Multiple sequence alignment - TraesCS6B01G389700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G389700 chr6B 100.000 3472 0 0 1 3472 664383978 664380507 0 6412
1 TraesCS6B01G389700 chr2A 84.244 1428 167 26 1 1414 36902271 36903654 0 1338
2 TraesCS6B01G389700 chr2A 84.081 1426 171 23 1 1414 705954505 705955886 0 1325
3 TraesCS6B01G389700 chr2A 89.106 817 86 3 2658 3472 705957395 705958210 0 1013
4 TraesCS6B01G389700 chr2A 82.200 1191 174 25 1441 2620 705956109 705957272 0 990
5 TraesCS6B01G389700 chr2A 88.372 817 86 6 2658 3472 36905148 36905957 0 974
6 TraesCS6B01G389700 chr2A 82.216 1164 168 27 1467 2620 36903892 36905026 0 966
7 TraesCS6B01G389700 chr6A 83.754 1428 175 33 1 1414 60405029 60406413 0 1299
8 TraesCS6B01G389700 chr6A 89.596 817 82 3 2658 3472 60407921 60408736 0 1035
9 TraesCS6B01G389700 chr6A 82.338 1189 175 22 1441 2620 60406636 60407798 0 1000
10 TraesCS6B01G389700 chr7A 83.683 1428 174 26 1 1414 419035366 419033984 0 1291
11 TraesCS6B01G389700 chr7A 89.435 814 83 3 2661 3472 419032473 419031661 0 1024
12 TraesCS6B01G389700 chr7A 81.749 1189 182 22 1441 2620 419033761 419032599 0 961


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G389700 chr6B 664380507 664383978 3471 True 6412.000000 6412 100.000000 1 3472 1 chr6B.!!$R1 3471
1 TraesCS6B01G389700 chr2A 705954505 705958210 3705 False 1109.333333 1325 85.129000 1 3472 3 chr2A.!!$F2 3471
2 TraesCS6B01G389700 chr2A 36902271 36905957 3686 False 1092.666667 1338 84.944000 1 3472 3 chr2A.!!$F1 3471
3 TraesCS6B01G389700 chr6A 60405029 60408736 3707 False 1111.333333 1299 85.229333 1 3472 3 chr6A.!!$F1 3471
4 TraesCS6B01G389700 chr7A 419031661 419035366 3705 True 1092.000000 1291 84.955667 1 3472 3 chr7A.!!$R1 3471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 763 0.110678 TCCCGTTTGCCCATGTGTTA 59.889 50.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2649 2881 0.034767 ATGGGGTGTGAGTGCATCTG 60.035 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.330998 TCTCACACTCTCCTCTGAACCTA 59.669 47.826 0.00 0.00 0.00 3.08
42 43 7.001674 ACACTCTCCTCTGAACCTATACATAG 58.998 42.308 0.00 0.00 0.00 2.23
75 76 8.907885 AGAAACAAGAGCAAAAGAATCTTTAGT 58.092 29.630 8.83 0.00 30.99 2.24
80 81 8.348507 CAAGAGCAAAAGAATCTTTAGTCAGTT 58.651 33.333 8.83 0.00 30.99 3.16
81 82 7.869800 AGAGCAAAAGAATCTTTAGTCAGTTG 58.130 34.615 8.83 3.10 0.00 3.16
109 110 6.690194 ACTGAATGGAATCTGCTACATTTC 57.310 37.500 0.00 0.00 34.01 2.17
110 111 6.421485 ACTGAATGGAATCTGCTACATTTCT 58.579 36.000 0.00 0.00 34.01 2.52
115 116 7.951347 ATGGAATCTGCTACATTTCTTCTTT 57.049 32.000 0.00 0.00 0.00 2.52
119 120 7.967303 GGAATCTGCTACATTTCTTCTTTTCTG 59.033 37.037 0.00 0.00 0.00 3.02
120 121 6.246420 TCTGCTACATTTCTTCTTTTCTGC 57.754 37.500 0.00 0.00 0.00 4.26
123 124 6.985117 TGCTACATTTCTTCTTTTCTGCATT 58.015 32.000 0.00 0.00 0.00 3.56
143 144 5.163550 GCATTTTCTTACCCCATAGTTCACC 60.164 44.000 0.00 0.00 0.00 4.02
160 161 2.300152 TCACCCAGCTGAAGTAGAACTG 59.700 50.000 17.39 0.00 0.00 3.16
161 162 2.300152 CACCCAGCTGAAGTAGAACTGA 59.700 50.000 17.39 0.00 0.00 3.41
176 177 3.002583 TGATCCTGCCTCGCCACA 61.003 61.111 0.00 0.00 0.00 4.17
182 183 4.383861 TGCCTCGCCACAGCAGAG 62.384 66.667 0.00 0.00 39.83 3.35
228 229 2.182014 CGCGTTCACATCGAAGTATCA 58.818 47.619 0.00 0.00 33.09 2.15
234 235 6.198403 GCGTTCACATCGAAGTATCAGATTTA 59.802 38.462 0.00 0.00 33.09 1.40
237 238 8.869897 GTTCACATCGAAGTATCAGATTTACAA 58.130 33.333 0.00 0.00 33.09 2.41
239 240 9.034544 TCACATCGAAGTATCAGATTTACAATG 57.965 33.333 0.00 0.00 0.00 2.82
251 252 8.044060 TCAGATTTACAATGGACATGTTCTTC 57.956 34.615 5.55 0.00 32.27 2.87
254 255 9.739276 AGATTTACAATGGACATGTTCTTCTAA 57.261 29.630 5.55 0.00 32.27 2.10
255 256 9.994432 GATTTACAATGGACATGTTCTTCTAAG 57.006 33.333 5.55 0.00 32.27 2.18
256 257 8.918202 TTTACAATGGACATGTTCTTCTAAGT 57.082 30.769 5.55 0.17 32.27 2.24
257 258 8.918202 TTACAATGGACATGTTCTTCTAAGTT 57.082 30.769 5.55 0.00 32.27 2.66
260 261 9.520515 ACAATGGACATGTTCTTCTAAGTTATT 57.479 29.630 5.55 0.00 0.00 1.40
286 291 3.996150 ATTGCAGAAGAAGTGTTGTGG 57.004 42.857 0.00 0.00 0.00 4.17
290 295 2.032178 GCAGAAGAAGTGTTGTGGTGAC 59.968 50.000 0.00 0.00 0.00 3.67
294 299 2.906354 AGAAGTGTTGTGGTGACTCAC 58.094 47.619 0.00 0.00 38.09 3.51
319 324 5.386958 TCCATTCCACTCGTATGTATAGC 57.613 43.478 0.00 0.00 0.00 2.97
323 328 3.154710 TCCACTCGTATGTATAGCCCTG 58.845 50.000 0.00 0.00 0.00 4.45
325 330 2.891580 CACTCGTATGTATAGCCCTGGT 59.108 50.000 0.00 0.00 0.00 4.00
329 334 6.376299 CACTCGTATGTATAGCCCTGGTATTA 59.624 42.308 0.00 0.00 0.00 0.98
341 346 4.827284 GCCCTGGTATTAATTGTATGCAGT 59.173 41.667 0.00 0.00 0.00 4.40
345 350 9.733556 CCCTGGTATTAATTGTATGCAGTTATA 57.266 33.333 0.00 0.00 29.05 0.98
364 369 8.139350 CAGTTATATCGAACCAACCATAGTACA 58.861 37.037 0.00 0.00 0.00 2.90
368 373 5.918426 TCGAACCAACCATAGTACACATA 57.082 39.130 0.00 0.00 0.00 2.29
377 382 4.160814 ACCATAGTACACATACTTTCGGCA 59.839 41.667 0.00 0.00 41.99 5.69
382 387 2.968675 ACACATACTTTCGGCACTACC 58.031 47.619 0.00 0.00 0.00 3.18
399 404 2.266055 CGAAGGGGGCAGTGTCTC 59.734 66.667 0.00 0.00 0.00 3.36
401 406 2.526873 AAGGGGGCAGTGTCTCGT 60.527 61.111 0.00 0.00 0.00 4.18
405 410 2.047179 GGGCAGTGTCTCGTTCCC 60.047 66.667 0.00 0.00 0.00 3.97
468 473 7.396190 GTCAAATCGACCTTATCTCATGTAC 57.604 40.000 0.00 0.00 38.85 2.90
469 474 6.421202 GTCAAATCGACCTTATCTCATGTACC 59.579 42.308 0.00 0.00 38.85 3.34
470 475 4.768130 ATCGACCTTATCTCATGTACCG 57.232 45.455 0.00 0.00 0.00 4.02
471 476 3.548770 TCGACCTTATCTCATGTACCGT 58.451 45.455 0.00 0.00 0.00 4.83
472 477 3.562973 TCGACCTTATCTCATGTACCGTC 59.437 47.826 0.00 0.00 0.00 4.79
473 478 3.606384 CGACCTTATCTCATGTACCGTCG 60.606 52.174 0.00 0.00 35.27 5.12
474 479 3.285484 ACCTTATCTCATGTACCGTCGT 58.715 45.455 0.00 0.00 0.00 4.34
475 480 4.454678 ACCTTATCTCATGTACCGTCGTA 58.545 43.478 0.00 0.00 0.00 3.43
476 481 4.274459 ACCTTATCTCATGTACCGTCGTAC 59.726 45.833 0.00 0.00 44.44 3.67
477 482 4.514441 CCTTATCTCATGTACCGTCGTACT 59.486 45.833 0.00 0.00 44.48 2.73
478 483 3.965292 ATCTCATGTACCGTCGTACTG 57.035 47.619 0.00 1.28 44.48 2.74
481 486 2.610833 CTCATGTACCGTCGTACTGCTA 59.389 50.000 0.00 0.00 44.48 3.49
486 491 1.747709 ACCGTCGTACTGCTACATCT 58.252 50.000 0.00 0.00 0.00 2.90
492 497 4.201494 CGTCGTACTGCTACATCTTTGTTG 60.201 45.833 0.00 0.00 37.28 3.33
509 514 1.067295 TTGGAGAGGAGTGCATGGTT 58.933 50.000 0.00 0.00 0.00 3.67
510 515 0.615331 TGGAGAGGAGTGCATGGTTC 59.385 55.000 0.00 0.00 0.00 3.62
512 517 1.003580 GGAGAGGAGTGCATGGTTCAA 59.996 52.381 0.00 0.00 0.00 2.69
515 520 2.040813 AGAGGAGTGCATGGTTCAATGT 59.959 45.455 0.00 0.00 0.00 2.71
516 521 2.163010 GAGGAGTGCATGGTTCAATGTG 59.837 50.000 0.00 0.00 0.00 3.21
517 522 2.161855 GGAGTGCATGGTTCAATGTGA 58.838 47.619 0.00 0.00 0.00 3.58
518 523 2.756760 GGAGTGCATGGTTCAATGTGAT 59.243 45.455 0.00 0.00 0.00 3.06
519 524 3.947196 GGAGTGCATGGTTCAATGTGATA 59.053 43.478 0.00 0.00 0.00 2.15
554 559 0.533755 AGCTGCACAACACTCTGGAC 60.534 55.000 1.02 0.00 0.00 4.02
557 562 0.815213 TGCACAACACTCTGGACAGC 60.815 55.000 0.00 0.00 0.00 4.40
559 564 1.667236 CACAACACTCTGGACAGCAA 58.333 50.000 0.00 0.00 0.00 3.91
590 595 0.321210 CATGGCGTTGTACCACTCCA 60.321 55.000 10.88 10.88 40.82 3.86
597 602 3.834610 CGTTGTACCACTCCACTCTAAG 58.165 50.000 0.00 0.00 0.00 2.18
598 603 3.367087 CGTTGTACCACTCCACTCTAAGG 60.367 52.174 0.00 0.00 0.00 2.69
608 613 2.171237 TCCACTCTAAGGGATGCATGTG 59.829 50.000 2.46 2.99 0.00 3.21
615 620 6.554982 ACTCTAAGGGATGCATGTGTTCTATA 59.445 38.462 2.46 0.00 0.00 1.31
632 637 9.946165 GTGTTCTATAATTTTAATACTGCCACC 57.054 33.333 0.00 0.00 0.00 4.61
640 645 1.972588 AATACTGCCACCTTCCCTCT 58.027 50.000 0.00 0.00 0.00 3.69
643 648 1.197430 ACTGCCACCTTCCCTCTCTG 61.197 60.000 0.00 0.00 0.00 3.35
647 652 1.871418 CCACCTTCCCTCTCTGATCA 58.129 55.000 0.00 0.00 0.00 2.92
654 659 3.411454 TCCCTCTCTGATCAACTCCAT 57.589 47.619 0.00 0.00 0.00 3.41
656 661 2.485124 CCCTCTCTGATCAACTCCATGC 60.485 54.545 0.00 0.00 0.00 4.06
660 665 2.879026 CTCTGATCAACTCCATGCCATG 59.121 50.000 0.00 0.00 0.00 3.66
668 674 0.395311 CTCCATGCCATGCACTCCTT 60.395 55.000 0.00 0.00 43.04 3.36
671 677 1.404986 CCATGCCATGCACTCCTTTTG 60.405 52.381 0.00 0.00 43.04 2.44
679 685 3.988379 TGCACTCCTTTTGACATGAAC 57.012 42.857 0.00 0.00 0.00 3.18
692 698 5.605564 TGACATGAACTGGTTAATCAACG 57.394 39.130 0.00 0.00 35.34 4.10
704 713 2.442236 AATCAACGCTCCATTGGGAT 57.558 45.000 2.09 0.00 43.91 3.85
705 714 1.972872 ATCAACGCTCCATTGGGATC 58.027 50.000 2.09 0.00 43.91 3.36
708 717 2.203056 CGCTCCATTGGGATCGCA 60.203 61.111 8.63 8.63 44.74 5.10
713 722 2.821969 GCTCCATTGGGATCGCATTAAT 59.178 45.455 13.85 1.31 43.91 1.40
715 724 4.074259 CTCCATTGGGATCGCATTAATCA 58.926 43.478 13.85 0.00 43.91 2.57
720 729 1.455786 GGGATCGCATTAATCACGTCG 59.544 52.381 4.64 0.00 0.00 5.12
723 732 3.732219 GGATCGCATTAATCACGTCGTTA 59.268 43.478 0.00 0.00 0.00 3.18
724 733 4.384846 GGATCGCATTAATCACGTCGTTAT 59.615 41.667 0.00 0.00 0.00 1.89
725 734 5.570206 GGATCGCATTAATCACGTCGTTATA 59.430 40.000 0.00 0.00 0.00 0.98
729 738 8.099746 TCGCATTAATCACGTCGTTATATATG 57.900 34.615 0.00 2.72 0.00 1.78
731 740 7.834591 CGCATTAATCACGTCGTTATATATGTG 59.165 37.037 0.00 4.40 34.57 3.21
736 745 8.897457 AATCACGTCGTTATATATGTGAGATC 57.103 34.615 0.00 0.00 43.01 2.75
738 747 6.028368 CACGTCGTTATATATGTGAGATCCC 58.972 44.000 0.00 0.00 35.11 3.85
747 756 1.002624 GTGAGATCCCGTTTGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
748 757 0.394352 GTGAGATCCCGTTTGCCCAT 60.394 55.000 0.00 0.00 0.00 4.00
749 758 0.394216 TGAGATCCCGTTTGCCCATG 60.394 55.000 0.00 0.00 0.00 3.66
751 760 0.680921 AGATCCCGTTTGCCCATGTG 60.681 55.000 0.00 0.00 0.00 3.21
753 762 0.541764 ATCCCGTTTGCCCATGTGTT 60.542 50.000 0.00 0.00 0.00 3.32
754 763 0.110678 TCCCGTTTGCCCATGTGTTA 59.889 50.000 0.00 0.00 0.00 2.41
755 764 0.242555 CCCGTTTGCCCATGTGTTAC 59.757 55.000 0.00 0.00 0.00 2.50
756 765 0.955178 CCGTTTGCCCATGTGTTACA 59.045 50.000 0.00 0.00 0.00 2.41
757 766 1.543802 CCGTTTGCCCATGTGTTACAT 59.456 47.619 0.00 0.00 39.91 2.29
758 767 2.415357 CCGTTTGCCCATGTGTTACATC 60.415 50.000 0.00 0.00 36.53 3.06
759 768 2.227626 CGTTTGCCCATGTGTTACATCA 59.772 45.455 0.00 0.00 36.53 3.07
760 769 3.304996 CGTTTGCCCATGTGTTACATCAA 60.305 43.478 0.00 0.00 36.53 2.57
761 770 4.626042 GTTTGCCCATGTGTTACATCAAA 58.374 39.130 0.00 0.00 36.53 2.69
762 771 4.944619 TTGCCCATGTGTTACATCAAAA 57.055 36.364 0.00 0.00 36.53 2.44
763 772 5.480642 TTGCCCATGTGTTACATCAAAAT 57.519 34.783 0.00 0.00 36.53 1.82
764 773 6.596309 TTGCCCATGTGTTACATCAAAATA 57.404 33.333 0.00 0.00 36.53 1.40
765 774 5.960113 TGCCCATGTGTTACATCAAAATAC 58.040 37.500 0.00 0.00 36.53 1.89
766 775 5.478332 TGCCCATGTGTTACATCAAAATACA 59.522 36.000 0.00 0.00 36.53 2.29
767 776 6.154192 TGCCCATGTGTTACATCAAAATACAT 59.846 34.615 0.00 0.00 36.53 2.29
768 777 7.340487 TGCCCATGTGTTACATCAAAATACATA 59.660 33.333 0.00 0.00 36.53 2.29
769 778 8.194104 GCCCATGTGTTACATCAAAATACATAA 58.806 33.333 0.00 0.00 36.53 1.90
770 779 9.734620 CCCATGTGTTACATCAAAATACATAAG 57.265 33.333 0.00 0.00 36.53 1.73
771 780 9.734620 CCATGTGTTACATCAAAATACATAAGG 57.265 33.333 0.00 0.00 36.53 2.69
772 781 9.734620 CATGTGTTACATCAAAATACATAAGGG 57.265 33.333 0.00 0.00 36.53 3.95
776 785 8.629158 TGTTACATCAAAATACATAAGGGCATC 58.371 33.333 0.00 0.00 0.00 3.91
790 801 3.771216 AGGGCATCTCAACACTGAAAAT 58.229 40.909 0.00 0.00 0.00 1.82
791 802 3.760684 AGGGCATCTCAACACTGAAAATC 59.239 43.478 0.00 0.00 0.00 2.17
793 804 4.022068 GGGCATCTCAACACTGAAAATCAA 60.022 41.667 0.00 0.00 0.00 2.57
794 805 5.509501 GGGCATCTCAACACTGAAAATCAAA 60.510 40.000 0.00 0.00 0.00 2.69
795 806 6.161381 GGCATCTCAACACTGAAAATCAAAT 58.839 36.000 0.00 0.00 0.00 2.32
796 807 6.309737 GGCATCTCAACACTGAAAATCAAATC 59.690 38.462 0.00 0.00 0.00 2.17
797 808 6.309737 GCATCTCAACACTGAAAATCAAATCC 59.690 38.462 0.00 0.00 0.00 3.01
798 809 6.331369 TCTCAACACTGAAAATCAAATCCC 57.669 37.500 0.00 0.00 0.00 3.85
799 810 5.832595 TCTCAACACTGAAAATCAAATCCCA 59.167 36.000 0.00 0.00 0.00 4.37
800 811 5.841810 TCAACACTGAAAATCAAATCCCAC 58.158 37.500 0.00 0.00 0.00 4.61
803 814 6.089249 ACACTGAAAATCAAATCCCACTTC 57.911 37.500 0.00 0.00 0.00 3.01
814 825 1.437397 TCCCACTTCCCTTAACCGTT 58.563 50.000 0.00 0.00 0.00 4.44
816 827 2.156917 CCCACTTCCCTTAACCGTTTC 58.843 52.381 0.00 0.00 0.00 2.78
822 833 2.271777 TCCCTTAACCGTTTCTCCCAT 58.728 47.619 0.00 0.00 0.00 4.00
826 837 4.076394 CCTTAACCGTTTCTCCCATTGAA 58.924 43.478 0.00 0.00 0.00 2.69
840 853 6.816140 TCTCCCATTGAAAAACAAGTCAAAAC 59.184 34.615 0.00 0.00 42.02 2.43
842 855 6.593382 TCCCATTGAAAAACAAGTCAAAACAG 59.407 34.615 0.00 0.00 42.02 3.16
843 856 6.593382 CCCATTGAAAAACAAGTCAAAACAGA 59.407 34.615 0.00 0.00 42.02 3.41
844 857 7.280652 CCCATTGAAAAACAAGTCAAAACAGAT 59.719 33.333 0.00 0.00 42.02 2.90
851 864 6.833342 AACAAGTCAAAACAGATTGCATTC 57.167 33.333 0.16 0.16 0.00 2.67
852 865 4.977963 ACAAGTCAAAACAGATTGCATTCG 59.022 37.500 3.08 1.85 0.00 3.34
874 887 2.981859 TTCAGATAACGCCTCCCTTC 57.018 50.000 0.00 0.00 0.00 3.46
882 895 2.435693 CGCCTCCCTTCGATCCCTT 61.436 63.158 0.00 0.00 0.00 3.95
925 938 7.491682 ACATGTCAAATCAACTTAAACTGCTT 58.508 30.769 0.00 0.00 0.00 3.91
927 940 6.198687 TGTCAAATCAACTTAAACTGCTTCG 58.801 36.000 0.00 0.00 0.00 3.79
928 941 6.183360 TGTCAAATCAACTTAAACTGCTTCGT 60.183 34.615 0.00 0.00 0.00 3.85
936 949 2.763249 AAACTGCTTCGTTGCTTGAG 57.237 45.000 4.36 0.00 0.00 3.02
946 959 4.560136 TCGTTGCTTGAGCTCTCTATAG 57.440 45.455 16.19 5.75 42.66 1.31
986 999 8.871125 AGTTGTATATAACTCAACCATCCCTAG 58.129 37.037 8.92 0.00 41.27 3.02
988 1001 5.763876 ATATAACTCAACCATCCCTAGCC 57.236 43.478 0.00 0.00 0.00 3.93
1001 1014 1.481871 CCTAGCCCGTTCTCCTACAA 58.518 55.000 0.00 0.00 0.00 2.41
1015 1030 2.159296 TCCTACAACGACGTCATGGATG 60.159 50.000 17.16 7.82 0.00 3.51
1028 1043 3.849953 GGATGACAACGCCGACGC 61.850 66.667 0.00 0.00 45.53 5.19
1053 1068 2.125512 GCTCTGTTCACCGGCGAT 60.126 61.111 9.30 0.00 0.00 4.58
1080 1095 3.423154 GTTTCCCCAGCACGCTCG 61.423 66.667 0.00 0.00 0.00 5.03
1098 1113 2.913578 ACTGCCACCACCGTCGTA 60.914 61.111 0.00 0.00 0.00 3.43
1117 1132 1.298340 CCCGTGAGTATTGCCACCA 59.702 57.895 0.00 0.00 0.00 4.17
1142 1157 5.291971 CCTTTGCTTTTGAACTAGCATTGT 58.708 37.500 2.52 0.00 45.92 2.71
1144 1159 7.092716 CCTTTGCTTTTGAACTAGCATTGTAT 58.907 34.615 2.52 0.00 45.92 2.29
1154 1169 9.734620 TTGAACTAGCATTGTATAATTCATTGC 57.265 29.630 0.00 4.99 40.31 3.56
1170 1185 8.546597 AATTCATTGCTATTTTGTTAACCCAC 57.453 30.769 2.48 0.00 0.00 4.61
1206 1221 0.249784 CATCCATCCACTCTCAGGCG 60.250 60.000 0.00 0.00 0.00 5.52
1216 1231 3.119291 CACTCTCAGGCGTATGACAATC 58.881 50.000 0.00 0.00 0.00 2.67
1223 1238 1.268234 GGCGTATGACAATCAAGCAGC 60.268 52.381 0.00 0.00 30.65 5.25
1258 1273 2.894126 CCTGGAGGACATAGAGCGTTAT 59.106 50.000 0.00 0.00 37.39 1.89
1264 1279 5.419471 GGAGGACATAGAGCGTTATCCTATT 59.581 44.000 0.00 0.00 36.70 1.73
1274 1289 6.096423 AGAGCGTTATCCTATTGTAGTTGACA 59.904 38.462 0.00 0.00 35.78 3.58
1285 1300 2.292569 TGTAGTTGACAGAGACACCGTC 59.707 50.000 0.00 0.00 32.86 4.79
1317 1332 9.935241 AGTGAGTGTATATATCATGTCATTTCC 57.065 33.333 0.00 0.00 0.00 3.13
1337 1353 4.535781 TCCATTATCAAACCCATCCACTG 58.464 43.478 0.00 0.00 0.00 3.66
1342 1358 1.607467 AAACCCATCCACTGGCTGC 60.607 57.895 0.00 0.00 44.46 5.25
1351 1367 3.543680 TCCACTGGCTGCTCTTAATAC 57.456 47.619 0.00 0.00 0.00 1.89
1354 1370 4.080356 TCCACTGGCTGCTCTTAATACATT 60.080 41.667 0.00 0.00 0.00 2.71
1376 1392 6.494893 TTTCTTCATTTGTTAGGTGATCCG 57.505 37.500 0.00 0.00 39.05 4.18
1403 1419 4.649674 AGGAACTGTTTCACACTCTACTGA 59.350 41.667 0.98 0.00 37.18 3.41
1405 1421 6.493802 AGGAACTGTTTCACACTCTACTGATA 59.506 38.462 0.98 0.00 37.18 2.15
1430 1446 8.985315 AGAATGAATTAATGCTACCATCAAGA 57.015 30.769 0.00 0.00 0.00 3.02
1431 1447 9.584008 AGAATGAATTAATGCTACCATCAAGAT 57.416 29.630 0.00 0.00 0.00 2.40
1439 1455 9.851686 TTAATGCTACCATCAAGATAATTCACT 57.148 29.630 0.00 0.00 0.00 3.41
1443 1655 8.677300 TGCTACCATCAAGATAATTCACTTTTC 58.323 33.333 0.00 0.00 0.00 2.29
1455 1667 6.884280 AATTCACTTTTCCAGTCCTAGTTG 57.116 37.500 0.00 0.00 30.92 3.16
1458 1670 6.488769 TCACTTTTCCAGTCCTAGTTGTTA 57.511 37.500 0.00 0.00 30.92 2.41
1463 1675 7.498239 ACTTTTCCAGTCCTAGTTGTTAAACTC 59.502 37.037 0.00 0.00 43.34 3.01
1465 1677 3.678548 CCAGTCCTAGTTGTTAAACTCGC 59.321 47.826 0.00 0.00 43.34 5.03
1477 1699 1.308998 AAACTCGCTGGTCAACAAGG 58.691 50.000 0.00 0.00 0.00 3.61
1479 1701 1.302033 CTCGCTGGTCAACAAGGCT 60.302 57.895 0.00 0.00 0.00 4.58
1483 1705 1.443802 GCTGGTCAACAAGGCTACTC 58.556 55.000 0.00 0.00 0.00 2.59
1510 1732 7.841915 TCAATCGTTACATCTTATTTGCAGA 57.158 32.000 0.00 0.00 0.00 4.26
1516 1738 7.120579 TCGTTACATCTTATTTGCAGAAATGGT 59.879 33.333 0.00 0.00 33.63 3.55
1554 1776 1.434696 GCAAACCTGCGATGGATGG 59.565 57.895 1.07 0.00 39.20 3.51
1557 1779 0.611618 AAACCTGCGATGGATGGCAA 60.612 50.000 0.00 0.00 40.95 4.52
1558 1780 0.396139 AACCTGCGATGGATGGCAAT 60.396 50.000 0.00 0.00 40.95 3.56
1592 1814 8.951243 AGATTAAAGCTTTCAAGATCAGGTTAC 58.049 33.333 16.57 0.00 0.00 2.50
1595 1817 6.566197 AAGCTTTCAAGATCAGGTTACTTG 57.434 37.500 0.00 0.00 41.27 3.16
1612 1834 6.717997 GGTTACTTGAAACCCCATCTTCTTTA 59.282 38.462 0.00 0.00 42.68 1.85
1614 1836 8.803235 GTTACTTGAAACCCCATCTTCTTTATT 58.197 33.333 0.00 0.00 0.00 1.40
1619 1841 7.010160 TGAAACCCCATCTTCTTTATTTGTCT 58.990 34.615 0.00 0.00 0.00 3.41
1620 1842 8.167392 TGAAACCCCATCTTCTTTATTTGTCTA 58.833 33.333 0.00 0.00 0.00 2.59
1621 1843 9.190317 GAAACCCCATCTTCTTTATTTGTCTAT 57.810 33.333 0.00 0.00 0.00 1.98
1622 1844 8.525290 AACCCCATCTTCTTTATTTGTCTATG 57.475 34.615 0.00 0.00 0.00 2.23
1623 1845 7.643123 ACCCCATCTTCTTTATTTGTCTATGT 58.357 34.615 0.00 0.00 0.00 2.29
1624 1846 8.116026 ACCCCATCTTCTTTATTTGTCTATGTT 58.884 33.333 0.00 0.00 0.00 2.71
1625 1847 8.408601 CCCCATCTTCTTTATTTGTCTATGTTG 58.591 37.037 0.00 0.00 0.00 3.33
1626 1848 9.177608 CCCATCTTCTTTATTTGTCTATGTTGA 57.822 33.333 0.00 0.00 0.00 3.18
1690 1913 7.306953 CCATACATTTTGAAAATTTTGCAGGG 58.693 34.615 8.47 0.00 0.00 4.45
1696 1919 8.566260 CATTTTGAAAATTTTGCAGGGTAATCA 58.434 29.630 8.47 0.00 0.00 2.57
1712 1935 8.522830 CAGGGTAATCAAAAACTACAATGACAT 58.477 33.333 0.00 0.00 0.00 3.06
1719 1942 5.627499 AAAACTACAATGACATCACGCAT 57.373 34.783 0.00 0.00 0.00 4.73
1737 1960 5.753438 CACGCATCACTACTTGTATACCATT 59.247 40.000 0.00 0.00 0.00 3.16
1738 1961 6.257849 CACGCATCACTACTTGTATACCATTT 59.742 38.462 0.00 0.00 0.00 2.32
1743 1966 9.817809 CATCACTACTTGTATACCATTTACACT 57.182 33.333 0.00 0.00 29.60 3.55
1770 1993 7.766278 ACATTAGACATTCATAAGAGAAACGCT 59.234 33.333 0.00 0.00 0.00 5.07
1786 2009 7.308782 AGAAACGCTCTCAAGGTAATTATTG 57.691 36.000 0.00 0.00 0.00 1.90
1787 2010 7.103641 AGAAACGCTCTCAAGGTAATTATTGA 58.896 34.615 2.39 2.39 34.41 2.57
1789 2012 8.958119 AAACGCTCTCAAGGTAATTATTGATA 57.042 30.769 2.72 0.00 35.04 2.15
1868 2092 6.245408 TCTCATAGGCAAAAATACAACCTGT 58.755 36.000 0.00 0.00 31.79 4.00
1872 2096 4.729868 AGGCAAAAATACAACCTGTCTCT 58.270 39.130 0.00 0.00 0.00 3.10
1874 2098 6.485171 AGGCAAAAATACAACCTGTCTCTAT 58.515 36.000 0.00 0.00 0.00 1.98
1875 2099 6.948309 AGGCAAAAATACAACCTGTCTCTATT 59.052 34.615 0.00 0.00 0.00 1.73
1885 2109 5.171339 ACCTGTCTCTATTGCATCAACTT 57.829 39.130 0.00 0.00 0.00 2.66
1887 2111 5.413833 ACCTGTCTCTATTGCATCAACTTTG 59.586 40.000 0.00 0.00 0.00 2.77
1889 2113 6.595326 CCTGTCTCTATTGCATCAACTTTGTA 59.405 38.462 0.00 0.00 0.00 2.41
1923 2147 3.119009 TCAATTACCCCTTCGGAGGTA 57.881 47.619 9.48 0.00 41.85 3.08
1926 2150 0.712380 TTACCCCTTCGGAGGTACCT 59.288 55.000 16.26 16.26 41.85 3.08
1935 2159 1.626321 TCGGAGGTACCTTTGCATTCA 59.374 47.619 17.53 0.00 36.31 2.57
1952 2176 4.919754 GCATTCATCAACAAAGGACAAGAC 59.080 41.667 0.00 0.00 0.00 3.01
1966 2190 2.821969 GACAAGACATTTGCCATCCTGT 59.178 45.455 0.00 0.00 0.00 4.00
1968 2192 1.180029 AGACATTTGCCATCCTGTGC 58.820 50.000 0.00 0.00 0.00 4.57
1993 2217 1.153429 GCCTACCGGTAAGTGCTGG 60.153 63.158 16.65 13.05 40.67 4.85
1996 2220 2.313317 CCTACCGGTAAGTGCTGGATA 58.687 52.381 16.65 0.00 38.27 2.59
2017 2241 7.665561 GATAGCTGATCCATAAAGTTCTTCC 57.334 40.000 0.00 0.00 0.00 3.46
2022 2246 7.718753 AGCTGATCCATAAAGTTCTTCCATTAG 59.281 37.037 0.00 0.00 0.00 1.73
2042 2266 9.632807 CCATTAGTAAGAGAGATAACTACATGC 57.367 37.037 0.00 0.00 0.00 4.06
2045 2269 7.197071 AGTAAGAGAGATAACTACATGCTCG 57.803 40.000 0.00 0.00 0.00 5.03
2047 2271 6.458232 AAGAGAGATAACTACATGCTCGTT 57.542 37.500 0.00 0.00 0.00 3.85
2048 2272 5.826586 AGAGAGATAACTACATGCTCGTTG 58.173 41.667 0.00 0.00 0.00 4.10
2062 2286 4.448210 TGCTCGTTGACTAAGTTCCTTTT 58.552 39.130 0.00 0.00 0.00 2.27
2063 2287 4.272504 TGCTCGTTGACTAAGTTCCTTTTG 59.727 41.667 0.00 0.00 0.00 2.44
2065 2289 4.448210 TCGTTGACTAAGTTCCTTTTGCT 58.552 39.130 0.00 0.00 0.00 3.91
2067 2291 5.464389 TCGTTGACTAAGTTCCTTTTGCTAC 59.536 40.000 0.00 0.00 0.00 3.58
2070 2294 7.359014 CGTTGACTAAGTTCCTTTTGCTACTAC 60.359 40.741 0.00 0.00 0.00 2.73
2085 2309 6.009115 TGCTACTACACATGTATATCCACG 57.991 41.667 0.00 0.00 0.00 4.94
2086 2310 5.533528 TGCTACTACACATGTATATCCACGT 59.466 40.000 0.00 0.00 0.00 4.49
2087 2311 6.040054 TGCTACTACACATGTATATCCACGTT 59.960 38.462 0.00 0.00 0.00 3.99
2092 2316 5.357257 ACACATGTATATCCACGTTTCTCC 58.643 41.667 0.00 0.00 0.00 3.71
2094 2318 4.202326 ACATGTATATCCACGTTTCTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
2107 2331 6.990349 CACGTTTCTCCCCAATAACATATAGT 59.010 38.462 0.00 0.00 0.00 2.12
2111 2335 7.699709 TTCTCCCCAATAACATATAGTTCCA 57.300 36.000 0.00 0.00 41.64 3.53
2113 2337 6.617784 TCTCCCCAATAACATATAGTTCCACA 59.382 38.462 0.00 0.00 41.64 4.17
2123 2348 6.240145 ACATATAGTTCCACATGCATGCATA 58.760 36.000 31.73 14.75 34.91 3.14
2124 2349 6.373495 ACATATAGTTCCACATGCATGCATAG 59.627 38.462 31.73 25.51 34.91 2.23
2139 2364 4.513198 TGCATAGCCAACAGTTAAAACC 57.487 40.909 0.00 0.00 0.00 3.27
2160 2385 6.124088 ACCTAAAGTTTCATGATTCATCGC 57.876 37.500 0.00 0.00 0.00 4.58
2161 2386 5.066505 ACCTAAAGTTTCATGATTCATCGCC 59.933 40.000 0.00 0.00 0.00 5.54
2164 2389 5.389859 AAGTTTCATGATTCATCGCCAAA 57.610 34.783 0.00 0.00 0.00 3.28
2170 2395 7.514784 TTCATGATTCATCGCCAAAGATAAT 57.485 32.000 0.00 0.00 0.00 1.28
2175 2400 6.320926 TGATTCATCGCCAAAGATAATTCCAA 59.679 34.615 0.00 0.00 0.00 3.53
2176 2401 5.756195 TCATCGCCAAAGATAATTCCAAG 57.244 39.130 0.00 0.00 0.00 3.61
2184 2410 6.813649 GCCAAAGATAATTCCAAGTTTTCTCC 59.186 38.462 0.00 0.00 0.00 3.71
2190 2416 9.104713 AGATAATTCCAAGTTTTCTCCCATTTT 57.895 29.630 0.00 0.00 0.00 1.82
2197 2423 6.213397 CCAAGTTTTCTCCCATTTTCCCTAAT 59.787 38.462 0.00 0.00 0.00 1.73
2214 2440 8.958119 TTCCCTAATACAGTGATATTCAACAC 57.042 34.615 0.00 0.00 37.30 3.32
2238 2464 3.784525 GCGTTAGCTTGAAGTTAATCCGC 60.785 47.826 16.33 16.33 41.01 5.54
2265 2491 1.191489 TGGACATCAGCCAGGACGAA 61.191 55.000 0.00 0.00 0.00 3.85
2324 2552 8.594881 AGTACTTTCTTGTTATTCACTCACAG 57.405 34.615 0.00 0.00 0.00 3.66
2330 2558 8.703604 TTCTTGTTATTCACTCACAGTATAGC 57.296 34.615 0.00 0.00 0.00 2.97
2356 2585 9.965824 CTGACACTATTTCAATTACTTTTTGGT 57.034 29.630 0.00 0.00 0.00 3.67
2387 2616 2.676839 CAGGCAAGTCATTACAGAGCAG 59.323 50.000 0.00 0.00 0.00 4.24
2394 2623 5.782893 AGTCATTACAGAGCAGATCTACC 57.217 43.478 0.00 0.00 36.10 3.18
2396 2625 5.534654 AGTCATTACAGAGCAGATCTACCTC 59.465 44.000 12.44 12.44 36.10 3.85
2411 2640 5.516059 TCTACCTCGGGATGATATACACT 57.484 43.478 0.00 0.00 0.00 3.55
2415 2644 5.254901 ACCTCGGGATGATATACACTACTC 58.745 45.833 0.00 0.00 0.00 2.59
2457 2687 2.366590 TCCTCCATCTGATTGGTCGATG 59.633 50.000 0.00 0.00 38.01 3.84
2458 2688 2.549563 CCTCCATCTGATTGGTCGATGG 60.550 54.545 10.47 10.47 45.93 3.51
2462 2692 1.567357 TCTGATTGGTCGATGGTCCA 58.433 50.000 0.00 0.00 0.00 4.02
2463 2693 1.207089 TCTGATTGGTCGATGGTCCAC 59.793 52.381 0.00 0.00 33.12 4.02
2471 2701 2.406130 GTCGATGGTCCACGTGTTAAA 58.594 47.619 15.65 0.00 0.00 1.52
2473 2703 3.434299 GTCGATGGTCCACGTGTTAAATT 59.566 43.478 15.65 0.00 0.00 1.82
2480 2710 6.056884 TGGTCCACGTGTTAAATTTTAGAGT 58.943 36.000 15.65 0.00 0.00 3.24
2482 2712 7.067251 TGGTCCACGTGTTAAATTTTAGAGTTT 59.933 33.333 15.65 0.00 0.00 2.66
2520 2751 4.947388 TGTCTGACATTTATGGTTAAGCCC 59.053 41.667 6.36 0.00 36.04 5.19
2522 2753 5.066505 GTCTGACATTTATGGTTAAGCCCTG 59.933 44.000 2.24 0.00 36.04 4.45
2524 2755 3.699038 GACATTTATGGTTAAGCCCTGCA 59.301 43.478 1.51 0.00 36.04 4.41
2525 2756 4.093011 ACATTTATGGTTAAGCCCTGCAA 58.907 39.130 1.51 0.00 36.04 4.08
2535 2767 5.422145 GTTAAGCCCTGCAATGATTTTCAT 58.578 37.500 0.00 0.00 39.09 2.57
2544 2776 6.976925 CCTGCAATGATTTTCATTTAGACCTC 59.023 38.462 0.07 0.00 44.03 3.85
2550 2782 9.471702 AATGATTTTCATTTAGACCTCTCATGT 57.528 29.630 0.00 0.00 44.03 3.21
2556 2788 8.547967 TTCATTTAGACCTCTCATGTTTGTAC 57.452 34.615 0.00 0.00 0.00 2.90
2557 2789 7.676004 TCATTTAGACCTCTCATGTTTGTACA 58.324 34.615 0.00 0.00 38.95 2.90
2572 2804 9.528018 CATGTTTGTACAATATATTTCAACCCC 57.472 33.333 9.56 0.00 37.91 4.95
2573 2805 7.763356 TGTTTGTACAATATATTTCAACCCCG 58.237 34.615 9.56 0.00 0.00 5.73
2574 2806 6.945938 TTGTACAATATATTTCAACCCCGG 57.054 37.500 3.59 0.00 0.00 5.73
2575 2807 6.003859 TGTACAATATATTTCAACCCCGGT 57.996 37.500 0.00 0.00 0.00 5.28
2576 2808 6.424883 TGTACAATATATTTCAACCCCGGTT 58.575 36.000 0.00 0.00 39.13 4.44
2577 2809 6.543100 TGTACAATATATTTCAACCCCGGTTC 59.457 38.462 0.00 0.00 36.00 3.62
2578 2810 5.511363 ACAATATATTTCAACCCCGGTTCA 58.489 37.500 0.00 0.00 36.00 3.18
2579 2811 5.358725 ACAATATATTTCAACCCCGGTTCAC 59.641 40.000 0.00 0.00 36.00 3.18
2580 2812 2.953284 TATTTCAACCCCGGTTCACA 57.047 45.000 0.00 0.00 36.00 3.58
2581 2813 1.324383 ATTTCAACCCCGGTTCACAC 58.676 50.000 0.00 0.00 36.00 3.82
2582 2814 0.034380 TTTCAACCCCGGTTCACACA 60.034 50.000 0.00 0.00 36.00 3.72
2583 2815 0.183971 TTCAACCCCGGTTCACACAT 59.816 50.000 0.00 0.00 36.00 3.21
2584 2816 0.183971 TCAACCCCGGTTCACACATT 59.816 50.000 0.00 0.00 36.00 2.71
2620 2852 8.110271 TCAGTTATTTTATTATGTGGTGTCCCA 58.890 33.333 0.00 0.00 38.87 4.37
2628 2860 2.121735 TGGTGTCCCACATCCCCA 60.122 61.111 0.00 0.00 35.17 4.96
2629 2861 2.355115 GGTGTCCCACATCCCCAC 59.645 66.667 0.00 0.00 35.86 4.61
2630 2862 2.231380 GGTGTCCCACATCCCCACT 61.231 63.158 0.00 0.00 35.86 4.00
2632 2864 0.112412 GTGTCCCACATCCCCACTTT 59.888 55.000 0.00 0.00 34.08 2.66
2634 2866 1.256812 GTCCCACATCCCCACTTTTG 58.743 55.000 0.00 0.00 0.00 2.44
2635 2867 0.541764 TCCCACATCCCCACTTTTGC 60.542 55.000 0.00 0.00 0.00 3.68
2636 2868 1.543944 CCCACATCCCCACTTTTGCC 61.544 60.000 0.00 0.00 0.00 4.52
2638 2870 0.604578 CACATCCCCACTTTTGCCTG 59.395 55.000 0.00 0.00 0.00 4.85
2639 2871 0.542702 ACATCCCCACTTTTGCCTGG 60.543 55.000 0.00 0.00 0.00 4.45
2640 2872 0.251742 CATCCCCACTTTTGCCTGGA 60.252 55.000 0.00 0.00 0.00 3.86
2643 2875 1.713647 TCCCCACTTTTGCCTGGATTA 59.286 47.619 0.00 0.00 0.00 1.75
2644 2876 1.824852 CCCCACTTTTGCCTGGATTAC 59.175 52.381 0.00 0.00 0.00 1.89
2645 2877 2.524306 CCCACTTTTGCCTGGATTACA 58.476 47.619 0.00 0.00 0.00 2.41
2646 2878 2.896685 CCCACTTTTGCCTGGATTACAA 59.103 45.455 0.00 0.00 0.00 2.41
2647 2879 3.306019 CCCACTTTTGCCTGGATTACAAC 60.306 47.826 0.00 0.00 0.00 3.32
2648 2880 3.320541 CCACTTTTGCCTGGATTACAACA 59.679 43.478 0.00 0.00 0.00 3.33
2649 2881 4.298332 CACTTTTGCCTGGATTACAACAC 58.702 43.478 0.00 0.00 0.00 3.32
2650 2882 3.957497 ACTTTTGCCTGGATTACAACACA 59.043 39.130 0.00 0.00 0.00 3.72
2652 2884 3.500448 TTGCCTGGATTACAACACAGA 57.500 42.857 0.00 0.00 32.86 3.41
2653 2885 3.719268 TGCCTGGATTACAACACAGAT 57.281 42.857 0.00 0.00 32.86 2.90
2655 2887 2.098117 GCCTGGATTACAACACAGATGC 59.902 50.000 0.00 0.00 32.86 3.91
2656 2888 3.346315 CCTGGATTACAACACAGATGCA 58.654 45.455 0.00 0.00 32.86 3.96
2657 2889 3.127548 CCTGGATTACAACACAGATGCAC 59.872 47.826 0.00 0.00 32.86 4.57
2658 2890 4.005650 CTGGATTACAACACAGATGCACT 58.994 43.478 0.00 0.00 32.86 4.40
2672 2989 1.449601 GCACTCACACCCCATACCG 60.450 63.158 0.00 0.00 0.00 4.02
2681 2998 1.212250 ACCCCATACCGCCCTTCTTT 61.212 55.000 0.00 0.00 0.00 2.52
2686 3003 0.546598 ATACCGCCCTTCTTTCCCAG 59.453 55.000 0.00 0.00 0.00 4.45
2691 3008 1.405661 CGCCCTTCTTTCCCAGACTAC 60.406 57.143 0.00 0.00 0.00 2.73
2700 3017 2.160721 TCCCAGACTACCATCTGTCC 57.839 55.000 2.35 0.00 43.99 4.02
2702 3019 2.035632 CCCAGACTACCATCTGTCCTC 58.964 57.143 2.35 0.00 43.99 3.71
2729 3046 0.813184 CACCATGGACATTGACCAGC 59.187 55.000 21.47 0.00 40.89 4.85
2737 3054 4.517285 TGGACATTGACCAGCTAGATTTC 58.483 43.478 3.63 0.00 33.22 2.17
2788 3105 2.632028 TGAGATCTTCATCAGGCTAGGC 59.368 50.000 8.55 8.55 0.00 3.93
2799 3116 1.047002 AGGCTAGGCTGCACTAGATG 58.953 55.000 19.53 0.00 42.40 2.90
2800 3117 0.755686 GGCTAGGCTGCACTAGATGT 59.244 55.000 21.62 0.00 42.40 3.06
2816 3133 7.085116 CACTAGATGTCTTGTTCGTAGTTCTT 58.915 38.462 0.00 0.00 29.82 2.52
2836 3153 6.777213 TCTTTAGTGAGTCCTAGATGGTTC 57.223 41.667 0.00 0.00 37.07 3.62
2845 3162 2.887783 TCCTAGATGGTTCGAGATCTGC 59.112 50.000 0.00 0.00 37.07 4.26
2852 3169 0.820871 GTTCGAGATCTGCACCTCCT 59.179 55.000 0.00 0.00 0.00 3.69
2865 3182 2.898705 CACCTCCTAGCAGTTCATCAC 58.101 52.381 0.00 0.00 0.00 3.06
2866 3183 2.234661 CACCTCCTAGCAGTTCATCACA 59.765 50.000 0.00 0.00 0.00 3.58
2879 3196 2.027385 TCATCACAGAGTATGCTCGCT 58.973 47.619 5.08 0.00 46.03 4.93
2906 3223 1.339610 CTCCAGCAGTCCTAGGATTCG 59.660 57.143 16.27 7.70 0.00 3.34
2919 3236 0.248215 GGATTCGTTGCTGCATTCGG 60.248 55.000 20.96 5.87 0.00 4.30
2922 3239 3.736100 CGTTGCTGCATTCGGGCA 61.736 61.111 1.84 0.00 42.53 5.36
2952 3269 1.282248 CTGCACGTACGTCTTGTGGG 61.282 60.000 19.94 6.61 34.24 4.61
2953 3270 2.664436 GCACGTACGTCTTGTGGGC 61.664 63.158 19.94 13.38 34.24 5.36
2956 3273 1.662446 CGTACGTCTTGTGGGCGTT 60.662 57.895 7.22 0.00 39.64 4.84
2959 3276 0.876777 TACGTCTTGTGGGCGTTGTG 60.877 55.000 0.00 0.00 39.64 3.33
2963 3280 2.904866 TTGTGGGCGTTGTGGCTC 60.905 61.111 0.00 0.00 44.11 4.70
2964 3281 3.705934 TTGTGGGCGTTGTGGCTCA 62.706 57.895 0.00 0.00 42.19 4.26
2992 3309 0.540923 ATCCAGGACAAGCTGCTCTC 59.459 55.000 1.00 0.28 0.00 3.20
3008 3325 0.116342 TCTCCTTGCTAGGGTGGACA 59.884 55.000 14.51 0.00 42.26 4.02
3011 3328 0.911769 CCTTGCTAGGGTGGACATGA 59.088 55.000 6.27 0.00 37.94 3.07
3048 3365 2.158986 AGAACATCCTCGCATCTGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
3062 3379 1.345741 CTGAAGGAGGTGAGTTGCTCA 59.654 52.381 0.00 0.00 38.25 4.26
3076 3393 0.907486 TGCTCATCTTGGTCAGAGGG 59.093 55.000 0.00 0.00 33.80 4.30
3096 3413 2.048503 CGACGGCGGGTTCTTCTT 60.049 61.111 13.24 0.00 0.00 2.52
3100 3417 0.393820 ACGGCGGGTTCTTCTTTGTA 59.606 50.000 13.24 0.00 0.00 2.41
3108 3425 4.083484 CGGGTTCTTCTTTGTATGTCCAAC 60.083 45.833 0.00 0.00 0.00 3.77
3110 3427 6.235664 GGGTTCTTCTTTGTATGTCCAACTA 58.764 40.000 0.00 0.00 0.00 2.24
3116 3433 6.428083 TCTTTGTATGTCCAACTACTCCAA 57.572 37.500 0.00 0.00 0.00 3.53
3125 3442 3.055385 TCCAACTACTCCAATTTCTCGGG 60.055 47.826 0.00 0.00 0.00 5.14
3136 3453 3.567478 ATTTCTCGGGCATTCTTAGCT 57.433 42.857 0.00 0.00 0.00 3.32
3139 3456 0.250081 CTCGGGCATTCTTAGCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
3149 3466 1.765314 TCTTAGCTCCCAGAATGCCTC 59.235 52.381 0.00 0.00 31.97 4.70
3157 3474 1.333636 CCAGAATGCCTCGAGTCCCT 61.334 60.000 12.31 0.00 31.97 4.20
3160 3477 0.827368 GAATGCCTCGAGTCCCTCTT 59.173 55.000 12.31 0.00 0.00 2.85
3161 3478 0.539051 AATGCCTCGAGTCCCTCTTG 59.461 55.000 12.31 0.00 0.00 3.02
3162 3479 1.965754 ATGCCTCGAGTCCCTCTTGC 61.966 60.000 12.31 5.39 0.00 4.01
3166 3483 2.232298 CTCGAGTCCCTCTTGCCCAC 62.232 65.000 3.62 0.00 0.00 4.61
3168 3485 2.936032 AGTCCCTCTTGCCCACCC 60.936 66.667 0.00 0.00 0.00 4.61
3177 3494 2.776370 CTTGCCCACCCTCAGCACAT 62.776 60.000 0.00 0.00 35.96 3.21
3180 3497 2.304056 CCCACCCTCAGCACATCCT 61.304 63.158 0.00 0.00 0.00 3.24
3181 3498 1.077930 CCACCCTCAGCACATCCTG 60.078 63.158 0.00 0.00 0.00 3.86
3187 3504 3.094572 CCCTCAGCACATCCTGAATTTT 58.905 45.455 0.00 0.00 41.02 1.82
3190 3507 5.393461 CCCTCAGCACATCCTGAATTTTTAC 60.393 44.000 0.00 0.00 41.02 2.01
3193 3510 3.443681 AGCACATCCTGAATTTTTACGGG 59.556 43.478 0.00 0.00 0.00 5.28
3199 3516 5.066968 TCCTGAATTTTTACGGGCAATTC 57.933 39.130 0.00 0.00 37.41 2.17
3210 3527 0.455815 GGGCAATTCGGTGTCATTCC 59.544 55.000 0.00 0.00 0.00 3.01
3211 3528 1.463674 GGCAATTCGGTGTCATTCCT 58.536 50.000 0.00 0.00 0.00 3.36
3212 3529 1.401905 GGCAATTCGGTGTCATTCCTC 59.598 52.381 0.00 0.00 0.00 3.71
3216 3533 2.472695 TTCGGTGTCATTCCTCTTGG 57.527 50.000 0.00 0.00 0.00 3.61
3220 3537 1.271597 GGTGTCATTCCTCTTGGCAGT 60.272 52.381 0.00 0.00 27.45 4.40
3254 3572 5.835113 TTCTTCTTTGTTAAGCAAGCAGT 57.165 34.783 0.00 0.00 38.47 4.40
3265 3583 1.315981 GCAAGCAGTAGGCCCTTTCC 61.316 60.000 0.00 0.00 46.50 3.13
3267 3585 1.076438 AAGCAGTAGGCCCTTTCCTT 58.924 50.000 0.00 0.00 46.50 3.36
3303 3621 4.380444 GGTTTGAGTTTCAGTTCAGTTGCA 60.380 41.667 0.00 0.00 0.00 4.08
3306 3624 4.454678 TGAGTTTCAGTTCAGTTGCAGAT 58.545 39.130 0.00 0.00 0.00 2.90
3366 3684 1.530655 CCGCTTTGTTTCCCCACCT 60.531 57.895 0.00 0.00 0.00 4.00
3383 3701 1.075698 ACCTCTTCGAACTCCTCCTGA 59.924 52.381 0.00 0.00 0.00 3.86
3386 3704 3.568007 CCTCTTCGAACTCCTCCTGATAG 59.432 52.174 0.00 0.00 0.00 2.08
3394 3712 4.484026 ACTCCTCCTGATAGTGATGGAT 57.516 45.455 0.00 0.00 0.00 3.41
3424 3742 3.392285 CCATTGGGATCCATACTGTCTCA 59.608 47.826 15.23 0.00 35.59 3.27
3468 3786 7.572523 CATGATGTATGTGGTAGGATTTGTT 57.427 36.000 0.00 0.00 31.92 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.685106 AGGTTCAGAGGAGAGTGTGA 57.315 50.000 0.00 0.00 0.00 3.58
35 36 8.049117 TGCTCTTGTTTCTTCATTCCTATGTAT 58.951 33.333 0.00 0.00 33.34 2.29
42 43 6.507023 TCTTTTGCTCTTGTTTCTTCATTCC 58.493 36.000 0.00 0.00 0.00 3.01
43 44 7.992180 TTCTTTTGCTCTTGTTTCTTCATTC 57.008 32.000 0.00 0.00 0.00 2.67
47 48 8.640091 AAAGATTCTTTTGCTCTTGTTTCTTC 57.360 30.769 5.82 0.00 29.96 2.87
80 81 3.776969 AGCAGATTCCATTCAGTACCTCA 59.223 43.478 0.00 0.00 0.00 3.86
81 82 4.414337 AGCAGATTCCATTCAGTACCTC 57.586 45.455 0.00 0.00 0.00 3.85
92 93 7.667219 AGAAAAGAAGAAATGTAGCAGATTCCA 59.333 33.333 0.00 0.00 0.00 3.53
109 110 6.159293 GGGGTAAGAAAATGCAGAAAAGAAG 58.841 40.000 0.00 0.00 0.00 2.85
110 111 5.600484 TGGGGTAAGAAAATGCAGAAAAGAA 59.400 36.000 0.00 0.00 0.00 2.52
115 116 5.826643 ACTATGGGGTAAGAAAATGCAGAA 58.173 37.500 0.00 0.00 0.00 3.02
119 120 5.163550 GGTGAACTATGGGGTAAGAAAATGC 60.164 44.000 0.00 0.00 0.00 3.56
120 121 5.359860 GGGTGAACTATGGGGTAAGAAAATG 59.640 44.000 0.00 0.00 0.00 2.32
123 124 3.917629 TGGGTGAACTATGGGGTAAGAAA 59.082 43.478 0.00 0.00 0.00 2.52
143 144 3.450457 AGGATCAGTTCTACTTCAGCTGG 59.550 47.826 15.13 0.36 0.00 4.85
160 161 2.202987 CTGTGGCGAGGCAGGATC 60.203 66.667 0.00 0.00 0.00 3.36
161 162 4.479993 GCTGTGGCGAGGCAGGAT 62.480 66.667 0.00 0.00 33.62 3.24
176 177 1.002379 CAGGAAAGCTGGCTCTGCT 60.002 57.895 0.00 1.64 40.24 4.24
211 212 8.407457 TGTAAATCTGATACTTCGATGTGAAC 57.593 34.615 13.80 5.96 31.87 3.18
213 214 9.034544 CATTGTAAATCTGATACTTCGATGTGA 57.965 33.333 13.80 3.28 0.00 3.58
228 229 9.739276 TTAGAAGAACATGTCCATTGTAAATCT 57.261 29.630 0.00 0.00 0.00 2.40
234 235 9.520515 AATAACTTAGAAGAACATGTCCATTGT 57.479 29.630 0.00 0.00 0.00 2.71
237 238 8.960591 CCAAATAACTTAGAAGAACATGTCCAT 58.039 33.333 0.00 0.00 0.00 3.41
239 240 8.336801 ACCAAATAACTTAGAAGAACATGTCC 57.663 34.615 0.00 0.00 0.00 4.02
254 255 8.299570 CACTTCTTCTGCAATAACCAAATAACT 58.700 33.333 0.00 0.00 0.00 2.24
255 256 8.082242 ACACTTCTTCTGCAATAACCAAATAAC 58.918 33.333 0.00 0.00 0.00 1.89
256 257 8.177119 ACACTTCTTCTGCAATAACCAAATAA 57.823 30.769 0.00 0.00 0.00 1.40
257 258 7.759489 ACACTTCTTCTGCAATAACCAAATA 57.241 32.000 0.00 0.00 0.00 1.40
259 260 6.127479 ACAACACTTCTTCTGCAATAACCAAA 60.127 34.615 0.00 0.00 0.00 3.28
260 261 5.359576 ACAACACTTCTTCTGCAATAACCAA 59.640 36.000 0.00 0.00 0.00 3.67
266 271 3.067180 CACCACAACACTTCTTCTGCAAT 59.933 43.478 0.00 0.00 0.00 3.56
290 295 1.336887 ACGAGTGGAATGGAACGTGAG 60.337 52.381 0.00 0.00 32.93 3.51
294 299 2.888594 ACATACGAGTGGAATGGAACG 58.111 47.619 0.00 0.00 0.00 3.95
319 324 6.959639 AACTGCATACAATTAATACCAGGG 57.040 37.500 0.00 0.00 0.00 4.45
329 334 8.342634 GTTGGTTCGATATAACTGCATACAATT 58.657 33.333 0.00 0.00 0.00 2.32
341 346 8.009622 TGTGTACTATGGTTGGTTCGATATAA 57.990 34.615 0.00 0.00 0.00 0.98
345 350 4.811969 TGTGTACTATGGTTGGTTCGAT 57.188 40.909 0.00 0.00 0.00 3.59
347 352 5.657474 AGTATGTGTACTATGGTTGGTTCG 58.343 41.667 0.00 0.00 39.36 3.95
348 353 7.201496 CGAAAGTATGTGTACTATGGTTGGTTC 60.201 40.741 0.00 0.00 40.24 3.62
377 382 2.122056 ACTGCCCCCTTCGGTAGT 59.878 61.111 0.00 0.00 43.27 2.73
382 387 2.266055 GAGACACTGCCCCCTTCG 59.734 66.667 0.00 0.00 0.00 3.79
465 470 8.746623 ACAAAGATGTAGCAGTACGACGGTAC 62.747 46.154 0.00 12.52 42.73 3.34
466 471 2.910199 AGATGTAGCAGTACGACGGTA 58.090 47.619 0.00 0.00 30.95 4.02
467 472 1.747709 AGATGTAGCAGTACGACGGT 58.252 50.000 0.00 0.00 30.95 4.83
468 473 2.846039 AAGATGTAGCAGTACGACGG 57.154 50.000 0.00 0.00 30.95 4.79
469 474 3.499048 ACAAAGATGTAGCAGTACGACG 58.501 45.455 0.00 0.00 38.24 5.12
470 475 4.091509 CCAACAAAGATGTAGCAGTACGAC 59.908 45.833 0.00 0.00 39.40 4.34
471 476 4.021807 TCCAACAAAGATGTAGCAGTACGA 60.022 41.667 0.00 0.00 39.40 3.43
472 477 4.242475 TCCAACAAAGATGTAGCAGTACG 58.758 43.478 0.00 0.00 39.40 3.67
473 478 5.479306 TCTCCAACAAAGATGTAGCAGTAC 58.521 41.667 0.00 0.00 39.40 2.73
474 479 5.337571 CCTCTCCAACAAAGATGTAGCAGTA 60.338 44.000 0.00 0.00 39.40 2.74
475 480 4.564406 CCTCTCCAACAAAGATGTAGCAGT 60.564 45.833 0.00 0.00 39.40 4.40
476 481 3.937706 CCTCTCCAACAAAGATGTAGCAG 59.062 47.826 0.00 0.00 39.40 4.24
477 482 3.582647 TCCTCTCCAACAAAGATGTAGCA 59.417 43.478 0.00 0.00 39.40 3.49
478 483 4.187694 CTCCTCTCCAACAAAGATGTAGC 58.812 47.826 0.00 0.00 39.40 3.58
481 486 3.808618 GCACTCCTCTCCAACAAAGATGT 60.809 47.826 0.00 0.00 43.14 3.06
486 491 2.507484 CATGCACTCCTCTCCAACAAA 58.493 47.619 0.00 0.00 0.00 2.83
492 497 0.615331 TGAACCATGCACTCCTCTCC 59.385 55.000 0.00 0.00 0.00 3.71
509 514 4.875536 CGGGTGAGTCAAATATCACATTGA 59.124 41.667 0.00 0.00 46.14 2.57
510 515 4.635765 ACGGGTGAGTCAAATATCACATTG 59.364 41.667 0.00 0.00 46.14 2.82
512 517 4.081142 TCACGGGTGAGTCAAATATCACAT 60.081 41.667 0.00 0.00 46.14 3.21
540 545 1.600957 CTTGCTGTCCAGAGTGTTGTG 59.399 52.381 0.00 0.00 0.00 3.33
541 546 1.475751 CCTTGCTGTCCAGAGTGTTGT 60.476 52.381 0.00 0.00 0.00 3.32
570 575 1.024579 GGAGTGGTACAACGCCATGG 61.025 60.000 17.59 7.63 44.16 3.66
590 595 3.521126 AGAACACATGCATCCCTTAGAGT 59.479 43.478 0.00 0.00 0.00 3.24
615 620 5.589831 AGGGAAGGTGGCAGTATTAAAATT 58.410 37.500 0.00 0.00 0.00 1.82
626 631 0.252881 ATCAGAGAGGGAAGGTGGCA 60.253 55.000 0.00 0.00 0.00 4.92
627 632 0.467804 GATCAGAGAGGGAAGGTGGC 59.532 60.000 0.00 0.00 0.00 5.01
632 637 3.102972 TGGAGTTGATCAGAGAGGGAAG 58.897 50.000 0.00 0.00 0.00 3.46
640 645 2.927028 CATGGCATGGAGTTGATCAGA 58.073 47.619 19.80 0.00 0.00 3.27
643 648 1.066605 GTGCATGGCATGGAGTTGATC 59.933 52.381 27.48 9.25 41.91 2.92
647 652 0.682209 GGAGTGCATGGCATGGAGTT 60.682 55.000 26.94 16.55 41.91 3.01
654 659 0.961019 GTCAAAAGGAGTGCATGGCA 59.039 50.000 0.00 0.00 35.60 4.92
656 661 2.821378 TCATGTCAAAAGGAGTGCATGG 59.179 45.455 0.00 0.00 34.29 3.66
660 665 3.304928 CCAGTTCATGTCAAAAGGAGTGC 60.305 47.826 0.00 0.00 0.00 4.40
668 674 6.434596 CGTTGATTAACCAGTTCATGTCAAA 58.565 36.000 0.00 0.00 33.12 2.69
671 677 4.154195 AGCGTTGATTAACCAGTTCATGTC 59.846 41.667 0.00 0.00 33.12 3.06
679 685 3.181497 CCAATGGAGCGTTGATTAACCAG 60.181 47.826 0.00 0.00 32.66 4.00
692 698 1.896220 TAATGCGATCCCAATGGAGC 58.104 50.000 0.00 1.27 46.08 4.70
704 713 7.751793 ACATATATAACGACGTGATTAATGCGA 59.248 33.333 2.46 0.00 0.00 5.10
705 714 7.834591 CACATATATAACGACGTGATTAATGCG 59.165 37.037 2.46 0.00 0.00 4.73
713 722 6.128090 GGGATCTCACATATATAACGACGTGA 60.128 42.308 0.00 0.00 32.79 4.35
715 724 5.163784 CGGGATCTCACATATATAACGACGT 60.164 44.000 0.00 0.00 0.00 4.34
720 729 6.092259 GGCAAACGGGATCTCACATATATAAC 59.908 42.308 0.00 0.00 0.00 1.89
723 732 4.565652 GGGCAAACGGGATCTCACATATAT 60.566 45.833 0.00 0.00 0.00 0.86
724 733 3.244422 GGGCAAACGGGATCTCACATATA 60.244 47.826 0.00 0.00 0.00 0.86
725 734 2.487265 GGGCAAACGGGATCTCACATAT 60.487 50.000 0.00 0.00 0.00 1.78
729 738 0.394352 ATGGGCAAACGGGATCTCAC 60.394 55.000 0.00 0.00 0.00 3.51
731 740 0.394352 ACATGGGCAAACGGGATCTC 60.394 55.000 0.00 0.00 0.00 2.75
735 744 0.110678 TAACACATGGGCAAACGGGA 59.889 50.000 0.00 0.00 0.00 5.14
736 745 0.242555 GTAACACATGGGCAAACGGG 59.757 55.000 0.00 0.00 0.00 5.28
738 747 2.227626 TGATGTAACACATGGGCAAACG 59.772 45.455 0.00 0.00 39.27 3.60
747 756 8.413229 GCCCTTATGTATTTTGATGTAACACAT 58.587 33.333 0.00 0.00 42.43 3.21
748 757 7.394641 TGCCCTTATGTATTTTGATGTAACACA 59.605 33.333 0.00 0.00 0.00 3.72
749 758 7.767261 TGCCCTTATGTATTTTGATGTAACAC 58.233 34.615 0.00 0.00 0.00 3.32
751 760 8.850156 AGATGCCCTTATGTATTTTGATGTAAC 58.150 33.333 0.00 0.00 0.00 2.50
753 762 8.217111 TGAGATGCCCTTATGTATTTTGATGTA 58.783 33.333 0.00 0.00 0.00 2.29
754 763 7.062322 TGAGATGCCCTTATGTATTTTGATGT 58.938 34.615 0.00 0.00 0.00 3.06
755 764 7.514784 TGAGATGCCCTTATGTATTTTGATG 57.485 36.000 0.00 0.00 0.00 3.07
756 765 7.560991 TGTTGAGATGCCCTTATGTATTTTGAT 59.439 33.333 0.00 0.00 0.00 2.57
757 766 6.889177 TGTTGAGATGCCCTTATGTATTTTGA 59.111 34.615 0.00 0.00 0.00 2.69
758 767 6.974622 GTGTTGAGATGCCCTTATGTATTTTG 59.025 38.462 0.00 0.00 0.00 2.44
759 768 6.891908 AGTGTTGAGATGCCCTTATGTATTTT 59.108 34.615 0.00 0.00 0.00 1.82
760 769 6.319658 CAGTGTTGAGATGCCCTTATGTATTT 59.680 38.462 0.00 0.00 0.00 1.40
761 770 5.824624 CAGTGTTGAGATGCCCTTATGTATT 59.175 40.000 0.00 0.00 0.00 1.89
762 771 5.130975 TCAGTGTTGAGATGCCCTTATGTAT 59.869 40.000 0.00 0.00 0.00 2.29
763 772 4.469586 TCAGTGTTGAGATGCCCTTATGTA 59.530 41.667 0.00 0.00 0.00 2.29
764 773 3.264193 TCAGTGTTGAGATGCCCTTATGT 59.736 43.478 0.00 0.00 0.00 2.29
765 774 3.877559 TCAGTGTTGAGATGCCCTTATG 58.122 45.455 0.00 0.00 0.00 1.90
766 775 4.574674 TTCAGTGTTGAGATGCCCTTAT 57.425 40.909 0.00 0.00 34.15 1.73
767 776 4.365514 TTTCAGTGTTGAGATGCCCTTA 57.634 40.909 0.00 0.00 34.15 2.69
768 777 2.957402 TTCAGTGTTGAGATGCCCTT 57.043 45.000 0.00 0.00 34.15 3.95
769 778 2.957402 TTTCAGTGTTGAGATGCCCT 57.043 45.000 0.00 0.00 34.15 5.19
770 779 3.507233 TGATTTTCAGTGTTGAGATGCCC 59.493 43.478 0.00 0.00 34.15 5.36
771 780 4.771590 TGATTTTCAGTGTTGAGATGCC 57.228 40.909 0.00 0.00 34.15 4.40
772 781 6.309737 GGATTTGATTTTCAGTGTTGAGATGC 59.690 38.462 0.00 0.00 34.15 3.91
776 785 5.922544 GTGGGATTTGATTTTCAGTGTTGAG 59.077 40.000 0.00 0.00 34.15 3.02
790 801 3.560453 CGGTTAAGGGAAGTGGGATTTGA 60.560 47.826 0.00 0.00 0.00 2.69
791 802 2.752903 CGGTTAAGGGAAGTGGGATTTG 59.247 50.000 0.00 0.00 0.00 2.32
793 804 1.990327 ACGGTTAAGGGAAGTGGGATT 59.010 47.619 0.00 0.00 0.00 3.01
794 805 1.665137 ACGGTTAAGGGAAGTGGGAT 58.335 50.000 0.00 0.00 0.00 3.85
795 806 1.437397 AACGGTTAAGGGAAGTGGGA 58.563 50.000 0.00 0.00 0.00 4.37
796 807 2.156917 GAAACGGTTAAGGGAAGTGGG 58.843 52.381 0.00 0.00 0.00 4.61
797 808 3.072211 GAGAAACGGTTAAGGGAAGTGG 58.928 50.000 0.00 0.00 0.00 4.00
798 809 3.072211 GGAGAAACGGTTAAGGGAAGTG 58.928 50.000 0.00 0.00 0.00 3.16
799 810 2.039480 GGGAGAAACGGTTAAGGGAAGT 59.961 50.000 0.00 0.00 0.00 3.01
800 811 2.039348 TGGGAGAAACGGTTAAGGGAAG 59.961 50.000 0.00 0.00 0.00 3.46
803 814 2.752903 CAATGGGAGAAACGGTTAAGGG 59.247 50.000 0.00 0.00 0.00 3.95
814 825 6.537453 TTGACTTGTTTTTCAATGGGAGAA 57.463 33.333 0.00 0.00 35.35 2.87
816 827 6.593382 TGTTTTGACTTGTTTTTCAATGGGAG 59.407 34.615 0.00 0.00 35.35 4.30
822 833 7.172190 TGCAATCTGTTTTGACTTGTTTTTCAA 59.828 29.630 0.00 0.00 34.61 2.69
826 837 7.464444 CGAATGCAATCTGTTTTGACTTGTTTT 60.464 33.333 0.00 0.00 0.00 2.43
851 864 0.861837 GGAGGCGTTATCTGAATGCG 59.138 55.000 0.00 0.00 33.15 4.73
852 865 1.202698 AGGGAGGCGTTATCTGAATGC 60.203 52.381 0.00 0.00 0.00 3.56
874 887 2.203126 GCTGGCCAGAAGGGATCG 60.203 66.667 37.21 7.81 40.01 3.69
882 895 3.252585 TAGGTGGGAGCTGGCCAGA 62.253 63.158 37.21 12.53 0.00 3.86
925 938 3.316588 CCTATAGAGAGCTCAAGCAACGA 59.683 47.826 17.77 0.00 45.16 3.85
927 940 3.069443 AGCCTATAGAGAGCTCAAGCAAC 59.931 47.826 17.77 0.00 45.16 4.17
928 941 3.303938 AGCCTATAGAGAGCTCAAGCAA 58.696 45.455 17.77 0.00 45.16 3.91
936 949 5.168647 TGAGGTACTAGCCTATAGAGAGC 57.831 47.826 0.00 0.00 41.55 4.09
946 959 9.473640 GTTATATACAACTTTGAGGTACTAGCC 57.526 37.037 0.00 0.00 41.55 3.93
986 999 0.735287 GTCGTTGTAGGAGAACGGGC 60.735 60.000 8.73 0.34 44.96 6.13
988 1001 0.239347 ACGTCGTTGTAGGAGAACGG 59.761 55.000 8.73 0.00 44.96 4.44
1028 1043 1.078759 GGTGAACAGAGCATCGGTCG 61.079 60.000 0.00 0.00 44.60 4.79
1032 1047 2.456119 GCCGGTGAACAGAGCATCG 61.456 63.158 1.90 0.00 42.67 3.84
1080 1095 2.922950 TACGACGGTGGTGGCAGTC 61.923 63.158 6.02 0.00 0.00 3.51
1089 1104 1.298157 TACTCACGGGTACGACGGTG 61.298 60.000 12.29 8.12 44.60 4.94
1096 1111 1.648504 GTGGCAATACTCACGGGTAC 58.351 55.000 0.00 0.00 0.00 3.34
1098 1113 1.298667 GGTGGCAATACTCACGGGT 59.701 57.895 0.00 0.00 34.93 5.28
1144 1159 9.646427 GTGGGTTAACAAAATAGCAATGAATTA 57.354 29.630 8.10 0.00 0.00 1.40
1147 1162 7.055667 TGTGGGTTAACAAAATAGCAATGAA 57.944 32.000 8.10 0.00 0.00 2.57
1166 1181 4.269183 TGAGCCTGTACATTTAATGTGGG 58.731 43.478 19.55 17.58 44.60 4.61
1170 1185 6.072286 GGATGGATGAGCCTGTACATTTAATG 60.072 42.308 3.07 3.07 37.63 1.90
1206 1221 5.525012 TCATACAGCTGCTTGATTGTCATAC 59.475 40.000 15.27 0.00 0.00 2.39
1216 1231 3.252701 GGAATCCATCATACAGCTGCTTG 59.747 47.826 15.27 11.93 0.00 4.01
1223 1238 3.906218 TCCTCCAGGAATCCATCATACAG 59.094 47.826 0.61 0.00 42.18 2.74
1258 1273 5.185249 GGTGTCTCTGTCAACTACAATAGGA 59.815 44.000 0.00 0.00 37.74 2.94
1264 1279 2.304092 ACGGTGTCTCTGTCAACTACA 58.696 47.619 0.00 0.00 36.42 2.74
1306 1321 6.876155 TGGGTTTGATAATGGAAATGACATG 58.124 36.000 0.00 0.00 0.00 3.21
1308 1323 6.098124 GGATGGGTTTGATAATGGAAATGACA 59.902 38.462 0.00 0.00 0.00 3.58
1309 1324 6.098124 TGGATGGGTTTGATAATGGAAATGAC 59.902 38.462 0.00 0.00 0.00 3.06
1316 1331 3.638160 CCAGTGGATGGGTTTGATAATGG 59.362 47.826 1.68 0.00 46.36 3.16
1317 1332 4.924305 CCAGTGGATGGGTTTGATAATG 57.076 45.455 1.68 0.00 46.36 1.90
1337 1353 6.683974 TGAAGAAATGTATTAAGAGCAGCC 57.316 37.500 0.00 0.00 0.00 4.85
1351 1367 6.968904 CGGATCACCTAACAAATGAAGAAATG 59.031 38.462 0.00 0.00 0.00 2.32
1354 1370 4.941263 CCGGATCACCTAACAAATGAAGAA 59.059 41.667 0.00 0.00 0.00 2.52
1365 1381 3.895656 CAGTTCCTATCCGGATCACCTAA 59.104 47.826 23.08 6.87 42.70 2.69
1405 1421 8.985315 TCTTGATGGTAGCATTAATTCATTCT 57.015 30.769 11.93 0.00 0.00 2.40
1414 1430 9.851686 AAGTGAATTATCTTGATGGTAGCATTA 57.148 29.630 9.14 1.47 0.00 1.90
1416 1432 8.757982 AAAGTGAATTATCTTGATGGTAGCAT 57.242 30.769 7.23 7.23 0.00 3.79
1419 1435 9.177608 TGGAAAAGTGAATTATCTTGATGGTAG 57.822 33.333 0.00 0.00 0.00 3.18
1421 1437 7.671398 ACTGGAAAAGTGAATTATCTTGATGGT 59.329 33.333 0.00 0.00 37.88 3.55
1423 1439 8.186821 GGACTGGAAAAGTGAATTATCTTGATG 58.813 37.037 0.00 0.00 40.07 3.07
1424 1440 8.112183 AGGACTGGAAAAGTGAATTATCTTGAT 58.888 33.333 0.00 0.00 40.07 2.57
1425 1441 7.461749 AGGACTGGAAAAGTGAATTATCTTGA 58.538 34.615 0.00 0.00 40.07 3.02
1426 1442 7.693969 AGGACTGGAAAAGTGAATTATCTTG 57.306 36.000 0.00 0.00 40.07 3.02
1428 1444 8.152023 ACTAGGACTGGAAAAGTGAATTATCT 57.848 34.615 0.00 0.00 40.07 1.98
1429 1445 8.669243 CAACTAGGACTGGAAAAGTGAATTATC 58.331 37.037 0.00 0.00 40.07 1.75
1430 1446 8.164070 ACAACTAGGACTGGAAAAGTGAATTAT 58.836 33.333 0.00 0.00 40.07 1.28
1431 1447 7.514721 ACAACTAGGACTGGAAAAGTGAATTA 58.485 34.615 0.00 0.00 40.07 1.40
1432 1448 6.365520 ACAACTAGGACTGGAAAAGTGAATT 58.634 36.000 0.00 0.00 40.07 2.17
1434 1450 5.367945 ACAACTAGGACTGGAAAAGTGAA 57.632 39.130 0.00 0.00 40.07 3.18
1435 1451 5.367945 AACAACTAGGACTGGAAAAGTGA 57.632 39.130 0.00 0.00 40.07 3.41
1436 1452 7.282450 AGTTTAACAACTAGGACTGGAAAAGTG 59.718 37.037 0.00 0.00 41.81 3.16
1437 1453 7.344134 AGTTTAACAACTAGGACTGGAAAAGT 58.656 34.615 0.00 0.00 41.81 2.66
1438 1454 7.307219 CGAGTTTAACAACTAGGACTGGAAAAG 60.307 40.741 0.00 0.00 43.79 2.27
1439 1455 6.480981 CGAGTTTAACAACTAGGACTGGAAAA 59.519 38.462 0.00 0.00 43.79 2.29
1443 1655 3.678548 GCGAGTTTAACAACTAGGACTGG 59.321 47.826 0.00 0.00 43.79 4.00
1455 1667 3.303791 CCTTGTTGACCAGCGAGTTTAAC 60.304 47.826 0.00 0.00 0.00 2.01
1458 1670 1.308998 CCTTGTTGACCAGCGAGTTT 58.691 50.000 0.00 0.00 0.00 2.66
1463 1675 0.320771 AGTAGCCTTGTTGACCAGCG 60.321 55.000 0.00 0.00 0.00 5.18
1465 1677 3.409026 AAGAGTAGCCTTGTTGACCAG 57.591 47.619 0.00 0.00 0.00 4.00
1477 1699 7.527084 AAGATGTAACGATTGAAAGAGTAGC 57.473 36.000 0.00 0.00 0.00 3.58
1483 1705 8.894409 TGCAAATAAGATGTAACGATTGAAAG 57.106 30.769 0.00 0.00 0.00 2.62
1510 1732 8.522830 CCAAATAGTTGAACATAGTCACCATTT 58.477 33.333 4.10 0.00 36.83 2.32
1516 1738 7.367285 GTTTGCCAAATAGTTGAACATAGTCA 58.633 34.615 4.10 0.00 36.83 3.41
1546 1768 3.956199 TCTGAAGGAAATTGCCATCCATC 59.044 43.478 4.92 0.00 38.23 3.51
1550 1772 6.478016 GCTTTAATCTGAAGGAAATTGCCATC 59.522 38.462 4.92 2.44 0.00 3.51
1554 1776 7.599998 TGAAAGCTTTAATCTGAAGGAAATTGC 59.400 33.333 12.68 0.00 0.00 3.56
1557 1779 9.082313 TCTTGAAAGCTTTAATCTGAAGGAAAT 57.918 29.630 12.68 0.00 0.00 2.17
1558 1780 8.463930 TCTTGAAAGCTTTAATCTGAAGGAAA 57.536 30.769 12.68 0.00 0.00 3.13
1592 1814 7.670364 ACAAATAAAGAAGATGGGGTTTCAAG 58.330 34.615 0.00 0.00 0.00 3.02
1595 1817 7.468141 AGACAAATAAAGAAGATGGGGTTTC 57.532 36.000 0.00 0.00 0.00 2.78
1676 1899 8.620416 AGTTTTTGATTACCCTGCAAAATTTTC 58.380 29.630 0.00 0.00 40.09 2.29
1682 1905 6.716934 TGTAGTTTTTGATTACCCTGCAAA 57.283 33.333 0.00 0.00 0.00 3.68
1690 1913 9.051027 CGTGATGTCATTGTAGTTTTTGATTAC 57.949 33.333 0.00 0.00 0.00 1.89
1696 1919 5.431420 TGCGTGATGTCATTGTAGTTTTT 57.569 34.783 0.00 0.00 0.00 1.94
1712 1935 4.399934 TGGTATACAAGTAGTGATGCGTGA 59.600 41.667 5.01 0.00 0.00 4.35
1743 1966 9.031360 GCGTTTCTCTTATGAATGTCTAATGTA 57.969 33.333 0.00 0.00 0.00 2.29
1826 2050 5.363562 TGAGAGGTAATGCATGTGAGAAT 57.636 39.130 0.00 0.00 0.00 2.40
1856 2080 7.112122 TGATGCAATAGAGACAGGTTGTATTT 58.888 34.615 0.00 0.00 29.15 1.40
1860 2084 4.558226 TGATGCAATAGAGACAGGTTGT 57.442 40.909 0.00 0.00 0.00 3.32
1861 2085 4.940046 AGTTGATGCAATAGAGACAGGTTG 59.060 41.667 0.00 0.00 0.00 3.77
1868 2092 5.880332 GGGTACAAAGTTGATGCAATAGAGA 59.120 40.000 0.00 0.00 0.00 3.10
1872 2096 6.656632 TTTGGGTACAAAGTTGATGCAATA 57.343 33.333 0.00 0.00 41.42 1.90
1914 2138 2.039216 TGAATGCAAAGGTACCTCCGAA 59.961 45.455 16.64 4.04 41.99 4.30
1926 2150 5.273674 TGTCCTTTGTTGATGAATGCAAA 57.726 34.783 0.00 0.00 0.00 3.68
1935 2159 5.291971 GCAAATGTCTTGTCCTTTGTTGAT 58.708 37.500 0.00 0.00 32.51 2.57
1952 2176 0.179156 GTCGCACAGGATGGCAAATG 60.179 55.000 0.00 0.00 43.62 2.32
1974 2198 1.153429 CAGCACTTACCGGTAGGCC 60.153 63.158 22.64 14.08 42.76 5.19
1977 2201 3.644884 CTATCCAGCACTTACCGGTAG 57.355 52.381 15.20 11.49 0.00 3.18
1993 2217 7.220030 TGGAAGAACTTTATGGATCAGCTATC 58.780 38.462 0.00 0.00 0.00 2.08
1996 2220 5.441718 TGGAAGAACTTTATGGATCAGCT 57.558 39.130 0.00 0.00 0.00 4.24
2016 2240 9.632807 GCATGTAGTTATCTCTCTTACTAATGG 57.367 37.037 0.00 0.00 0.00 3.16
2022 2246 6.961576 ACGAGCATGTAGTTATCTCTCTTAC 58.038 40.000 0.00 0.00 0.00 2.34
2025 2249 5.590663 TCAACGAGCATGTAGTTATCTCTCT 59.409 40.000 0.00 0.00 0.00 3.10
2028 2252 5.583495 AGTCAACGAGCATGTAGTTATCTC 58.417 41.667 0.00 0.00 0.00 2.75
2031 2255 6.864342 ACTTAGTCAACGAGCATGTAGTTAT 58.136 36.000 0.00 0.00 0.00 1.89
2035 2259 4.563184 GGAACTTAGTCAACGAGCATGTAG 59.437 45.833 0.00 0.00 0.00 2.74
2037 2261 3.006967 AGGAACTTAGTCAACGAGCATGT 59.993 43.478 0.00 0.00 27.25 3.21
2062 2286 5.533528 ACGTGGATATACATGTGTAGTAGCA 59.466 40.000 12.21 0.00 39.04 3.49
2063 2287 6.010294 ACGTGGATATACATGTGTAGTAGC 57.990 41.667 12.21 0.00 39.04 3.58
2065 2289 8.229253 AGAAACGTGGATATACATGTGTAGTA 57.771 34.615 13.69 0.00 40.29 1.82
2067 2291 6.641314 GGAGAAACGTGGATATACATGTGTAG 59.359 42.308 13.69 0.00 40.29 2.74
2070 2294 4.750098 GGGAGAAACGTGGATATACATGTG 59.250 45.833 13.69 0.00 40.29 3.21
2085 2309 7.996644 TGGAACTATATGTTATTGGGGAGAAAC 59.003 37.037 0.00 0.00 39.30 2.78
2086 2310 7.996644 GTGGAACTATATGTTATTGGGGAGAAA 59.003 37.037 0.00 0.00 39.30 2.52
2087 2311 7.128109 TGTGGAACTATATGTTATTGGGGAGAA 59.872 37.037 0.00 0.00 39.30 2.87
2092 2316 6.489700 TGCATGTGGAACTATATGTTATTGGG 59.510 38.462 0.00 0.00 39.30 4.12
2094 2318 7.539710 GCATGCATGTGGAACTATATGTTATTG 59.460 37.037 26.79 0.00 39.30 1.90
2107 2331 1.034356 GGCTATGCATGCATGTGGAA 58.966 50.000 37.43 19.83 37.82 3.53
2111 2335 1.407618 CTGTTGGCTATGCATGCATGT 59.592 47.619 37.43 20.22 37.82 3.21
2113 2337 1.771565 ACTGTTGGCTATGCATGCAT 58.228 45.000 33.92 33.92 40.19 3.96
2123 2348 6.785337 AACTTTAGGTTTTAACTGTTGGCT 57.215 33.333 2.69 0.00 33.90 4.75
2124 2349 7.036829 TGAAACTTTAGGTTTTAACTGTTGGC 58.963 34.615 2.69 0.00 46.77 4.52
2139 2364 6.122850 TGGCGATGAATCATGAAACTTTAG 57.877 37.500 0.00 0.00 0.00 1.85
2147 2372 7.308770 GGAATTATCTTTGGCGATGAATCATGA 60.309 37.037 0.00 0.00 0.00 3.07
2154 2379 5.192927 ACTTGGAATTATCTTTGGCGATGA 58.807 37.500 0.00 0.00 0.00 2.92
2159 2384 6.813649 GGAGAAAACTTGGAATTATCTTTGGC 59.186 38.462 0.00 0.00 0.00 4.52
2160 2385 7.039082 TGGGAGAAAACTTGGAATTATCTTTGG 60.039 37.037 0.00 0.00 0.00 3.28
2161 2386 7.895759 TGGGAGAAAACTTGGAATTATCTTTG 58.104 34.615 0.00 0.00 0.00 2.77
2164 2389 8.670521 AAATGGGAGAAAACTTGGAATTATCT 57.329 30.769 0.00 0.00 0.00 1.98
2170 2395 4.346709 GGGAAAATGGGAGAAAACTTGGAA 59.653 41.667 0.00 0.00 0.00 3.53
2175 2400 7.475299 TGTATTAGGGAAAATGGGAGAAAACT 58.525 34.615 0.00 0.00 0.00 2.66
2176 2401 7.396339 ACTGTATTAGGGAAAATGGGAGAAAAC 59.604 37.037 0.00 0.00 0.00 2.43
2184 2410 9.573166 TGAATATCACTGTATTAGGGAAAATGG 57.427 33.333 0.00 0.00 43.42 3.16
2190 2416 7.207383 CGTGTTGAATATCACTGTATTAGGGA 58.793 38.462 0.00 0.00 44.55 4.20
2197 2423 3.183754 CGCCGTGTTGAATATCACTGTA 58.816 45.455 0.00 0.00 33.07 2.74
2211 2437 0.249741 ACTTCAAGCTAACGCCGTGT 60.250 50.000 0.00 0.00 36.60 4.49
2214 2440 3.242316 GGATTAACTTCAAGCTAACGCCG 60.242 47.826 0.00 0.00 36.60 6.46
2238 2464 0.454600 GGCTGATGTCCAATGCACTG 59.545 55.000 0.00 0.00 0.00 3.66
2304 2530 9.151471 GCTATACTGTGAGTGAATAACAAGAAA 57.849 33.333 0.00 0.00 0.00 2.52
2305 2531 8.531982 AGCTATACTGTGAGTGAATAACAAGAA 58.468 33.333 0.00 0.00 0.00 2.52
2306 2532 7.976175 CAGCTATACTGTGAGTGAATAACAAGA 59.024 37.037 0.00 0.00 41.86 3.02
2330 2558 9.965824 ACCAAAAAGTAATTGAAATAGTGTCAG 57.034 29.630 0.00 0.00 0.00 3.51
2356 2585 7.807198 TGTAATGACTTGCCTGGGTATTTATA 58.193 34.615 0.00 0.00 0.00 0.98
2361 2590 3.780294 TCTGTAATGACTTGCCTGGGTAT 59.220 43.478 0.00 0.00 0.00 2.73
2364 2593 2.636830 CTCTGTAATGACTTGCCTGGG 58.363 52.381 0.00 0.00 0.00 4.45
2387 2616 6.123651 AGTGTATATCATCCCGAGGTAGATC 58.876 44.000 0.00 0.00 0.00 2.75
2394 2623 6.655425 TCAAGAGTAGTGTATATCATCCCGAG 59.345 42.308 0.00 0.00 0.00 4.63
2396 2625 6.819397 TCAAGAGTAGTGTATATCATCCCG 57.181 41.667 0.00 0.00 0.00 5.14
2411 2640 5.545063 TGAAGTGGTTGTCATCAAGAGTA 57.455 39.130 0.00 0.00 33.97 2.59
2457 2687 6.549912 ACTCTAAAATTTAACACGTGGACC 57.450 37.500 21.57 0.00 0.00 4.46
2458 2688 9.934190 TTAAACTCTAAAATTTAACACGTGGAC 57.066 29.630 21.57 0.00 0.00 4.02
2486 2716 9.108284 CCATAAATGTCAGACACACATTACATA 57.892 33.333 5.05 0.00 42.47 2.29
2492 2722 7.362056 GCTTAACCATAAATGTCAGACACACAT 60.362 37.037 5.05 0.00 38.04 3.21
2495 2726 5.414454 GGCTTAACCATAAATGTCAGACACA 59.586 40.000 5.05 0.00 37.71 3.72
2501 2732 3.699038 GCAGGGCTTAACCATAAATGTCA 59.301 43.478 0.00 0.00 42.05 3.58
2520 2751 7.769220 AGAGGTCTAAATGAAAATCATTGCAG 58.231 34.615 6.37 7.28 45.57 4.41
2522 2753 7.765307 TGAGAGGTCTAAATGAAAATCATTGC 58.235 34.615 6.37 0.00 45.57 3.56
2525 2756 9.471702 AACATGAGAGGTCTAAATGAAAATCAT 57.528 29.630 0.00 0.00 39.09 2.45
2550 2782 6.890814 ACCGGGGTTGAAATATATTGTACAAA 59.109 34.615 13.23 2.74 0.00 2.83
2556 2788 5.358442 TGTGAACCGGGGTTGAAATATATTG 59.642 40.000 8.02 0.00 38.60 1.90
2557 2789 5.358725 GTGTGAACCGGGGTTGAAATATATT 59.641 40.000 8.02 0.00 38.60 1.28
2560 2792 3.086282 GTGTGAACCGGGGTTGAAATAT 58.914 45.455 8.02 0.00 38.60 1.28
2568 2800 1.901464 GCAATGTGTGAACCGGGGT 60.901 57.895 6.32 0.00 0.00 4.95
2570 2802 0.602562 ATTGCAATGTGTGAACCGGG 59.397 50.000 12.09 0.00 0.00 5.73
2572 2804 3.058016 AGAGAATTGCAATGTGTGAACCG 60.058 43.478 13.82 0.00 0.00 4.44
2573 2805 4.022935 TGAGAGAATTGCAATGTGTGAACC 60.023 41.667 13.82 0.00 0.00 3.62
2574 2806 5.112220 TGAGAGAATTGCAATGTGTGAAC 57.888 39.130 13.82 2.93 0.00 3.18
2575 2807 4.823442 ACTGAGAGAATTGCAATGTGTGAA 59.177 37.500 13.82 0.00 0.00 3.18
2576 2808 4.392047 ACTGAGAGAATTGCAATGTGTGA 58.608 39.130 13.82 0.00 0.00 3.58
2577 2809 4.761235 ACTGAGAGAATTGCAATGTGTG 57.239 40.909 13.82 2.95 0.00 3.82
2578 2810 7.458409 AATAACTGAGAGAATTGCAATGTGT 57.542 32.000 13.82 1.76 0.00 3.72
2579 2811 8.752766 AAAATAACTGAGAGAATTGCAATGTG 57.247 30.769 13.82 1.41 0.00 3.21
2615 2847 1.256812 CAAAAGTGGGGATGTGGGAC 58.743 55.000 0.00 0.00 0.00 4.46
2620 2852 0.542702 CCAGGCAAAAGTGGGGATGT 60.543 55.000 0.00 0.00 0.00 3.06
2621 2853 0.251742 TCCAGGCAAAAGTGGGGATG 60.252 55.000 0.00 0.00 34.27 3.51
2622 2854 0.712380 ATCCAGGCAAAAGTGGGGAT 59.288 50.000 0.00 0.00 34.27 3.85
2623 2855 0.486879 AATCCAGGCAAAAGTGGGGA 59.513 50.000 0.00 0.00 34.27 4.81
2626 2858 3.320541 TGTTGTAATCCAGGCAAAAGTGG 59.679 43.478 0.00 0.00 34.87 4.00
2627 2859 4.202101 TGTGTTGTAATCCAGGCAAAAGTG 60.202 41.667 0.00 0.00 0.00 3.16
2628 2860 3.957497 TGTGTTGTAATCCAGGCAAAAGT 59.043 39.130 0.00 0.00 0.00 2.66
2629 2861 4.278170 TCTGTGTTGTAATCCAGGCAAAAG 59.722 41.667 0.00 0.00 0.00 2.27
2630 2862 4.211125 TCTGTGTTGTAATCCAGGCAAAA 58.789 39.130 0.00 0.00 0.00 2.44
2632 2864 3.500448 TCTGTGTTGTAATCCAGGCAA 57.500 42.857 0.00 0.00 0.00 4.52
2634 2866 2.098117 GCATCTGTGTTGTAATCCAGGC 59.902 50.000 0.00 0.00 0.00 4.85
2635 2867 3.127548 GTGCATCTGTGTTGTAATCCAGG 59.872 47.826 0.00 0.00 0.00 4.45
2636 2868 4.005650 AGTGCATCTGTGTTGTAATCCAG 58.994 43.478 0.00 0.00 0.00 3.86
2638 2870 4.002982 TGAGTGCATCTGTGTTGTAATCC 58.997 43.478 0.00 0.00 0.00 3.01
2639 2871 4.452114 TGTGAGTGCATCTGTGTTGTAATC 59.548 41.667 0.00 0.00 0.00 1.75
2640 2872 4.214119 GTGTGAGTGCATCTGTGTTGTAAT 59.786 41.667 0.00 0.00 0.00 1.89
2643 2875 1.942657 GTGTGAGTGCATCTGTGTTGT 59.057 47.619 0.00 0.00 0.00 3.32
2644 2876 1.265095 GGTGTGAGTGCATCTGTGTTG 59.735 52.381 0.00 0.00 0.00 3.33
2645 2877 1.597742 GGTGTGAGTGCATCTGTGTT 58.402 50.000 0.00 0.00 0.00 3.32
2646 2878 0.250467 GGGTGTGAGTGCATCTGTGT 60.250 55.000 0.00 0.00 0.00 3.72
2647 2879 0.957395 GGGGTGTGAGTGCATCTGTG 60.957 60.000 0.00 0.00 0.00 3.66
2648 2880 1.376466 GGGGTGTGAGTGCATCTGT 59.624 57.895 0.00 0.00 0.00 3.41
2649 2881 0.034767 ATGGGGTGTGAGTGCATCTG 60.035 55.000 0.00 0.00 0.00 2.90
2650 2882 1.210478 GTATGGGGTGTGAGTGCATCT 59.790 52.381 0.00 0.00 0.00 2.90
2652 2884 0.255890 GGTATGGGGTGTGAGTGCAT 59.744 55.000 0.00 0.00 0.00 3.96
2653 2885 1.682849 GGTATGGGGTGTGAGTGCA 59.317 57.895 0.00 0.00 0.00 4.57
2655 2887 1.449601 GCGGTATGGGGTGTGAGTG 60.450 63.158 0.00 0.00 0.00 3.51
2656 2888 2.666098 GGCGGTATGGGGTGTGAGT 61.666 63.158 0.00 0.00 0.00 3.41
2657 2889 2.189521 GGCGGTATGGGGTGTGAG 59.810 66.667 0.00 0.00 0.00 3.51
2658 2890 3.404438 GGGCGGTATGGGGTGTGA 61.404 66.667 0.00 0.00 0.00 3.58
2672 2989 1.065345 GGTAGTCTGGGAAAGAAGGGC 60.065 57.143 0.00 0.00 36.40 5.19
2686 3003 3.306472 AGAGGAGGACAGATGGTAGTC 57.694 52.381 0.00 0.00 0.00 2.59
2691 3008 2.896685 GTGGATAGAGGAGGACAGATGG 59.103 54.545 0.00 0.00 0.00 3.51
2729 3046 9.554724 GTTATCTAAGCGAGATGAGAAATCTAG 57.445 37.037 12.85 0.00 45.05 2.43
2773 3090 0.179702 TGCAGCCTAGCCTGATGAAG 59.820 55.000 4.58 0.00 34.77 3.02
2788 3105 3.579709 ACGAACAAGACATCTAGTGCAG 58.420 45.455 0.00 0.00 0.00 4.41
2799 3116 6.916932 ACTCACTAAAGAACTACGAACAAGAC 59.083 38.462 0.00 0.00 0.00 3.01
2800 3117 7.035840 ACTCACTAAAGAACTACGAACAAGA 57.964 36.000 0.00 0.00 0.00 3.02
2816 3133 4.851843 TCGAACCATCTAGGACTCACTAA 58.148 43.478 0.00 0.00 41.22 2.24
2836 3153 0.313672 GCTAGGAGGTGCAGATCTCG 59.686 60.000 0.00 0.00 28.76 4.04
2845 3162 2.234661 TGTGATGAACTGCTAGGAGGTG 59.765 50.000 16.34 0.00 0.00 4.00
2852 3169 4.403752 AGCATACTCTGTGATGAACTGCTA 59.596 41.667 0.00 0.00 35.81 3.49
2893 3210 1.134670 GCAGCAACGAATCCTAGGACT 60.135 52.381 15.42 1.56 0.00 3.85
2899 3216 0.729116 CGAATGCAGCAACGAATCCT 59.271 50.000 16.90 0.00 0.00 3.24
2906 3223 2.126346 GTGCCCGAATGCAGCAAC 60.126 61.111 0.00 0.00 43.02 4.17
2952 3269 3.050275 GAGGGTGAGCCACAACGC 61.050 66.667 2.50 0.00 37.02 4.84
2953 3270 2.358737 GGAGGGTGAGCCACAACG 60.359 66.667 2.50 0.00 37.02 4.10
2956 3273 1.229625 ATCAGGAGGGTGAGCCACA 60.230 57.895 2.50 0.00 35.86 4.17
2959 3276 3.235369 GGATCAGGAGGGTGAGCC 58.765 66.667 0.00 0.00 45.35 4.70
2992 3309 0.911769 TCATGTCCACCCTAGCAAGG 59.088 55.000 0.00 0.00 43.25 3.61
3011 3328 1.963515 GTTCTCCATGGCAAAGGTTGT 59.036 47.619 6.96 0.00 0.00 3.32
3037 3354 0.534412 ACTCACCTCCTTCAGATGCG 59.466 55.000 0.00 0.00 0.00 4.73
3048 3365 2.289945 ACCAAGATGAGCAACTCACCTC 60.290 50.000 0.00 0.00 43.63 3.85
3062 3379 0.324738 TCGAGCCCTCTGACCAAGAT 60.325 55.000 0.00 0.00 33.29 2.40
3076 3393 4.736896 AAGAACCCGCCGTCGAGC 62.737 66.667 0.00 0.00 38.10 5.03
3096 3413 7.458397 AGAAATTGGAGTAGTTGGACATACAA 58.542 34.615 0.00 0.00 0.00 2.41
3100 3417 5.178797 CGAGAAATTGGAGTAGTTGGACAT 58.821 41.667 0.00 0.00 0.00 3.06
3108 3425 2.691409 TGCCCGAGAAATTGGAGTAG 57.309 50.000 0.00 0.00 0.00 2.57
3110 3427 2.025887 AGAATGCCCGAGAAATTGGAGT 60.026 45.455 0.00 0.00 0.00 3.85
3116 3433 3.471680 GAGCTAAGAATGCCCGAGAAAT 58.528 45.455 0.00 0.00 0.00 2.17
3136 3453 1.330655 GGACTCGAGGCATTCTGGGA 61.331 60.000 22.31 0.00 0.00 4.37
3139 3456 2.206635 AGGGACTCGAGGCATTCTG 58.793 57.895 22.31 0.00 0.00 3.02
3157 3474 2.853542 TGCTGAGGGTGGGCAAGA 60.854 61.111 0.00 0.00 32.79 3.02
3160 3477 3.259314 ATGTGCTGAGGGTGGGCA 61.259 61.111 0.00 0.00 0.00 5.36
3161 3478 2.439156 GATGTGCTGAGGGTGGGC 60.439 66.667 0.00 0.00 0.00 5.36
3162 3479 2.273449 GGATGTGCTGAGGGTGGG 59.727 66.667 0.00 0.00 0.00 4.61
3166 3483 2.431954 AATTCAGGATGTGCTGAGGG 57.568 50.000 4.43 0.00 37.40 4.30
3168 3485 5.327091 CGTAAAAATTCAGGATGTGCTGAG 58.673 41.667 4.43 0.00 37.40 3.35
3177 3494 4.380023 CGAATTGCCCGTAAAAATTCAGGA 60.380 41.667 7.80 0.00 39.29 3.86
3180 3497 3.256136 ACCGAATTGCCCGTAAAAATTCA 59.744 39.130 7.80 0.00 39.29 2.57
3181 3498 3.610677 CACCGAATTGCCCGTAAAAATTC 59.389 43.478 0.00 0.00 37.09 2.17
3187 3504 0.035036 TGACACCGAATTGCCCGTAA 59.965 50.000 0.00 0.00 0.00 3.18
3190 3507 0.098728 GAATGACACCGAATTGCCCG 59.901 55.000 0.00 0.00 0.00 6.13
3193 3510 2.359900 AGAGGAATGACACCGAATTGC 58.640 47.619 0.00 0.00 0.00 3.56
3199 3516 0.321564 TGCCAAGAGGAATGACACCG 60.322 55.000 0.00 0.00 36.89 4.94
3216 3533 5.029807 AGAAGAAAATCTAGGCCTACTGC 57.970 43.478 8.91 1.69 40.16 4.40
3220 3537 9.449719 CTTAACAAAGAAGAAAATCTAGGCCTA 57.550 33.333 13.09 13.09 0.00 3.93
3228 3545 7.436376 ACTGCTTGCTTAACAAAGAAGAAAATC 59.564 33.333 7.20 0.00 37.96 2.17
3229 3546 7.267857 ACTGCTTGCTTAACAAAGAAGAAAAT 58.732 30.769 7.20 0.00 37.96 1.82
3234 3552 5.693814 CCTACTGCTTGCTTAACAAAGAAG 58.306 41.667 0.00 0.53 37.96 2.85
3254 3572 1.652947 AGAACGAAGGAAAGGGCCTA 58.347 50.000 6.41 0.00 37.26 3.93
3265 3583 6.787085 ACTCAAACCAGAATAAGAACGAAG 57.213 37.500 0.00 0.00 0.00 3.79
3267 3585 6.764085 TGAAACTCAAACCAGAATAAGAACGA 59.236 34.615 0.00 0.00 0.00 3.85
3303 3621 6.883217 GGATGCAAACATGGACATATAGATCT 59.117 38.462 0.00 0.00 36.35 2.75
3306 3624 6.191657 AGGATGCAAACATGGACATATAGA 57.808 37.500 0.00 0.00 36.35 1.98
3348 3666 1.524008 GAGGTGGGGAAACAAAGCGG 61.524 60.000 0.00 0.00 0.00 5.52
3366 3684 3.948473 CACTATCAGGAGGAGTTCGAAGA 59.052 47.826 0.00 0.00 0.00 2.87
3394 3712 3.754219 TGGATCCCAATGGAACAATGA 57.246 42.857 9.90 0.00 42.85 2.57
3424 3742 9.730705 CATCATGTATAGATTGGAACCAACTAT 57.269 33.333 20.62 20.62 38.88 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.