Multiple sequence alignment - TraesCS6B01G390200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G390200 chr6B 100.000 3333 0 0 1 3333 664519453 664522785 0.000000e+00 6156
1 TraesCS6B01G390200 chr6B 90.267 1048 72 8 803 1850 664500015 664501032 0.000000e+00 1343
2 TraesCS6B01G390200 chr6B 86.275 510 42 9 1844 2337 664501222 664501719 2.280000e-146 529
3 TraesCS6B01G390200 chr6A 92.727 2640 117 28 760 3333 587967207 587969837 0.000000e+00 3742
4 TraesCS6B01G390200 chr6A 87.595 1314 112 28 803 2086 587895533 587894241 0.000000e+00 1476
5 TraesCS6B01G390200 chr6A 89.080 522 28 7 1835 2339 587894248 587893739 3.650000e-174 621
6 TraesCS6B01G390200 chr6A 81.778 686 91 18 2672 3333 587893317 587892642 8.130000e-151 544
7 TraesCS6B01G390200 chr6A 96.842 190 6 0 446 635 587965544 587965733 5.370000e-83 318
8 TraesCS6B01G390200 chr6D 89.029 1978 160 27 442 2395 439654893 439656837 0.000000e+00 2398
9 TraesCS6B01G390200 chr6D 87.085 1897 175 35 469 2339 439621354 439619502 0.000000e+00 2082
10 TraesCS6B01G390200 chr6D 87.893 826 66 13 2536 3333 439659339 439660158 0.000000e+00 941
11 TraesCS6B01G390200 chr6D 82.547 636 91 9 2713 3333 439619081 439618451 2.920000e-150 542
12 TraesCS6B01G390200 chr6D 91.818 110 6 3 299 406 439654461 439654569 2.070000e-32 150
13 TraesCS6B01G390200 chr5A 99.648 284 1 0 1 284 365609728 365610011 1.370000e-143 520
14 TraesCS6B01G390200 chr2A 98.635 293 3 1 1 292 568997950 568997658 4.930000e-143 518
15 TraesCS6B01G390200 chr2A 98.951 286 3 0 1 286 741326296 741326581 2.290000e-141 512
16 TraesCS6B01G390200 chr4A 98.958 288 3 0 1 288 426071357 426071644 1.770000e-142 516
17 TraesCS6B01G390200 chr7A 99.291 282 2 0 1 282 448445059 448445340 8.250000e-141 510
18 TraesCS6B01G390200 chr5B 98.947 285 3 0 1 285 224609588 224609304 8.250000e-141 510
19 TraesCS6B01G390200 chr4B 98.616 289 2 2 1 289 510727483 510727197 8.250000e-141 510
20 TraesCS6B01G390200 chr3A 99.291 282 2 0 1 282 728375746 728376027 8.250000e-141 510
21 TraesCS6B01G390200 chr7B 99.288 281 2 0 1 281 740529352 740529632 2.970000e-140 508


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G390200 chr6B 664519453 664522785 3332 False 6156.000000 6156 100.0000 1 3333 1 chr6B.!!$F1 3332
1 TraesCS6B01G390200 chr6B 664500015 664501719 1704 False 936.000000 1343 88.2710 803 2337 2 chr6B.!!$F2 1534
2 TraesCS6B01G390200 chr6A 587965544 587969837 4293 False 2030.000000 3742 94.7845 446 3333 2 chr6A.!!$F1 2887
3 TraesCS6B01G390200 chr6A 587892642 587895533 2891 True 880.333333 1476 86.1510 803 3333 3 chr6A.!!$R1 2530
4 TraesCS6B01G390200 chr6D 439618451 439621354 2903 True 1312.000000 2082 84.8160 469 3333 2 chr6D.!!$R1 2864
5 TraesCS6B01G390200 chr6D 439654461 439660158 5697 False 1163.000000 2398 89.5800 299 3333 3 chr6D.!!$F1 3034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.035056 AGGCTTGTAGGCGCAATCTT 60.035 50.0 10.83 0.0 46.58 2.40 F
425 428 0.108945 GAAGGCATGCAGGAACAAGC 60.109 55.0 21.36 0.0 33.62 4.01 F
431 434 0.178953 ATGCAGGAACAAGCCAAGGT 60.179 50.0 0.00 0.0 0.00 3.50 F
443 446 0.246635 GCCAAGGTAGACGAGAAGCA 59.753 55.0 0.00 0.0 0.00 3.91 F
1394 3047 0.802494 GTGATCGGCGTTTGATGGTT 59.198 50.0 6.85 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 4037 0.109597 GCGTCAAATTGGCACAGAGG 60.110 55.000 0.00 0.00 42.39 3.69 R
2074 4213 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30 R
2075 4214 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71 R
2076 4215 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69 R
3272 8043 0.248458 CAAGTCCACCACAACGTTGC 60.248 55.000 27.61 9.79 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.996921 ATCACAGAAGCAACTCCAGAT 57.003 42.857 0.00 0.00 0.00 2.90
22 23 3.325293 TCACAGAAGCAACTCCAGATC 57.675 47.619 0.00 0.00 0.00 2.75
23 24 2.634453 TCACAGAAGCAACTCCAGATCA 59.366 45.455 0.00 0.00 0.00 2.92
24 25 3.071457 TCACAGAAGCAACTCCAGATCAA 59.929 43.478 0.00 0.00 0.00 2.57
25 26 3.436015 CACAGAAGCAACTCCAGATCAAG 59.564 47.826 0.00 0.00 0.00 3.02
26 27 3.072184 ACAGAAGCAACTCCAGATCAAGT 59.928 43.478 0.00 0.00 0.00 3.16
27 28 4.070716 CAGAAGCAACTCCAGATCAAGTT 58.929 43.478 0.00 0.00 36.16 2.66
28 29 4.518211 CAGAAGCAACTCCAGATCAAGTTT 59.482 41.667 0.00 0.00 33.53 2.66
29 30 5.702670 CAGAAGCAACTCCAGATCAAGTTTA 59.297 40.000 0.00 0.00 33.53 2.01
30 31 6.373774 CAGAAGCAACTCCAGATCAAGTTTAT 59.626 38.462 0.00 0.00 33.53 1.40
31 32 6.597280 AGAAGCAACTCCAGATCAAGTTTATC 59.403 38.462 0.00 1.03 33.53 1.75
32 33 6.059787 AGCAACTCCAGATCAAGTTTATCT 57.940 37.500 0.00 0.00 33.53 1.98
33 34 6.112058 AGCAACTCCAGATCAAGTTTATCTC 58.888 40.000 0.00 0.00 33.53 2.75
34 35 5.877012 GCAACTCCAGATCAAGTTTATCTCA 59.123 40.000 0.00 0.00 33.53 3.27
35 36 6.541641 GCAACTCCAGATCAAGTTTATCTCAT 59.458 38.462 0.00 0.00 33.53 2.90
36 37 7.254727 GCAACTCCAGATCAAGTTTATCTCATC 60.255 40.741 0.00 0.00 33.53 2.92
37 38 7.673641 ACTCCAGATCAAGTTTATCTCATCT 57.326 36.000 0.00 0.00 31.22 2.90
38 39 8.774546 ACTCCAGATCAAGTTTATCTCATCTA 57.225 34.615 0.00 0.00 31.22 1.98
39 40 9.206690 ACTCCAGATCAAGTTTATCTCATCTAA 57.793 33.333 0.00 0.00 31.22 2.10
40 41 9.695526 CTCCAGATCAAGTTTATCTCATCTAAG 57.304 37.037 0.00 0.00 31.22 2.18
41 42 8.646004 TCCAGATCAAGTTTATCTCATCTAAGG 58.354 37.037 0.00 0.00 31.22 2.69
42 43 8.646004 CCAGATCAAGTTTATCTCATCTAAGGA 58.354 37.037 0.00 0.00 31.22 3.36
47 48 9.823647 TCAAGTTTATCTCATCTAAGGATCAAC 57.176 33.333 0.00 0.00 0.00 3.18
48 49 9.829507 CAAGTTTATCTCATCTAAGGATCAACT 57.170 33.333 0.00 0.00 36.26 3.16
50 51 9.829507 AGTTTATCTCATCTAAGGATCAACTTG 57.170 33.333 0.00 0.00 33.10 3.16
51 52 8.555361 GTTTATCTCATCTAAGGATCAACTTGC 58.445 37.037 0.00 0.00 32.02 4.01
52 53 5.682234 TCTCATCTAAGGATCAACTTGCA 57.318 39.130 0.00 0.00 32.02 4.08
53 54 5.668471 TCTCATCTAAGGATCAACTTGCAG 58.332 41.667 0.00 0.00 32.02 4.41
54 55 5.423290 TCTCATCTAAGGATCAACTTGCAGA 59.577 40.000 0.00 0.00 32.02 4.26
55 56 5.423015 TCATCTAAGGATCAACTTGCAGAC 58.577 41.667 0.00 0.00 32.02 3.51
56 57 4.890158 TCTAAGGATCAACTTGCAGACA 57.110 40.909 0.00 0.00 32.02 3.41
57 58 5.426689 TCTAAGGATCAACTTGCAGACAT 57.573 39.130 0.00 0.00 32.02 3.06
58 59 5.423015 TCTAAGGATCAACTTGCAGACATC 58.577 41.667 0.00 0.00 32.02 3.06
59 60 3.996921 AGGATCAACTTGCAGACATCT 57.003 42.857 0.00 0.00 0.00 2.90
60 61 4.298103 AGGATCAACTTGCAGACATCTT 57.702 40.909 0.00 0.00 0.00 2.40
61 62 4.260170 AGGATCAACTTGCAGACATCTTC 58.740 43.478 0.00 0.00 0.00 2.87
62 63 4.005650 GGATCAACTTGCAGACATCTTCA 58.994 43.478 0.00 0.00 0.00 3.02
63 64 4.142730 GGATCAACTTGCAGACATCTTCAC 60.143 45.833 0.00 0.00 0.00 3.18
64 65 4.077300 TCAACTTGCAGACATCTTCACT 57.923 40.909 0.00 0.00 0.00 3.41
65 66 5.213891 TCAACTTGCAGACATCTTCACTA 57.786 39.130 0.00 0.00 0.00 2.74
66 67 5.610398 TCAACTTGCAGACATCTTCACTAA 58.390 37.500 0.00 0.00 0.00 2.24
67 68 5.698089 TCAACTTGCAGACATCTTCACTAAG 59.302 40.000 0.00 0.00 0.00 2.18
68 69 3.999663 ACTTGCAGACATCTTCACTAAGC 59.000 43.478 0.00 0.00 32.36 3.09
69 70 2.977914 TGCAGACATCTTCACTAAGCC 58.022 47.619 0.00 0.00 32.36 4.35
70 71 2.568956 TGCAGACATCTTCACTAAGCCT 59.431 45.455 0.00 0.00 32.36 4.58
71 72 3.008375 TGCAGACATCTTCACTAAGCCTT 59.992 43.478 0.00 0.00 32.36 4.35
72 73 4.006319 GCAGACATCTTCACTAAGCCTTT 58.994 43.478 0.00 0.00 32.36 3.11
73 74 5.178797 GCAGACATCTTCACTAAGCCTTTA 58.821 41.667 0.00 0.00 32.36 1.85
74 75 5.064071 GCAGACATCTTCACTAAGCCTTTAC 59.936 44.000 0.00 0.00 32.36 2.01
75 76 5.582665 CAGACATCTTCACTAAGCCTTTACC 59.417 44.000 0.00 0.00 32.36 2.85
76 77 4.504858 ACATCTTCACTAAGCCTTTACCG 58.495 43.478 0.00 0.00 32.36 4.02
77 78 2.968675 TCTTCACTAAGCCTTTACCGC 58.031 47.619 0.00 0.00 32.36 5.68
78 79 2.565834 TCTTCACTAAGCCTTTACCGCT 59.434 45.455 0.00 0.00 38.53 5.52
79 80 2.380084 TCACTAAGCCTTTACCGCTG 57.620 50.000 0.00 0.00 36.47 5.18
80 81 0.727398 CACTAAGCCTTTACCGCTGC 59.273 55.000 0.00 0.00 36.47 5.25
81 82 0.392595 ACTAAGCCTTTACCGCTGCC 60.393 55.000 0.00 0.00 36.47 4.85
82 83 0.392461 CTAAGCCTTTACCGCTGCCA 60.392 55.000 0.00 0.00 36.47 4.92
83 84 0.675522 TAAGCCTTTACCGCTGCCAC 60.676 55.000 0.00 0.00 36.47 5.01
84 85 2.671619 GCCTTTACCGCTGCCACA 60.672 61.111 0.00 0.00 0.00 4.17
85 86 2.690778 GCCTTTACCGCTGCCACAG 61.691 63.158 0.00 0.00 34.12 3.66
86 87 1.302511 CCTTTACCGCTGCCACAGT 60.303 57.895 0.00 0.00 33.43 3.55
87 88 0.889186 CCTTTACCGCTGCCACAGTT 60.889 55.000 0.00 0.00 33.43 3.16
88 89 0.951558 CTTTACCGCTGCCACAGTTT 59.048 50.000 0.00 0.00 33.43 2.66
89 90 0.665835 TTTACCGCTGCCACAGTTTG 59.334 50.000 0.00 0.00 33.43 2.93
90 91 0.179043 TTACCGCTGCCACAGTTTGA 60.179 50.000 0.00 0.00 33.43 2.69
91 92 0.602638 TACCGCTGCCACAGTTTGAG 60.603 55.000 0.00 0.00 33.43 3.02
92 93 2.620112 CCGCTGCCACAGTTTGAGG 61.620 63.158 0.00 0.00 33.43 3.86
100 101 2.154462 CCACAGTTTGAGGCTTGTAGG 58.846 52.381 0.00 0.00 0.00 3.18
101 102 1.537202 CACAGTTTGAGGCTTGTAGGC 59.463 52.381 0.00 0.00 41.73 3.93
102 103 0.798776 CAGTTTGAGGCTTGTAGGCG 59.201 55.000 0.00 0.00 46.58 5.52
103 104 0.955919 AGTTTGAGGCTTGTAGGCGC 60.956 55.000 0.00 0.00 46.58 6.53
105 106 2.747022 TGAGGCTTGTAGGCGCAA 59.253 55.556 10.83 0.00 46.44 4.85
106 107 1.299648 TGAGGCTTGTAGGCGCAAT 59.700 52.632 10.83 0.00 46.44 3.56
107 108 0.744414 TGAGGCTTGTAGGCGCAATC 60.744 55.000 10.83 0.00 46.44 2.67
108 109 0.462759 GAGGCTTGTAGGCGCAATCT 60.463 55.000 10.83 0.00 46.58 2.40
109 110 0.035056 AGGCTTGTAGGCGCAATCTT 60.035 50.000 10.83 0.00 46.58 2.40
110 111 1.209504 AGGCTTGTAGGCGCAATCTTA 59.790 47.619 10.83 0.00 46.58 2.10
111 112 1.330829 GGCTTGTAGGCGCAATCTTAC 59.669 52.381 10.83 4.10 0.00 2.34
112 113 1.330829 GCTTGTAGGCGCAATCTTACC 59.669 52.381 10.83 0.00 0.00 2.85
113 114 1.940613 CTTGTAGGCGCAATCTTACCC 59.059 52.381 10.83 0.00 0.00 3.69
114 115 1.200519 TGTAGGCGCAATCTTACCCT 58.799 50.000 10.83 0.00 0.00 4.34
115 116 1.557832 TGTAGGCGCAATCTTACCCTT 59.442 47.619 10.83 0.00 0.00 3.95
116 117 2.210961 GTAGGCGCAATCTTACCCTTC 58.789 52.381 10.83 0.00 0.00 3.46
117 118 0.912486 AGGCGCAATCTTACCCTTCT 59.088 50.000 10.83 0.00 0.00 2.85
118 119 1.134371 AGGCGCAATCTTACCCTTCTC 60.134 52.381 10.83 0.00 0.00 2.87
119 120 1.406887 GGCGCAATCTTACCCTTCTCA 60.407 52.381 10.83 0.00 0.00 3.27
120 121 1.936547 GCGCAATCTTACCCTTCTCAG 59.063 52.381 0.30 0.00 0.00 3.35
121 122 2.678190 GCGCAATCTTACCCTTCTCAGT 60.678 50.000 0.30 0.00 0.00 3.41
122 123 3.600388 CGCAATCTTACCCTTCTCAGTT 58.400 45.455 0.00 0.00 0.00 3.16
123 124 3.619038 CGCAATCTTACCCTTCTCAGTTC 59.381 47.826 0.00 0.00 0.00 3.01
124 125 4.621747 CGCAATCTTACCCTTCTCAGTTCT 60.622 45.833 0.00 0.00 0.00 3.01
125 126 5.249420 GCAATCTTACCCTTCTCAGTTCTT 58.751 41.667 0.00 0.00 0.00 2.52
126 127 5.707764 GCAATCTTACCCTTCTCAGTTCTTT 59.292 40.000 0.00 0.00 0.00 2.52
127 128 6.879458 GCAATCTTACCCTTCTCAGTTCTTTA 59.121 38.462 0.00 0.00 0.00 1.85
128 129 7.065204 GCAATCTTACCCTTCTCAGTTCTTTAG 59.935 40.741 0.00 0.00 0.00 1.85
129 130 8.314751 CAATCTTACCCTTCTCAGTTCTTTAGA 58.685 37.037 0.00 0.00 0.00 2.10
130 131 7.850935 TCTTACCCTTCTCAGTTCTTTAGAA 57.149 36.000 0.00 0.00 0.00 2.10
131 132 8.258850 TCTTACCCTTCTCAGTTCTTTAGAAA 57.741 34.615 0.00 0.00 35.58 2.52
132 133 8.368668 TCTTACCCTTCTCAGTTCTTTAGAAAG 58.631 37.037 0.00 0.00 35.58 2.62
133 134 6.502074 ACCCTTCTCAGTTCTTTAGAAAGT 57.498 37.500 2.10 0.00 37.31 2.66
134 135 6.292150 ACCCTTCTCAGTTCTTTAGAAAGTG 58.708 40.000 2.10 0.00 37.31 3.16
135 136 5.703130 CCCTTCTCAGTTCTTTAGAAAGTGG 59.297 44.000 2.10 0.00 37.31 4.00
136 137 5.180304 CCTTCTCAGTTCTTTAGAAAGTGGC 59.820 44.000 2.10 0.00 37.31 5.01
137 138 5.552870 TCTCAGTTCTTTAGAAAGTGGCT 57.447 39.130 2.10 0.00 37.31 4.75
138 139 6.665992 TCTCAGTTCTTTAGAAAGTGGCTA 57.334 37.500 2.10 0.00 37.31 3.93
139 140 7.062749 TCTCAGTTCTTTAGAAAGTGGCTAA 57.937 36.000 2.10 0.00 37.31 3.09
140 141 7.155328 TCTCAGTTCTTTAGAAAGTGGCTAAG 58.845 38.462 2.10 0.00 37.31 2.18
141 142 7.015292 TCTCAGTTCTTTAGAAAGTGGCTAAGA 59.985 37.037 2.10 0.00 37.31 2.10
142 143 7.680730 TCAGTTCTTTAGAAAGTGGCTAAGAT 58.319 34.615 2.10 0.00 37.31 2.40
143 144 8.157476 TCAGTTCTTTAGAAAGTGGCTAAGATT 58.843 33.333 2.10 0.00 37.31 2.40
144 145 8.233190 CAGTTCTTTAGAAAGTGGCTAAGATTG 58.767 37.037 2.10 0.00 37.31 2.67
145 146 8.157476 AGTTCTTTAGAAAGTGGCTAAGATTGA 58.843 33.333 2.10 0.00 37.31 2.57
146 147 8.447053 GTTCTTTAGAAAGTGGCTAAGATTGAG 58.553 37.037 2.10 0.00 37.31 3.02
147 148 7.106239 TCTTTAGAAAGTGGCTAAGATTGAGG 58.894 38.462 2.10 0.00 37.31 3.86
148 149 4.227864 AGAAAGTGGCTAAGATTGAGGG 57.772 45.455 0.00 0.00 0.00 4.30
149 150 3.846588 AGAAAGTGGCTAAGATTGAGGGA 59.153 43.478 0.00 0.00 0.00 4.20
150 151 3.922171 AAGTGGCTAAGATTGAGGGAG 57.078 47.619 0.00 0.00 0.00 4.30
151 152 2.122768 AGTGGCTAAGATTGAGGGAGG 58.877 52.381 0.00 0.00 0.00 4.30
152 153 1.141858 GTGGCTAAGATTGAGGGAGGG 59.858 57.143 0.00 0.00 0.00 4.30
153 154 1.274416 TGGCTAAGATTGAGGGAGGGT 60.274 52.381 0.00 0.00 0.00 4.34
154 155 1.141858 GGCTAAGATTGAGGGAGGGTG 59.858 57.143 0.00 0.00 0.00 4.61
155 156 1.840635 GCTAAGATTGAGGGAGGGTGT 59.159 52.381 0.00 0.00 0.00 4.16
156 157 2.239907 GCTAAGATTGAGGGAGGGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
157 158 3.454812 GCTAAGATTGAGGGAGGGTGTTA 59.545 47.826 0.00 0.00 0.00 2.41
158 159 4.443598 GCTAAGATTGAGGGAGGGTGTTAG 60.444 50.000 0.00 0.00 0.00 2.34
159 160 3.491766 AGATTGAGGGAGGGTGTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
160 161 3.108376 AGATTGAGGGAGGGTGTTAGAC 58.892 50.000 0.00 0.00 0.00 2.59
161 162 2.715763 TTGAGGGAGGGTGTTAGACT 57.284 50.000 0.00 0.00 0.00 3.24
162 163 3.839323 TTGAGGGAGGGTGTTAGACTA 57.161 47.619 0.00 0.00 0.00 2.59
163 164 4.348020 TTGAGGGAGGGTGTTAGACTAT 57.652 45.455 0.00 0.00 0.00 2.12
164 165 3.643237 TGAGGGAGGGTGTTAGACTATG 58.357 50.000 0.00 0.00 0.00 2.23
165 166 3.012502 TGAGGGAGGGTGTTAGACTATGT 59.987 47.826 0.00 0.00 0.00 2.29
166 167 4.231195 TGAGGGAGGGTGTTAGACTATGTA 59.769 45.833 0.00 0.00 0.00 2.29
167 168 5.103215 TGAGGGAGGGTGTTAGACTATGTAT 60.103 44.000 0.00 0.00 0.00 2.29
168 169 6.103649 TGAGGGAGGGTGTTAGACTATGTATA 59.896 42.308 0.00 0.00 0.00 1.47
169 170 6.553857 AGGGAGGGTGTTAGACTATGTATAG 58.446 44.000 0.00 0.00 36.46 1.31
170 171 5.185442 GGGAGGGTGTTAGACTATGTATAGC 59.815 48.000 0.00 0.00 33.68 2.97
171 172 6.011481 GGAGGGTGTTAGACTATGTATAGCT 58.989 44.000 0.00 0.00 33.68 3.32
172 173 6.494146 GGAGGGTGTTAGACTATGTATAGCTT 59.506 42.308 0.00 0.00 33.68 3.74
173 174 7.309316 GGAGGGTGTTAGACTATGTATAGCTTC 60.309 44.444 0.00 0.00 33.68 3.86
174 175 7.299134 AGGGTGTTAGACTATGTATAGCTTCT 58.701 38.462 0.00 0.00 33.68 2.85
175 176 7.231722 AGGGTGTTAGACTATGTATAGCTTCTG 59.768 40.741 0.00 0.00 33.68 3.02
176 177 7.014422 GGGTGTTAGACTATGTATAGCTTCTGT 59.986 40.741 0.00 0.00 33.68 3.41
177 178 9.064706 GGTGTTAGACTATGTATAGCTTCTGTA 57.935 37.037 0.00 0.00 33.68 2.74
178 179 9.881529 GTGTTAGACTATGTATAGCTTCTGTAC 57.118 37.037 0.00 0.00 33.68 2.90
179 180 9.064706 TGTTAGACTATGTATAGCTTCTGTACC 57.935 37.037 0.00 0.00 33.68 3.34
180 181 9.287373 GTTAGACTATGTATAGCTTCTGTACCT 57.713 37.037 0.00 0.00 33.68 3.08
183 184 9.456147 AGACTATGTATAGCTTCTGTACCTATG 57.544 37.037 0.00 0.00 33.68 2.23
184 185 9.233649 GACTATGTATAGCTTCTGTACCTATGT 57.766 37.037 0.00 0.00 33.68 2.29
241 242 9.744125 TTATATATAATGAGATAAGCCACCCCT 57.256 33.333 0.81 0.00 0.00 4.79
243 244 7.682787 ATATAATGAGATAAGCCACCCCTAG 57.317 40.000 0.00 0.00 0.00 3.02
244 245 3.637821 ATGAGATAAGCCACCCCTAGA 57.362 47.619 0.00 0.00 0.00 2.43
245 246 2.964209 TGAGATAAGCCACCCCTAGAG 58.036 52.381 0.00 0.00 0.00 2.43
246 247 2.252714 GAGATAAGCCACCCCTAGAGG 58.747 57.143 0.00 0.00 0.00 3.69
257 258 2.377136 CCTAGAGGGTTGTGCTGGT 58.623 57.895 0.00 0.00 0.00 4.00
258 259 0.693049 CCTAGAGGGTTGTGCTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
259 260 1.906574 CCTAGAGGGTTGTGCTGGTTA 59.093 52.381 0.00 0.00 0.00 2.85
260 261 2.354805 CCTAGAGGGTTGTGCTGGTTAC 60.355 54.545 0.00 0.00 0.00 2.50
261 262 0.400594 AGAGGGTTGTGCTGGTTACC 59.599 55.000 0.00 0.00 0.00 2.85
262 263 4.090723 GGGTTGTGCTGGTTACCC 57.909 61.111 0.00 0.00 43.14 3.69
263 264 4.911901 GGTTGTGCTGGTTACCCA 57.088 55.556 0.00 0.00 38.87 4.51
264 265 3.119225 GGTTGTGCTGGTTACCCAA 57.881 52.632 0.00 0.00 41.27 4.12
265 266 1.404843 GGTTGTGCTGGTTACCCAAA 58.595 50.000 0.00 0.00 41.27 3.28
266 267 1.757699 GGTTGTGCTGGTTACCCAAAA 59.242 47.619 0.00 0.00 41.27 2.44
267 268 2.482316 GGTTGTGCTGGTTACCCAAAAC 60.482 50.000 0.00 2.12 41.27 2.43
268 269 2.429250 GTTGTGCTGGTTACCCAAAACT 59.571 45.455 0.00 0.00 41.27 2.66
269 270 2.741145 TGTGCTGGTTACCCAAAACTT 58.259 42.857 0.00 0.00 41.27 2.66
270 271 3.899726 TGTGCTGGTTACCCAAAACTTA 58.100 40.909 0.00 0.00 41.27 2.24
271 272 4.475345 TGTGCTGGTTACCCAAAACTTAT 58.525 39.130 0.00 0.00 41.27 1.73
272 273 4.896482 TGTGCTGGTTACCCAAAACTTATT 59.104 37.500 0.00 0.00 41.27 1.40
273 274 5.221342 TGTGCTGGTTACCCAAAACTTATTG 60.221 40.000 0.00 0.00 41.27 1.90
274 275 4.896482 TGCTGGTTACCCAAAACTTATTGT 59.104 37.500 0.00 0.00 41.27 2.71
275 276 5.010213 TGCTGGTTACCCAAAACTTATTGTC 59.990 40.000 0.00 0.00 41.27 3.18
276 277 5.243060 GCTGGTTACCCAAAACTTATTGTCT 59.757 40.000 0.00 0.00 41.27 3.41
277 278 6.239204 GCTGGTTACCCAAAACTTATTGTCTT 60.239 38.462 0.00 0.00 41.27 3.01
278 279 7.040271 GCTGGTTACCCAAAACTTATTGTCTTA 60.040 37.037 0.00 0.00 41.27 2.10
279 280 8.168790 TGGTTACCCAAAACTTATTGTCTTAC 57.831 34.615 0.00 0.00 37.98 2.34
280 281 7.778853 TGGTTACCCAAAACTTATTGTCTTACA 59.221 33.333 0.00 0.00 37.98 2.41
281 282 8.294577 GGTTACCCAAAACTTATTGTCTTACAG 58.705 37.037 0.00 0.00 0.00 2.74
282 283 8.843262 GTTACCCAAAACTTATTGTCTTACAGT 58.157 33.333 0.00 0.00 0.00 3.55
283 284 7.506328 ACCCAAAACTTATTGTCTTACAGTC 57.494 36.000 0.00 0.00 0.00 3.51
284 285 7.057894 ACCCAAAACTTATTGTCTTACAGTCA 58.942 34.615 0.00 0.00 0.00 3.41
285 286 7.012989 ACCCAAAACTTATTGTCTTACAGTCAC 59.987 37.037 0.00 0.00 0.00 3.67
286 287 7.360361 CCAAAACTTATTGTCTTACAGTCACC 58.640 38.462 0.00 0.00 0.00 4.02
287 288 7.360361 CAAAACTTATTGTCTTACAGTCACCC 58.640 38.462 0.00 0.00 0.00 4.61
288 289 4.817517 ACTTATTGTCTTACAGTCACCCG 58.182 43.478 0.00 0.00 0.00 5.28
289 290 4.282703 ACTTATTGTCTTACAGTCACCCGT 59.717 41.667 0.00 0.00 0.00 5.28
290 291 5.477984 ACTTATTGTCTTACAGTCACCCGTA 59.522 40.000 0.00 0.00 0.00 4.02
291 292 3.928727 TTGTCTTACAGTCACCCGTAG 57.071 47.619 0.00 0.00 0.00 3.51
292 293 2.867624 TGTCTTACAGTCACCCGTAGT 58.132 47.619 0.00 0.00 0.00 2.73
293 294 3.225104 TGTCTTACAGTCACCCGTAGTT 58.775 45.455 0.00 0.00 0.00 2.24
294 295 3.005050 TGTCTTACAGTCACCCGTAGTTG 59.995 47.826 0.00 0.00 0.00 3.16
295 296 3.005155 GTCTTACAGTCACCCGTAGTTGT 59.995 47.826 0.00 0.00 0.00 3.32
296 297 3.254166 TCTTACAGTCACCCGTAGTTGTC 59.746 47.826 0.00 0.00 0.00 3.18
297 298 1.700955 ACAGTCACCCGTAGTTGTCT 58.299 50.000 0.00 0.00 0.00 3.41
305 306 4.341806 TCACCCGTAGTTGTCTTTGTCTAA 59.658 41.667 0.00 0.00 0.00 2.10
321 322 6.928348 TTGTCTAACTCTGGATAGGAAACA 57.072 37.500 0.00 0.00 0.00 2.83
323 324 6.936279 TGTCTAACTCTGGATAGGAAACAAG 58.064 40.000 0.00 0.00 0.00 3.16
386 389 1.133790 GTCAACTCCATGCCATTGCTC 59.866 52.381 0.00 0.00 38.71 4.26
395 398 2.042831 GCCATTGCTCGAAGCCACT 61.043 57.895 4.73 0.00 41.51 4.00
399 402 2.684881 CCATTGCTCGAAGCCACTATTT 59.315 45.455 4.73 0.00 41.51 1.40
406 409 4.260538 GCTCGAAGCCACTATTTCATCAAG 60.261 45.833 0.00 0.00 34.48 3.02
408 411 5.487433 TCGAAGCCACTATTTCATCAAGAA 58.513 37.500 0.00 0.00 0.00 2.52
409 412 5.582269 TCGAAGCCACTATTTCATCAAGAAG 59.418 40.000 0.00 0.00 37.57 2.85
411 414 3.950395 AGCCACTATTTCATCAAGAAGGC 59.050 43.478 0.00 0.00 37.57 4.35
412 415 3.696051 GCCACTATTTCATCAAGAAGGCA 59.304 43.478 0.00 0.00 37.57 4.75
414 417 5.735354 GCCACTATTTCATCAAGAAGGCATG 60.735 44.000 0.00 0.00 37.57 4.06
415 418 5.279384 CACTATTTCATCAAGAAGGCATGC 58.721 41.667 9.90 9.90 37.57 4.06
416 419 4.951715 ACTATTTCATCAAGAAGGCATGCA 59.048 37.500 21.36 0.00 37.57 3.96
417 420 3.861276 TTTCATCAAGAAGGCATGCAG 57.139 42.857 21.36 1.65 37.57 4.41
418 421 1.758936 TCATCAAGAAGGCATGCAGG 58.241 50.000 21.36 0.00 0.00 4.85
420 423 2.097036 CATCAAGAAGGCATGCAGGAA 58.903 47.619 21.36 0.00 0.00 3.36
421 424 1.538047 TCAAGAAGGCATGCAGGAAC 58.462 50.000 21.36 0.72 0.00 3.62
422 425 1.202915 TCAAGAAGGCATGCAGGAACA 60.203 47.619 21.36 0.00 0.00 3.18
424 427 1.542492 AGAAGGCATGCAGGAACAAG 58.458 50.000 21.36 0.00 0.00 3.16
425 428 0.108945 GAAGGCATGCAGGAACAAGC 60.109 55.000 21.36 0.00 33.62 4.01
427 430 3.368822 GCATGCAGGAACAAGCCA 58.631 55.556 14.21 0.00 0.00 4.75
428 431 1.667151 GCATGCAGGAACAAGCCAA 59.333 52.632 14.21 0.00 0.00 4.52
429 432 0.389426 GCATGCAGGAACAAGCCAAG 60.389 55.000 14.21 0.00 0.00 3.61
431 434 0.178953 ATGCAGGAACAAGCCAAGGT 60.179 50.000 0.00 0.00 0.00 3.50
433 436 1.168714 GCAGGAACAAGCCAAGGTAG 58.831 55.000 0.00 0.00 0.00 3.18
434 437 1.271379 GCAGGAACAAGCCAAGGTAGA 60.271 52.381 0.00 0.00 0.00 2.59
435 438 2.427506 CAGGAACAAGCCAAGGTAGAC 58.572 52.381 0.00 0.00 0.00 2.59
436 439 1.002087 AGGAACAAGCCAAGGTAGACG 59.998 52.381 0.00 0.00 0.00 4.18
437 440 1.001633 GGAACAAGCCAAGGTAGACGA 59.998 52.381 0.00 0.00 0.00 4.20
438 441 2.338500 GAACAAGCCAAGGTAGACGAG 58.662 52.381 0.00 0.00 0.00 4.18
439 442 1.629043 ACAAGCCAAGGTAGACGAGA 58.371 50.000 0.00 0.00 0.00 4.04
440 443 1.968493 ACAAGCCAAGGTAGACGAGAA 59.032 47.619 0.00 0.00 0.00 2.87
441 444 2.028930 ACAAGCCAAGGTAGACGAGAAG 60.029 50.000 0.00 0.00 0.00 2.85
443 446 0.246635 GCCAAGGTAGACGAGAAGCA 59.753 55.000 0.00 0.00 0.00 3.91
554 848 4.083271 GCTTTCAGGCGTAGAAATTCAGTT 60.083 41.667 0.00 0.00 34.75 3.16
583 877 7.758076 CGTCTTAATATATCGGTTGCCTGATTA 59.242 37.037 0.00 0.00 0.00 1.75
726 2210 7.212274 AGACAGGGATTCAAAAATTCAAACAG 58.788 34.615 0.00 0.00 0.00 3.16
748 2232 7.467623 ACAGCTGACAAATATCGAAAAGATTC 58.532 34.615 23.35 0.00 40.66 2.52
858 2502 3.165071 GGTTGGTCAAAGGACATGGAAT 58.835 45.455 0.00 0.00 46.17 3.01
883 2527 1.245376 ACGCCCATTTAAACCCCACG 61.245 55.000 0.00 0.00 0.00 4.94
898 2542 1.002134 CACGCTCCCCACCATTTCT 60.002 57.895 0.00 0.00 0.00 2.52
917 2561 1.940613 CTGGCTCCTTGTAAATACGCC 59.059 52.381 0.00 0.00 36.64 5.68
933 2578 3.411517 CCCGCCTCCATCAACCCT 61.412 66.667 0.00 0.00 0.00 4.34
934 2579 2.124570 CCGCCTCCATCAACCCTG 60.125 66.667 0.00 0.00 0.00 4.45
965 2610 3.077391 TCCAACATTCCTCAAATCCCCTT 59.923 43.478 0.00 0.00 0.00 3.95
1268 2916 3.597728 CGCCGTAGAGGAGGAGGC 61.598 72.222 0.00 0.00 45.00 4.70
1287 2935 4.151582 GCCGCGCCTAAGGTGGTA 62.152 66.667 0.00 0.00 37.38 3.25
1294 2942 0.818040 GCCTAAGGTGGTAATGGCGG 60.818 60.000 0.00 0.00 0.00 6.13
1295 2943 0.818040 CCTAAGGTGGTAATGGCGGC 60.818 60.000 0.00 0.00 0.00 6.53
1394 3047 0.802494 GTGATCGGCGTTTGATGGTT 59.198 50.000 6.85 0.00 0.00 3.67
2074 4213 0.882474 ACGAAGACAACGAGGAGGAG 59.118 55.000 0.00 0.00 34.70 3.69
2075 4214 0.171455 CGAAGACAACGAGGAGGAGG 59.829 60.000 0.00 0.00 0.00 4.30
2076 4215 1.546961 GAAGACAACGAGGAGGAGGA 58.453 55.000 0.00 0.00 0.00 3.71
2254 4393 2.186384 CAGAGGAAGCTGCGGGAG 59.814 66.667 0.00 0.00 0.00 4.30
2430 5301 7.577979 TGACCGAGTTTGTCATTTGTTATTAC 58.422 34.615 0.00 0.00 37.80 1.89
2434 5305 9.755064 CCGAGTTTGTCATTTGTTATTACTAAG 57.245 33.333 0.00 0.00 0.00 2.18
2456 6976 7.647907 AAGTAAGTAGTGGTACGATTTGTTG 57.352 36.000 0.00 0.00 33.97 3.33
2557 7110 4.346734 TCAACTTGTATCGTCTACCGTC 57.653 45.455 0.00 0.00 37.94 4.79
2612 7175 6.313658 AGAAACAAGAAACAAAAATCAGCACC 59.686 34.615 0.00 0.00 0.00 5.01
2668 7415 0.961019 GCAAGACCACTTTGCATGGA 59.039 50.000 11.80 0.00 39.87 3.41
2669 7416 1.340889 GCAAGACCACTTTGCATGGAA 59.659 47.619 11.80 0.00 39.87 3.53
2768 7524 7.657761 AGAAGATACGCATACCTAAATCCTTTG 59.342 37.037 0.00 0.00 0.00 2.77
2827 7583 1.215382 CGACCCATGCTTCACTCGA 59.785 57.895 0.00 0.00 0.00 4.04
2831 7587 2.362397 GACCCATGCTTCACTCGAGATA 59.638 50.000 21.68 3.07 0.00 1.98
2872 7628 3.393609 AGCCCTTATCATCAGCAATCTCA 59.606 43.478 0.00 0.00 0.00 3.27
2898 7654 0.605319 TCCATGAACGCCGCTTTTCT 60.605 50.000 0.00 0.00 0.00 2.52
2917 7673 3.955471 TCTGAATCCTTCCGAAGCAAAT 58.045 40.909 2.27 0.00 0.00 2.32
2932 7688 0.823460 CAAATTGCCCGCTACCCATT 59.177 50.000 0.00 0.00 0.00 3.16
3101 7859 8.918202 TGTCGGCTCCTAAAATAATAATTCAT 57.082 30.769 0.00 0.00 0.00 2.57
3174 7933 3.745975 CGTACAAGGTGCTTGAGAAATCA 59.254 43.478 0.00 0.00 43.42 2.57
3186 7953 8.490355 GTGCTTGAGAAATCACAAATTTTAAGG 58.510 33.333 0.00 0.00 0.00 2.69
3243 8014 7.126733 ACTACTTTCTGTACTCCACCATAGAT 58.873 38.462 0.00 0.00 0.00 1.98
3272 8043 4.592942 TGGTTGAATTCTTGATCCAGGAG 58.407 43.478 7.05 0.00 0.00 3.69
3308 8079 2.573462 ACTTGCACATATCCAGGACAGT 59.427 45.455 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.467438 TGATCTGGAGTTGCTTCTGTGATA 59.533 41.667 0.00 0.00 0.00 2.15
1 2 3.262660 TGATCTGGAGTTGCTTCTGTGAT 59.737 43.478 0.00 0.00 0.00 3.06
2 3 2.634453 TGATCTGGAGTTGCTTCTGTGA 59.366 45.455 0.00 0.00 0.00 3.58
3 4 3.049708 TGATCTGGAGTTGCTTCTGTG 57.950 47.619 0.00 0.00 0.00 3.66
4 5 3.072184 ACTTGATCTGGAGTTGCTTCTGT 59.928 43.478 0.00 0.00 0.00 3.41
5 6 3.672808 ACTTGATCTGGAGTTGCTTCTG 58.327 45.455 0.00 0.00 0.00 3.02
6 7 4.363991 AACTTGATCTGGAGTTGCTTCT 57.636 40.909 8.31 0.00 34.96 2.85
7 8 6.597280 AGATAAACTTGATCTGGAGTTGCTTC 59.403 38.462 9.43 7.66 36.31 3.86
8 9 6.479884 AGATAAACTTGATCTGGAGTTGCTT 58.520 36.000 9.43 0.39 36.31 3.91
9 10 6.059787 AGATAAACTTGATCTGGAGTTGCT 57.940 37.500 9.43 6.26 36.31 3.91
10 11 5.877012 TGAGATAAACTTGATCTGGAGTTGC 59.123 40.000 9.43 4.71 36.31 4.17
11 12 7.986320 AGATGAGATAAACTTGATCTGGAGTTG 59.014 37.037 9.43 0.00 36.31 3.16
12 13 8.088463 AGATGAGATAAACTTGATCTGGAGTT 57.912 34.615 0.00 0.00 37.69 3.01
13 14 7.673641 AGATGAGATAAACTTGATCTGGAGT 57.326 36.000 0.00 0.00 33.71 3.85
14 15 9.695526 CTTAGATGAGATAAACTTGATCTGGAG 57.304 37.037 0.00 0.00 33.71 3.86
15 16 8.646004 CCTTAGATGAGATAAACTTGATCTGGA 58.354 37.037 0.00 0.00 33.71 3.86
16 17 8.646004 TCCTTAGATGAGATAAACTTGATCTGG 58.354 37.037 0.00 0.00 33.71 3.86
21 22 9.823647 GTTGATCCTTAGATGAGATAAACTTGA 57.176 33.333 0.00 0.00 31.27 3.02
22 23 9.829507 AGTTGATCCTTAGATGAGATAAACTTG 57.170 33.333 0.00 0.00 38.14 3.16
24 25 9.829507 CAAGTTGATCCTTAGATGAGATAAACT 57.170 33.333 0.00 0.00 41.51 2.66
25 26 8.555361 GCAAGTTGATCCTTAGATGAGATAAAC 58.445 37.037 7.16 0.00 33.27 2.01
26 27 8.267183 TGCAAGTTGATCCTTAGATGAGATAAA 58.733 33.333 7.16 0.00 30.90 1.40
27 28 7.795047 TGCAAGTTGATCCTTAGATGAGATAA 58.205 34.615 7.16 0.00 30.90 1.75
28 29 7.288621 TCTGCAAGTTGATCCTTAGATGAGATA 59.711 37.037 7.16 0.00 30.25 1.98
29 30 6.099413 TCTGCAAGTTGATCCTTAGATGAGAT 59.901 38.462 7.16 0.00 30.25 2.75
30 31 5.423290 TCTGCAAGTTGATCCTTAGATGAGA 59.577 40.000 7.16 0.00 30.25 3.27
31 32 5.523188 GTCTGCAAGTTGATCCTTAGATGAG 59.477 44.000 7.16 0.00 30.25 2.90
32 33 5.046376 TGTCTGCAAGTTGATCCTTAGATGA 60.046 40.000 7.16 0.00 30.25 2.92
33 34 5.181009 TGTCTGCAAGTTGATCCTTAGATG 58.819 41.667 7.16 0.00 30.25 2.90
34 35 5.426689 TGTCTGCAAGTTGATCCTTAGAT 57.573 39.130 7.16 0.00 32.21 1.98
35 36 4.890158 TGTCTGCAAGTTGATCCTTAGA 57.110 40.909 7.16 0.00 33.76 2.10
36 37 5.426504 AGATGTCTGCAAGTTGATCCTTAG 58.573 41.667 7.16 0.00 33.76 2.18
37 38 5.426689 AGATGTCTGCAAGTTGATCCTTA 57.573 39.130 7.16 0.00 33.76 2.69
38 39 4.298103 AGATGTCTGCAAGTTGATCCTT 57.702 40.909 7.16 0.00 33.76 3.36
39 40 3.996921 AGATGTCTGCAAGTTGATCCT 57.003 42.857 7.16 0.00 33.76 3.24
40 41 4.005650 TGAAGATGTCTGCAAGTTGATCC 58.994 43.478 7.16 0.00 33.76 3.36
41 42 4.694509 AGTGAAGATGTCTGCAAGTTGATC 59.305 41.667 7.16 0.06 32.26 2.92
42 43 4.649692 AGTGAAGATGTCTGCAAGTTGAT 58.350 39.130 7.16 0.00 32.26 2.57
43 44 4.077300 AGTGAAGATGTCTGCAAGTTGA 57.923 40.909 7.16 0.00 32.26 3.18
44 45 5.616424 GCTTAGTGAAGATGTCTGCAAGTTG 60.616 44.000 0.00 0.00 32.26 3.16
45 46 4.453819 GCTTAGTGAAGATGTCTGCAAGTT 59.546 41.667 0.00 0.00 32.26 2.66
46 47 3.999663 GCTTAGTGAAGATGTCTGCAAGT 59.000 43.478 0.00 0.00 32.26 3.16
47 48 3.373439 GGCTTAGTGAAGATGTCTGCAAG 59.627 47.826 0.00 0.00 32.26 4.01
48 49 3.008375 AGGCTTAGTGAAGATGTCTGCAA 59.992 43.478 0.00 0.00 32.26 4.08
49 50 2.568956 AGGCTTAGTGAAGATGTCTGCA 59.431 45.455 0.00 0.00 34.25 4.41
50 51 3.258971 AGGCTTAGTGAAGATGTCTGC 57.741 47.619 0.00 0.00 34.25 4.26
51 52 5.582665 GGTAAAGGCTTAGTGAAGATGTCTG 59.417 44.000 0.00 0.00 34.25 3.51
52 53 5.624738 CGGTAAAGGCTTAGTGAAGATGTCT 60.625 44.000 0.00 0.00 34.25 3.41
53 54 4.567159 CGGTAAAGGCTTAGTGAAGATGTC 59.433 45.833 0.00 0.00 34.25 3.06
54 55 4.504858 CGGTAAAGGCTTAGTGAAGATGT 58.495 43.478 0.00 0.00 34.25 3.06
55 56 3.309954 GCGGTAAAGGCTTAGTGAAGATG 59.690 47.826 0.00 0.00 34.25 2.90
56 57 3.197983 AGCGGTAAAGGCTTAGTGAAGAT 59.802 43.478 0.00 0.00 37.50 2.40
57 58 2.565834 AGCGGTAAAGGCTTAGTGAAGA 59.434 45.455 0.00 0.00 37.50 2.87
58 59 2.673368 CAGCGGTAAAGGCTTAGTGAAG 59.327 50.000 0.00 0.00 39.08 3.02
59 60 2.695359 CAGCGGTAAAGGCTTAGTGAA 58.305 47.619 0.00 0.00 39.08 3.18
60 61 1.674817 GCAGCGGTAAAGGCTTAGTGA 60.675 52.381 0.00 0.00 39.08 3.41
61 62 0.727398 GCAGCGGTAAAGGCTTAGTG 59.273 55.000 0.00 0.00 39.08 2.74
62 63 0.392595 GGCAGCGGTAAAGGCTTAGT 60.393 55.000 0.00 0.00 39.08 2.24
63 64 0.392461 TGGCAGCGGTAAAGGCTTAG 60.392 55.000 0.00 0.00 39.08 2.18
64 65 0.675522 GTGGCAGCGGTAAAGGCTTA 60.676 55.000 0.00 0.00 39.08 3.09
65 66 1.971695 GTGGCAGCGGTAAAGGCTT 60.972 57.895 0.00 0.00 39.08 4.35
66 67 2.359975 GTGGCAGCGGTAAAGGCT 60.360 61.111 0.00 0.00 42.61 4.58
67 68 2.671619 TGTGGCAGCGGTAAAGGC 60.672 61.111 0.00 0.00 0.00 4.35
68 69 0.889186 AACTGTGGCAGCGGTAAAGG 60.889 55.000 0.00 0.00 34.37 3.11
69 70 0.951558 AAACTGTGGCAGCGGTAAAG 59.048 50.000 0.00 0.00 34.37 1.85
70 71 0.665835 CAAACTGTGGCAGCGGTAAA 59.334 50.000 0.00 0.00 34.37 2.01
71 72 0.179043 TCAAACTGTGGCAGCGGTAA 60.179 50.000 0.00 0.00 34.37 2.85
72 73 0.602638 CTCAAACTGTGGCAGCGGTA 60.603 55.000 0.00 0.00 34.37 4.02
73 74 1.893808 CTCAAACTGTGGCAGCGGT 60.894 57.895 0.00 0.00 34.37 5.68
74 75 2.620112 CCTCAAACTGTGGCAGCGG 61.620 63.158 0.00 0.00 34.37 5.52
75 76 2.949106 CCTCAAACTGTGGCAGCG 59.051 61.111 0.00 0.00 34.37 5.18
80 81 2.154462 CCTACAAGCCTCAAACTGTGG 58.846 52.381 0.00 0.00 34.32 4.17
81 82 1.537202 GCCTACAAGCCTCAAACTGTG 59.463 52.381 0.00 0.00 0.00 3.66
82 83 1.878102 CGCCTACAAGCCTCAAACTGT 60.878 52.381 0.00 0.00 0.00 3.55
83 84 0.798776 CGCCTACAAGCCTCAAACTG 59.201 55.000 0.00 0.00 0.00 3.16
84 85 0.955919 GCGCCTACAAGCCTCAAACT 60.956 55.000 0.00 0.00 0.00 2.66
85 86 1.234615 TGCGCCTACAAGCCTCAAAC 61.235 55.000 4.18 0.00 0.00 2.93
86 87 0.536233 TTGCGCCTACAAGCCTCAAA 60.536 50.000 4.18 0.00 0.00 2.69
87 88 0.322456 ATTGCGCCTACAAGCCTCAA 60.322 50.000 4.18 0.00 31.96 3.02
88 89 0.744414 GATTGCGCCTACAAGCCTCA 60.744 55.000 4.18 0.00 31.96 3.86
89 90 0.462759 AGATTGCGCCTACAAGCCTC 60.463 55.000 4.18 0.00 36.61 4.70
90 91 0.035056 AAGATTGCGCCTACAAGCCT 60.035 50.000 4.18 0.00 36.61 4.58
91 92 1.330829 GTAAGATTGCGCCTACAAGCC 59.669 52.381 4.18 0.00 36.61 4.35
92 93 1.330829 GGTAAGATTGCGCCTACAAGC 59.669 52.381 4.18 0.00 36.20 4.01
93 94 1.940613 GGGTAAGATTGCGCCTACAAG 59.059 52.381 4.18 0.00 31.96 3.16
94 95 1.557832 AGGGTAAGATTGCGCCTACAA 59.442 47.619 4.18 0.00 0.00 2.41
95 96 1.200519 AGGGTAAGATTGCGCCTACA 58.799 50.000 4.18 0.00 0.00 2.74
96 97 2.158943 AGAAGGGTAAGATTGCGCCTAC 60.159 50.000 4.18 0.00 0.00 3.18
97 98 2.102588 GAGAAGGGTAAGATTGCGCCTA 59.897 50.000 4.18 0.00 0.00 3.93
98 99 0.912486 AGAAGGGTAAGATTGCGCCT 59.088 50.000 4.18 0.00 0.00 5.52
99 100 1.300481 GAGAAGGGTAAGATTGCGCC 58.700 55.000 4.18 0.00 0.00 6.53
100 101 1.936547 CTGAGAAGGGTAAGATTGCGC 59.063 52.381 0.00 0.00 0.00 6.09
101 102 3.252974 ACTGAGAAGGGTAAGATTGCG 57.747 47.619 0.00 0.00 0.00 4.85
102 103 4.837972 AGAACTGAGAAGGGTAAGATTGC 58.162 43.478 0.00 0.00 0.00 3.56
103 104 8.314751 TCTAAAGAACTGAGAAGGGTAAGATTG 58.685 37.037 0.00 0.00 0.00 2.67
104 105 8.437274 TCTAAAGAACTGAGAAGGGTAAGATT 57.563 34.615 0.00 0.00 0.00 2.40
105 106 8.437274 TTCTAAAGAACTGAGAAGGGTAAGAT 57.563 34.615 0.00 0.00 0.00 2.40
106 107 7.850935 TTCTAAAGAACTGAGAAGGGTAAGA 57.149 36.000 0.00 0.00 0.00 2.10
107 108 8.151596 ACTTTCTAAAGAACTGAGAAGGGTAAG 58.848 37.037 9.37 0.00 39.31 2.34
108 109 7.931948 CACTTTCTAAAGAACTGAGAAGGGTAA 59.068 37.037 9.37 0.00 39.31 2.85
109 110 7.442656 CACTTTCTAAAGAACTGAGAAGGGTA 58.557 38.462 9.37 0.00 39.31 3.69
110 111 6.292150 CACTTTCTAAAGAACTGAGAAGGGT 58.708 40.000 9.37 7.24 39.31 4.34
111 112 5.703130 CCACTTTCTAAAGAACTGAGAAGGG 59.297 44.000 9.37 0.00 39.31 3.95
112 113 5.180304 GCCACTTTCTAAAGAACTGAGAAGG 59.820 44.000 9.37 0.00 39.31 3.46
113 114 5.994668 AGCCACTTTCTAAAGAACTGAGAAG 59.005 40.000 9.37 0.00 39.31 2.85
114 115 5.930135 AGCCACTTTCTAAAGAACTGAGAA 58.070 37.500 9.37 0.00 39.31 2.87
115 116 5.552870 AGCCACTTTCTAAAGAACTGAGA 57.447 39.130 9.37 0.00 39.31 3.27
116 117 7.155328 TCTTAGCCACTTTCTAAAGAACTGAG 58.845 38.462 9.37 8.70 39.31 3.35
117 118 7.062749 TCTTAGCCACTTTCTAAAGAACTGA 57.937 36.000 9.37 0.62 39.31 3.41
118 119 7.913674 ATCTTAGCCACTTTCTAAAGAACTG 57.086 36.000 9.37 0.00 39.31 3.16
119 120 8.157476 TCAATCTTAGCCACTTTCTAAAGAACT 58.843 33.333 9.37 5.87 39.31 3.01
120 121 8.324163 TCAATCTTAGCCACTTTCTAAAGAAC 57.676 34.615 9.37 0.00 39.31 3.01
121 122 7.607991 CCTCAATCTTAGCCACTTTCTAAAGAA 59.392 37.037 9.37 0.00 39.31 2.52
122 123 7.106239 CCTCAATCTTAGCCACTTTCTAAAGA 58.894 38.462 9.37 0.00 39.31 2.52
123 124 6.317391 CCCTCAATCTTAGCCACTTTCTAAAG 59.683 42.308 0.90 0.90 41.73 1.85
124 125 6.012858 TCCCTCAATCTTAGCCACTTTCTAAA 60.013 38.462 0.00 0.00 0.00 1.85
125 126 5.487488 TCCCTCAATCTTAGCCACTTTCTAA 59.513 40.000 0.00 0.00 0.00 2.10
126 127 5.030147 TCCCTCAATCTTAGCCACTTTCTA 58.970 41.667 0.00 0.00 0.00 2.10
127 128 3.846588 TCCCTCAATCTTAGCCACTTTCT 59.153 43.478 0.00 0.00 0.00 2.52
128 129 4.195416 CTCCCTCAATCTTAGCCACTTTC 58.805 47.826 0.00 0.00 0.00 2.62
129 130 3.054065 CCTCCCTCAATCTTAGCCACTTT 60.054 47.826 0.00 0.00 0.00 2.66
130 131 2.507471 CCTCCCTCAATCTTAGCCACTT 59.493 50.000 0.00 0.00 0.00 3.16
131 132 2.122768 CCTCCCTCAATCTTAGCCACT 58.877 52.381 0.00 0.00 0.00 4.00
132 133 1.141858 CCCTCCCTCAATCTTAGCCAC 59.858 57.143 0.00 0.00 0.00 5.01
133 134 1.274416 ACCCTCCCTCAATCTTAGCCA 60.274 52.381 0.00 0.00 0.00 4.75
134 135 1.141858 CACCCTCCCTCAATCTTAGCC 59.858 57.143 0.00 0.00 0.00 3.93
135 136 1.840635 ACACCCTCCCTCAATCTTAGC 59.159 52.381 0.00 0.00 0.00 3.09
136 137 4.962995 TCTAACACCCTCCCTCAATCTTAG 59.037 45.833 0.00 0.00 0.00 2.18
137 138 4.715297 GTCTAACACCCTCCCTCAATCTTA 59.285 45.833 0.00 0.00 0.00 2.10
138 139 3.519913 GTCTAACACCCTCCCTCAATCTT 59.480 47.826 0.00 0.00 0.00 2.40
139 140 3.108376 GTCTAACACCCTCCCTCAATCT 58.892 50.000 0.00 0.00 0.00 2.40
140 141 3.108376 AGTCTAACACCCTCCCTCAATC 58.892 50.000 0.00 0.00 0.00 2.67
141 142 3.207044 AGTCTAACACCCTCCCTCAAT 57.793 47.619 0.00 0.00 0.00 2.57
142 143 2.715763 AGTCTAACACCCTCCCTCAA 57.284 50.000 0.00 0.00 0.00 3.02
143 144 3.012502 ACATAGTCTAACACCCTCCCTCA 59.987 47.826 0.00 0.00 0.00 3.86
144 145 3.644335 ACATAGTCTAACACCCTCCCTC 58.356 50.000 0.00 0.00 0.00 4.30
145 146 3.778622 ACATAGTCTAACACCCTCCCT 57.221 47.619 0.00 0.00 0.00 4.20
146 147 5.185442 GCTATACATAGTCTAACACCCTCCC 59.815 48.000 0.00 0.00 32.96 4.30
147 148 6.011481 AGCTATACATAGTCTAACACCCTCC 58.989 44.000 0.00 0.00 32.96 4.30
148 149 7.449086 AGAAGCTATACATAGTCTAACACCCTC 59.551 40.741 0.00 0.00 32.96 4.30
149 150 7.231722 CAGAAGCTATACATAGTCTAACACCCT 59.768 40.741 0.00 0.00 32.96 4.34
150 151 7.014422 ACAGAAGCTATACATAGTCTAACACCC 59.986 40.741 0.00 0.00 32.96 4.61
151 152 7.942990 ACAGAAGCTATACATAGTCTAACACC 58.057 38.462 0.00 0.00 32.96 4.16
152 153 9.881529 GTACAGAAGCTATACATAGTCTAACAC 57.118 37.037 0.00 0.00 32.96 3.32
153 154 9.064706 GGTACAGAAGCTATACATAGTCTAACA 57.935 37.037 0.00 0.00 32.96 2.41
154 155 9.287373 AGGTACAGAAGCTATACATAGTCTAAC 57.713 37.037 0.00 0.00 32.98 2.34
157 158 9.456147 CATAGGTACAGAAGCTATACATAGTCT 57.544 37.037 0.00 0.00 45.12 3.24
158 159 9.233649 ACATAGGTACAGAAGCTATACATAGTC 57.766 37.037 0.00 0.00 45.12 2.59
215 216 9.744125 AGGGGTGGCTTATCTCATTATATATAA 57.256 33.333 7.62 7.62 0.00 0.98
217 218 9.386122 CTAGGGGTGGCTTATCTCATTATATAT 57.614 37.037 0.00 0.00 0.00 0.86
218 219 8.574853 TCTAGGGGTGGCTTATCTCATTATATA 58.425 37.037 0.00 0.00 0.00 0.86
219 220 7.430844 TCTAGGGGTGGCTTATCTCATTATAT 58.569 38.462 0.00 0.00 0.00 0.86
220 221 6.811574 TCTAGGGGTGGCTTATCTCATTATA 58.188 40.000 0.00 0.00 0.00 0.98
221 222 5.665701 TCTAGGGGTGGCTTATCTCATTAT 58.334 41.667 0.00 0.00 0.00 1.28
222 223 5.087323 CTCTAGGGGTGGCTTATCTCATTA 58.913 45.833 0.00 0.00 0.00 1.90
223 224 3.906846 CTCTAGGGGTGGCTTATCTCATT 59.093 47.826 0.00 0.00 0.00 2.57
224 225 3.515562 CTCTAGGGGTGGCTTATCTCAT 58.484 50.000 0.00 0.00 0.00 2.90
225 226 2.426414 CCTCTAGGGGTGGCTTATCTCA 60.426 54.545 0.00 0.00 0.00 3.27
226 227 2.252714 CCTCTAGGGGTGGCTTATCTC 58.747 57.143 0.00 0.00 0.00 2.75
227 228 2.407340 CCTCTAGGGGTGGCTTATCT 57.593 55.000 0.00 0.00 0.00 1.98
239 240 0.693049 AACCAGCACAACCCTCTAGG 59.307 55.000 0.00 0.00 43.78 3.02
240 241 2.354805 GGTAACCAGCACAACCCTCTAG 60.355 54.545 0.00 0.00 0.00 2.43
241 242 1.626825 GGTAACCAGCACAACCCTCTA 59.373 52.381 0.00 0.00 0.00 2.43
242 243 0.400594 GGTAACCAGCACAACCCTCT 59.599 55.000 0.00 0.00 0.00 3.69
243 244 2.942641 GGTAACCAGCACAACCCTC 58.057 57.895 0.00 0.00 0.00 4.30
256 257 8.843262 ACTGTAAGACAATAAGTTTTGGGTAAC 58.157 33.333 0.00 0.00 37.43 2.50
257 258 8.983702 ACTGTAAGACAATAAGTTTTGGGTAA 57.016 30.769 0.00 0.00 37.43 2.85
258 259 8.212312 TGACTGTAAGACAATAAGTTTTGGGTA 58.788 33.333 0.00 0.00 35.26 3.69
259 260 7.012989 GTGACTGTAAGACAATAAGTTTTGGGT 59.987 37.037 0.00 0.00 40.95 4.51
260 261 7.360361 GTGACTGTAAGACAATAAGTTTTGGG 58.640 38.462 0.00 0.00 40.95 4.12
261 262 7.360361 GGTGACTGTAAGACAATAAGTTTTGG 58.640 38.462 0.00 0.00 40.95 3.28
262 263 7.360361 GGGTGACTGTAAGACAATAAGTTTTG 58.640 38.462 0.00 0.00 40.95 2.44
263 264 6.204108 CGGGTGACTGTAAGACAATAAGTTTT 59.796 38.462 0.00 0.00 40.95 2.43
264 265 5.699458 CGGGTGACTGTAAGACAATAAGTTT 59.301 40.000 0.00 0.00 40.95 2.66
265 266 5.235516 CGGGTGACTGTAAGACAATAAGTT 58.764 41.667 0.00 0.00 40.95 2.66
266 267 4.817517 CGGGTGACTGTAAGACAATAAGT 58.182 43.478 0.00 0.00 40.95 2.24
279 280 2.800544 CAAAGACAACTACGGGTGACTG 59.199 50.000 0.00 0.00 44.60 3.51
280 281 2.433239 ACAAAGACAACTACGGGTGACT 59.567 45.455 0.00 0.00 0.00 3.41
281 282 2.798847 GACAAAGACAACTACGGGTGAC 59.201 50.000 0.00 0.00 0.00 3.67
282 283 2.696707 AGACAAAGACAACTACGGGTGA 59.303 45.455 0.00 0.00 0.00 4.02
283 284 3.107642 AGACAAAGACAACTACGGGTG 57.892 47.619 0.00 0.00 0.00 4.61
284 285 4.343239 AGTTAGACAAAGACAACTACGGGT 59.657 41.667 0.00 0.00 29.67 5.28
285 286 4.879598 AGTTAGACAAAGACAACTACGGG 58.120 43.478 0.00 0.00 29.67 5.28
286 287 5.629849 CAGAGTTAGACAAAGACAACTACGG 59.370 44.000 0.00 0.00 31.57 4.02
287 288 5.629849 CCAGAGTTAGACAAAGACAACTACG 59.370 44.000 0.00 0.00 31.57 3.51
288 289 6.746120 TCCAGAGTTAGACAAAGACAACTAC 58.254 40.000 0.00 0.00 31.57 2.73
289 290 6.971726 TCCAGAGTTAGACAAAGACAACTA 57.028 37.500 0.00 0.00 31.57 2.24
290 291 5.871396 TCCAGAGTTAGACAAAGACAACT 57.129 39.130 0.00 0.00 34.03 3.16
291 292 6.814146 CCTATCCAGAGTTAGACAAAGACAAC 59.186 42.308 0.00 0.00 0.00 3.32
292 293 6.724441 TCCTATCCAGAGTTAGACAAAGACAA 59.276 38.462 0.00 0.00 0.00 3.18
293 294 6.253758 TCCTATCCAGAGTTAGACAAAGACA 58.746 40.000 0.00 0.00 0.00 3.41
294 295 6.777213 TCCTATCCAGAGTTAGACAAAGAC 57.223 41.667 0.00 0.00 0.00 3.01
295 296 7.234782 TGTTTCCTATCCAGAGTTAGACAAAGA 59.765 37.037 0.00 0.00 0.00 2.52
296 297 7.386851 TGTTTCCTATCCAGAGTTAGACAAAG 58.613 38.462 0.00 0.00 0.00 2.77
297 298 7.311092 TGTTTCCTATCCAGAGTTAGACAAA 57.689 36.000 0.00 0.00 0.00 2.83
305 306 2.846827 CCCCTTGTTTCCTATCCAGAGT 59.153 50.000 0.00 0.00 0.00 3.24
358 361 1.612726 GCATGGAGTTGACTCAAGCCT 60.613 52.381 12.76 0.00 44.60 4.58
359 362 0.807496 GCATGGAGTTGACTCAAGCC 59.193 55.000 12.76 0.00 44.60 4.35
370 373 0.035152 TTCGAGCAATGGCATGGAGT 60.035 50.000 5.91 0.00 44.61 3.85
386 389 5.220739 CCTTCTTGATGAAATAGTGGCTTCG 60.221 44.000 0.00 0.00 33.79 3.79
395 398 4.340097 CCTGCATGCCTTCTTGATGAAATA 59.660 41.667 16.68 0.00 33.79 1.40
399 402 1.282738 TCCTGCATGCCTTCTTGATGA 59.717 47.619 16.68 0.00 0.00 2.92
406 409 0.108945 GCTTGTTCCTGCATGCCTTC 60.109 55.000 16.68 1.99 34.65 3.46
408 411 3.690745 GCTTGTTCCTGCATGCCT 58.309 55.556 16.68 0.00 34.65 4.75
411 414 0.245539 CCTTGGCTTGTTCCTGCATG 59.754 55.000 0.00 0.00 0.00 4.06
412 415 0.178953 ACCTTGGCTTGTTCCTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
414 417 1.168714 CTACCTTGGCTTGTTCCTGC 58.831 55.000 0.00 0.00 0.00 4.85
415 418 2.427506 GTCTACCTTGGCTTGTTCCTG 58.572 52.381 0.00 0.00 0.00 3.86
416 419 1.002087 CGTCTACCTTGGCTTGTTCCT 59.998 52.381 0.00 0.00 0.00 3.36
417 420 1.001633 TCGTCTACCTTGGCTTGTTCC 59.998 52.381 0.00 0.00 0.00 3.62
418 421 2.029290 TCTCGTCTACCTTGGCTTGTTC 60.029 50.000 0.00 0.00 0.00 3.18
420 423 1.629043 TCTCGTCTACCTTGGCTTGT 58.371 50.000 0.00 0.00 0.00 3.16
421 424 2.611518 CTTCTCGTCTACCTTGGCTTG 58.388 52.381 0.00 0.00 0.00 4.01
422 425 1.066787 GCTTCTCGTCTACCTTGGCTT 60.067 52.381 0.00 0.00 0.00 4.35
424 427 0.246635 TGCTTCTCGTCTACCTTGGC 59.753 55.000 0.00 0.00 0.00 4.52
425 428 1.404315 GGTGCTTCTCGTCTACCTTGG 60.404 57.143 0.00 0.00 0.00 3.61
427 430 1.546476 CTGGTGCTTCTCGTCTACCTT 59.454 52.381 0.00 0.00 32.68 3.50
428 431 1.178276 CTGGTGCTTCTCGTCTACCT 58.822 55.000 0.00 0.00 32.68 3.08
429 432 0.889306 ACTGGTGCTTCTCGTCTACC 59.111 55.000 0.00 0.00 0.00 3.18
431 434 1.905637 TGACTGGTGCTTCTCGTCTA 58.094 50.000 0.00 0.00 0.00 2.59
433 436 1.140816 GTTGACTGGTGCTTCTCGTC 58.859 55.000 0.00 0.00 0.00 4.20
434 437 0.753262 AGTTGACTGGTGCTTCTCGT 59.247 50.000 0.00 0.00 0.00 4.18
435 438 1.528586 CAAGTTGACTGGTGCTTCTCG 59.471 52.381 0.00 0.00 0.00 4.04
436 439 1.265365 GCAAGTTGACTGGTGCTTCTC 59.735 52.381 7.16 0.00 34.13 2.87
437 440 1.133976 AGCAAGTTGACTGGTGCTTCT 60.134 47.619 7.16 0.00 44.79 2.85
438 441 1.312815 AGCAAGTTGACTGGTGCTTC 58.687 50.000 7.16 0.00 44.79 3.86
439 442 3.502164 AGCAAGTTGACTGGTGCTT 57.498 47.368 7.16 0.00 44.79 3.91
441 444 0.040958 CGAAGCAAGTTGACTGGTGC 60.041 55.000 7.16 0.63 37.26 5.01
481 774 7.372451 TCTCGTGTCCAATTTTATTCGAATT 57.628 32.000 17.19 0.00 0.00 2.17
554 848 5.010314 AGGCAACCGATATATTAAGACGTCA 59.990 40.000 19.50 0.00 37.17 4.35
748 2232 9.427127 GAGTATACTAGTAGTAACGTTTTTCCG 57.573 37.037 13.92 0.00 33.89 4.30
858 2502 3.006644 GGGGTTTAAATGGGCGTTAAACA 59.993 43.478 21.24 0.00 46.33 2.83
883 2527 2.054453 GCCAGAAATGGTGGGGAGC 61.054 63.158 0.00 0.00 35.39 4.70
898 2542 1.407712 GGGCGTATTTACAAGGAGCCA 60.408 52.381 5.91 0.00 44.40 4.75
900 2544 0.935196 CGGGCGTATTTACAAGGAGC 59.065 55.000 0.00 0.00 0.00 4.70
907 2551 0.250166 ATGGAGGCGGGCGTATTTAC 60.250 55.000 0.00 0.00 0.00 2.01
917 2561 2.124570 CAGGGTTGATGGAGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
939 2584 3.696548 GGATTTGAGGAATGTTGGAGGAC 59.303 47.826 0.00 0.00 0.00 3.85
956 2601 1.616091 CGGCAATGGCAAGGGGATTT 61.616 55.000 7.75 0.00 43.71 2.17
1287 2935 1.470996 TTTCTTGCTTGGCCGCCATT 61.471 50.000 14.30 0.00 31.53 3.16
1294 2942 1.322442 ACCTCTGTTTCTTGCTTGGC 58.678 50.000 0.00 0.00 0.00 4.52
1295 2943 2.031682 CGAACCTCTGTTTCTTGCTTGG 60.032 50.000 0.00 0.00 33.97 3.61
1416 3069 3.256879 TCATCCCTGCGCAAACAATTAAA 59.743 39.130 13.05 0.00 0.00 1.52
1831 3749 2.202932 CACGCATTCCTCCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
1904 4035 1.620822 GTCAAATTGGCACAGAGGGT 58.379 50.000 0.00 0.00 42.39 4.34
1906 4037 0.109597 GCGTCAAATTGGCACAGAGG 60.110 55.000 0.00 0.00 42.39 3.69
1993 4132 1.896660 GTGGACGCAAGCAAGGGAA 60.897 57.895 0.00 0.00 45.62 3.97
2074 4213 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2075 4214 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
2076 4215 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
2254 4393 2.507324 GACACCTCGCGCTCCTTC 60.507 66.667 5.56 0.00 0.00 3.46
2399 5270 3.254470 TGACAAACTCGGTCAACTCAA 57.746 42.857 0.00 0.00 41.96 3.02
2430 5301 8.857216 CAACAAATCGTACCACTACTTACTTAG 58.143 37.037 0.00 0.00 0.00 2.18
2434 5305 7.086376 TCTCAACAAATCGTACCACTACTTAC 58.914 38.462 0.00 0.00 0.00 2.34
2435 5306 7.218228 TCTCAACAAATCGTACCACTACTTA 57.782 36.000 0.00 0.00 0.00 2.24
2436 5307 6.092955 TCTCAACAAATCGTACCACTACTT 57.907 37.500 0.00 0.00 0.00 2.24
2437 5308 5.717078 TCTCAACAAATCGTACCACTACT 57.283 39.130 0.00 0.00 0.00 2.57
2438 5309 6.154445 TCTTCTCAACAAATCGTACCACTAC 58.846 40.000 0.00 0.00 0.00 2.73
2443 5314 6.780706 TCTTTCTTCTCAACAAATCGTACC 57.219 37.500 0.00 0.00 0.00 3.34
2456 6976 4.195225 ACGGTCATCCTTCTTTCTTCTC 57.805 45.455 0.00 0.00 0.00 2.87
2612 7175 4.779987 TCGTATATCATCGACTTCCGTTG 58.220 43.478 0.00 0.00 38.84 4.10
2668 7415 7.361799 GGGCTCGACAAGTTAATAAAACAGATT 60.362 37.037 0.00 0.00 0.00 2.40
2669 7416 6.093633 GGGCTCGACAAGTTAATAAAACAGAT 59.906 38.462 0.00 0.00 0.00 2.90
2768 7524 2.031683 CCGCCGATGGATTTGAAGTTAC 59.968 50.000 0.00 0.00 0.00 2.50
2827 7583 3.326880 GGTTTGTGACCCCGGATATATCT 59.673 47.826 0.73 0.00 43.06 1.98
2898 7654 3.367292 GCAATTTGCTTCGGAAGGATTCA 60.367 43.478 18.73 5.86 43.57 2.57
2917 7673 2.347322 GCAAATGGGTAGCGGGCAA 61.347 57.895 0.00 0.00 0.00 4.52
2932 7688 1.298157 CCGCATCAAACTCTCCGCAA 61.298 55.000 0.00 0.00 0.00 4.85
3213 7984 5.163774 GGTGGAGTACAGAAAGTAGTAGACG 60.164 48.000 0.00 0.00 36.50 4.18
3243 8014 6.158520 TGGATCAAGAATTCAACCATCCTCTA 59.841 38.462 18.88 4.74 0.00 2.43
3256 8027 3.012518 CGTTGCTCCTGGATCAAGAATT 58.987 45.455 12.93 0.00 0.00 2.17
3272 8043 0.248458 CAAGTCCACCACAACGTTGC 60.248 55.000 27.61 9.79 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.