809 6.239217 AGCCATCACACTAGATGTCATTAA 57.761 37.500 0.00 0.00 43.00 1.40
4798 5810 6.286758 AGCCATCACACTAGATGTCATTAAG 58.713 40.000 0.00 0.00 43.00 1.85
4799 5811 6.098838 AGCCATCACACTAGATGTCATTAAGA 59.901 38.462 0.00 0.00 43.00 2.10
4832 5844 1.004277 TGGATTGTAGGTGGCAGGAAC 59.996 52.381 0.00 0.00 0.00 3.62
4837 5849 3.019799 TGTAGGTGGCAGGAACAAAAA 57.980 42.857 0.00 0.00 0.00 1.94
4909 5921 6.403746 GCCAAAGGTGAAGAAAGATAGTAAGC 60.404 42.308 0.00 0.00 0.00 3.09
4959 5974 2.323999 ATGGGCCAAATGGACTTGAA 57.676 45.000 11.89 0.00 44.77 2.69
4983 5998 7.562454 AGGTATAATTGTTGGTTATTCGGTG 57.438 36.000 0.00 0.00 0.00 4.94
5022 6037 1.588861 GATAGCTTCGCGAGGTTTCAC 59.411 52.381 19.98 2.32 37.30 3.18
5078 6093 9.095065 GGAAACACGTTCTATTATCAACTACAT 57.905 33.333 0.00 0.00 36.40 2.29
5211 6233 2.616842 CCTGGTTTCGTGCAAGTTAACT 59.383 45.455 1.12 1.12 0.00 2.24
5237 6259 3.891366 ACTTTGGTCTTGGTGGAAGATTG 59.109 43.478 0.00 0.00 42.82 2.67
5442 6464 9.152595 AGTTGAGTTATTTTCTAATCGGAGTTC 57.847 33.333 0.00 0.00 0.00 3.01
5469 6491 4.100808 GGTTGCTTCCTATCATCTCACTCT 59.899 45.833 0.00 0.00 0.00 3.24
5543 6567 4.981812 ACTGAACTTCCCGGTTAGAATTT 58.018 39.130 0.00 0.00 0.00 1.82
5544 6568 6.117975 ACTGAACTTCCCGGTTAGAATTTA 57.882 37.500 0.00 0.00 0.00 1.40
5752 6789 8.664798 TCATGTTCTGAATTTTATTAGGACACG 58.335 33.333 0.00 0.00 31.88 4.49
5788 6825 1.202639 TGGGTAGCATATGGTGAAGCG 60.203 52.381 17.58 0.00 0.00 4.68
5971 7008 7.682741 GCAGCTTTCATAAAGAGCATCCAAATA 60.683 37.037 3.63 0.00 41.02 1.40
6164 7204 6.985188 AGTTGTTACTATACCGTCGAGTTA 57.015 37.500 0.00 0.00 31.21 2.24
6219 7259 3.819564 TGGCACACTATGGATGTACTC 57.180 47.619 0.00 0.00 0.00 2.59
6220 7260 2.434336 TGGCACACTATGGATGTACTCC 59.566 50.000 0.00 0.00 45.19 3.85
6221 7261 2.224305 GGCACACTATGGATGTACTCCC 60.224 54.545 8.36 3.66 44.23 4.30
6222 7262 2.700897 GCACACTATGGATGTACTCCCT 59.299 50.000 8.36 2.85 44.23 4.20
6223 7263 3.243907 GCACACTATGGATGTACTCCCTC 60.244 52.174 8.36 0.00 44.23 4.30
6224 7264 4.219115 CACACTATGGATGTACTCCCTCT 58.781 47.826 8.36 0.00 44.23 3.69
6225 7265 4.038522 CACACTATGGATGTACTCCCTCTG 59.961 50.000 8.36 3.11 44.23 3.35
6226 7266 4.219115 CACTATGGATGTACTCCCTCTGT 58.781 47.826 8.36 1.82 44.23 3.41
6227 7267 4.651503 CACTATGGATGTACTCCCTCTGTT 59.348 45.833 8.36 0.00 44.23 3.16
6228 7268 4.896482 ACTATGGATGTACTCCCTCTGTTC 59.104 45.833 8.36 0.00 44.23 3.18
6229 7269 2.467880 TGGATGTACTCCCTCTGTTCC 58.532 52.381 8.36 0.00 44.23 3.62
6230 7270 1.763545 GGATGTACTCCCTCTGTTCCC 59.236 57.143 0.00 0.00 38.19 3.97
6231 7271 2.467880 GATGTACTCCCTCTGTTCCCA 58.532 52.381 0.00 0.00 0.00 4.37
6232 7272 2.409064 TGTACTCCCTCTGTTCCCAA 57.591 50.000 0.00 0.00 0.00 4.12
6233 7273 2.696775 TGTACTCCCTCTGTTCCCAAA 58.303 47.619 0.00 0.00 0.00 3.28
6234 7274 3.256704 TGTACTCCCTCTGTTCCCAAAT 58.743 45.455 0.00 0.00 0.00 2.32
6235 7275 4.431378 TGTACTCCCTCTGTTCCCAAATA 58.569 43.478 0.00 0.00 0.00 1.40
6236 7276 5.036916 TGTACTCCCTCTGTTCCCAAATAT 58.963 41.667 0.00 0.00 0.00 1.28
6237 7277 5.491078 TGTACTCCCTCTGTTCCCAAATATT 59.509 40.000 0.00 0.00 0.00 1.28
6238 7278 5.536497 ACTCCCTCTGTTCCCAAATATTT 57.464 39.130 0.00 0.00 0.00 1.40
6239 7279 5.264395 ACTCCCTCTGTTCCCAAATATTTG 58.736 41.667 19.40 19.40 37.90 2.32
6240 7280 5.222337 ACTCCCTCTGTTCCCAAATATTTGT 60.222 40.000 23.24 0.77 36.45 2.83
6241 7281 5.261216 TCCCTCTGTTCCCAAATATTTGTC 58.739 41.667 23.24 12.77 36.45 3.18
6242 7282 5.015178 TCCCTCTGTTCCCAAATATTTGTCT 59.985 40.000 23.24 0.00 36.45 3.41
6243 7283 5.716703 CCCTCTGTTCCCAAATATTTGTCTT 59.283 40.000 23.24 0.00 36.45 3.01
6244 7284 6.211384 CCCTCTGTTCCCAAATATTTGTCTTT 59.789 38.462 23.24 0.00 36.45 2.52
6245 7285 7.092716 CCTCTGTTCCCAAATATTTGTCTTTG 58.907 38.462 23.24 10.08 36.45 2.77
6246 7286 7.255942 CCTCTGTTCCCAAATATTTGTCTTTGT 60.256 37.037 23.24 0.00 36.45 2.83
6247 7287 8.698973 TCTGTTCCCAAATATTTGTCTTTGTA 57.301 30.769 23.24 5.03 36.45 2.41
6248 7288 8.792633 TCTGTTCCCAAATATTTGTCTTTGTAG 58.207 33.333 23.24 13.55 36.45 2.74
6249 7289 8.698973 TGTTCCCAAATATTTGTCTTTGTAGA 57.301 30.769 23.24 7.17 36.45 2.59
6250 7290 8.792633 TGTTCCCAAATATTTGTCTTTGTAGAG 58.207 33.333 23.24 7.00 36.45 2.43
6251 7291 9.010029 GTTCCCAAATATTTGTCTTTGTAGAGA 57.990 33.333 23.24 5.94 36.45 3.10
6252 7292 9.753674 TTCCCAAATATTTGTCTTTGTAGAGAT 57.246 29.630 23.24 0.00 36.45 2.75
6253 7293 9.753674 TCCCAAATATTTGTCTTTGTAGAGATT 57.246 29.630 23.24 0.00 36.45 2.40
6261 7301 9.956720 ATTTGTCTTTGTAGAGATTTCAACAAG 57.043 29.630 0.00 0.00 33.70 3.16
6262 7302 8.506168 TTGTCTTTGTAGAGATTTCAACAAGT 57.494 30.769 0.00 0.00 33.70 3.16
6263 7303 7.919690 TGTCTTTGTAGAGATTTCAACAAGTG 58.080 34.615 0.00 0.00 33.70 3.16
6264 7304 7.768582 TGTCTTTGTAGAGATTTCAACAAGTGA 59.231 33.333 0.00 0.00 33.70 3.41
6265 7305 8.064814 GTCTTTGTAGAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
6266 7306 7.987458 TCTTTGTAGAGATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
6267 7307 9.261180 CTTTGTAGAGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
6268 7308 8.589335 TTGTAGAGATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
6269 7309 7.722363 TGTAGAGATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 37.97 2.74
6270 7310 8.367911 TGTAGAGATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 36.58 2.29
6271 7311 9.856488 GTAGAGATTTCAACAAGTGACTACATA 57.144 33.333 0.00 0.00 35.39 2.29
6272 7312 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6273 7313 8.589338 AGAGATTTCAACAAGTGACTACATACT 58.411 33.333 0.00 0.00 35.39 2.12
6274 7314 9.856488 GAGATTTCAACAAGTGACTACATACTA 57.144 33.333 0.00 0.00 35.39 1.82
6277 7317 7.884816 TTCAACAAGTGACTACATACTAAGC 57.115 36.000 0.00 0.00 35.39 3.09
6278 7318 6.988522 TCAACAAGTGACTACATACTAAGCA 58.011 36.000 0.00 0.00 0.00 3.91
6279 7319 7.438564 TCAACAAGTGACTACATACTAAGCAA 58.561 34.615 0.00 0.00 0.00 3.91
6280 7320 7.929245 TCAACAAGTGACTACATACTAAGCAAA 59.071 33.333 0.00 0.00 0.00 3.68
6281 7321 8.556194 CAACAAGTGACTACATACTAAGCAAAA 58.444 33.333 0.00 0.00 0.00 2.44
6282 7322 8.848474 ACAAGTGACTACATACTAAGCAAAAT 57.152 30.769 0.00 0.00 0.00 1.82
6283 7323 8.721478 ACAAGTGACTACATACTAAGCAAAATG 58.279 33.333 0.00 0.00 0.00 2.32
6284 7324 8.935844 CAAGTGACTACATACTAAGCAAAATGA 58.064 33.333 0.00 0.00 0.00 2.57
6285 7325 9.502091 AAGTGACTACATACTAAGCAAAATGAA 57.498 29.630 0.00 0.00 0.00 2.57
6286 7326 9.672673 AGTGACTACATACTAAGCAAAATGAAT 57.327 29.630 0.00 0.00 0.00 2.57
6287 7327 9.708222 GTGACTACATACTAAGCAAAATGAATG 57.292 33.333 0.00 0.00 0.00 2.67
6288 7328 9.665719 TGACTACATACTAAGCAAAATGAATGA 57.334 29.630 0.00 0.00 0.00 2.57
6297 7337 9.236006 ACTAAGCAAAATGAATGAATCTACACT 57.764 29.630 0.00 0.00 0.00 3.55
6298 7338 9.713740 CTAAGCAAAATGAATGAATCTACACTC 57.286 33.333 0.00 0.00 0.00 3.51
6299 7339 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
6300 7340 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
6301 7341 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
6334 7374 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
6335 7375 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
6336 7376 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
6337 7377 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
6338 7378 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
6339 7379 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
6340 7380 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
6341 7381 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
6342 7382 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
6343 7383 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
6344 7384 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
6345 7385 3.726607 TGTTGTGTCCATTTGAAATGCC 58.273 40.909 12.26 5.75 0.00 4.40
6346 7386 3.387374 TGTTGTGTCCATTTGAAATGCCT 59.613 39.130 12.26 0.00 0.00 4.75
6347 7387 4.586421 TGTTGTGTCCATTTGAAATGCCTA 59.414 37.500 12.26 0.00 0.00 3.93
6348 7388 5.163513 GTTGTGTCCATTTGAAATGCCTAG 58.836 41.667 12.26 0.00 0.00 3.02
6349 7389 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
6350 7390 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
6351 7391 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
6352 7392 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
6353 7393 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
6354 7394 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
6355 7395 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
6356 7396 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
6357 7397 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
6358 7398 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
6359 7399 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
6369 7409 9.704098 GCCTAGAAAGACAAATATTTAGAAACG 57.296 33.333 0.00 0.00 0.00 3.60
6373 7413 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
6374 7414 8.857694 AAAGACAAATATTTAGAAACGGAGGA 57.142 30.769 0.00 0.00 0.00 3.71
6375 7415 8.857694 AAGACAAATATTTAGAAACGGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
6376 7416 8.857694 AGACAAATATTTAGAAACGGAGGAAA 57.142 30.769 0.00 0.00 0.00 3.13
6377 7417 9.462606 AGACAAATATTTAGAAACGGAGGAAAT 57.537 29.630 0.00 0.00 0.00 2.17
6471 7525 4.211920 ACTGCTTGCTTACCTTTTAACCA 58.788 39.130 0.00 0.00 0.00 3.67
6496 7550 6.126940 ACTGCATATCCTCTCAATGTAACAGT 60.127 38.462 0.00 0.00 0.00 3.55
6535 7589 0.108186 TAACCGCTGCATGTCCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
6546 7600 3.384146 GCATGTCCTCTGAATCTCTCTCA 59.616 47.826 0.00 0.00 0.00 3.27
6547 7601 4.141981 GCATGTCCTCTGAATCTCTCTCAA 60.142 45.833 0.00 0.00 0.00 3.02
6555 7609 4.464244 TCTGAATCTCTCTCAATTCGGTGT 59.536 41.667 0.00 0.00 38.71 4.16
6616 7670 0.249657 TCCACATGTATATGCGCGCA 60.250 50.000 38.27 38.27 37.85 6.09
6620 7674 0.449345 CATGTATATGCGCGCACACG 60.449 55.000 39.05 19.03 44.07 4.49
6665 7719 3.626028 ACGAAGTGGCAGATCAAAAAC 57.374 42.857 0.00 0.00 42.51 2.43
6675 7729 3.705604 CAGATCAAAAACCCACACACAC 58.294 45.455 0.00 0.00 0.00 3.82
6708 7762 1.683385 CACCGGATCTATCTGCAGTCA 59.317 52.381 14.67 1.52 31.76 3.41
6709 7763 2.101415 CACCGGATCTATCTGCAGTCAA 59.899 50.000 14.67 0.00 31.76 3.18
6716 7770 5.587844 GGATCTATCTGCAGTCAAAACACAT 59.412 40.000 14.67 0.00 0.00 3.21
6718 7772 2.780065 TCTGCAGTCAAAACACATGC 57.220 45.000 14.67 0.00 37.40 4.06
6755 7809 1.134788 ACACGAGCAGGGCTATAACAC 60.135 52.381 0.00 0.00 39.88 3.32
6992 8050 7.717875 TGTAAACCTTTAGCTGTGACAATAACT 59.282 33.333 0.00 0.00 0.00 2.24
6997 8055 9.127277 ACCTTTAGCTGTGACAATAACTAAAAA 57.873 29.630 0.00 0.00 31.36 1.94
7063 8121 3.395607 TGATGCCAACCTATAGCATTCCT 59.604 43.478 0.00 0.00 46.81 3.36
7081 8139 1.833630 CCTAGCAGGAGTTGACCATGA 59.166 52.381 0.00 0.00 37.67 3.07
7094 8152 3.905968 TGACCATGACCTTCGTATCCTA 58.094 45.455 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.842091 GCATGGAAAGCCGCTGCG 62.842 66.667 16.34 16.34 44.33 5.18
109 133 2.564947 GCCAGGGATATCAGAGTACTGG 59.435 54.545 0.00 11.83 45.11 4.00
128 155 8.803397 AGAATTAATATTTATTAGGGACCGCC 57.197 34.615 0.00 0.00 30.57 6.13
190 217 4.889409 ACCTTGAAATACATGCGATGGATT 59.111 37.500 0.00 1.95 45.58 3.01
193 220 3.793129 GCACCTTGAAATACATGCGATGG 60.793 47.826 0.00 0.00 33.60 3.51
307 334 6.041296 CCAATTTATGGCCTAAGAATCAGCTT 59.959 38.462 3.32 0.00 43.80 3.74
347 374 5.501897 CGAGCCTATCACAAATTTAACGGTC 60.502 44.000 0.00 0.00 0.00 4.79
350 377 5.712217 TCGAGCCTATCACAAATTTAACG 57.288 39.130 0.00 0.00 0.00 3.18
386 413 2.985751 GCGTATGCAACCATATGTGTG 58.014 47.619 0.89 0.35 41.14 3.82
431 458 3.385755 GCTTGCCATCCTTTCATTATGGT 59.614 43.478 0.00 0.00 41.87 3.55
435 462 5.421277 CAAATGCTTGCCATCCTTTCATTA 58.579 37.500 0.00 0.00 31.43 1.90
436 463 4.258543 CAAATGCTTGCCATCCTTTCATT 58.741 39.130 0.00 0.00 31.43 2.57
454 481 2.957402 TGAGAAGGGTCACTGCAAAT 57.043 45.000 0.00 0.00 0.00 2.32
459 486 7.479352 AGATATGATATGAGAAGGGTCACTG 57.521 40.000 0.00 0.00 0.00 3.66
464 491 8.503428 AGAACAAGATATGATATGAGAAGGGT 57.497 34.615 0.00 0.00 0.00 4.34
466 493 9.585099 GCTAGAACAAGATATGATATGAGAAGG 57.415 37.037 0.00 0.00 0.00 3.46
475 502 5.604231 TCTGGTGGCTAGAACAAGATATGAT 59.396 40.000 0.00 0.00 0.00 2.45
495 522 7.786030 TGTAATTCTTACATCTTCTCCTCTGG 58.214 38.462 0.00 0.00 40.97 3.86
516 543 7.610305 GGTCAATATTCTCCCTGTTCTTTGTAA 59.390 37.037 0.00 0.00 0.00 2.41
532 559 6.910536 ACTTGTCGAATCTGGTCAATATTC 57.089 37.500 0.00 0.00 0.00 1.75
641 668 7.658179 TCATTCATCTTCTTGTTAGACACAC 57.342 36.000 0.00 0.00 33.98 3.82
642 669 8.675705 TTTCATTCATCTTCTTGTTAGACACA 57.324 30.769 0.00 0.00 0.00 3.72
643 670 9.387123 GTTTTCATTCATCTTCTTGTTAGACAC 57.613 33.333 0.00 0.00 0.00 3.67
664 691 4.494091 TCTCCTCCATCCATCTGTTTTC 57.506 45.455 0.00 0.00 0.00 2.29
665 692 4.229123 ACATCTCCTCCATCCATCTGTTTT 59.771 41.667 0.00 0.00 0.00 2.43
673 700 4.140829 AGTCATAGACATCTCCTCCATCCA 60.141 45.833 0.00 0.00 34.60 3.41
695 722 4.153986 GTTGAAGATTCACGTCAATGCAG 58.846 43.478 0.00 0.00 45.29 4.41
700 727 2.548057 GCTGGTTGAAGATTCACGTCAA 59.452 45.455 0.00 0.00 42.63 3.18
704 731 2.693069 AGAGCTGGTTGAAGATTCACG 58.307 47.619 0.00 0.00 36.83 4.35
735 762 6.656693 ACCTGAATTTTGTGGTCTCTCAATAG 59.343 38.462 0.00 0.00 0.00 1.73
742 769 9.391006 TGTAATATACCTGAATTTTGTGGTCTC 57.609 33.333 0.00 0.00 34.33 3.36
776 803 6.592994 GCCCAACTACGATTATAAATCTACCC 59.407 42.308 0.00 0.00 0.00 3.69
804 831 4.094887 CCAAACATAAAGCTGCGTCAGTAT 59.905 41.667 8.32 0.00 33.43 2.12
811 838 1.135402 GTCCCCAAACATAAAGCTGCG 60.135 52.381 0.00 0.00 0.00 5.18
812 839 1.892474 TGTCCCCAAACATAAAGCTGC 59.108 47.619 0.00 0.00 0.00 5.25
813 840 6.469782 AATATGTCCCCAAACATAAAGCTG 57.530 37.500 1.27 0.00 43.40 4.24
925 987 3.401033 TGATTCTCGCAACAAGAAGGA 57.599 42.857 0.00 0.00 36.27 3.36
932 994 5.877564 TGGTACAATTATGATTCTCGCAACA 59.122 36.000 0.00 0.00 31.92 3.33
982 1045 6.024049 GCTCCATCTATTTGACAAGAAAACG 58.976 40.000 0.00 0.00 0.00 3.60
1078 1141 2.948115 TCCAATTGGGCATTCGATGAT 58.052 42.857 24.29 0.00 36.21 2.45
1115 1178 8.150827 TGCTATATGCTCCCTTCTATTGTTAT 57.849 34.615 0.00 0.00 43.37 1.89
1135 1198 5.379187 TGCATCAATATTGTGTCCTGCTAT 58.621 37.500 14.97 0.00 0.00 2.97
1158 1221 7.494298 CCTTGTTGCTTAAACTTGGTAAACAAT 59.506 33.333 0.00 0.00 39.70 2.71
1159 1222 6.814146 CCTTGTTGCTTAAACTTGGTAAACAA 59.186 34.615 0.00 0.00 39.70 2.83
1181 1244 4.998051 TGAAAATAGAAAGCTCACCCCTT 58.002 39.130 0.00 0.00 0.00 3.95
1235 1298 6.366061 TGCAATAGCTATGCGTAGTTTCATAG 59.634 38.462 14.37 5.22 46.76 2.23
1247 1310 7.601073 TTCACTATGTATGCAATAGCTATGC 57.399 36.000 7.09 13.15 44.08 3.14
1327 1390 5.221601 TGCAAAGCATCATTTAAGGGTGAAA 60.222 36.000 0.00 0.00 31.71 2.69
1332 1395 5.075858 TCTTGCAAAGCATCATTTAAGGG 57.924 39.130 0.00 0.00 45.70 3.95
1333 1396 8.706492 TTTATCTTGCAAAGCATCATTTAAGG 57.294 30.769 0.00 0.00 45.70 2.69
1370 1433 6.687081 TCCGTTTATTGTTTTTGTGACTCT 57.313 33.333 0.00 0.00 0.00 3.24
1378 1441 5.848406 TGGATTGCTCCGTTTATTGTTTTT 58.152 33.333 0.00 0.00 45.37 1.94
1391 1454 6.705302 TCTATGATAGTGAATGGATTGCTCC 58.295 40.000 0.00 0.00 42.45 4.70
1412 1475 9.447279 TCCATGTCCTTTATTCCTAAATCTCTA 57.553 33.333 0.00 0.00 0.00 2.43
1414 1477 7.171678 CGTCCATGTCCTTTATTCCTAAATCTC 59.828 40.741 0.00 0.00 0.00 2.75
1416 1479 6.293462 GCGTCCATGTCCTTTATTCCTAAATC 60.293 42.308 0.00 0.00 0.00 2.17
1425 1488 0.828022 TCCGCGTCCATGTCCTTTAT 59.172 50.000 4.92 0.00 0.00 1.40
1426 1489 0.174845 CTCCGCGTCCATGTCCTTTA 59.825 55.000 4.92 0.00 0.00 1.85
1434 1497 0.456221 CTCAGTTACTCCGCGTCCAT 59.544 55.000 4.92 0.00 0.00 3.41
1488 1551 0.032678 CCGATCCAGATGCGCTAACT 59.967 55.000 9.73 1.99 0.00 2.24
1497 1560 3.303351 AAAAATGGCTCCGATCCAGAT 57.697 42.857 0.00 0.00 36.98 2.90
1527 1591 0.323816 TTTCTGGCACACCACAACCA 60.324 50.000 0.00 0.00 42.67 3.67
1533 1597 2.100584 GTGTTCATTTTCTGGCACACCA 59.899 45.455 0.00 0.00 46.51 4.17
1777 1841 1.195448 CGTCTGCATCAGAAACACCAC 59.805 52.381 0.00 0.00 42.46 4.16
2096 2165 4.399303 TCATCTTCATCGTTGACAGCTCTA 59.601 41.667 0.00 0.00 0.00 2.43
2168 2237 6.535161 AAATCCCTGAATATCTGATGGGAA 57.465 37.500 14.55 2.16 45.49 3.97
2298 2367 8.958119 ATATGAATTTTCTGAATGCAGCAATT 57.042 26.923 0.00 9.42 42.01 2.32
2462 2537 1.068434 CAATTTGGGCACGGTGTTCTT 59.932 47.619 10.24 0.00 0.00 2.52
2481 2556 2.415491 CCTTCTCGAACGCACTGATACA 60.415 50.000 0.00 0.00 0.00 2.29
2507 2582 1.769026 AGGTTCTCTGCGAGCATCTA 58.231 50.000 0.00 0.00 0.00 1.98
2577 2652 6.587990 CAGATTGTAGAAGTTGTACACCTCTG 59.412 42.308 23.48 23.48 35.83 3.35
2856 3243 2.346766 TGTGAGCAAACTGACCACAT 57.653 45.000 0.00 0.00 33.42 3.21
3188 3595 9.739276 AATCAGGATAAGTTCAGAATTACAACA 57.261 29.630 0.00 0.00 0.00 3.33
3327 3734 0.322277 AGGCAGGCATCACACTTCAG 60.322 55.000 0.00 0.00 0.00 3.02
3441 3848 9.821662 GTATAAGAACGTTTTTCAAGCTATGTT 57.178 29.630 7.42 0.00 0.00 2.71
3442 3849 9.216117 AGTATAAGAACGTTTTTCAAGCTATGT 57.784 29.630 7.42 0.00 0.00 2.29
3443 3850 9.478019 CAGTATAAGAACGTTTTTCAAGCTATG 57.522 33.333 7.42 0.00 0.00 2.23
3444 3851 9.216117 ACAGTATAAGAACGTTTTTCAAGCTAT 57.784 29.630 7.42 0.00 0.00 2.97
3445 3852 8.492748 CACAGTATAAGAACGTTTTTCAAGCTA 58.507 33.333 7.42 0.00 0.00 3.32
3446 3853 7.352739 CACAGTATAAGAACGTTTTTCAAGCT 58.647 34.615 7.42 0.54 0.00 3.74
3447 3854 6.577427 CCACAGTATAAGAACGTTTTTCAAGC 59.423 38.462 7.42 0.00 0.00 4.01
3448 3855 7.041644 TCCCACAGTATAAGAACGTTTTTCAAG 60.042 37.037 7.42 0.00 0.00 3.02
3449 3856 6.766944 TCCCACAGTATAAGAACGTTTTTCAA 59.233 34.615 7.42 0.00 0.00 2.69
3450 3857 6.203338 GTCCCACAGTATAAGAACGTTTTTCA 59.797 38.462 7.42 0.00 0.00 2.69
3451 3858 6.596703 GTCCCACAGTATAAGAACGTTTTTC 58.403 40.000 7.42 0.00 0.00 2.29
3452 3859 5.178067 CGTCCCACAGTATAAGAACGTTTTT 59.822 40.000 9.22 9.22 0.00 1.94
3453 3860 4.687483 CGTCCCACAGTATAAGAACGTTTT 59.313 41.667 0.46 0.00 0.00 2.43
3454 3861 4.240096 CGTCCCACAGTATAAGAACGTTT 58.760 43.478 0.46 0.00 0.00 3.60
3455 3862 3.367703 CCGTCCCACAGTATAAGAACGTT 60.368 47.826 0.00 0.00 0.00 3.99
3456 3863 2.165030 CCGTCCCACAGTATAAGAACGT 59.835 50.000 0.00 0.00 0.00 3.99
3457 3864 2.424601 TCCGTCCCACAGTATAAGAACG 59.575 50.000 0.00 0.00 0.00 3.95
3458 3865 3.181478 CCTCCGTCCCACAGTATAAGAAC 60.181 52.174 0.00 0.00 0.00 3.01
3459 3866 3.028850 CCTCCGTCCCACAGTATAAGAA 58.971 50.000 0.00 0.00 0.00 2.52
3460 3867 2.662866 CCTCCGTCCCACAGTATAAGA 58.337 52.381 0.00 0.00 0.00 2.10
3461 3868 1.687123 CCCTCCGTCCCACAGTATAAG 59.313 57.143 0.00 0.00 0.00 1.73
3462 3869 1.288633 TCCCTCCGTCCCACAGTATAA 59.711 52.381 0.00 0.00 0.00 0.98
3463 3870 0.928505 TCCCTCCGTCCCACAGTATA 59.071 55.000 0.00 0.00 0.00 1.47
3464 3871 0.397254 CTCCCTCCGTCCCACAGTAT 60.397 60.000 0.00 0.00 0.00 2.12
3465 3872 1.000019 CTCCCTCCGTCCCACAGTA 60.000 63.158 0.00 0.00 0.00 2.74
3466 3873 1.797018 TACTCCCTCCGTCCCACAGT 61.797 60.000 0.00 0.00 0.00 3.55
3467 3874 1.000019 TACTCCCTCCGTCCCACAG 60.000 63.158 0.00 0.00 0.00 3.66
3468 3875 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
3469 3876 0.257039 TAGTACTCCCTCCGTCCCAC 59.743 60.000 0.00 0.00 0.00 4.61
3470 3877 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3471 3878 1.064091 ACTTAGTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
3472 3879 2.433662 ACTTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3473 3880 4.462132 AGAAAACTTAGTACTCCCTCCGTC 59.538 45.833 0.00 0.00 0.00 4.79
3474 3881 4.220163 CAGAAAACTTAGTACTCCCTCCGT 59.780 45.833 0.00 0.00 0.00 4.69
3475 3882 4.461781 TCAGAAAACTTAGTACTCCCTCCG 59.538 45.833 0.00 0.00 0.00 4.63
3476 3883 5.997384 TCAGAAAACTTAGTACTCCCTCC 57.003 43.478 0.00 0.00 0.00 4.30
3477 3884 9.535878 CATATTCAGAAAACTTAGTACTCCCTC 57.464 37.037 0.00 0.00 0.00 4.30
3478 3885 9.047947 ACATATTCAGAAAACTTAGTACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
3714 4121 1.607178 CCAGCAATGCAACCTCCCA 60.607 57.895 8.35 0.00 0.00 4.37
3755 4763 2.125512 AACCATCGAGAGCGTGCC 60.126 61.111 0.00 0.00 38.98 5.01
3758 4766 0.103208 GATGGAACCATCGAGAGCGT 59.897 55.000 16.46 0.00 42.55 5.07
3770 4778 8.023128 TCTTTCGAAATTCAAATCAGATGGAAC 58.977 33.333 11.70 0.00 0.00 3.62
3879 4887 1.978617 CCACGCCAATTTGCTCCCT 60.979 57.895 0.00 0.00 0.00 4.20
3926 4934 5.791336 TCGCATCAGACTCTATTATGGTT 57.209 39.130 0.00 0.00 0.00 3.67
4106 5114 0.322546 AAACACCGGAAGATCCAGCC 60.323 55.000 9.46 0.00 35.91 4.85
4135 5143 4.509230 AGAACGTGATGCATACATGATCAC 59.491 41.667 18.99 12.30 39.35 3.06
4232 5240 5.708736 TTCATCAGCCACCCTTCTATAAA 57.291 39.130 0.00 0.00 0.00 1.40
4340 5352 2.847234 AGGTGGGCCGTGAGACAA 60.847 61.111 0.00 0.00 40.50 3.18
4385 5397 3.866582 CGATGGCCCACTCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
4464 5476 1.255667 CCCCCTTCGTTCCTCTCGAA 61.256 60.000 0.00 0.00 43.41 3.71
4512 5524 2.808543 AGGATCGAAAGTGTTGTTCTGC 59.191 45.455 0.00 0.00 0.00 4.26
4609 5621 5.661056 AGACTGGAAAGAATGTCGATACA 57.339 39.130 0.00 0.00 40.69 2.29
4619 5631 8.868522 AATTCATTCACATAGACTGGAAAGAA 57.131 30.769 0.00 0.00 32.03 2.52
4661 5673 2.358322 TCAAGAGGTTTTGGGGACAC 57.642 50.000 0.00 0.00 42.67 3.67
4666 5678 2.381752 ACCCTTCAAGAGGTTTTGGG 57.618 50.000 0.00 0.00 44.71 4.12
4692 5704 8.206325 AGCTGTCAGTACAAAAAGATATCATG 57.794 34.615 5.32 1.28 34.49 3.07
4776 5788 7.706281 GTCTTAATGACATCTAGTGTGATGG 57.294 40.000 8.96 0.00 45.78 3.51
4796 5808 9.838339 CCTACAATCCAGAATAGTTAATGTCTT 57.162 33.333 0.00 0.00 0.00 3.01
4797 5809 8.993424 ACCTACAATCCAGAATAGTTAATGTCT 58.007 33.333 0.00 0.00 0.00 3.41
4798 5810 9.046296 CACCTACAATCCAGAATAGTTAATGTC 57.954 37.037 0.00 0.00 0.00 3.06
4799 5811 7.993183 CCACCTACAATCCAGAATAGTTAATGT 59.007 37.037 0.00 0.00 0.00 2.71
4837 5849 9.995594 ACTTGCCCCATATACATTATCATAATT 57.004 29.630 0.00 0.00 0.00 1.40
4846 5858 3.600448 AGCACTTGCCCCATATACATT 57.400 42.857 0.00 0.00 43.38 2.71
4909 5921 0.107508 ATCCCCGTTGCACTGAGATG 60.108 55.000 0.00 0.00 0.00 2.90
4959 5974 6.544564 CCACCGAATAACCAACAATTATACCT 59.455 38.462 0.00 0.00 0.00 3.08
5022 6037 9.985730 AACATATTATTCATTACCCAAGCAATG 57.014 29.630 0.00 0.00 34.17 2.82
5211 6233 1.110442 CCACCAAGACCAAAGTTGCA 58.890 50.000 0.00 0.00 0.00 4.08
5237 6259 6.318648 TCCCATTATAGACTGAAACATGTTGC 59.681 38.462 12.82 11.28 0.00 4.17
5417 6439 8.932791 TGAACTCCGATTAGAAAATAACTCAAC 58.067 33.333 0.00 0.00 0.00 3.18
5426 6448 6.315393 GCAACCTATGAACTCCGATTAGAAAA 59.685 38.462 0.00 0.00 0.00 2.29
5430 6452 4.950050 AGCAACCTATGAACTCCGATTAG 58.050 43.478 0.00 0.00 0.00 1.73
5434 6456 2.093658 GGAAGCAACCTATGAACTCCGA 60.094 50.000 0.00 0.00 0.00 4.55
5436 6458 3.636153 AGGAAGCAACCTATGAACTCC 57.364 47.619 0.00 0.00 38.65 3.85
5627 6651 8.437742 GCATGAATTTCTTGTCATAACCTTTTG 58.562 33.333 12.33 0.00 33.15 2.44
5752 6789 4.082733 GCTACCCACCAATTCTTTGTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
5788 6825 5.063880 GGCCAATATCCGATGGGTATATTC 58.936 45.833 0.00 0.00 37.19 1.75
5929 6966 0.169672 CTGCTTTGCCATGTCCTTCG 59.830 55.000 0.00 0.00 0.00 3.79
5993 7030 6.102663 CGACTCTGTTCTCATTTGGAGTAAT 58.897 40.000 0.00 0.00 44.40 1.89
6164 7204 8.732531 GCGAGGTCTTTCTAGTTATATATGTCT 58.267 37.037 0.00 0.00 0.00 3.41
6174 7214 0.601558 TGCGCGAGGTCTTTCTAGTT 59.398 50.000 12.10 0.00 0.00 2.24
6216 7256 5.222337 ACAAATATTTGGGAACAGAGGGAGT 60.222 40.000 27.43 3.28 44.54 3.85
6217 7257 5.264395 ACAAATATTTGGGAACAGAGGGAG 58.736 41.667 27.43 2.64 44.54 4.30
6218 7258 5.015178 AGACAAATATTTGGGAACAGAGGGA 59.985 40.000 27.43 0.00 44.54 4.20
6219 7259 5.264395 AGACAAATATTTGGGAACAGAGGG 58.736 41.667 27.43 3.22 44.54 4.30
6220 7260 6.840780 AAGACAAATATTTGGGAACAGAGG 57.159 37.500 27.43 3.68 44.54 3.69
6221 7261 7.661040 ACAAAGACAAATATTTGGGAACAGAG 58.339 34.615 27.43 13.88 40.62 3.35
6222 7262 7.595819 ACAAAGACAAATATTTGGGAACAGA 57.404 32.000 27.43 0.00 40.62 3.41
6223 7263 8.792633 TCTACAAAGACAAATATTTGGGAACAG 58.207 33.333 27.43 16.34 40.62 3.16
6224 7264 8.698973 TCTACAAAGACAAATATTTGGGAACA 57.301 30.769 27.43 9.20 40.62 3.18
6225 7265 9.010029 TCTCTACAAAGACAAATATTTGGGAAC 57.990 33.333 27.43 16.80 40.62 3.62
6226 7266 9.753674 ATCTCTACAAAGACAAATATTTGGGAA 57.246 29.630 27.43 8.61 40.62 3.97
6227 7267 9.753674 AATCTCTACAAAGACAAATATTTGGGA 57.246 29.630 27.43 9.10 40.62 4.37
6235 7275 9.956720 CTTGTTGAAATCTCTACAAAGACAAAT 57.043 29.630 0.00 0.00 43.56 2.32
6236 7276 8.956426 ACTTGTTGAAATCTCTACAAAGACAAA 58.044 29.630 0.00 0.00 43.56 2.83
6237 7277 8.397906 CACTTGTTGAAATCTCTACAAAGACAA 58.602 33.333 0.00 0.00 43.56 3.18
6238 7278 7.768582 TCACTTGTTGAAATCTCTACAAAGACA 59.231 33.333 0.00 0.00 43.56 3.41
6239 7279 8.064814 GTCACTTGTTGAAATCTCTACAAAGAC 58.935 37.037 10.49 10.49 43.56 3.01
6240 7280 7.987458 AGTCACTTGTTGAAATCTCTACAAAGA 59.013 33.333 0.00 0.00 43.56 2.52
6241 7281 8.147642 AGTCACTTGTTGAAATCTCTACAAAG 57.852 34.615 0.00 0.00 43.56 2.77
6242 7282 9.042008 GTAGTCACTTGTTGAAATCTCTACAAA 57.958 33.333 0.00 0.00 43.56 2.83
6243 7283 8.201464 TGTAGTCACTTGTTGAAATCTCTACAA 58.799 33.333 0.00 0.00 42.53 2.41
6244 7284 7.722363 TGTAGTCACTTGTTGAAATCTCTACA 58.278 34.615 0.00 0.00 36.87 2.74
6245 7285 8.764524 ATGTAGTCACTTGTTGAAATCTCTAC 57.235 34.615 0.00 0.00 35.39 2.59
6246 7286 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6247 7287 8.589338 AGTATGTAGTCACTTGTTGAAATCTCT 58.411 33.333 0.00 0.00 35.39 3.10
6248 7288 8.764524 AGTATGTAGTCACTTGTTGAAATCTC 57.235 34.615 0.00 0.00 35.39 2.75
6251 7291 8.936864 GCTTAGTATGTAGTCACTTGTTGAAAT 58.063 33.333 0.00 0.00 35.39 2.17
6252 7292 7.929245 TGCTTAGTATGTAGTCACTTGTTGAAA 59.071 33.333 0.00 0.00 35.39 2.69
6253 7293 7.438564 TGCTTAGTATGTAGTCACTTGTTGAA 58.561 34.615 0.00 0.00 35.39 2.69
6254 7294 6.988522 TGCTTAGTATGTAGTCACTTGTTGA 58.011 36.000 0.00 0.00 0.00 3.18
6255 7295 7.652300 TTGCTTAGTATGTAGTCACTTGTTG 57.348 36.000 0.00 0.00 0.00 3.33
6256 7296 8.671384 TTTTGCTTAGTATGTAGTCACTTGTT 57.329 30.769 0.00 0.00 0.00 2.83
6257 7297 8.721478 CATTTTGCTTAGTATGTAGTCACTTGT 58.279 33.333 0.00 0.00 0.00 3.16
6258 7298 8.935844 TCATTTTGCTTAGTATGTAGTCACTTG 58.064 33.333 0.00 0.00 0.00 3.16
6259 7299 9.502091 TTCATTTTGCTTAGTATGTAGTCACTT 57.498 29.630 0.00 0.00 0.00 3.16
6260 7300 9.672673 ATTCATTTTGCTTAGTATGTAGTCACT 57.327 29.630 0.00 0.00 0.00 3.41
6261 7301 9.708222 CATTCATTTTGCTTAGTATGTAGTCAC 57.292 33.333 0.00 0.00 0.00 3.67
6262 7302 9.665719 TCATTCATTTTGCTTAGTATGTAGTCA 57.334 29.630 0.00 0.00 0.00 3.41
6271 7311 9.236006 AGTGTAGATTCATTCATTTTGCTTAGT 57.764 29.630 0.00 0.00 0.00 2.24
6272 7312 9.713740 GAGTGTAGATTCATTCATTTTGCTTAG 57.286 33.333 0.00 0.00 0.00 2.18
6273 7313 9.453572 AGAGTGTAGATTCATTCATTTTGCTTA 57.546 29.630 0.00 0.00 0.00 3.09
6274 7314 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
6275 7315 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
6313 7353 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
6314 7354 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
6316 7356 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
6317 7357 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
6318 7358 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
6319 7359 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
6320 7360 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
6321 7361 5.348451 GGCATTTCAAATGGACACAACATAC 59.652 40.000 12.14 0.00 0.00 2.39
6322 7362 5.245751 AGGCATTTCAAATGGACACAACATA 59.754 36.000 12.14 0.00 0.00 2.29
6323 7363 4.040706 AGGCATTTCAAATGGACACAACAT 59.959 37.500 12.14 0.00 0.00 2.71
6324 7364 3.387374 AGGCATTTCAAATGGACACAACA 59.613 39.130 12.14 0.00 0.00 3.33
6325 7365 3.993920 AGGCATTTCAAATGGACACAAC 58.006 40.909 12.14 0.00 0.00 3.32
6326 7366 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
6327 7367 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
6328 7368 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
6329 7369 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
6330 7370 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
6331 7371 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
6332 7372 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
6333 7373 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
6343 7383 9.704098 CGTTTCTAAATATTTGTCTTTCTAGGC 57.296 33.333 11.05 0.00 0.00 3.93
6347 7387 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
6348 7388 8.943002 TCCTCCGTTTCTAAATATTTGTCTTTC 58.057 33.333 11.05 0.00 0.00 2.62
6349 7389 8.857694 TCCTCCGTTTCTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
6350 7390 8.857694 TTCCTCCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
6351 7391 8.857694 TTTCCTCCGTTTCTAAATATTTGTCT 57.142 30.769 11.05 0.00 0.00 3.41
6362 7402 9.456147 TCAAAAATCATATTTCCTCCGTTTCTA 57.544 29.630 0.00 0.00 0.00 2.10
6363 7403 8.348285 TCAAAAATCATATTTCCTCCGTTTCT 57.652 30.769 0.00 0.00 0.00 2.52
6366 7406 9.408648 AGTATCAAAAATCATATTTCCTCCGTT 57.591 29.630 0.00 0.00 0.00 4.44
6367 7407 8.980481 AGTATCAAAAATCATATTTCCTCCGT 57.020 30.769 0.00 0.00 0.00 4.69
6368 7408 9.277783 AGAGTATCAAAAATCATATTTCCTCCG 57.722 33.333 0.00 0.00 37.82 4.63
6378 7418 9.425248 AGAGAGAGAGAGAGTATCAAAAATCAT 57.575 33.333 0.00 0.00 37.82 2.45
6471 7525 6.126940 ACTGTTACATTGAGAGGATATGCAGT 60.127 38.462 0.00 0.00 0.00 4.40
6496 7550 7.424803 CGGTTAAAAATGGAGATGATATGCAA 58.575 34.615 0.00 0.00 0.00 4.08
6535 7589 6.147821 TGAAAACACCGAATTGAGAGAGATTC 59.852 38.462 0.00 0.00 0.00 2.52
6616 7670 2.192664 TTGATTGGGTATGTGCGTGT 57.807 45.000 0.00 0.00 0.00 4.49
6620 7674 3.706086 AGGGAATTTGATTGGGTATGTGC 59.294 43.478 0.00 0.00 0.00 4.57
6664 7718 0.323360 AGTTTGCTGTGTGTGTGGGT 60.323 50.000 0.00 0.00 0.00 4.51
6665 7719 1.603802 CTAGTTTGCTGTGTGTGTGGG 59.396 52.381 0.00 0.00 0.00 4.61
6675 7729 2.736144 TCCGGTGTACTAGTTTGCTG 57.264 50.000 0.00 0.00 0.00 4.41
6708 7762 1.058284 ATGGGCTTGGCATGTGTTTT 58.942 45.000 2.12 0.00 0.00 2.43
6709 7763 0.322322 CATGGGCTTGGCATGTGTTT 59.678 50.000 2.12 0.00 0.00 2.83
6716 7770 0.252148 TGGATTTCATGGGCTTGGCA 60.252 50.000 0.00 0.00 0.00 4.92
6718 7772 1.205417 GTGTGGATTTCATGGGCTTGG 59.795 52.381 0.00 0.00 0.00 3.61
6790 7844 3.660865 AGAGAATTAACAAACGCGACCT 58.339 40.909 15.93 0.00 0.00 3.85
6805 7859 4.102838 CCCTCATCACATCCTTGAGAGAAT 59.897 45.833 0.90 0.00 39.36 2.40
6860 7914 7.594758 ACAAATGTGATAATACTTGTGTTGCAC 59.405 33.333 0.00 0.00 34.56 4.57
6922 7976 8.560039 TGGCCTCTCTTATATTGCCATATTATT 58.440 33.333 3.32 0.00 43.49 1.40
7009 8067 9.717892 AACTTCTTTTGAGAAAATTTCTACGAC 57.282 29.630 8.38 0.00 40.87 4.34
7063 8121 1.555075 GGTCATGGTCAACTCCTGCTA 59.445 52.381 0.00 0.00 0.00 3.49
7094 8152 1.144936 GCTAGGCAGCCTCGACATT 59.855 57.895 20.38 0.00 42.37 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.