Multiple sequence alignment - TraesCS6B01G388700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G388700 chr6B 100.000 3407 0 0 1 3407 663984292 663987698 0.000000e+00 6292.0
1 TraesCS6B01G388700 chr6A 89.973 2234 156 31 871 3079 587684975 587687165 0.000000e+00 2822.0
2 TraesCS6B01G388700 chr6A 92.708 96 7 0 559 654 587645283 587645378 4.580000e-29 139.0
3 TraesCS6B01G388700 chr6D 91.288 1894 130 17 884 2766 438829817 438831686 0.000000e+00 2551.0
4 TraesCS6B01G388700 chr6D 84.716 844 68 33 1 835 438829018 438829809 0.000000e+00 787.0
5 TraesCS6B01G388700 chr6D 89.568 278 24 2 2805 3079 438831691 438831966 7.000000e-92 348.0
6 TraesCS6B01G388700 chr6D 94.083 169 10 0 3239 3407 374103605 374103773 1.210000e-64 257.0
7 TraesCS6B01G388700 chr6D 84.746 118 15 3 3081 3196 437348305 437348189 7.730000e-22 115.0
8 TraesCS6B01G388700 chr7A 79.619 1418 190 58 1032 2395 103051824 103053196 0.000000e+00 926.0
9 TraesCS6B01G388700 chr7A 91.262 103 8 1 3062 3163 86235154 86235256 4.580000e-29 139.0
10 TraesCS6B01G388700 chr7A 92.222 90 6 1 3073 3162 89911383 89911471 3.570000e-25 126.0
11 TraesCS6B01G388700 chr7D 79.352 1419 202 50 1031 2395 100884914 100886295 0.000000e+00 913.0
12 TraesCS6B01G388700 chr7D 94.083 169 8 2 3239 3407 613465477 613465311 4.360000e-64 255.0
13 TraesCS6B01G388700 chr7B 78.880 1411 210 50 1032 2395 56497751 56496382 0.000000e+00 874.0
14 TraesCS6B01G388700 chr4D 94.675 169 9 0 3239 3407 203010751 203010583 2.610000e-66 263.0
15 TraesCS6B01G388700 chr4D 94.118 170 10 0 3238 3407 396743773 396743942 3.370000e-65 259.0
16 TraesCS6B01G388700 chr4D 92.737 179 12 1 3230 3407 208556263 208556441 1.210000e-64 257.0
17 TraesCS6B01G388700 chr4D 89.189 111 9 3 3055 3162 447129487 447129597 5.930000e-28 135.0
18 TraesCS6B01G388700 chr2D 94.675 169 9 0 3239 3407 336652328 336652496 2.610000e-66 263.0
19 TraesCS6B01G388700 chr2D 93.182 176 10 2 3233 3407 399427337 399427511 1.210000e-64 257.0
20 TraesCS6B01G388700 chr2D 93.976 166 10 0 3242 3407 289159590 289159425 5.640000e-63 252.0
21 TraesCS6B01G388700 chr2D 90.909 77 2 5 3137 3211 262457386 262457313 7.780000e-17 99.0
22 TraesCS6B01G388700 chr5D 93.529 170 11 0 3238 3407 430970423 430970592 1.570000e-63 254.0
23 TraesCS6B01G388700 chr5D 92.929 99 6 1 3070 3167 456610442 456610344 3.540000e-30 143.0
24 TraesCS6B01G388700 chr3D 90.741 108 8 2 3066 3171 116159947 116160054 3.540000e-30 143.0
25 TraesCS6B01G388700 chr3D 92.857 98 6 1 3073 3170 465762341 465762245 1.270000e-29 141.0
26 TraesCS6B01G388700 chr1B 92.929 99 5 2 3078 3174 117778198 117778296 3.540000e-30 143.0
27 TraesCS6B01G388700 chr4B 92.079 101 7 1 3065 3164 567009352 567009252 1.270000e-29 141.0
28 TraesCS6B01G388700 chr1A 93.684 95 5 1 3066 3159 23859410 23859504 1.270000e-29 141.0
29 TraesCS6B01G388700 chr2B 89.610 77 3 5 3137 3211 286977145 286977218 3.620000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G388700 chr6B 663984292 663987698 3406 False 6292.000000 6292 100.000 1 3407 1 chr6B.!!$F1 3406
1 TraesCS6B01G388700 chr6A 587684975 587687165 2190 False 2822.000000 2822 89.973 871 3079 1 chr6A.!!$F2 2208
2 TraesCS6B01G388700 chr6D 438829018 438831966 2948 False 1228.666667 2551 88.524 1 3079 3 chr6D.!!$F2 3078
3 TraesCS6B01G388700 chr7A 103051824 103053196 1372 False 926.000000 926 79.619 1032 2395 1 chr7A.!!$F3 1363
4 TraesCS6B01G388700 chr7D 100884914 100886295 1381 False 913.000000 913 79.352 1031 2395 1 chr7D.!!$F1 1364
5 TraesCS6B01G388700 chr7B 56496382 56497751 1369 True 874.000000 874 78.880 1032 2395 1 chr7B.!!$R1 1363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 754 0.040067 GCTGCACTTTGTGTACTGCC 60.04 55.0 0.0 0.0 35.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 2706 0.027979 CACAACCGACACAGCAGTTG 59.972 55.0 0.0 0.0 44.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.371136 TGTGAAATAGAGAGTATGATTGTTCAC 57.629 33.333 0.00 0.00 40.79 3.18
40 41 3.489355 TGATTGTTCACAGTGAATGCCT 58.511 40.909 19.04 4.99 38.79 4.75
41 42 4.650734 TGATTGTTCACAGTGAATGCCTA 58.349 39.130 19.04 4.36 38.79 3.93
63 64 7.129425 CCTATCAGCTAAGAGGGTCCTATATT 58.871 42.308 0.00 0.00 0.00 1.28
64 65 8.282982 CCTATCAGCTAAGAGGGTCCTATATTA 58.717 40.741 0.00 0.00 0.00 0.98
126 128 8.519492 AAACAGTTGTTCACAAATATGTATGC 57.481 30.769 0.00 0.00 35.79 3.14
127 129 7.452880 ACAGTTGTTCACAAATATGTATGCT 57.547 32.000 0.00 0.00 37.82 3.79
128 130 8.560355 ACAGTTGTTCACAAATATGTATGCTA 57.440 30.769 0.00 0.00 37.82 3.49
129 131 9.177608 ACAGTTGTTCACAAATATGTATGCTAT 57.822 29.630 0.00 0.00 37.82 2.97
142 144 3.694072 TGTATGCTATTGACAAGGTTGCC 59.306 43.478 0.00 0.00 0.00 4.52
143 145 2.284754 TGCTATTGACAAGGTTGCCA 57.715 45.000 0.00 0.00 0.00 4.92
152 154 2.563798 AAGGTTGCCACATGGTGCG 61.564 57.895 0.00 0.00 37.57 5.34
157 159 4.465512 GCCACATGGTGCGCTTCG 62.466 66.667 9.73 0.00 37.57 3.79
178 182 2.090658 GTGCGTCGTGTTTGTATCTCTG 59.909 50.000 0.00 0.00 0.00 3.35
187 191 6.871492 TCGTGTTTGTATCTCTGCATTTTCTA 59.129 34.615 0.00 0.00 0.00 2.10
217 221 1.815421 CGCTATCTTTGTGCGCCCT 60.815 57.895 4.18 0.00 43.08 5.19
218 222 0.529773 CGCTATCTTTGTGCGCCCTA 60.530 55.000 4.18 0.00 43.08 3.53
220 224 2.222027 GCTATCTTTGTGCGCCCTAAT 58.778 47.619 4.18 0.00 0.00 1.73
221 225 3.399330 GCTATCTTTGTGCGCCCTAATA 58.601 45.455 4.18 0.00 0.00 0.98
222 226 3.433615 GCTATCTTTGTGCGCCCTAATAG 59.566 47.826 4.18 6.14 0.00 1.73
224 228 1.209504 TCTTTGTGCGCCCTAATAGCT 59.790 47.619 4.18 0.00 0.00 3.32
225 229 2.432874 TCTTTGTGCGCCCTAATAGCTA 59.567 45.455 4.18 0.00 0.00 3.32
253 258 2.066262 GTCGCCTGACTTTCGAATTCA 58.934 47.619 6.22 4.22 42.08 2.57
259 264 4.917887 CTGACTTTCGAATTCAGGTCAG 57.082 45.455 21.56 17.85 42.55 3.51
268 273 4.388773 TCGAATTCAGGTCAGTCGAATTTG 59.611 41.667 6.22 0.00 38.98 2.32
276 281 5.409520 CAGGTCAGTCGAATTTGATTGAAGA 59.590 40.000 19.37 0.00 36.53 2.87
281 286 7.277539 GTCAGTCGAATTTGATTGAAGAGAGAT 59.722 37.037 19.37 0.00 36.53 2.75
283 288 9.258826 CAGTCGAATTTGATTGAAGAGAGATAT 57.741 33.333 11.81 0.00 0.00 1.63
316 321 2.794820 GAAGAAGCTCGCTGGCAGGT 62.795 60.000 17.64 0.00 34.17 4.00
319 324 1.362406 GAAGCTCGCTGGCAGGTTAC 61.362 60.000 17.64 0.00 31.71 2.50
325 330 2.355115 CTGGCAGGTTACCCCACC 59.645 66.667 6.61 0.00 37.04 4.61
338 343 3.726837 ACCCCACCATCTATCTTAGGT 57.273 47.619 0.00 0.00 33.91 3.08
345 350 3.722101 ACCATCTATCTTAGGTTTGGGGG 59.278 47.826 0.00 0.00 0.00 5.40
376 382 2.349755 CGACGGTGGTGGGGATTT 59.650 61.111 0.00 0.00 0.00 2.17
381 387 3.068064 GTGGTGGGGATTTGCCGG 61.068 66.667 0.00 0.00 37.63 6.13
437 446 4.612412 GGGGGCGACGACAACACA 62.612 66.667 1.63 0.00 0.00 3.72
439 448 2.629763 GGGCGACGACAACACAAC 59.370 61.111 1.63 0.00 0.00 3.32
442 451 2.244382 CGACGACAACACAACGGC 59.756 61.111 0.00 0.00 0.00 5.68
445 454 3.266376 CGACAACACAACGGCGGT 61.266 61.111 13.24 0.00 0.00 5.68
458 467 1.221021 GGCGGTAGGAGGTTCAAGG 59.779 63.158 0.00 0.00 0.00 3.61
461 470 1.405661 GCGGTAGGAGGTTCAAGGAAG 60.406 57.143 0.00 0.00 0.00 3.46
538 547 1.222387 GTTATGCCGGTGGTAGCCA 59.778 57.895 1.90 0.00 0.00 4.75
545 554 2.590092 GGTGGTAGCCAGCGGATT 59.410 61.111 1.44 0.00 42.21 3.01
592 601 2.942376 AGTTGTGCACGTTGAATCAAGA 59.058 40.909 13.13 0.00 0.00 3.02
599 608 5.120830 GTGCACGTTGAATCAAGATCTAACT 59.879 40.000 0.00 0.00 0.00 2.24
610 619 9.474920 GAATCAAGATCTAACTGTTGAGATAGG 57.525 37.037 2.69 2.51 32.47 2.57
611 620 8.774546 ATCAAGATCTAACTGTTGAGATAGGA 57.225 34.615 2.69 6.70 32.47 2.94
612 621 8.595362 TCAAGATCTAACTGTTGAGATAGGAA 57.405 34.615 2.69 0.00 32.47 3.36
613 622 8.690884 TCAAGATCTAACTGTTGAGATAGGAAG 58.309 37.037 2.69 0.00 32.47 3.46
614 623 8.474025 CAAGATCTAACTGTTGAGATAGGAAGT 58.526 37.037 2.69 0.00 32.47 3.01
615 624 8.602472 AGATCTAACTGTTGAGATAGGAAGTT 57.398 34.615 2.69 0.00 32.47 2.66
616 625 8.474025 AGATCTAACTGTTGAGATAGGAAGTTG 58.526 37.037 2.69 0.00 32.47 3.16
617 626 7.776618 TCTAACTGTTGAGATAGGAAGTTGA 57.223 36.000 2.69 0.00 0.00 3.18
618 627 8.190326 TCTAACTGTTGAGATAGGAAGTTGAA 57.810 34.615 2.69 0.00 0.00 2.69
619 628 8.647796 TCTAACTGTTGAGATAGGAAGTTGAAA 58.352 33.333 2.69 0.00 0.00 2.69
620 629 9.273016 CTAACTGTTGAGATAGGAAGTTGAAAA 57.727 33.333 2.69 0.00 0.00 2.29
621 630 8.697507 AACTGTTGAGATAGGAAGTTGAAAAT 57.302 30.769 0.00 0.00 0.00 1.82
622 631 9.793259 AACTGTTGAGATAGGAAGTTGAAAATA 57.207 29.630 0.00 0.00 0.00 1.40
623 632 9.442047 ACTGTTGAGATAGGAAGTTGAAAATAG 57.558 33.333 0.00 0.00 0.00 1.73
624 633 9.658799 CTGTTGAGATAGGAAGTTGAAAATAGA 57.341 33.333 0.00 0.00 0.00 1.98
632 641 6.238648 AGGAAGTTGAAAATAGATTGACCGT 58.761 36.000 0.00 0.00 0.00 4.83
669 678 4.461081 GTCGACTGATCTATAGCCATTCCT 59.539 45.833 8.70 0.00 0.00 3.36
677 686 4.945246 TCTATAGCCATTCCTTTCGTGTC 58.055 43.478 0.00 0.00 0.00 3.67
690 699 4.156922 CCTTTCGTGTCTGTATCTCTCTGT 59.843 45.833 0.00 0.00 0.00 3.41
727 736 3.886549 ACTATGTACGCTATCGACAAGC 58.113 45.455 10.80 10.80 39.41 4.01
738 747 0.657312 TCGACAAGCTGCACTTTGTG 59.343 50.000 14.05 8.09 36.04 3.33
745 754 0.040067 GCTGCACTTTGTGTACTGCC 60.040 55.000 0.00 0.00 35.75 4.85
790 799 4.202959 CGCTTGCAAAATTAATCGCAGTAG 59.797 41.667 0.00 5.17 35.47 2.57
819 828 0.385390 AGTGGCGCCAAGAAAACAAG 59.615 50.000 34.66 0.00 0.00 3.16
835 844 6.640907 AGAAAACAAGCATAACGTCAATTTCC 59.359 34.615 0.00 0.00 0.00 3.13
838 847 6.422776 ACAAGCATAACGTCAATTTCCTAG 57.577 37.500 0.00 0.00 0.00 3.02
839 848 5.938125 ACAAGCATAACGTCAATTTCCTAGT 59.062 36.000 0.00 0.00 0.00 2.57
840 849 7.101054 ACAAGCATAACGTCAATTTCCTAGTA 58.899 34.615 0.00 0.00 0.00 1.82
841 850 7.064253 ACAAGCATAACGTCAATTTCCTAGTAC 59.936 37.037 0.00 0.00 0.00 2.73
842 851 6.875076 AGCATAACGTCAATTTCCTAGTACT 58.125 36.000 0.00 0.00 0.00 2.73
843 852 8.004087 AGCATAACGTCAATTTCCTAGTACTA 57.996 34.615 1.89 1.89 0.00 1.82
844 853 8.136165 AGCATAACGTCAATTTCCTAGTACTAG 58.864 37.037 21.11 21.11 0.00 2.57
852 861 3.509517 CCTAGTACTAGGGCGGTGT 57.490 57.895 33.34 0.00 46.96 4.16
853 862 1.316651 CCTAGTACTAGGGCGGTGTC 58.683 60.000 33.34 0.00 46.96 3.67
854 863 1.409241 CCTAGTACTAGGGCGGTGTCA 60.409 57.143 33.34 0.00 46.96 3.58
855 864 2.584236 CTAGTACTAGGGCGGTGTCAT 58.416 52.381 20.44 0.00 0.00 3.06
856 865 1.861982 AGTACTAGGGCGGTGTCATT 58.138 50.000 0.00 0.00 0.00 2.57
857 866 1.755380 AGTACTAGGGCGGTGTCATTC 59.245 52.381 0.00 0.00 0.00 2.67
858 867 1.479323 GTACTAGGGCGGTGTCATTCA 59.521 52.381 0.00 0.00 0.00 2.57
859 868 0.537188 ACTAGGGCGGTGTCATTCAG 59.463 55.000 0.00 0.00 0.00 3.02
860 869 0.537188 CTAGGGCGGTGTCATTCAGT 59.463 55.000 0.00 0.00 0.00 3.41
861 870 0.535335 TAGGGCGGTGTCATTCAGTC 59.465 55.000 0.00 0.00 0.00 3.51
862 871 1.003839 GGGCGGTGTCATTCAGTCA 60.004 57.895 0.00 0.00 0.00 3.41
863 872 0.392998 GGGCGGTGTCATTCAGTCAT 60.393 55.000 0.00 0.00 0.00 3.06
864 873 1.453155 GGCGGTGTCATTCAGTCATT 58.547 50.000 0.00 0.00 0.00 2.57
865 874 1.131126 GGCGGTGTCATTCAGTCATTG 59.869 52.381 0.00 0.00 0.00 2.82
866 875 1.806542 GCGGTGTCATTCAGTCATTGT 59.193 47.619 0.00 0.00 0.00 2.71
867 876 2.413239 GCGGTGTCATTCAGTCATTGTG 60.413 50.000 0.00 0.00 0.00 3.33
868 877 2.413239 CGGTGTCATTCAGTCATTGTGC 60.413 50.000 0.00 0.00 0.00 4.57
869 878 2.816087 GGTGTCATTCAGTCATTGTGCT 59.184 45.455 0.00 0.00 0.00 4.40
881 890 1.782201 ATTGTGCTGGAGCTGGTGGA 61.782 55.000 0.00 0.00 42.66 4.02
882 891 2.359230 GTGCTGGAGCTGGTGGAC 60.359 66.667 0.00 0.00 42.66 4.02
919 928 2.181445 CTGCTCTGCTGGCCTTCTCA 62.181 60.000 3.32 0.00 0.00 3.27
920 929 1.744741 GCTCTGCTGGCCTTCTCAC 60.745 63.158 3.32 0.00 0.00 3.51
980 995 1.067582 CCCCAGTACGATTCGAGGC 59.932 63.158 13.95 2.37 0.00 4.70
983 998 0.456221 CCAGTACGATTCGAGGCAGT 59.544 55.000 13.95 0.00 0.00 4.40
1242 1269 2.035442 GCTGTTCAAGGCGTCCCTC 61.035 63.158 0.00 0.00 41.90 4.30
1560 1614 0.804989 GCTCCAGCTACGTGCATTTT 59.195 50.000 0.00 0.00 45.94 1.82
1563 1617 2.226330 TCCAGCTACGTGCATTTTGTT 58.774 42.857 0.00 0.00 45.94 2.83
1617 1677 1.080093 CGCTGACAAGAAGGCGGTA 60.080 57.895 0.00 0.00 43.25 4.02
1732 1801 2.571216 CGGTTGGACGACTGGGACT 61.571 63.158 0.00 0.00 35.47 3.85
1785 1854 2.659244 GCGACGTTCCGGTTCACA 60.659 61.111 0.00 0.00 0.00 3.58
1824 1893 4.415332 GGGAAGCGCGTCGAGTCA 62.415 66.667 17.05 0.00 0.00 3.41
1827 1896 1.226435 GAAGCGCGTCGAGTCAGAT 60.226 57.895 7.77 0.00 0.00 2.90
2025 2097 1.227823 CCTGTGCCACGTGGAGAAA 60.228 57.895 38.30 17.18 37.39 2.52
2028 2100 0.396435 TGTGCCACGTGGAGAAAGAT 59.604 50.000 38.30 0.00 37.39 2.40
2033 2105 2.283298 CCACGTGGAGAAAGATGATGG 58.717 52.381 31.31 0.00 37.39 3.51
2040 2112 3.452264 TGGAGAAAGATGATGGTCACGAT 59.548 43.478 0.00 0.00 0.00 3.73
2486 2567 2.260434 GAGCGCAACGGTAGACCA 59.740 61.111 11.47 0.00 37.83 4.02
2532 2614 4.326009 ACACAAAACAAAAACATGACGAGC 59.674 37.500 0.00 0.00 0.00 5.03
2610 2692 1.040646 GGACACTCCTGTCTGTGTGA 58.959 55.000 3.41 0.00 45.94 3.58
2620 2702 0.389037 GTCTGTGTGATGCAGAGCGA 60.389 55.000 0.00 0.00 42.80 4.93
2624 2706 2.382746 TGTGATGCAGAGCGAACGC 61.383 57.895 11.31 11.31 42.33 4.84
2638 2720 2.967076 ACGCAACTGCTGTGTCGG 60.967 61.111 17.46 3.76 45.91 4.79
2648 2730 2.139917 TGCTGTGTCGGTTGTGAATAC 58.860 47.619 0.00 0.00 0.00 1.89
2661 2750 6.759356 CGGTTGTGAATACCAATCATGTACTA 59.241 38.462 0.00 0.00 35.31 1.82
2662 2751 7.042725 CGGTTGTGAATACCAATCATGTACTAG 60.043 40.741 0.00 0.00 35.31 2.57
2663 2752 7.769044 GGTTGTGAATACCAATCATGTACTAGT 59.231 37.037 0.00 0.00 35.67 2.57
2664 2753 8.604035 GTTGTGAATACCAATCATGTACTAGTG 58.396 37.037 5.39 0.00 0.00 2.74
2679 2768 5.365605 TGTACTAGTGGCCATAGCACTTATT 59.634 40.000 9.72 0.00 42.56 1.40
2709 2798 0.596083 TGATTGCAACGGCGTTTTGG 60.596 50.000 24.49 13.45 45.35 3.28
2713 2802 2.234335 GCAACGGCGTTTTGGTTGG 61.234 57.895 24.49 11.10 40.93 3.77
2714 2803 1.590259 CAACGGCGTTTTGGTTGGG 60.590 57.895 24.49 5.23 37.86 4.12
2715 2804 2.053277 AACGGCGTTTTGGTTGGGT 61.053 52.632 21.19 0.00 0.00 4.51
2716 2805 1.605971 AACGGCGTTTTGGTTGGGTT 61.606 50.000 21.19 0.00 0.00 4.11
2717 2806 1.590259 CGGCGTTTTGGTTGGGTTG 60.590 57.895 0.00 0.00 0.00 3.77
2766 2862 2.884012 ACTTTTCATGAATGCACGACCA 59.116 40.909 9.40 0.00 0.00 4.02
2773 2869 1.718757 GAATGCACGACCAGATGCCC 61.719 60.000 0.00 0.00 41.33 5.36
2789 2885 1.026718 GCCCGGAATGGACAACAGAG 61.027 60.000 0.73 0.00 42.00 3.35
2795 2891 3.118775 CGGAATGGACAACAGAGATACCA 60.119 47.826 0.00 0.00 0.00 3.25
2796 2892 4.192317 GGAATGGACAACAGAGATACCAC 58.808 47.826 0.00 0.00 0.00 4.16
2797 2893 3.914426 ATGGACAACAGAGATACCACC 57.086 47.619 0.00 0.00 0.00 4.61
2840 2936 4.451096 GCACTTCGAAACTCCAAGATTACA 59.549 41.667 0.00 0.00 0.00 2.41
2849 2945 5.886960 ACTCCAAGATTACAGTCAAATGC 57.113 39.130 0.00 0.00 0.00 3.56
2858 2954 7.365741 AGATTACAGTCAAATGCTTCAAACAG 58.634 34.615 0.00 0.00 0.00 3.16
2859 2955 6.691754 TTACAGTCAAATGCTTCAAACAGA 57.308 33.333 0.00 0.00 0.00 3.41
2873 2969 6.035112 GCTTCAAACAGATAAGTCTAAGTCCG 59.965 42.308 0.00 0.00 32.09 4.79
2936 3032 1.918609 GACACGAATACTCAAGTCGGC 59.081 52.381 0.00 0.00 39.07 5.54
2949 3045 1.048601 AGTCGGCCATGTACCCTATG 58.951 55.000 2.24 0.00 0.00 2.23
2979 3075 0.955428 TCGCCCATGTTTGTCTCTGC 60.955 55.000 0.00 0.00 0.00 4.26
2983 3079 2.352127 GCCCATGTTTGTCTCTGCTTTC 60.352 50.000 0.00 0.00 0.00 2.62
2985 3081 3.190118 CCCATGTTTGTCTCTGCTTTCTC 59.810 47.826 0.00 0.00 0.00 2.87
2994 3094 0.392706 TCTGCTTTCTCAAGTCCGCA 59.607 50.000 0.00 0.00 31.86 5.69
3000 3100 0.319900 TTCTCAAGTCCGCAGCACTC 60.320 55.000 0.00 0.00 0.00 3.51
3014 3114 5.050091 CCGCAGCACTCCAAAATAACTATAG 60.050 44.000 0.00 0.00 0.00 1.31
3036 3136 5.064558 AGATGAGCATAATCCTTCAAGCAG 58.935 41.667 0.00 0.00 0.00 4.24
3046 3146 4.882671 TCCTTCAAGCAGCGAAAATATC 57.117 40.909 0.00 0.00 0.00 1.63
3104 3204 8.667076 TTCCCTCCGTAAACTAATATAAAAGC 57.333 34.615 0.00 0.00 0.00 3.51
3105 3205 7.794041 TCCCTCCGTAAACTAATATAAAAGCA 58.206 34.615 0.00 0.00 0.00 3.91
3106 3206 8.434392 TCCCTCCGTAAACTAATATAAAAGCAT 58.566 33.333 0.00 0.00 0.00 3.79
3107 3207 9.063615 CCCTCCGTAAACTAATATAAAAGCATT 57.936 33.333 0.00 0.00 0.00 3.56
3156 3256 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3157 3257 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3158 3258 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3159 3259 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3160 3260 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3167 3267 5.678955 AGTTTACAGAGGGAGTACAATCC 57.321 43.478 0.00 0.00 38.76 3.01
3168 3268 5.091552 AGTTTACAGAGGGAGTACAATCCA 58.908 41.667 3.75 0.00 41.52 3.41
3169 3269 5.546499 AGTTTACAGAGGGAGTACAATCCAA 59.454 40.000 3.75 0.00 41.52 3.53
3170 3270 6.043938 AGTTTACAGAGGGAGTACAATCCAAA 59.956 38.462 3.75 0.00 41.52 3.28
3171 3271 4.287766 ACAGAGGGAGTACAATCCAAAC 57.712 45.455 3.75 0.00 41.52 2.93
3172 3272 3.650942 ACAGAGGGAGTACAATCCAAACA 59.349 43.478 3.75 0.00 41.52 2.83
3173 3273 4.289672 ACAGAGGGAGTACAATCCAAACAT 59.710 41.667 3.75 0.00 41.52 2.71
3174 3274 5.222130 ACAGAGGGAGTACAATCCAAACATT 60.222 40.000 3.75 0.00 41.52 2.71
3175 3275 6.012858 ACAGAGGGAGTACAATCCAAACATTA 60.013 38.462 3.75 0.00 41.52 1.90
3176 3276 6.884295 CAGAGGGAGTACAATCCAAACATTAA 59.116 38.462 3.75 0.00 41.52 1.40
3177 3277 7.066284 CAGAGGGAGTACAATCCAAACATTAAG 59.934 40.741 3.75 0.00 41.52 1.85
3178 3278 6.790319 AGGGAGTACAATCCAAACATTAAGT 58.210 36.000 3.75 0.00 41.52 2.24
3179 3279 7.238710 AGGGAGTACAATCCAAACATTAAGTT 58.761 34.615 3.75 0.00 41.52 2.66
3238 3338 9.799106 ATATTCTAGTTGTCCCCTTTAATCATG 57.201 33.333 0.00 0.00 0.00 3.07
3239 3339 6.001449 TCTAGTTGTCCCCTTTAATCATGG 57.999 41.667 0.00 0.00 0.00 3.66
3240 3340 4.946160 AGTTGTCCCCTTTAATCATGGA 57.054 40.909 0.00 0.00 0.00 3.41
3241 3341 4.600062 AGTTGTCCCCTTTAATCATGGAC 58.400 43.478 0.00 0.00 44.57 4.02
3242 3342 3.275617 TGTCCCCTTTAATCATGGACG 57.724 47.619 0.00 0.00 46.73 4.79
3243 3343 1.947456 GTCCCCTTTAATCATGGACGC 59.053 52.381 0.00 0.00 36.47 5.19
3244 3344 1.133915 TCCCCTTTAATCATGGACGCC 60.134 52.381 0.00 0.00 0.00 5.68
3245 3345 0.944386 CCCTTTAATCATGGACGCCG 59.056 55.000 0.00 0.00 0.00 6.46
3246 3346 1.474320 CCCTTTAATCATGGACGCCGA 60.474 52.381 0.00 0.00 0.00 5.54
3247 3347 2.494059 CCTTTAATCATGGACGCCGAT 58.506 47.619 0.00 0.00 0.00 4.18
3248 3348 3.556213 CCCTTTAATCATGGACGCCGATA 60.556 47.826 0.00 0.00 0.00 2.92
3249 3349 4.253685 CCTTTAATCATGGACGCCGATAT 58.746 43.478 0.00 0.00 0.00 1.63
3250 3350 4.695455 CCTTTAATCATGGACGCCGATATT 59.305 41.667 0.00 0.00 0.00 1.28
3251 3351 5.163854 CCTTTAATCATGGACGCCGATATTC 60.164 44.000 0.00 0.00 0.00 1.75
3252 3352 3.401033 AATCATGGACGCCGATATTCA 57.599 42.857 0.00 0.00 0.00 2.57
3253 3353 2.148916 TCATGGACGCCGATATTCAC 57.851 50.000 0.00 0.00 0.00 3.18
3254 3354 1.148310 CATGGACGCCGATATTCACC 58.852 55.000 0.00 0.00 0.00 4.02
3255 3355 0.756294 ATGGACGCCGATATTCACCA 59.244 50.000 0.00 0.00 0.00 4.17
3256 3356 0.179094 TGGACGCCGATATTCACCAC 60.179 55.000 0.00 0.00 0.00 4.16
3257 3357 0.179094 GGACGCCGATATTCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
3258 3358 0.928229 GACGCCGATATTCACCACAC 59.072 55.000 0.00 0.00 0.00 3.82
3259 3359 0.804544 ACGCCGATATTCACCACACG 60.805 55.000 0.00 0.00 0.00 4.49
3260 3360 0.804544 CGCCGATATTCACCACACGT 60.805 55.000 0.00 0.00 0.00 4.49
3261 3361 0.650512 GCCGATATTCACCACACGTG 59.349 55.000 15.48 15.48 44.50 4.49
3262 3362 2.004583 CCGATATTCACCACACGTGT 57.995 50.000 17.22 17.22 43.51 4.49
3263 3363 1.658596 CCGATATTCACCACACGTGTG 59.341 52.381 36.13 36.13 43.51 3.82
3276 3376 5.794687 CACACGTGTGGTATATTTGACAT 57.205 39.130 35.65 0.00 42.10 3.06
3277 3377 5.559227 CACACGTGTGGTATATTTGACATG 58.441 41.667 35.65 8.87 42.10 3.21
3278 3378 4.094294 ACACGTGTGGTATATTTGACATGC 59.906 41.667 22.71 0.00 34.19 4.06
3279 3379 3.308595 ACGTGTGGTATATTTGACATGCG 59.691 43.478 0.00 0.00 0.00 4.73
3280 3380 3.617669 GTGTGGTATATTTGACATGCGC 58.382 45.455 0.00 0.00 0.00 6.09
3281 3381 2.616376 TGTGGTATATTTGACATGCGCC 59.384 45.455 4.18 0.00 0.00 6.53
3282 3382 2.031157 GTGGTATATTTGACATGCGCCC 60.031 50.000 4.18 0.00 0.00 6.13
3283 3383 2.226330 GGTATATTTGACATGCGCCCA 58.774 47.619 4.18 0.00 0.00 5.36
3284 3384 2.031157 GGTATATTTGACATGCGCCCAC 60.031 50.000 4.18 0.00 0.00 4.61
3285 3385 1.761449 ATATTTGACATGCGCCCACA 58.239 45.000 4.18 0.00 0.00 4.17
3286 3386 0.808125 TATTTGACATGCGCCCACAC 59.192 50.000 4.18 0.00 0.00 3.82
3287 3387 1.177895 ATTTGACATGCGCCCACACA 61.178 50.000 4.18 0.00 0.00 3.72
3288 3388 1.177895 TTTGACATGCGCCCACACAT 61.178 50.000 4.18 0.00 0.00 3.21
3289 3389 1.585267 TTGACATGCGCCCACACATC 61.585 55.000 4.18 0.00 0.00 3.06
3290 3390 3.099619 GACATGCGCCCACACATCG 62.100 63.158 4.18 0.00 0.00 3.84
3291 3391 3.126879 CATGCGCCCACACATCGT 61.127 61.111 4.18 0.00 0.00 3.73
3292 3392 3.126879 ATGCGCCCACACATCGTG 61.127 61.111 4.18 0.00 45.92 4.35
3294 3394 3.788766 GCGCCCACACATCGTGTC 61.789 66.667 0.00 0.00 43.92 3.67
3295 3395 2.048222 CGCCCACACATCGTGTCT 60.048 61.111 0.00 0.00 43.92 3.41
3296 3396 2.382746 CGCCCACACATCGTGTCTG 61.383 63.158 0.00 0.00 43.92 3.51
3297 3397 2.034879 GCCCACACATCGTGTCTGG 61.035 63.158 0.00 2.74 43.92 3.86
3298 3398 1.371183 CCCACACATCGTGTCTGGT 59.629 57.895 10.02 0.00 43.92 4.00
3299 3399 0.950555 CCCACACATCGTGTCTGGTG 60.951 60.000 10.02 0.00 43.92 4.17
3300 3400 0.249868 CCACACATCGTGTCTGGTGT 60.250 55.000 0.00 0.00 43.92 4.16
3301 3401 3.289128 ACACATCGTGTCTGGTGTG 57.711 52.632 5.64 5.64 43.92 3.82
3302 3402 0.750249 ACACATCGTGTCTGGTGTGA 59.250 50.000 13.55 0.00 43.92 3.58
3303 3403 1.269778 ACACATCGTGTCTGGTGTGAG 60.270 52.381 13.55 0.00 43.92 3.51
3304 3404 0.319900 ACATCGTGTCTGGTGTGAGC 60.320 55.000 0.00 0.00 0.00 4.26
3305 3405 0.319813 CATCGTGTCTGGTGTGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
3306 3406 0.037882 ATCGTGTCTGGTGTGAGCAG 60.038 55.000 0.00 0.00 44.57 4.24
3307 3407 1.665916 CGTGTCTGGTGTGAGCAGG 60.666 63.158 3.13 0.00 43.47 4.85
3308 3408 1.748403 GTGTCTGGTGTGAGCAGGA 59.252 57.895 3.13 0.00 43.47 3.86
3309 3409 0.320247 GTGTCTGGTGTGAGCAGGAG 60.320 60.000 3.13 0.00 43.47 3.69
3310 3410 1.294780 GTCTGGTGTGAGCAGGAGG 59.705 63.158 3.13 0.00 43.47 4.30
3311 3411 2.046507 CTGGTGTGAGCAGGAGGC 60.047 66.667 0.00 0.00 39.87 4.70
3320 3420 2.203266 GCAGGAGGCAGCCCATAC 60.203 66.667 8.22 0.00 43.97 2.39
3321 3421 2.109799 CAGGAGGCAGCCCATACG 59.890 66.667 8.22 0.00 0.00 3.06
3322 3422 3.164269 AGGAGGCAGCCCATACGG 61.164 66.667 8.22 0.00 0.00 4.02
3332 3432 3.889227 CCATACGGGCTGTGTGTG 58.111 61.111 19.95 10.91 37.96 3.82
3333 3433 1.745115 CCATACGGGCTGTGTGTGG 60.745 63.158 19.95 15.38 41.31 4.17
3334 3434 1.295101 CATACGGGCTGTGTGTGGA 59.705 57.895 14.41 0.00 35.19 4.02
3335 3435 1.019278 CATACGGGCTGTGTGTGGAC 61.019 60.000 14.41 0.00 35.19 4.02
3336 3436 2.501223 ATACGGGCTGTGTGTGGACG 62.501 60.000 9.79 0.00 0.00 4.79
3338 3438 3.936203 GGGCTGTGTGTGGACGGA 61.936 66.667 0.00 0.00 0.00 4.69
3339 3439 2.665185 GGCTGTGTGTGGACGGAC 60.665 66.667 0.00 0.00 0.00 4.79
3340 3440 2.108157 GCTGTGTGTGGACGGACA 59.892 61.111 0.00 0.00 0.00 4.02
3341 3441 1.301716 GCTGTGTGTGGACGGACAT 60.302 57.895 0.00 0.00 0.00 3.06
3342 3442 0.884704 GCTGTGTGTGGACGGACATT 60.885 55.000 0.00 0.00 0.00 2.71
3343 3443 1.606994 GCTGTGTGTGGACGGACATTA 60.607 52.381 0.00 0.00 0.00 1.90
3344 3444 2.337583 CTGTGTGTGGACGGACATTAG 58.662 52.381 0.00 0.00 0.00 1.73
3345 3445 1.964933 TGTGTGTGGACGGACATTAGA 59.035 47.619 0.00 0.00 0.00 2.10
3346 3446 2.365941 TGTGTGTGGACGGACATTAGAA 59.634 45.455 0.00 0.00 0.00 2.10
3347 3447 2.735134 GTGTGTGGACGGACATTAGAAC 59.265 50.000 0.00 0.00 0.00 3.01
3348 3448 2.631062 TGTGTGGACGGACATTAGAACT 59.369 45.455 0.00 0.00 0.00 3.01
3349 3449 2.993899 GTGTGGACGGACATTAGAACTG 59.006 50.000 0.00 0.00 0.00 3.16
3350 3450 2.000447 GTGGACGGACATTAGAACTGC 59.000 52.381 0.00 0.00 0.00 4.40
3351 3451 1.066430 TGGACGGACATTAGAACTGCC 60.066 52.381 0.00 0.00 0.00 4.85
3352 3452 1.653151 GACGGACATTAGAACTGCCC 58.347 55.000 0.00 0.00 0.00 5.36
3353 3453 0.981183 ACGGACATTAGAACTGCCCA 59.019 50.000 0.00 0.00 0.00 5.36
3354 3454 1.338769 ACGGACATTAGAACTGCCCAC 60.339 52.381 0.00 0.00 0.00 4.61
3355 3455 1.338674 CGGACATTAGAACTGCCCACA 60.339 52.381 0.00 0.00 0.00 4.17
3356 3456 2.084546 GGACATTAGAACTGCCCACAC 58.915 52.381 0.00 0.00 0.00 3.82
3357 3457 1.732259 GACATTAGAACTGCCCACACG 59.268 52.381 0.00 0.00 0.00 4.49
3358 3458 1.071699 ACATTAGAACTGCCCACACGT 59.928 47.619 0.00 0.00 0.00 4.49
3359 3459 1.464608 CATTAGAACTGCCCACACGTG 59.535 52.381 15.48 15.48 0.00 4.49
3360 3460 0.466543 TTAGAACTGCCCACACGTGT 59.533 50.000 17.22 17.22 0.00 4.49
3361 3461 0.249699 TAGAACTGCCCACACGTGTG 60.250 55.000 36.13 36.13 45.23 3.82
3374 3474 2.667199 GTGTGGGCGCGGTTACTT 60.667 61.111 8.83 0.00 0.00 2.24
3375 3475 2.357760 TGTGGGCGCGGTTACTTC 60.358 61.111 8.83 0.00 0.00 3.01
3376 3476 3.484547 GTGGGCGCGGTTACTTCG 61.485 66.667 8.83 0.00 0.00 3.79
3377 3477 3.993584 TGGGCGCGGTTACTTCGT 61.994 61.111 8.83 0.00 0.00 3.85
3378 3478 3.484547 GGGCGCGGTTACTTCGTG 61.485 66.667 8.83 0.00 40.58 4.35
3381 3481 2.735478 CGCGGTTACTTCGTGCCA 60.735 61.111 0.00 0.00 0.00 4.92
3382 3482 2.858158 GCGGTTACTTCGTGCCAC 59.142 61.111 0.00 0.00 0.00 5.01
3383 3483 1.957186 GCGGTTACTTCGTGCCACA 60.957 57.895 0.00 0.00 0.00 4.17
3384 3484 1.857364 CGGTTACTTCGTGCCACAC 59.143 57.895 0.00 0.00 0.00 3.82
3393 3493 3.522731 GTGCCACACGCCCAACAA 61.523 61.111 0.00 0.00 36.24 2.83
3394 3494 3.215568 TGCCACACGCCCAACAAG 61.216 61.111 0.00 0.00 36.24 3.16
3395 3495 3.216292 GCCACACGCCCAACAAGT 61.216 61.111 0.00 0.00 0.00 3.16
3396 3496 1.894756 GCCACACGCCCAACAAGTA 60.895 57.895 0.00 0.00 0.00 2.24
3397 3497 1.946267 CCACACGCCCAACAAGTAC 59.054 57.895 0.00 0.00 0.00 2.73
3398 3498 0.534203 CCACACGCCCAACAAGTACT 60.534 55.000 0.00 0.00 0.00 2.73
3399 3499 1.270412 CCACACGCCCAACAAGTACTA 60.270 52.381 0.00 0.00 0.00 1.82
3400 3500 1.796459 CACACGCCCAACAAGTACTAC 59.204 52.381 0.00 0.00 0.00 2.73
3401 3501 1.690352 ACACGCCCAACAAGTACTACT 59.310 47.619 0.00 0.00 0.00 2.57
3402 3502 2.288640 ACACGCCCAACAAGTACTACTC 60.289 50.000 0.00 0.00 0.00 2.59
3403 3503 1.965643 ACGCCCAACAAGTACTACTCA 59.034 47.619 0.00 0.00 0.00 3.41
3404 3504 2.565834 ACGCCCAACAAGTACTACTCAT 59.434 45.455 0.00 0.00 0.00 2.90
3405 3505 3.187700 CGCCCAACAAGTACTACTCATC 58.812 50.000 0.00 0.00 0.00 2.92
3406 3506 3.119101 CGCCCAACAAGTACTACTCATCT 60.119 47.826 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.591792 CTGTGAACAATCATACTCTCTATTTCA 57.408 33.333 0.00 0.00 38.01 2.69
29 30 4.953667 TCTTAGCTGATAGGCATTCACTG 58.046 43.478 0.00 0.00 34.17 3.66
40 41 8.847816 ACTAATATAGGACCCTCTTAGCTGATA 58.152 37.037 0.00 0.00 0.00 2.15
41 42 7.617723 CACTAATATAGGACCCTCTTAGCTGAT 59.382 40.741 0.00 0.00 0.00 2.90
63 64 0.623723 GCTTTGGATGGGTCCCACTA 59.376 55.000 14.57 2.40 44.41 2.74
64 65 1.384191 GCTTTGGATGGGTCCCACT 59.616 57.895 14.57 2.24 44.41 4.00
114 116 9.454585 CAACCTTGTCAATAGCATACATATTTG 57.545 33.333 0.00 0.00 0.00 2.32
124 126 1.885887 GTGGCAACCTTGTCAATAGCA 59.114 47.619 0.00 0.00 45.39 3.49
125 127 1.885887 TGTGGCAACCTTGTCAATAGC 59.114 47.619 0.00 0.00 45.39 2.97
126 128 3.119388 CCATGTGGCAACCTTGTCAATAG 60.119 47.826 0.00 0.00 45.39 1.73
127 129 2.824936 CCATGTGGCAACCTTGTCAATA 59.175 45.455 0.00 0.00 45.39 1.90
128 130 1.619827 CCATGTGGCAACCTTGTCAAT 59.380 47.619 0.00 0.00 45.39 2.57
129 131 1.039068 CCATGTGGCAACCTTGTCAA 58.961 50.000 0.00 0.00 45.39 3.18
130 132 0.106268 ACCATGTGGCAACCTTGTCA 60.106 50.000 0.00 0.00 41.08 3.58
142 144 2.174107 CACGAAGCGCACCATGTG 59.826 61.111 11.47 7.04 36.51 3.21
143 145 3.726517 GCACGAAGCGCACCATGT 61.727 61.111 11.47 0.00 34.62 3.21
152 154 1.717728 CAAACACGACGCACGAAGC 60.718 57.895 9.43 0.00 45.77 3.86
157 159 2.090658 CAGAGATACAAACACGACGCAC 59.909 50.000 0.00 0.00 0.00 5.34
213 217 2.966516 ACTGACCTGTAGCTATTAGGGC 59.033 50.000 23.28 21.98 40.18 5.19
214 218 3.253677 CGACTGACCTGTAGCTATTAGGG 59.746 52.174 23.28 14.07 35.89 3.53
215 219 3.304794 GCGACTGACCTGTAGCTATTAGG 60.305 52.174 19.83 19.83 36.03 2.69
217 221 2.621998 GGCGACTGACCTGTAGCTATTA 59.378 50.000 0.00 0.00 38.36 0.98
218 222 1.409427 GGCGACTGACCTGTAGCTATT 59.591 52.381 0.00 0.00 38.36 1.73
220 224 0.034380 AGGCGACTGACCTGTAGCTA 60.034 55.000 0.00 0.00 41.13 3.32
221 225 1.304547 AGGCGACTGACCTGTAGCT 60.305 57.895 0.00 0.00 41.13 3.32
222 226 3.289525 AGGCGACTGACCTGTAGC 58.710 61.111 0.00 4.16 41.13 3.58
253 258 5.551233 TCTTCAATCAAATTCGACTGACCT 58.449 37.500 0.00 0.00 0.00 3.85
268 273 7.093992 CCCTTCGGTTATATCTCTCTTCAATC 58.906 42.308 0.00 0.00 0.00 2.67
276 281 3.401683 TCCTCCCCTTCGGTTATATCTCT 59.598 47.826 0.00 0.00 0.00 3.10
281 286 3.693526 TCTTCCTCCCCTTCGGTTATA 57.306 47.619 0.00 0.00 0.00 0.98
283 288 2.185387 CTTCTTCCTCCCCTTCGGTTA 58.815 52.381 0.00 0.00 0.00 2.85
288 293 0.176910 CGAGCTTCTTCCTCCCCTTC 59.823 60.000 0.00 0.00 0.00 3.46
289 294 1.904990 GCGAGCTTCTTCCTCCCCTT 61.905 60.000 0.00 0.00 0.00 3.95
316 321 5.166013 ACCTAAGATAGATGGTGGGGTAA 57.834 43.478 0.00 0.00 0.00 2.85
319 324 4.446311 CCAAACCTAAGATAGATGGTGGGG 60.446 50.000 0.00 0.00 32.53 4.96
325 330 4.446311 CCACCCCCAAACCTAAGATAGATG 60.446 50.000 0.00 0.00 0.00 2.90
359 365 2.038269 CAAATCCCCACCACCGTCG 61.038 63.158 0.00 0.00 0.00 5.12
361 367 2.282887 GCAAATCCCCACCACCGT 60.283 61.111 0.00 0.00 0.00 4.83
402 410 2.925262 CGCCATCCCTCTAGCTCCG 61.925 68.421 0.00 0.00 0.00 4.63
433 442 2.654877 CTCCTACCGCCGTTGTGT 59.345 61.111 0.00 0.00 0.00 3.72
437 446 1.474332 TTGAACCTCCTACCGCCGTT 61.474 55.000 0.00 0.00 0.00 4.44
439 448 1.153628 CTTGAACCTCCTACCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
442 451 1.207329 CCTTCCTTGAACCTCCTACCG 59.793 57.143 0.00 0.00 0.00 4.02
445 454 1.286248 GCCCTTCCTTGAACCTCCTA 58.714 55.000 0.00 0.00 0.00 2.94
519 528 1.525306 GGCTACCACCGGCATAACC 60.525 63.158 0.00 0.00 0.00 2.85
520 529 0.814010 CTGGCTACCACCGGCATAAC 60.814 60.000 0.00 0.00 36.31 1.89
521 530 1.524961 CTGGCTACCACCGGCATAA 59.475 57.895 0.00 0.00 36.31 1.90
522 531 3.226242 CTGGCTACCACCGGCATA 58.774 61.111 0.00 0.00 36.31 3.14
527 536 3.385749 AATCCGCTGGCTACCACCG 62.386 63.158 0.00 0.00 32.96 4.94
528 537 1.819632 CAATCCGCTGGCTACCACC 60.820 63.158 0.00 0.00 0.00 4.61
529 538 1.819632 CCAATCCGCTGGCTACCAC 60.820 63.158 0.00 0.00 0.00 4.16
530 539 2.589540 CCAATCCGCTGGCTACCA 59.410 61.111 0.00 0.00 0.00 3.25
531 540 2.203209 CCCAATCCGCTGGCTACC 60.203 66.667 0.00 0.00 34.88 3.18
532 541 2.056906 ATCCCCAATCCGCTGGCTAC 62.057 60.000 0.00 0.00 34.88 3.58
533 542 0.472925 TATCCCCAATCCGCTGGCTA 60.473 55.000 0.00 0.00 34.88 3.93
534 543 1.770110 TATCCCCAATCCGCTGGCT 60.770 57.895 0.00 0.00 34.88 4.75
538 547 0.898320 CGATCTATCCCCAATCCGCT 59.102 55.000 0.00 0.00 0.00 5.52
545 554 2.767644 TCAACCTCGATCTATCCCCA 57.232 50.000 0.00 0.00 0.00 4.96
592 601 8.367660 TCAACTTCCTATCTCAACAGTTAGAT 57.632 34.615 9.09 9.09 36.45 1.98
608 617 6.238648 ACGGTCAATCTATTTTCAACTTCCT 58.761 36.000 0.00 0.00 0.00 3.36
609 618 6.496338 ACGGTCAATCTATTTTCAACTTCC 57.504 37.500 0.00 0.00 0.00 3.46
610 619 9.887406 TTAAACGGTCAATCTATTTTCAACTTC 57.113 29.630 0.00 0.00 0.00 3.01
648 657 5.398603 AAGGAATGGCTATAGATCAGTCG 57.601 43.478 3.21 0.00 0.00 4.18
654 663 5.305644 AGACACGAAAGGAATGGCTATAGAT 59.694 40.000 3.21 0.00 26.69 1.98
656 665 4.747108 CAGACACGAAAGGAATGGCTATAG 59.253 45.833 0.00 0.00 27.85 1.31
669 678 7.392494 AATACAGAGAGATACAGACACGAAA 57.608 36.000 0.00 0.00 0.00 3.46
705 714 4.753610 AGCTTGTCGATAGCGTACATAGTA 59.246 41.667 14.40 0.00 43.37 1.82
706 715 3.564644 AGCTTGTCGATAGCGTACATAGT 59.435 43.478 14.40 0.00 43.37 2.12
707 716 3.908978 CAGCTTGTCGATAGCGTACATAG 59.091 47.826 14.40 5.78 43.37 2.23
708 717 3.852205 GCAGCTTGTCGATAGCGTACATA 60.852 47.826 14.40 0.00 43.37 2.29
719 728 0.657312 CACAAAGTGCAGCTTGTCGA 59.343 50.000 9.80 0.00 37.52 4.20
727 736 1.532868 GAGGCAGTACACAAAGTGCAG 59.467 52.381 6.06 0.00 45.78 4.41
738 747 2.399356 GGCGCTTTGGAGGCAGTAC 61.399 63.158 7.64 0.00 37.71 2.73
783 792 4.550831 CGCCACTTCAATAATTCTACTGCG 60.551 45.833 0.00 0.00 0.00 5.18
790 799 3.128589 TCTTGGCGCCACTTCAATAATTC 59.871 43.478 32.95 0.00 0.00 2.17
800 809 0.385390 CTTGTTTTCTTGGCGCCACT 59.615 50.000 32.95 0.00 0.00 4.00
819 828 8.283340 CTAGTACTAGGAAATTGACGTTATGC 57.717 38.462 20.44 0.00 0.00 3.14
835 844 2.048444 TGACACCGCCCTAGTACTAG 57.952 55.000 21.11 21.11 0.00 2.57
838 847 1.479323 TGAATGACACCGCCCTAGTAC 59.521 52.381 0.00 0.00 0.00 2.73
839 848 1.754803 CTGAATGACACCGCCCTAGTA 59.245 52.381 0.00 0.00 0.00 1.82
840 849 0.537188 CTGAATGACACCGCCCTAGT 59.463 55.000 0.00 0.00 0.00 2.57
841 850 0.537188 ACTGAATGACACCGCCCTAG 59.463 55.000 0.00 0.00 0.00 3.02
842 851 0.535335 GACTGAATGACACCGCCCTA 59.465 55.000 0.00 0.00 0.00 3.53
843 852 1.296715 GACTGAATGACACCGCCCT 59.703 57.895 0.00 0.00 0.00 5.19
844 853 0.392998 ATGACTGAATGACACCGCCC 60.393 55.000 0.00 0.00 0.00 6.13
845 854 1.131126 CAATGACTGAATGACACCGCC 59.869 52.381 0.00 0.00 0.00 6.13
846 855 1.806542 ACAATGACTGAATGACACCGC 59.193 47.619 0.00 0.00 0.00 5.68
847 856 2.413239 GCACAATGACTGAATGACACCG 60.413 50.000 0.00 0.00 0.00 4.94
848 857 2.816087 AGCACAATGACTGAATGACACC 59.184 45.455 0.00 0.00 0.00 4.16
849 858 3.365666 CCAGCACAATGACTGAATGACAC 60.366 47.826 9.03 0.00 35.90 3.67
850 859 2.815503 CCAGCACAATGACTGAATGACA 59.184 45.455 9.03 0.00 35.90 3.58
851 860 3.076621 TCCAGCACAATGACTGAATGAC 58.923 45.455 9.03 0.00 35.90 3.06
852 861 3.340928 CTCCAGCACAATGACTGAATGA 58.659 45.455 9.03 0.00 35.90 2.57
853 862 2.159421 GCTCCAGCACAATGACTGAATG 60.159 50.000 9.03 2.00 41.59 2.67
854 863 2.089980 GCTCCAGCACAATGACTGAAT 58.910 47.619 9.03 0.00 41.59 2.57
855 864 1.072806 AGCTCCAGCACAATGACTGAA 59.927 47.619 9.03 0.00 45.16 3.02
856 865 0.689055 AGCTCCAGCACAATGACTGA 59.311 50.000 9.03 0.00 45.16 3.41
857 866 0.803117 CAGCTCCAGCACAATGACTG 59.197 55.000 0.48 0.00 45.16 3.51
858 867 0.322277 CCAGCTCCAGCACAATGACT 60.322 55.000 0.48 0.00 45.16 3.41
859 868 0.607489 ACCAGCTCCAGCACAATGAC 60.607 55.000 0.48 0.00 45.16 3.06
860 869 0.607217 CACCAGCTCCAGCACAATGA 60.607 55.000 0.48 0.00 45.16 2.57
861 870 1.592400 CCACCAGCTCCAGCACAATG 61.592 60.000 0.48 0.00 45.16 2.82
862 871 1.303888 CCACCAGCTCCAGCACAAT 60.304 57.895 0.48 0.00 45.16 2.71
863 872 2.113774 CCACCAGCTCCAGCACAA 59.886 61.111 0.48 0.00 45.16 3.33
864 873 2.848679 TCCACCAGCTCCAGCACA 60.849 61.111 0.48 0.00 45.16 4.57
865 874 2.359230 GTCCACCAGCTCCAGCAC 60.359 66.667 0.48 0.00 45.16 4.40
866 875 3.640407 GGTCCACCAGCTCCAGCA 61.640 66.667 0.48 0.00 45.16 4.41
867 876 3.325753 AGGTCCACCAGCTCCAGC 61.326 66.667 0.00 0.00 42.49 4.85
868 877 2.219875 ACAGGTCCACCAGCTCCAG 61.220 63.158 0.00 0.00 38.89 3.86
869 878 2.122413 ACAGGTCCACCAGCTCCA 60.122 61.111 0.00 0.00 38.89 3.86
881 890 2.524394 AGGAGTGGACGCACAGGT 60.524 61.111 0.00 0.00 0.00 4.00
882 891 2.262915 GAGGAGTGGACGCACAGG 59.737 66.667 0.00 0.00 0.00 4.00
895 904 3.397439 GCCAGCAGAGCAGGAGGA 61.397 66.667 4.50 0.00 37.40 3.71
980 995 1.557099 TGGTGCCTAGTGGTCTACTG 58.443 55.000 0.00 0.00 40.65 2.74
983 998 1.837439 CCATTGGTGCCTAGTGGTCTA 59.163 52.381 0.00 0.00 35.27 2.59
1309 1342 4.719369 GTCCGAGCACGCGACCTT 62.719 66.667 15.93 0.00 38.29 3.50
1457 1490 4.980805 GCACGGCGAACACTCCCA 62.981 66.667 16.62 0.00 0.00 4.37
1560 1614 4.382320 GCCGCCCACGTCCTAACA 62.382 66.667 0.00 0.00 37.70 2.41
1594 1648 1.667830 CCTTCTTGTCAGCGCCGAA 60.668 57.895 2.29 0.00 0.00 4.30
1760 1829 3.554692 GGAACGTCGCGAGCATGG 61.555 66.667 10.24 0.00 0.00 3.66
1785 1854 2.430610 CCGGCCTAGCAGCTTCTCT 61.431 63.158 0.00 0.00 0.00 3.10
1923 1995 2.746277 AACCCGAACTGATGCCGC 60.746 61.111 0.00 0.00 0.00 6.53
2015 2087 2.567169 TGACCATCATCTTTCTCCACGT 59.433 45.455 0.00 0.00 0.00 4.49
2025 2097 0.249615 CGCCATCGTGACCATCATCT 60.250 55.000 0.00 0.00 0.00 2.90
2028 2100 2.186644 CCGCCATCGTGACCATCA 59.813 61.111 0.00 0.00 0.00 3.07
2135 2210 4.664677 GCACGAGACGCACCCACT 62.665 66.667 0.00 0.00 0.00 4.00
2196 2271 1.029947 CCGCGTAAATCCCCAGCTTT 61.030 55.000 4.92 0.00 0.00 3.51
2486 2567 1.663702 CGTCGAAAAGGTGGCGAGT 60.664 57.895 0.00 0.00 34.41 4.18
2532 2614 2.362369 ATCCGTCCACCTGCTCCAG 61.362 63.158 0.00 0.00 0.00 3.86
2610 2692 1.669115 AGTTGCGTTCGCTCTGCAT 60.669 52.632 17.63 0.00 38.60 3.96
2624 2706 0.027979 CACAACCGACACAGCAGTTG 59.972 55.000 0.00 0.00 44.04 3.16
2638 2720 8.604035 CACTAGTACATGATTGGTATTCACAAC 58.396 37.037 0.00 0.00 0.00 3.32
2648 2730 3.558931 TGGCCACTAGTACATGATTGG 57.441 47.619 0.00 0.00 0.00 3.16
2661 2750 3.652057 ACAATAAGTGCTATGGCCACT 57.348 42.857 8.16 0.00 37.74 4.00
2662 2751 4.035208 GTGTACAATAAGTGCTATGGCCAC 59.965 45.833 8.16 0.00 37.74 5.01
2663 2752 4.196193 GTGTACAATAAGTGCTATGGCCA 58.804 43.478 8.56 8.56 37.74 5.36
2664 2753 4.196193 TGTGTACAATAAGTGCTATGGCC 58.804 43.478 0.00 0.00 37.74 5.36
2679 2768 3.304324 CCGTTGCAATCACATTGTGTACA 60.304 43.478 16.06 7.90 42.20 2.90
2709 2798 2.621526 AGAAACGATCAACCAACCCAAC 59.378 45.455 0.00 0.00 0.00 3.77
2713 2802 2.779506 AGGAGAAACGATCAACCAACC 58.220 47.619 0.00 0.00 31.83 3.77
2714 2803 4.610680 CGAAAGGAGAAACGATCAACCAAC 60.611 45.833 0.00 0.00 31.83 3.77
2715 2804 3.496884 CGAAAGGAGAAACGATCAACCAA 59.503 43.478 0.00 0.00 31.83 3.67
2716 2805 3.064207 CGAAAGGAGAAACGATCAACCA 58.936 45.455 0.00 0.00 31.83 3.67
2717 2806 3.064931 ACGAAAGGAGAAACGATCAACC 58.935 45.455 0.00 0.00 0.00 3.77
2773 2869 3.118775 TGGTATCTCTGTTGTCCATTCCG 60.119 47.826 0.00 0.00 0.00 4.30
2775 2871 4.192317 GGTGGTATCTCTGTTGTCCATTC 58.808 47.826 0.00 0.00 0.00 2.67
2789 2885 3.650139 CAAGTACGGCTATGGTGGTATC 58.350 50.000 0.00 0.00 0.00 2.24
2795 2891 0.178068 CCTGCAAGTACGGCTATGGT 59.822 55.000 12.69 0.00 0.00 3.55
2796 2892 0.464036 TCCTGCAAGTACGGCTATGG 59.536 55.000 12.69 11.57 0.00 2.74
2797 2893 2.205074 CTTCCTGCAAGTACGGCTATG 58.795 52.381 12.69 4.68 0.00 2.23
2840 2936 7.446625 AGACTTATCTGTTTGAAGCATTTGACT 59.553 33.333 0.00 0.00 32.29 3.41
2849 2945 7.091443 ACGGACTTAGACTTATCTGTTTGAAG 58.909 38.462 0.00 0.00 36.29 3.02
2873 2969 2.861006 GAAGGCGGCGTTGAAGAC 59.139 61.111 13.20 0.00 0.00 3.01
2927 3023 0.907704 AGGGTACATGGCCGACTTGA 60.908 55.000 0.00 0.00 0.00 3.02
2928 3024 0.828022 TAGGGTACATGGCCGACTTG 59.172 55.000 0.00 0.00 0.00 3.16
2936 3032 4.464008 AGTTTGATGCATAGGGTACATGG 58.536 43.478 0.00 0.00 0.00 3.66
2949 3045 1.067635 ACATGGGCGAAAGTTTGATGC 60.068 47.619 0.00 0.00 0.00 3.91
2979 3075 0.514691 GTGCTGCGGACTTGAGAAAG 59.485 55.000 0.00 0.00 0.00 2.62
2983 3079 1.739562 GGAGTGCTGCGGACTTGAG 60.740 63.158 0.00 0.00 0.00 3.02
2985 3081 1.165907 TTTGGAGTGCTGCGGACTTG 61.166 55.000 0.00 0.00 0.00 3.16
2994 3094 7.659390 GCTCATCTATAGTTATTTTGGAGTGCT 59.341 37.037 0.00 0.00 0.00 4.40
3014 3114 4.320348 GCTGCTTGAAGGATTATGCTCATC 60.320 45.833 0.00 0.00 0.00 2.92
3026 3126 4.889832 AGATATTTTCGCTGCTTGAAGG 57.110 40.909 0.00 0.00 0.00 3.46
3036 3136 9.298774 ACTAGTGTTGTACTTAGATATTTTCGC 57.701 33.333 0.00 0.00 40.89 4.70
3079 3179 8.266473 TGCTTTTATATTAGTTTACGGAGGGAA 58.734 33.333 0.00 0.00 0.00 3.97
3080 3180 7.794041 TGCTTTTATATTAGTTTACGGAGGGA 58.206 34.615 0.00 0.00 0.00 4.20
3081 3181 8.617290 ATGCTTTTATATTAGTTTACGGAGGG 57.383 34.615 0.00 0.00 0.00 4.30
3130 3230 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3131 3231 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3132 3232 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3133 3233 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3134 3234 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3141 3241 8.921205 GGATTGTACTCCCTCTGTAAACTAATA 58.079 37.037 0.00 0.00 0.00 0.98
3142 3242 7.402071 TGGATTGTACTCCCTCTGTAAACTAAT 59.598 37.037 0.00 0.00 34.12 1.73
3143 3243 6.727231 TGGATTGTACTCCCTCTGTAAACTAA 59.273 38.462 0.00 0.00 34.12 2.24
3144 3244 6.258354 TGGATTGTACTCCCTCTGTAAACTA 58.742 40.000 0.00 0.00 34.12 2.24
3145 3245 5.091552 TGGATTGTACTCCCTCTGTAAACT 58.908 41.667 0.00 0.00 34.12 2.66
3146 3246 5.416271 TGGATTGTACTCCCTCTGTAAAC 57.584 43.478 0.00 0.00 34.12 2.01
3147 3247 6.183361 TGTTTGGATTGTACTCCCTCTGTAAA 60.183 38.462 0.00 0.00 34.12 2.01
3148 3248 5.308497 TGTTTGGATTGTACTCCCTCTGTAA 59.692 40.000 0.00 0.00 34.12 2.41
3149 3249 4.841813 TGTTTGGATTGTACTCCCTCTGTA 59.158 41.667 0.00 0.00 34.12 2.74
3150 3250 3.650942 TGTTTGGATTGTACTCCCTCTGT 59.349 43.478 0.00 0.00 34.12 3.41
3151 3251 4.286297 TGTTTGGATTGTACTCCCTCTG 57.714 45.455 0.00 0.00 34.12 3.35
3152 3252 5.520748 AATGTTTGGATTGTACTCCCTCT 57.479 39.130 0.00 0.00 34.12 3.69
3153 3253 6.884836 ACTTAATGTTTGGATTGTACTCCCTC 59.115 38.462 0.00 0.00 34.12 4.30
3154 3254 6.790319 ACTTAATGTTTGGATTGTACTCCCT 58.210 36.000 0.00 0.00 34.12 4.20
3155 3255 7.462571 AACTTAATGTTTGGATTGTACTCCC 57.537 36.000 0.00 0.00 34.84 4.30
3212 3312 9.799106 CATGATTAAAGGGGACAACTAGAATAT 57.201 33.333 0.00 0.00 0.00 1.28
3213 3313 8.217799 CCATGATTAAAGGGGACAACTAGAATA 58.782 37.037 0.00 0.00 0.00 1.75
3214 3314 7.062957 CCATGATTAAAGGGGACAACTAGAAT 58.937 38.462 0.00 0.00 0.00 2.40
3215 3315 6.216662 TCCATGATTAAAGGGGACAACTAGAA 59.783 38.462 0.00 0.00 0.00 2.10
3216 3316 5.729229 TCCATGATTAAAGGGGACAACTAGA 59.271 40.000 0.00 0.00 0.00 2.43
3217 3317 5.823045 GTCCATGATTAAAGGGGACAACTAG 59.177 44.000 11.75 0.00 45.70 2.57
3218 3318 5.628200 CGTCCATGATTAAAGGGGACAACTA 60.628 44.000 15.07 0.00 46.52 2.24
3219 3319 4.600062 GTCCATGATTAAAGGGGACAACT 58.400 43.478 11.75 0.00 45.70 3.16
3220 3320 3.377172 CGTCCATGATTAAAGGGGACAAC 59.623 47.826 15.07 0.00 46.52 3.32
3221 3321 3.616219 CGTCCATGATTAAAGGGGACAA 58.384 45.455 15.07 0.00 46.52 3.18
3222 3322 2.682563 GCGTCCATGATTAAAGGGGACA 60.683 50.000 15.07 0.00 46.52 4.02
3223 3323 1.947456 GCGTCCATGATTAAAGGGGAC 59.053 52.381 0.00 0.00 43.55 4.46
3224 3324 1.133915 GGCGTCCATGATTAAAGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
3225 3325 1.318576 GGCGTCCATGATTAAAGGGG 58.681 55.000 0.00 0.00 0.00 4.79
3226 3326 0.944386 CGGCGTCCATGATTAAAGGG 59.056 55.000 0.00 0.00 0.00 3.95
3227 3327 1.948104 TCGGCGTCCATGATTAAAGG 58.052 50.000 6.85 0.00 0.00 3.11
3228 3328 5.408299 TGAATATCGGCGTCCATGATTAAAG 59.592 40.000 6.85 0.00 0.00 1.85
3229 3329 5.178623 GTGAATATCGGCGTCCATGATTAAA 59.821 40.000 6.85 0.00 0.00 1.52
3230 3330 4.688879 GTGAATATCGGCGTCCATGATTAA 59.311 41.667 6.85 0.00 0.00 1.40
3231 3331 4.242475 GTGAATATCGGCGTCCATGATTA 58.758 43.478 6.85 0.00 0.00 1.75
3232 3332 3.067106 GTGAATATCGGCGTCCATGATT 58.933 45.455 6.85 0.00 0.00 2.57
3233 3333 2.612972 GGTGAATATCGGCGTCCATGAT 60.613 50.000 6.85 0.00 0.00 2.45
3234 3334 1.270094 GGTGAATATCGGCGTCCATGA 60.270 52.381 6.85 0.00 0.00 3.07
3235 3335 1.148310 GGTGAATATCGGCGTCCATG 58.852 55.000 6.85 0.00 0.00 3.66
3236 3336 0.756294 TGGTGAATATCGGCGTCCAT 59.244 50.000 6.85 0.00 0.00 3.41
3237 3337 0.179094 GTGGTGAATATCGGCGTCCA 60.179 55.000 6.85 3.07 0.00 4.02
3238 3338 0.179094 TGTGGTGAATATCGGCGTCC 60.179 55.000 6.85 0.44 0.00 4.79
3239 3339 0.928229 GTGTGGTGAATATCGGCGTC 59.072 55.000 6.85 0.00 0.00 5.19
3240 3340 0.804544 CGTGTGGTGAATATCGGCGT 60.805 55.000 6.85 0.00 0.00 5.68
3241 3341 0.804544 ACGTGTGGTGAATATCGGCG 60.805 55.000 0.00 0.00 0.00 6.46
3242 3342 3.059603 ACGTGTGGTGAATATCGGC 57.940 52.632 0.00 0.00 0.00 5.54
3254 3354 5.559227 CATGTCAAATATACCACACGTGTG 58.441 41.667 36.13 36.13 45.23 3.82
3255 3355 4.094294 GCATGTCAAATATACCACACGTGT 59.906 41.667 17.22 17.22 0.00 4.49
3256 3356 4.587306 GCATGTCAAATATACCACACGTG 58.413 43.478 15.48 15.48 0.00 4.49
3257 3357 3.308595 CGCATGTCAAATATACCACACGT 59.691 43.478 0.00 0.00 0.00 4.49
3258 3358 3.844585 GCGCATGTCAAATATACCACACG 60.845 47.826 0.30 0.00 0.00 4.49
3259 3359 3.548014 GGCGCATGTCAAATATACCACAC 60.548 47.826 10.83 0.00 0.00 3.82
3260 3360 2.616376 GGCGCATGTCAAATATACCACA 59.384 45.455 10.83 0.00 0.00 4.17
3261 3361 2.031157 GGGCGCATGTCAAATATACCAC 60.031 50.000 10.83 0.00 0.00 4.16
3262 3362 2.226330 GGGCGCATGTCAAATATACCA 58.774 47.619 10.83 0.00 0.00 3.25
3263 3363 2.031157 GTGGGCGCATGTCAAATATACC 60.031 50.000 10.83 0.00 0.00 2.73
3264 3364 2.616376 TGTGGGCGCATGTCAAATATAC 59.384 45.455 10.83 0.00 0.00 1.47
3265 3365 2.616376 GTGTGGGCGCATGTCAAATATA 59.384 45.455 10.83 0.00 0.00 0.86
3266 3366 1.405105 GTGTGGGCGCATGTCAAATAT 59.595 47.619 10.83 0.00 0.00 1.28
3267 3367 0.808125 GTGTGGGCGCATGTCAAATA 59.192 50.000 10.83 0.00 0.00 1.40
3268 3368 1.177895 TGTGTGGGCGCATGTCAAAT 61.178 50.000 10.83 0.00 0.00 2.32
3269 3369 1.177895 ATGTGTGGGCGCATGTCAAA 61.178 50.000 10.83 0.00 43.45 2.69
3270 3370 1.585267 GATGTGTGGGCGCATGTCAA 61.585 55.000 10.83 0.00 44.91 3.18
3271 3371 2.033911 ATGTGTGGGCGCATGTCA 59.966 55.556 10.83 7.31 43.45 3.58
3272 3372 2.793946 GATGTGTGGGCGCATGTC 59.206 61.111 10.83 1.35 44.91 3.06
3273 3373 3.126879 CGATGTGTGGGCGCATGT 61.127 61.111 10.83 0.00 44.91 3.21
3274 3374 3.126879 ACGATGTGTGGGCGCATG 61.127 61.111 10.83 0.00 44.91 4.06
3284 3384 1.422388 CTCACACCAGACACGATGTG 58.578 55.000 0.00 0.00 43.08 3.21
3285 3385 0.319900 GCTCACACCAGACACGATGT 60.320 55.000 0.00 0.00 0.00 3.06
3286 3386 0.319813 TGCTCACACCAGACACGATG 60.320 55.000 0.00 0.00 0.00 3.84
3287 3387 0.037882 CTGCTCACACCAGACACGAT 60.038 55.000 0.00 0.00 32.03 3.73
3288 3388 1.363807 CTGCTCACACCAGACACGA 59.636 57.895 0.00 0.00 32.03 4.35
3289 3389 1.665916 CCTGCTCACACCAGACACG 60.666 63.158 0.00 0.00 32.03 4.49
3290 3390 0.320247 CTCCTGCTCACACCAGACAC 60.320 60.000 0.00 0.00 32.03 3.67
3291 3391 1.475169 CCTCCTGCTCACACCAGACA 61.475 60.000 0.00 0.00 32.03 3.41
3292 3392 1.294780 CCTCCTGCTCACACCAGAC 59.705 63.158 0.00 0.00 32.03 3.51
3293 3393 2.587247 GCCTCCTGCTCACACCAGA 61.587 63.158 0.00 0.00 36.87 3.86
3294 3394 2.046507 GCCTCCTGCTCACACCAG 60.047 66.667 0.00 0.00 36.87 4.00
3295 3395 2.848679 TGCCTCCTGCTCACACCA 60.849 61.111 0.00 0.00 42.00 4.17
3296 3396 2.046507 CTGCCTCCTGCTCACACC 60.047 66.667 0.00 0.00 42.00 4.16
3297 3397 2.745492 GCTGCCTCCTGCTCACAC 60.745 66.667 0.00 0.00 42.00 3.82
3298 3398 4.025858 GGCTGCCTCCTGCTCACA 62.026 66.667 12.43 0.00 42.00 3.58
3299 3399 4.792804 GGGCTGCCTCCTGCTCAC 62.793 72.222 19.68 0.00 42.00 3.51
3301 3401 2.446848 TATGGGCTGCCTCCTGCTC 61.447 63.158 19.68 0.00 42.00 4.26
3302 3402 2.367377 TATGGGCTGCCTCCTGCT 60.367 61.111 19.68 0.00 42.00 4.24
3303 3403 2.203266 GTATGGGCTGCCTCCTGC 60.203 66.667 19.68 1.35 41.77 4.85
3304 3404 2.109799 CGTATGGGCTGCCTCCTG 59.890 66.667 19.68 1.37 0.00 3.86
3305 3405 3.164269 CCGTATGGGCTGCCTCCT 61.164 66.667 19.68 6.05 0.00 3.69
3315 3415 1.745115 CCACACACAGCCCGTATGG 60.745 63.158 0.00 0.00 37.09 2.74
3316 3416 1.019278 GTCCACACACAGCCCGTATG 61.019 60.000 0.00 0.00 0.00 2.39
3317 3417 1.295423 GTCCACACACAGCCCGTAT 59.705 57.895 0.00 0.00 0.00 3.06
3318 3418 2.738480 GTCCACACACAGCCCGTA 59.262 61.111 0.00 0.00 0.00 4.02
3319 3419 4.602259 CGTCCACACACAGCCCGT 62.602 66.667 0.00 0.00 0.00 5.28
3321 3421 3.936203 TCCGTCCACACACAGCCC 61.936 66.667 0.00 0.00 0.00 5.19
3322 3422 2.665185 GTCCGTCCACACACAGCC 60.665 66.667 0.00 0.00 0.00 4.85
3323 3423 0.884704 AATGTCCGTCCACACACAGC 60.885 55.000 0.00 0.00 0.00 4.40
3324 3424 2.029380 TCTAATGTCCGTCCACACACAG 60.029 50.000 0.00 0.00 0.00 3.66
3325 3425 1.964933 TCTAATGTCCGTCCACACACA 59.035 47.619 0.00 0.00 0.00 3.72
3326 3426 2.735134 GTTCTAATGTCCGTCCACACAC 59.265 50.000 0.00 0.00 0.00 3.82
3327 3427 2.631062 AGTTCTAATGTCCGTCCACACA 59.369 45.455 0.00 0.00 0.00 3.72
3328 3428 2.993899 CAGTTCTAATGTCCGTCCACAC 59.006 50.000 0.00 0.00 0.00 3.82
3329 3429 2.611971 GCAGTTCTAATGTCCGTCCACA 60.612 50.000 0.00 0.00 0.00 4.17
3330 3430 2.000447 GCAGTTCTAATGTCCGTCCAC 59.000 52.381 0.00 0.00 0.00 4.02
3331 3431 1.066430 GGCAGTTCTAATGTCCGTCCA 60.066 52.381 0.00 0.00 0.00 4.02
3332 3432 1.653151 GGCAGTTCTAATGTCCGTCC 58.347 55.000 0.00 0.00 0.00 4.79
3333 3433 1.066430 TGGGCAGTTCTAATGTCCGTC 60.066 52.381 0.00 0.00 45.78 4.79
3334 3434 0.981183 TGGGCAGTTCTAATGTCCGT 59.019 50.000 0.00 0.00 45.78 4.69
3335 3435 1.338674 TGTGGGCAGTTCTAATGTCCG 60.339 52.381 0.00 0.00 45.78 4.79
3336 3436 2.084546 GTGTGGGCAGTTCTAATGTCC 58.915 52.381 0.00 0.00 43.02 4.02
3337 3437 1.732259 CGTGTGGGCAGTTCTAATGTC 59.268 52.381 0.00 0.00 0.00 3.06
3338 3438 1.071699 ACGTGTGGGCAGTTCTAATGT 59.928 47.619 0.00 0.00 0.00 2.71
3339 3439 1.464608 CACGTGTGGGCAGTTCTAATG 59.535 52.381 7.58 0.00 0.00 1.90
3340 3440 1.071699 ACACGTGTGGGCAGTTCTAAT 59.928 47.619 22.71 0.00 34.19 1.73
3341 3441 0.466543 ACACGTGTGGGCAGTTCTAA 59.533 50.000 22.71 0.00 34.19 2.10
3342 3442 0.249699 CACACGTGTGGGCAGTTCTA 60.250 55.000 35.65 0.00 42.10 2.10
3343 3443 1.523711 CACACGTGTGGGCAGTTCT 60.524 57.895 35.65 1.12 42.10 3.01
3344 3444 3.022287 CACACGTGTGGGCAGTTC 58.978 61.111 35.65 0.00 42.10 3.01
3357 3457 2.667199 AAGTAACCGCGCCCACAC 60.667 61.111 0.00 0.00 0.00 3.82
3358 3458 2.357760 GAAGTAACCGCGCCCACA 60.358 61.111 0.00 0.00 0.00 4.17
3359 3459 3.484547 CGAAGTAACCGCGCCCAC 61.485 66.667 0.00 0.00 0.00 4.61
3360 3460 3.993584 ACGAAGTAACCGCGCCCA 61.994 61.111 0.00 0.00 41.94 5.36
3361 3461 3.484547 CACGAAGTAACCGCGCCC 61.485 66.667 0.00 0.00 41.61 6.13
3362 3462 4.143363 GCACGAAGTAACCGCGCC 62.143 66.667 0.00 0.00 41.61 6.53
3363 3463 4.143363 GGCACGAAGTAACCGCGC 62.143 66.667 0.00 0.00 41.61 6.86
3364 3464 2.735478 TGGCACGAAGTAACCGCG 60.735 61.111 0.00 0.00 41.61 6.46
3365 3465 1.957186 TGTGGCACGAAGTAACCGC 60.957 57.895 13.77 0.00 41.61 5.68
3366 3466 1.857364 GTGTGGCACGAAGTAACCG 59.143 57.895 13.77 0.00 41.61 4.44
3377 3477 2.610532 TACTTGTTGGGCGTGTGGCA 62.611 55.000 0.00 0.00 46.16 4.92
3378 3478 1.894756 TACTTGTTGGGCGTGTGGC 60.895 57.895 0.00 0.00 42.51 5.01
3379 3479 0.534203 AGTACTTGTTGGGCGTGTGG 60.534 55.000 0.00 0.00 0.00 4.17
3380 3480 1.796459 GTAGTACTTGTTGGGCGTGTG 59.204 52.381 0.00 0.00 0.00 3.82
3381 3481 1.690352 AGTAGTACTTGTTGGGCGTGT 59.310 47.619 0.00 0.00 0.00 4.49
3382 3482 2.288579 TGAGTAGTACTTGTTGGGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
3383 3483 1.965643 TGAGTAGTACTTGTTGGGCGT 59.034 47.619 0.00 0.00 0.00 5.68
3384 3484 2.736144 TGAGTAGTACTTGTTGGGCG 57.264 50.000 0.00 0.00 0.00 6.13
3385 3485 4.473477 AGATGAGTAGTACTTGTTGGGC 57.527 45.455 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.