Multiple sequence alignment - TraesCS6B01G387800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G387800 chr6B 100.000 5449 0 0 1 5449 662518484 662513036 0.000000e+00 10063.0
1 TraesCS6B01G387800 chr6D 89.413 4496 252 107 425 4786 437811024 437806619 0.000000e+00 5459.0
2 TraesCS6B01G387800 chr6D 96.399 611 21 1 4839 5449 437806332 437805723 0.000000e+00 1005.0
3 TraesCS6B01G387800 chr6A 93.905 1411 71 6 3381 4789 586102110 586100713 0.000000e+00 2115.0
4 TraesCS6B01G387800 chr6A 88.962 915 58 19 1938 2816 586103564 586102657 0.000000e+00 1090.0
5 TraesCS6B01G387800 chr6A 87.907 860 48 29 433 1265 586105553 586104723 0.000000e+00 961.0
6 TraesCS6B01G387800 chr6A 91.318 622 27 9 4839 5449 586100412 586099807 0.000000e+00 824.0
7 TraesCS6B01G387800 chr6A 91.522 519 34 7 2822 3337 586102620 586102109 0.000000e+00 706.0
8 TraesCS6B01G387800 chr6A 79.240 684 68 44 1289 1926 586104394 586103739 5.080000e-110 409.0
9 TraesCS6B01G387800 chr5A 84.635 397 47 10 1 391 651519471 651519859 3.080000e-102 383.0
10 TraesCS6B01G387800 chr5A 97.872 47 1 0 4795 4841 656708098 656708144 1.260000e-11 82.4
11 TraesCS6B01G387800 chr5A 97.674 43 1 0 4799 4841 159863263 159863221 2.110000e-09 75.0
12 TraesCS6B01G387800 chr7A 83.565 359 51 6 1 356 690770228 690770581 4.070000e-86 329.0
13 TraesCS6B01G387800 chr7A 100.000 46 0 0 4799 4844 100712974 100712929 9.720000e-13 86.1
14 TraesCS6B01G387800 chr1A 78.372 393 66 14 1 391 1629709 1630084 2.540000e-58 237.0
15 TraesCS6B01G387800 chr1A 93.617 47 3 0 4799 4845 521632954 521633000 2.720000e-08 71.3
16 TraesCS6B01G387800 chrUn 78.117 393 67 14 1 391 150957972 150957597 1.180000e-56 231.0
17 TraesCS6B01G387800 chr2B 78.133 407 55 17 1 391 776765045 776765433 1.530000e-55 228.0
18 TraesCS6B01G387800 chr5B 77.541 423 59 16 1 391 681096224 681095806 7.100000e-54 222.0
19 TraesCS6B01G387800 chr3D 78.093 388 59 14 3 367 326222937 326222553 7.100000e-54 222.0
20 TraesCS6B01G387800 chr3D 93.878 49 3 0 4799 4847 39329336 39329384 2.110000e-09 75.0
21 TraesCS6B01G387800 chr5D 81.716 268 27 9 1 251 564094752 564095014 2.570000e-48 204.0
22 TraesCS6B01G387800 chr2A 76.485 404 52 21 1 390 552642957 552642583 4.340000e-41 180.0
23 TraesCS6B01G387800 chr3A 100.000 46 0 0 4799 4844 598939760 598939805 9.720000e-13 86.1
24 TraesCS6B01G387800 chr7D 97.872 47 1 0 4799 4845 616753362 616753316 1.260000e-11 82.4
25 TraesCS6B01G387800 chr7B 95.918 49 2 0 4799 4847 661451001 661450953 4.520000e-11 80.5
26 TraesCS6B01G387800 chr7B 100.000 43 0 0 4799 4841 704641631 704641673 4.520000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G387800 chr6B 662513036 662518484 5448 True 10063.0 10063 100.000 1 5449 1 chr6B.!!$R1 5448
1 TraesCS6B01G387800 chr6D 437805723 437811024 5301 True 3232.0 5459 92.906 425 5449 2 chr6D.!!$R1 5024
2 TraesCS6B01G387800 chr6A 586099807 586105553 5746 True 1017.5 2115 88.809 433 5449 6 chr6A.!!$R1 5016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.034380 ACCATCGAGGAGGACGAGAA 60.034 55.0 0.00 0.0 42.81 2.87 F
381 382 0.035820 ATCCTTCCCGTGCGCTAAAA 60.036 50.0 9.73 0.0 0.00 1.52 F
553 559 0.319728 CCCCTGTCTGTCTGTCTGTG 59.680 60.0 0.00 0.0 0.00 3.66 F
1227 1274 0.179073 CTCACCTATTCCCCACGCAG 60.179 60.0 0.00 0.0 0.00 5.18 F
2724 3345 0.179065 GGCGCGGGTCCTTTTATACT 60.179 55.0 8.83 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1243 0.179073 CTGCGTGGGGAATAGGTGAG 60.179 60.0 0.0 0.0 0.00 3.51 R
1224 1263 0.317020 GAAATCGGCAATACGGCTGC 60.317 55.0 0.0 0.0 40.04 5.25 R
1841 2255 0.330604 ACGACCTCTACTGGGTAGCA 59.669 55.0 0.0 0.0 37.17 3.49 R
2839 3491 0.179032 TTGCCTCGCCAAGACAGAAA 60.179 50.0 0.0 0.0 0.00 2.52 R
4591 5262 0.739462 CCTTCGCCTACACGATGCAA 60.739 55.0 0.0 0.0 42.54 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.777925 CGTGCGCGGAAGGAACAG 61.778 66.667 12.87 0.00 0.00 3.16
23 24 3.423154 GTGCGCGGAAGGAACAGG 61.423 66.667 8.83 0.00 0.00 4.00
27 28 4.388499 GCGGAAGGAACAGGCGGA 62.388 66.667 0.00 0.00 0.00 5.54
28 29 2.345991 CGGAAGGAACAGGCGGAA 59.654 61.111 0.00 0.00 0.00 4.30
29 30 1.741770 CGGAAGGAACAGGCGGAAG 60.742 63.158 0.00 0.00 0.00 3.46
41 42 2.279784 CGGAAGCCCAGATCGAGC 60.280 66.667 0.00 0.00 0.00 5.03
42 43 2.790791 CGGAAGCCCAGATCGAGCT 61.791 63.158 0.00 0.00 38.88 4.09
43 44 1.227497 GGAAGCCCAGATCGAGCTG 60.227 63.158 23.51 23.51 36.84 4.24
49 50 3.947173 CAGATCGAGCTGGGACCT 58.053 61.111 22.80 0.00 32.26 3.85
50 51 3.117657 CAGATCGAGCTGGGACCTA 57.882 57.895 22.80 0.00 32.26 3.08
51 52 0.671251 CAGATCGAGCTGGGACCTAC 59.329 60.000 22.80 0.00 32.26 3.18
52 53 0.820074 AGATCGAGCTGGGACCTACG 60.820 60.000 0.39 0.00 0.00 3.51
53 54 1.076923 ATCGAGCTGGGACCTACGT 60.077 57.895 0.00 0.00 0.00 3.57
54 55 1.102222 ATCGAGCTGGGACCTACGTC 61.102 60.000 0.00 0.00 38.38 4.34
55 56 2.799371 GAGCTGGGACCTACGTCG 59.201 66.667 0.00 0.00 40.17 5.12
56 57 1.748122 GAGCTGGGACCTACGTCGA 60.748 63.158 0.00 0.00 40.17 4.20
57 58 1.991099 GAGCTGGGACCTACGTCGAC 61.991 65.000 5.18 5.18 40.17 4.20
58 59 3.061260 GCTGGGACCTACGTCGACC 62.061 68.421 10.58 0.00 40.17 4.79
59 60 1.378250 CTGGGACCTACGTCGACCT 60.378 63.158 10.58 0.34 40.17 3.85
60 61 1.654954 CTGGGACCTACGTCGACCTG 61.655 65.000 10.58 0.00 40.17 4.00
61 62 2.413142 GGGACCTACGTCGACCTGG 61.413 68.421 10.58 11.86 40.17 4.45
62 63 2.413142 GGACCTACGTCGACCTGGG 61.413 68.421 13.97 13.97 40.17 4.45
63 64 1.377725 GACCTACGTCGACCTGGGA 60.378 63.158 20.73 0.00 0.00 4.37
64 65 0.750911 GACCTACGTCGACCTGGGAT 60.751 60.000 20.73 7.59 0.00 3.85
65 66 1.035932 ACCTACGTCGACCTGGGATG 61.036 60.000 20.73 3.63 0.00 3.51
66 67 0.750546 CCTACGTCGACCTGGGATGA 60.751 60.000 10.58 0.00 0.00 2.92
67 68 1.319541 CTACGTCGACCTGGGATGAT 58.680 55.000 10.58 0.00 0.00 2.45
68 69 1.001268 CTACGTCGACCTGGGATGATG 60.001 57.143 10.58 0.78 0.00 3.07
69 70 0.683179 ACGTCGACCTGGGATGATGA 60.683 55.000 10.58 0.00 0.00 2.92
70 71 0.459899 CGTCGACCTGGGATGATGAA 59.540 55.000 10.58 0.00 0.00 2.57
71 72 1.134818 CGTCGACCTGGGATGATGAAA 60.135 52.381 10.58 0.00 0.00 2.69
72 73 2.676750 CGTCGACCTGGGATGATGAAAA 60.677 50.000 10.58 0.00 0.00 2.29
73 74 3.545703 GTCGACCTGGGATGATGAAAAT 58.454 45.455 3.51 0.00 0.00 1.82
74 75 3.561725 GTCGACCTGGGATGATGAAAATC 59.438 47.826 3.51 0.00 0.00 2.17
75 76 2.880890 CGACCTGGGATGATGAAAATCC 59.119 50.000 0.00 0.00 42.57 3.01
76 77 3.434167 CGACCTGGGATGATGAAAATCCT 60.434 47.826 0.00 0.00 42.83 3.24
77 78 4.140536 GACCTGGGATGATGAAAATCCTC 58.859 47.826 0.00 0.00 42.83 3.71
78 79 3.528905 ACCTGGGATGATGAAAATCCTCA 59.471 43.478 0.00 0.00 42.83 3.86
79 80 4.142790 CCTGGGATGATGAAAATCCTCAG 58.857 47.826 11.14 11.14 42.83 3.35
80 81 4.386088 CCTGGGATGATGAAAATCCTCAGT 60.386 45.833 14.45 0.00 42.83 3.41
81 82 4.529897 TGGGATGATGAAAATCCTCAGTG 58.470 43.478 2.68 0.00 42.83 3.66
82 83 3.887716 GGGATGATGAAAATCCTCAGTGG 59.112 47.826 2.68 0.00 42.83 4.00
83 84 3.317430 GGATGATGAAAATCCTCAGTGGC 59.683 47.826 0.00 0.00 40.50 5.01
84 85 3.726557 TGATGAAAATCCTCAGTGGCT 57.273 42.857 0.00 0.00 35.26 4.75
85 86 4.842531 TGATGAAAATCCTCAGTGGCTA 57.157 40.909 0.00 0.00 35.26 3.93
86 87 4.774124 TGATGAAAATCCTCAGTGGCTAG 58.226 43.478 0.00 0.00 35.26 3.42
87 88 4.471025 TGATGAAAATCCTCAGTGGCTAGA 59.529 41.667 0.00 0.00 35.26 2.43
88 89 4.207891 TGAAAATCCTCAGTGGCTAGAC 57.792 45.455 0.00 0.00 35.26 2.59
89 90 2.969628 AAATCCTCAGTGGCTAGACG 57.030 50.000 0.00 0.00 35.26 4.18
90 91 0.461961 AATCCTCAGTGGCTAGACGC 59.538 55.000 0.00 0.00 35.26 5.19
91 92 1.729470 ATCCTCAGTGGCTAGACGCG 61.729 60.000 3.53 3.53 40.44 6.01
92 93 2.701780 CCTCAGTGGCTAGACGCGT 61.702 63.158 13.85 13.85 40.44 6.01
93 94 1.213013 CTCAGTGGCTAGACGCGTT 59.787 57.895 15.53 6.16 40.44 4.84
94 95 0.388649 CTCAGTGGCTAGACGCGTTT 60.389 55.000 15.53 11.28 40.44 3.60
95 96 0.883153 TCAGTGGCTAGACGCGTTTA 59.117 50.000 15.53 11.98 40.44 2.01
96 97 0.989890 CAGTGGCTAGACGCGTTTAC 59.010 55.000 15.53 2.22 40.44 2.01
97 98 0.455633 AGTGGCTAGACGCGTTTACG 60.456 55.000 15.53 7.51 40.44 3.18
107 108 3.455685 CGTTTACGCCGTCAGACC 58.544 61.111 0.00 0.00 0.00 3.85
108 109 1.372004 CGTTTACGCCGTCAGACCA 60.372 57.895 0.00 0.00 0.00 4.02
109 110 1.611592 CGTTTACGCCGTCAGACCAC 61.612 60.000 0.00 0.00 0.00 4.16
110 111 0.598158 GTTTACGCCGTCAGACCACA 60.598 55.000 0.00 0.00 0.00 4.17
111 112 0.598158 TTTACGCCGTCAGACCACAC 60.598 55.000 0.00 0.00 0.00 3.82
112 113 2.424705 TTACGCCGTCAGACCACACC 62.425 60.000 0.00 0.00 0.00 4.16
113 114 4.293648 CGCCGTCAGACCACACCA 62.294 66.667 0.00 0.00 0.00 4.17
114 115 2.347490 GCCGTCAGACCACACCAT 59.653 61.111 0.00 0.00 0.00 3.55
115 116 1.741770 GCCGTCAGACCACACCATC 60.742 63.158 0.00 0.00 0.00 3.51
116 117 1.446099 CCGTCAGACCACACCATCG 60.446 63.158 0.00 0.00 0.00 3.84
117 118 1.584495 CGTCAGACCACACCATCGA 59.416 57.895 0.00 0.00 0.00 3.59
118 119 0.456824 CGTCAGACCACACCATCGAG 60.457 60.000 0.00 0.00 0.00 4.04
119 120 0.108615 GTCAGACCACACCATCGAGG 60.109 60.000 0.00 0.00 45.67 4.63
120 121 0.251608 TCAGACCACACCATCGAGGA 60.252 55.000 0.00 0.00 41.22 3.71
121 122 0.174389 CAGACCACACCATCGAGGAG 59.826 60.000 0.00 0.00 41.22 3.69
122 123 0.972983 AGACCACACCATCGAGGAGG 60.973 60.000 0.00 0.00 41.22 4.30
123 124 0.970937 GACCACACCATCGAGGAGGA 60.971 60.000 0.00 0.00 41.22 3.71
124 125 1.258445 ACCACACCATCGAGGAGGAC 61.258 60.000 0.00 0.00 41.22 3.85
125 126 1.139734 CACACCATCGAGGAGGACG 59.860 63.158 0.00 0.00 41.22 4.79
126 127 1.001269 ACACCATCGAGGAGGACGA 60.001 57.895 0.00 0.00 43.65 4.20
127 128 1.032657 ACACCATCGAGGAGGACGAG 61.033 60.000 0.00 0.00 42.81 4.18
128 129 0.748367 CACCATCGAGGAGGACGAGA 60.748 60.000 0.00 0.00 42.81 4.04
129 130 0.034380 ACCATCGAGGAGGACGAGAA 60.034 55.000 0.00 0.00 42.81 2.87
130 131 0.665835 CCATCGAGGAGGACGAGAAG 59.334 60.000 0.00 0.00 42.81 2.85
131 132 1.384525 CATCGAGGAGGACGAGAAGT 58.615 55.000 0.00 0.00 42.81 3.01
132 133 2.562635 CATCGAGGAGGACGAGAAGTA 58.437 52.381 0.00 0.00 42.81 2.24
133 134 2.775911 TCGAGGAGGACGAGAAGTAA 57.224 50.000 0.00 0.00 34.85 2.24
134 135 3.278668 TCGAGGAGGACGAGAAGTAAT 57.721 47.619 0.00 0.00 34.85 1.89
135 136 3.618351 TCGAGGAGGACGAGAAGTAATT 58.382 45.455 0.00 0.00 34.85 1.40
136 137 4.015084 TCGAGGAGGACGAGAAGTAATTT 58.985 43.478 0.00 0.00 34.85 1.82
137 138 4.461781 TCGAGGAGGACGAGAAGTAATTTT 59.538 41.667 0.00 0.00 34.85 1.82
138 139 5.047519 TCGAGGAGGACGAGAAGTAATTTTT 60.048 40.000 0.00 0.00 34.85 1.94
186 187 7.692460 TTTTGAAGCATCATATGAACTGACT 57.308 32.000 9.99 3.89 34.96 3.41
187 188 7.692460 TTTGAAGCATCATATGAACTGACTT 57.308 32.000 9.99 11.37 34.96 3.01
188 189 6.673154 TGAAGCATCATATGAACTGACTTG 57.327 37.500 9.99 2.69 0.00 3.16
189 190 6.175471 TGAAGCATCATATGAACTGACTTGT 58.825 36.000 9.99 0.00 0.00 3.16
190 191 6.093082 TGAAGCATCATATGAACTGACTTGTG 59.907 38.462 9.99 1.19 0.00 3.33
191 192 4.880120 AGCATCATATGAACTGACTTGTGG 59.120 41.667 9.99 0.00 0.00 4.17
192 193 4.497006 GCATCATATGAACTGACTTGTGGC 60.497 45.833 9.99 0.00 0.00 5.01
193 194 4.558226 TCATATGAACTGACTTGTGGCT 57.442 40.909 1.98 0.00 0.00 4.75
194 195 4.910195 TCATATGAACTGACTTGTGGCTT 58.090 39.130 1.98 0.00 0.00 4.35
195 196 4.696877 TCATATGAACTGACTTGTGGCTTG 59.303 41.667 1.98 0.00 0.00 4.01
196 197 1.679139 TGAACTGACTTGTGGCTTGG 58.321 50.000 0.00 0.00 0.00 3.61
197 198 1.211703 TGAACTGACTTGTGGCTTGGA 59.788 47.619 0.00 0.00 0.00 3.53
198 199 1.876156 GAACTGACTTGTGGCTTGGAG 59.124 52.381 0.00 0.00 0.00 3.86
199 200 1.131638 ACTGACTTGTGGCTTGGAGA 58.868 50.000 0.00 0.00 0.00 3.71
200 201 1.202698 ACTGACTTGTGGCTTGGAGAC 60.203 52.381 0.00 0.00 0.00 3.36
201 202 1.071385 CTGACTTGTGGCTTGGAGACT 59.929 52.381 0.00 0.00 0.00 3.24
202 203 2.300152 CTGACTTGTGGCTTGGAGACTA 59.700 50.000 0.00 0.00 0.00 2.59
203 204 2.906389 TGACTTGTGGCTTGGAGACTAT 59.094 45.455 0.00 0.00 0.00 2.12
204 205 3.265791 GACTTGTGGCTTGGAGACTATG 58.734 50.000 0.00 0.00 0.00 2.23
205 206 2.012673 CTTGTGGCTTGGAGACTATGC 58.987 52.381 0.00 0.00 0.00 3.14
206 207 1.279496 TGTGGCTTGGAGACTATGCT 58.721 50.000 0.00 0.00 0.00 3.79
207 208 2.466846 TGTGGCTTGGAGACTATGCTA 58.533 47.619 0.00 0.00 0.00 3.49
208 209 3.041211 TGTGGCTTGGAGACTATGCTAT 58.959 45.455 0.00 0.00 0.00 2.97
209 210 3.181462 TGTGGCTTGGAGACTATGCTATG 60.181 47.826 0.00 0.00 0.00 2.23
210 211 3.070159 GTGGCTTGGAGACTATGCTATGA 59.930 47.826 0.00 0.00 0.00 2.15
211 212 3.711190 TGGCTTGGAGACTATGCTATGAA 59.289 43.478 0.00 0.00 0.00 2.57
212 213 4.164030 TGGCTTGGAGACTATGCTATGAAA 59.836 41.667 0.00 0.00 0.00 2.69
213 214 4.513318 GGCTTGGAGACTATGCTATGAAAC 59.487 45.833 0.00 0.00 0.00 2.78
214 215 5.363939 GCTTGGAGACTATGCTATGAAACT 58.636 41.667 0.00 0.00 0.00 2.66
215 216 5.819901 GCTTGGAGACTATGCTATGAAACTT 59.180 40.000 0.00 0.00 0.00 2.66
216 217 6.238320 GCTTGGAGACTATGCTATGAAACTTG 60.238 42.308 0.00 0.00 0.00 3.16
217 218 6.544928 TGGAGACTATGCTATGAAACTTGA 57.455 37.500 0.00 0.00 0.00 3.02
218 219 6.946340 TGGAGACTATGCTATGAAACTTGAA 58.054 36.000 0.00 0.00 0.00 2.69
219 220 6.818644 TGGAGACTATGCTATGAAACTTGAAC 59.181 38.462 0.00 0.00 0.00 3.18
220 221 7.044798 GGAGACTATGCTATGAAACTTGAACT 58.955 38.462 0.00 0.00 0.00 3.01
221 222 8.198109 GGAGACTATGCTATGAAACTTGAACTA 58.802 37.037 0.00 0.00 0.00 2.24
222 223 9.757227 GAGACTATGCTATGAAACTTGAACTAT 57.243 33.333 0.00 0.00 0.00 2.12
223 224 9.539825 AGACTATGCTATGAAACTTGAACTATG 57.460 33.333 0.00 0.00 0.00 2.23
224 225 9.319143 GACTATGCTATGAAACTTGAACTATGT 57.681 33.333 0.00 0.00 0.00 2.29
225 226 9.102757 ACTATGCTATGAAACTTGAACTATGTG 57.897 33.333 0.00 0.00 0.00 3.21
226 227 7.928307 ATGCTATGAAACTTGAACTATGTGT 57.072 32.000 0.00 0.00 0.00 3.72
227 228 7.744087 TGCTATGAAACTTGAACTATGTGTT 57.256 32.000 0.00 0.00 42.38 3.32
228 229 7.584108 TGCTATGAAACTTGAACTATGTGTTG 58.416 34.615 0.00 0.00 39.30 3.33
229 230 7.228507 TGCTATGAAACTTGAACTATGTGTTGT 59.771 33.333 0.00 0.00 39.30 3.32
230 231 8.076178 GCTATGAAACTTGAACTATGTGTTGTT 58.924 33.333 0.00 0.00 39.30 2.83
231 232 9.950680 CTATGAAACTTGAACTATGTGTTGTTT 57.049 29.630 0.00 0.00 39.30 2.83
232 233 8.856490 ATGAAACTTGAACTATGTGTTGTTTC 57.144 30.769 0.00 0.00 42.74 2.78
233 234 7.821652 TGAAACTTGAACTATGTGTTGTTTCA 58.178 30.769 16.85 16.85 45.76 2.69
234 235 8.465999 TGAAACTTGAACTATGTGTTGTTTCAT 58.534 29.630 16.85 0.00 44.62 2.57
235 236 9.944663 GAAACTTGAACTATGTGTTGTTTCATA 57.055 29.630 0.00 0.00 42.40 2.15
279 280 2.261361 AAAAATCCAAGCGCCGGC 59.739 55.556 19.07 19.07 40.37 6.13
294 295 4.789075 GGCTGGTTGCGCATGCTG 62.789 66.667 12.75 10.56 44.05 4.41
295 296 4.789075 GCTGGTTGCGCATGCTGG 62.789 66.667 12.75 1.64 43.34 4.85
296 297 3.057548 CTGGTTGCGCATGCTGGA 61.058 61.111 12.75 7.90 43.34 3.86
297 298 3.047718 CTGGTTGCGCATGCTGGAG 62.048 63.158 12.75 0.39 43.34 3.86
298 299 3.058160 GGTTGCGCATGCTGGAGT 61.058 61.111 12.75 0.00 43.34 3.85
299 300 2.629656 GGTTGCGCATGCTGGAGTT 61.630 57.895 12.75 0.00 43.34 3.01
300 301 1.286880 GTTGCGCATGCTGGAGTTT 59.713 52.632 12.75 0.00 43.34 2.66
301 302 0.521291 GTTGCGCATGCTGGAGTTTA 59.479 50.000 12.75 0.00 43.34 2.01
302 303 1.133025 GTTGCGCATGCTGGAGTTTAT 59.867 47.619 12.75 0.00 43.34 1.40
303 304 1.016627 TGCGCATGCTGGAGTTTATC 58.983 50.000 17.13 0.00 43.34 1.75
304 305 0.041839 GCGCATGCTGGAGTTTATCG 60.042 55.000 17.13 0.00 38.39 2.92
305 306 0.041839 CGCATGCTGGAGTTTATCGC 60.042 55.000 17.13 0.00 0.00 4.58
306 307 1.016627 GCATGCTGGAGTTTATCGCA 58.983 50.000 11.37 0.00 34.83 5.10
307 308 1.268234 GCATGCTGGAGTTTATCGCAC 60.268 52.381 11.37 0.00 32.94 5.34
308 309 1.331756 CATGCTGGAGTTTATCGCACC 59.668 52.381 0.00 0.00 32.94 5.01
309 310 0.613260 TGCTGGAGTTTATCGCACCT 59.387 50.000 0.00 0.00 0.00 4.00
310 311 1.009829 GCTGGAGTTTATCGCACCTG 58.990 55.000 0.00 0.00 0.00 4.00
311 312 1.676014 GCTGGAGTTTATCGCACCTGT 60.676 52.381 0.00 0.00 0.00 4.00
312 313 2.699954 CTGGAGTTTATCGCACCTGTT 58.300 47.619 0.00 0.00 0.00 3.16
313 314 2.416547 CTGGAGTTTATCGCACCTGTTG 59.583 50.000 0.00 0.00 0.00 3.33
314 315 2.037902 TGGAGTTTATCGCACCTGTTGA 59.962 45.455 0.00 0.00 0.00 3.18
315 316 3.071479 GGAGTTTATCGCACCTGTTGAA 58.929 45.455 0.00 0.00 0.00 2.69
316 317 3.125316 GGAGTTTATCGCACCTGTTGAAG 59.875 47.826 0.00 0.00 0.00 3.02
317 318 3.740115 AGTTTATCGCACCTGTTGAAGT 58.260 40.909 0.00 0.00 0.00 3.01
318 319 3.498397 AGTTTATCGCACCTGTTGAAGTG 59.502 43.478 0.00 0.00 37.05 3.16
325 326 1.532868 CACCTGTTGAAGTGCTACAGC 59.467 52.381 7.16 0.00 45.26 4.40
326 327 0.792640 CCTGTTGAAGTGCTACAGCG 59.207 55.000 7.16 0.00 45.26 5.18
327 328 0.792640 CTGTTGAAGTGCTACAGCGG 59.207 55.000 0.00 0.00 41.95 5.52
328 329 1.227999 TGTTGAAGTGCTACAGCGGC 61.228 55.000 0.00 0.00 45.83 6.53
329 330 2.027073 TTGAAGTGCTACAGCGGCG 61.027 57.895 0.51 0.51 45.83 6.46
330 331 2.126071 GAAGTGCTACAGCGGCGA 60.126 61.111 12.98 0.00 45.83 5.54
331 332 2.125912 AAGTGCTACAGCGGCGAG 60.126 61.111 12.98 4.29 45.83 5.03
332 333 4.803426 AGTGCTACAGCGGCGAGC 62.803 66.667 12.98 11.74 45.83 5.03
342 343 3.235944 GCGGCGAGCTAAATTTTCC 57.764 52.632 12.98 0.00 44.04 3.13
343 344 0.450184 GCGGCGAGCTAAATTTTCCA 59.550 50.000 12.98 0.00 44.04 3.53
344 345 1.531883 GCGGCGAGCTAAATTTTCCAG 60.532 52.381 12.98 0.00 44.04 3.86
345 346 1.531883 CGGCGAGCTAAATTTTCCAGC 60.532 52.381 0.00 0.00 35.49 4.85
346 347 1.531883 GGCGAGCTAAATTTTCCAGCG 60.532 52.381 0.00 0.00 40.29 5.18
347 348 1.130561 GCGAGCTAAATTTTCCAGCGT 59.869 47.619 0.00 0.00 40.29 5.07
348 349 2.788065 GCGAGCTAAATTTTCCAGCGTC 60.788 50.000 0.00 0.00 40.29 5.19
349 350 2.673368 CGAGCTAAATTTTCCAGCGTCT 59.327 45.455 0.00 0.00 40.29 4.18
350 351 3.484229 CGAGCTAAATTTTCCAGCGTCTG 60.484 47.826 0.00 0.52 40.29 3.51
358 359 4.693532 CCAGCGTCTGGTAAAGCA 57.306 55.556 15.27 0.00 45.82 3.91
359 360 2.927004 CCAGCGTCTGGTAAAGCAA 58.073 52.632 15.27 0.00 45.82 3.91
360 361 0.517316 CCAGCGTCTGGTAAAGCAAC 59.483 55.000 15.27 0.00 45.82 4.17
361 362 0.517316 CAGCGTCTGGTAAAGCAACC 59.483 55.000 0.00 0.00 40.19 3.77
369 370 2.802719 TGGTAAAGCAACCATCCTTCC 58.197 47.619 1.78 0.00 44.68 3.46
370 371 2.100197 GGTAAAGCAACCATCCTTCCC 58.900 52.381 0.00 0.00 39.50 3.97
371 372 1.743394 GTAAAGCAACCATCCTTCCCG 59.257 52.381 0.00 0.00 0.00 5.14
372 373 0.112412 AAAGCAACCATCCTTCCCGT 59.888 50.000 0.00 0.00 0.00 5.28
373 374 0.609131 AAGCAACCATCCTTCCCGTG 60.609 55.000 0.00 0.00 0.00 4.94
374 375 2.700773 GCAACCATCCTTCCCGTGC 61.701 63.158 0.00 0.00 0.00 5.34
375 376 2.046314 AACCATCCTTCCCGTGCG 60.046 61.111 0.00 0.00 0.00 5.34
376 377 4.778143 ACCATCCTTCCCGTGCGC 62.778 66.667 0.00 0.00 0.00 6.09
377 378 4.473520 CCATCCTTCCCGTGCGCT 62.474 66.667 9.73 0.00 0.00 5.92
378 379 2.499205 CATCCTTCCCGTGCGCTA 59.501 61.111 9.73 0.00 0.00 4.26
379 380 1.153449 CATCCTTCCCGTGCGCTAA 60.153 57.895 9.73 0.00 0.00 3.09
380 381 0.742990 CATCCTTCCCGTGCGCTAAA 60.743 55.000 9.73 0.00 0.00 1.85
381 382 0.035820 ATCCTTCCCGTGCGCTAAAA 60.036 50.000 9.73 0.00 0.00 1.52
382 383 0.952010 TCCTTCCCGTGCGCTAAAAC 60.952 55.000 9.73 0.00 0.00 2.43
383 384 1.131826 CTTCCCGTGCGCTAAAACG 59.868 57.895 9.73 10.30 39.48 3.60
398 399 7.862961 CGCTAAAACGCTATTTCTTTTAGAG 57.137 36.000 13.35 8.24 38.76 2.43
399 400 6.408325 CGCTAAAACGCTATTTCTTTTAGAGC 59.592 38.462 13.35 4.14 38.76 4.09
400 401 7.241376 GCTAAAACGCTATTTCTTTTAGAGCA 58.759 34.615 13.35 0.00 38.76 4.26
401 402 7.216505 GCTAAAACGCTATTTCTTTTAGAGCAC 59.783 37.037 13.35 0.00 38.76 4.40
402 403 5.547181 AACGCTATTTCTTTTAGAGCACC 57.453 39.130 0.00 0.00 32.55 5.01
403 404 3.617263 ACGCTATTTCTTTTAGAGCACCG 59.383 43.478 0.00 0.00 32.55 4.94
404 405 3.544244 CGCTATTTCTTTTAGAGCACCGC 60.544 47.826 0.00 0.00 32.55 5.68
405 406 3.544244 GCTATTTCTTTTAGAGCACCGCG 60.544 47.826 0.00 0.00 33.26 6.46
406 407 0.515564 TTTCTTTTAGAGCACCGCGC 59.484 50.000 0.00 0.00 42.91 6.86
422 423 3.788766 GCTACCGCGTGCCTGTTG 61.789 66.667 4.92 0.00 0.00 3.33
423 424 2.048597 CTACCGCGTGCCTGTTGA 60.049 61.111 4.92 0.00 0.00 3.18
424 425 1.666553 CTACCGCGTGCCTGTTGAA 60.667 57.895 4.92 0.00 0.00 2.69
425 426 1.626654 CTACCGCGTGCCTGTTGAAG 61.627 60.000 4.92 0.00 0.00 3.02
426 427 2.089887 TACCGCGTGCCTGTTGAAGA 62.090 55.000 4.92 0.00 0.00 2.87
427 428 2.034879 CCGCGTGCCTGTTGAAGAT 61.035 57.895 4.92 0.00 0.00 2.40
428 429 1.133253 CGCGTGCCTGTTGAAGATG 59.867 57.895 0.00 0.00 0.00 2.90
429 430 1.154150 GCGTGCCTGTTGAAGATGC 60.154 57.895 0.00 0.00 0.00 3.91
430 431 1.580845 GCGTGCCTGTTGAAGATGCT 61.581 55.000 0.00 0.00 0.00 3.79
431 432 0.445436 CGTGCCTGTTGAAGATGCTC 59.555 55.000 0.00 0.00 0.00 4.26
432 433 1.818642 GTGCCTGTTGAAGATGCTCT 58.181 50.000 0.00 0.00 0.00 4.09
433 434 2.675032 CGTGCCTGTTGAAGATGCTCTA 60.675 50.000 0.00 0.00 0.00 2.43
434 435 3.338249 GTGCCTGTTGAAGATGCTCTAA 58.662 45.455 0.00 0.00 0.00 2.10
435 436 3.753272 GTGCCTGTTGAAGATGCTCTAAA 59.247 43.478 0.00 0.00 0.00 1.85
436 437 4.397417 GTGCCTGTTGAAGATGCTCTAAAT 59.603 41.667 0.00 0.00 0.00 1.40
437 438 5.586243 GTGCCTGTTGAAGATGCTCTAAATA 59.414 40.000 0.00 0.00 0.00 1.40
438 439 5.819379 TGCCTGTTGAAGATGCTCTAAATAG 59.181 40.000 0.00 0.00 0.00 1.73
451 452 0.465460 TAAATAGGGCCCTGCTTGCG 60.465 55.000 35.81 0.00 0.00 4.85
550 556 2.279069 CGCCCCTGTCTGTCTGTCT 61.279 63.158 0.00 0.00 0.00 3.41
551 557 1.294780 GCCCCTGTCTGTCTGTCTG 59.705 63.158 0.00 0.00 0.00 3.51
552 558 1.476007 GCCCCTGTCTGTCTGTCTGT 61.476 60.000 0.00 0.00 0.00 3.41
553 559 0.319728 CCCCTGTCTGTCTGTCTGTG 59.680 60.000 0.00 0.00 0.00 3.66
736 747 2.768834 GCTAGTAGCACCAACAGCC 58.231 57.895 17.47 0.00 41.89 4.85
737 748 0.744771 GCTAGTAGCACCAACAGCCC 60.745 60.000 17.47 0.00 41.89 5.19
787 798 2.422597 CAGAAACCACCAGATAACGCA 58.577 47.619 0.00 0.00 0.00 5.24
918 933 1.815421 CTCCTGGCCATTTCGTCCG 60.815 63.158 5.51 0.00 0.00 4.79
940 955 2.232941 TGTTAGACGCCGGATTTCTTCT 59.767 45.455 5.05 0.00 0.00 2.85
966 993 4.450419 AGCTGATGTATATTTGCGCTCTTC 59.550 41.667 9.73 0.00 0.00 2.87
972 999 5.660460 TGTATATTTGCGCTCTTCTCTTGA 58.340 37.500 9.73 0.00 0.00 3.02
1144 1176 7.585440 TCTTGAATCCATTCCATCCTGATTTA 58.415 34.615 0.00 0.00 35.97 1.40
1146 1178 7.828508 TGAATCCATTCCATCCTGATTTAAG 57.171 36.000 0.00 0.00 35.97 1.85
1153 1185 0.940126 ATCCTGATTTAAGCTGCGCG 59.060 50.000 0.00 0.00 0.00 6.86
1205 1240 6.628919 TCCTTTACAAAGAAAGTAACCTGC 57.371 37.500 3.25 0.00 38.28 4.85
1208 1243 2.594131 ACAAAGAAAGTAACCTGCCCC 58.406 47.619 0.00 0.00 0.00 5.80
1214 1253 0.475828 AAGTAACCTGCCCCTCACCT 60.476 55.000 0.00 0.00 0.00 4.00
1223 1262 1.996070 GCCCCTCACCTATTCCCCAC 61.996 65.000 0.00 0.00 0.00 4.61
1224 1263 1.696097 CCCCTCACCTATTCCCCACG 61.696 65.000 0.00 0.00 0.00 4.94
1227 1274 0.179073 CTCACCTATTCCCCACGCAG 60.179 60.000 0.00 0.00 0.00 5.18
1265 1312 3.290710 GGCAAATTTCAGCCCAGATCTA 58.709 45.455 8.08 0.00 45.18 1.98
1266 1313 3.893813 GGCAAATTTCAGCCCAGATCTAT 59.106 43.478 8.08 0.00 45.18 1.98
1269 1316 4.450305 AATTTCAGCCCAGATCTATGCT 57.550 40.909 11.37 11.37 33.52 3.79
1270 1317 3.939740 TTTCAGCCCAGATCTATGCTT 57.060 42.857 13.88 0.27 30.08 3.91
1271 1318 2.924757 TCAGCCCAGATCTATGCTTG 57.075 50.000 13.88 10.43 30.08 4.01
1272 1319 2.121948 TCAGCCCAGATCTATGCTTGT 58.878 47.619 13.88 0.00 30.08 3.16
1276 1342 3.201708 AGCCCAGATCTATGCTTGTTCTT 59.798 43.478 11.37 0.00 0.00 2.52
1284 1350 1.928868 ATGCTTGTTCTTTCCTGGGG 58.071 50.000 0.00 0.00 0.00 4.96
1291 1643 5.163509 GCTTGTTCTTTCCTGGGGATTAATC 60.164 44.000 6.93 6.93 0.00 1.75
1301 1653 9.554053 TTTCCTGGGGATTAATCTTGAAATTTA 57.446 29.630 14.95 0.00 0.00 1.40
1310 1662 5.567138 AATCTTGAAATTTACTCCTGCCG 57.433 39.130 0.00 0.00 0.00 5.69
1311 1663 2.747446 TCTTGAAATTTACTCCTGCCGC 59.253 45.455 0.00 0.00 0.00 6.53
1312 1664 1.459450 TGAAATTTACTCCTGCCGCC 58.541 50.000 0.00 0.00 0.00 6.13
1313 1665 0.377203 GAAATTTACTCCTGCCGCCG 59.623 55.000 0.00 0.00 0.00 6.46
1348 1702 8.642908 TGAAATCTATACAAATCGTACACCAG 57.357 34.615 0.00 0.00 31.27 4.00
1362 1718 3.402628 ACACCAGTTCGATTTACAGCT 57.597 42.857 0.00 0.00 0.00 4.24
1364 1720 2.345641 CACCAGTTCGATTTACAGCTCG 59.654 50.000 0.00 0.00 36.25 5.03
1374 1730 1.120530 TTACAGCTCGGAATCTCCCC 58.879 55.000 0.00 0.00 31.13 4.81
1385 1741 0.983378 AATCTCCCCCTGTTCCTCGG 60.983 60.000 0.00 0.00 0.00 4.63
1386 1742 3.787001 CTCCCCCTGTTCCTCGGC 61.787 72.222 0.00 0.00 0.00 5.54
1392 1748 1.544825 CCCTGTTCCTCGGCTCTTCA 61.545 60.000 0.00 0.00 0.00 3.02
1424 1800 2.636830 TGCCTCTGCAGAAATTAGCTC 58.363 47.619 18.85 1.29 44.23 4.09
1429 1805 4.383989 CCTCTGCAGAAATTAGCTCCTTCT 60.384 45.833 18.85 0.00 0.00 2.85
1454 1830 6.762702 TTTTGTTCCTCGGTTCTTTTTAGT 57.237 33.333 0.00 0.00 0.00 2.24
1460 1836 4.019950 TCCTCGGTTCTTTTTAGTTAGGGG 60.020 45.833 0.00 0.00 0.00 4.79
1472 1848 1.982958 AGTTAGGGGTGTTCATCCGTT 59.017 47.619 2.65 0.00 0.00 4.44
1540 1930 2.340328 GGGTTGACGATTGCCACCC 61.340 63.158 0.00 0.08 0.00 4.61
1545 1935 4.715523 ACGATTGCCACCCCACGG 62.716 66.667 0.00 0.00 0.00 4.94
1565 1962 3.725490 GGAGACGAATATACAACCACCC 58.275 50.000 0.00 0.00 0.00 4.61
1634 2032 0.598065 GGCCGTGCAACTGATTCTTT 59.402 50.000 0.00 0.00 31.75 2.52
1707 2105 2.546795 CGTTCAGAGCTTCAGACCTTGT 60.547 50.000 0.00 0.00 0.00 3.16
1735 2133 2.100197 GGGGGTAATTTCTCACAAGGC 58.900 52.381 0.00 0.00 0.00 4.35
1745 2147 4.263572 CACAAGGCGGGTGGGTGA 62.264 66.667 3.99 0.00 32.65 4.02
1746 2148 3.953775 ACAAGGCGGGTGGGTGAG 61.954 66.667 0.00 0.00 0.00 3.51
1747 2149 3.953775 CAAGGCGGGTGGGTGAGT 61.954 66.667 0.00 0.00 0.00 3.41
1748 2150 3.953775 AAGGCGGGTGGGTGAGTG 61.954 66.667 0.00 0.00 0.00 3.51
1774 2188 0.540365 TTGCTTAGCCTTGCTTGCCT 60.540 50.000 0.29 0.00 40.44 4.75
1791 2205 1.142748 CTTCGCCGGCAAGATCTCT 59.857 57.895 28.98 0.00 0.00 3.10
1792 2206 1.150567 CTTCGCCGGCAAGATCTCTG 61.151 60.000 28.98 6.54 0.00 3.35
1793 2207 3.267860 CGCCGGCAAGATCTCTGC 61.268 66.667 28.98 16.77 0.00 4.26
1794 2208 2.124983 GCCGGCAAGATCTCTGCA 60.125 61.111 24.80 0.00 0.00 4.41
1795 2209 2.178890 GCCGGCAAGATCTCTGCAG 61.179 63.158 24.80 19.79 0.00 4.41
1810 2224 2.281276 CAGTGCAGGCAGCTGTCA 60.281 61.111 22.50 8.45 45.94 3.58
1854 2269 0.614697 TGCAGCTGCTACCCAGTAGA 60.615 55.000 36.61 12.08 43.71 2.59
1899 2314 1.683385 GCAGCAAGAAACCATATCCCC 59.317 52.381 0.00 0.00 0.00 4.81
1908 2323 6.002653 AGAAACCATATCCCCTTCAGTAAC 57.997 41.667 0.00 0.00 0.00 2.50
1916 2331 1.541588 CCCCTTCAGTAACTTTGCTGC 59.458 52.381 2.43 0.00 40.19 5.25
1954 2536 0.553612 AGGCCCCCTCCTCTCAATTT 60.554 55.000 0.00 0.00 0.00 1.82
2027 2609 2.752358 CTTGGCTGTGAGGGCAGA 59.248 61.111 0.00 0.00 42.50 4.26
2029 2611 0.323178 CTTGGCTGTGAGGGCAGAAT 60.323 55.000 0.00 0.00 42.50 2.40
2035 2617 0.321564 TGTGAGGGCAGAATCCAACG 60.322 55.000 0.00 0.00 0.00 4.10
2135 2717 3.373830 AGGCTGAGATATCTATGGCCTC 58.626 50.000 26.60 12.49 39.38 4.70
2149 2731 3.340814 TGGCCTCAATTCTCTGACTTC 57.659 47.619 3.32 0.00 0.00 3.01
2150 2732 2.639347 TGGCCTCAATTCTCTGACTTCA 59.361 45.455 3.32 0.00 0.00 3.02
2158 2740 9.474920 CCTCAATTCTCTGACTTCATAGATAAC 57.525 37.037 0.00 0.00 30.68 1.89
2198 2781 2.047443 AACCCGAGGCTCGAGAGAC 61.047 63.158 36.47 5.29 43.74 3.36
2311 2898 0.535102 ACCGTTTCTGAACCTGCCAG 60.535 55.000 0.00 0.00 31.93 4.85
2345 2935 9.297586 CAGTAAGCTATCGTGTAAGTAAATCAA 57.702 33.333 0.00 0.00 0.00 2.57
2368 2958 4.131596 TGTTTGCTCTTAGTGTGTAACCC 58.868 43.478 0.00 0.00 34.36 4.11
2382 2972 6.655003 AGTGTGTAACCCATGAACAGATAAAG 59.345 38.462 0.00 0.00 34.36 1.85
2383 2973 6.653320 GTGTGTAACCCATGAACAGATAAAGA 59.347 38.462 0.00 0.00 34.36 2.52
2390 2981 8.336801 ACCCATGAACAGATAAAGAGTTAAAC 57.663 34.615 0.00 0.00 0.00 2.01
2406 2997 7.746703 AGAGTTAAACTGTTTCCACTATCCTT 58.253 34.615 9.38 0.00 0.00 3.36
2497 3097 4.211125 TCTAAGCTGTCCCTGTCTATCAG 58.789 47.826 0.00 0.00 43.27 2.90
2521 3121 3.157087 CCCTTTCTTGCTTTGCTTCCTA 58.843 45.455 0.00 0.00 0.00 2.94
2556 3158 4.213270 TGCATACAGCTTGTTGAAGTACAC 59.787 41.667 0.00 0.00 45.94 2.90
2557 3159 4.213270 GCATACAGCTTGTTGAAGTACACA 59.787 41.667 0.00 0.00 41.15 3.72
2567 3169 4.450757 TGTTGAAGTACACATCCATGTTCG 59.549 41.667 0.00 0.00 39.39 3.95
2606 3216 4.886489 TCACTCTCACCTATCATCACTCTG 59.114 45.833 0.00 0.00 0.00 3.35
2647 3268 2.665165 CCTCTAGCTGATCTCTGTGGT 58.335 52.381 0.00 0.00 0.00 4.16
2694 3315 8.893219 TTTTGGTTGTGTTGATATTAATGCAA 57.107 26.923 0.00 0.00 0.00 4.08
2721 3342 2.124445 GGGCGCGGGTCCTTTTAT 60.124 61.111 17.03 0.00 34.09 1.40
2722 3343 1.146707 GGGCGCGGGTCCTTTTATA 59.853 57.895 17.03 0.00 34.09 0.98
2723 3344 1.162181 GGGCGCGGGTCCTTTTATAC 61.162 60.000 17.03 0.00 34.09 1.47
2724 3345 0.179065 GGCGCGGGTCCTTTTATACT 60.179 55.000 8.83 0.00 0.00 2.12
2725 3346 1.069049 GGCGCGGGTCCTTTTATACTA 59.931 52.381 8.83 0.00 0.00 1.82
2732 3353 7.493645 GCGCGGGTCCTTTTATACTATATTAAT 59.506 37.037 8.83 0.00 0.00 1.40
2816 3437 5.630415 TGAAACCATATCCCCTTCAGTAG 57.370 43.478 0.00 0.00 0.00 2.57
2817 3438 5.036916 TGAAACCATATCCCCTTCAGTAGT 58.963 41.667 0.00 0.00 0.00 2.73
2839 3491 1.909302 CCCTCTGAACACCACTGGTAT 59.091 52.381 0.00 0.00 32.11 2.73
2869 3522 1.805254 CGAGGCAATGGAAAGGCTG 59.195 57.895 0.00 0.00 41.09 4.85
2872 3525 1.620323 GAGGCAATGGAAAGGCTGTTT 59.380 47.619 0.00 0.00 41.09 2.83
2913 3566 4.303282 GCGGCAATTTCTTAGGACAAAAA 58.697 39.130 0.00 0.00 0.00 1.94
2928 3581 1.068954 CAAAAAGAAGAGGGCGACTGC 60.069 52.381 0.00 0.00 41.71 4.40
2929 3582 0.108585 AAAAGAAGAGGGCGACTGCA 59.891 50.000 0.00 0.00 45.35 4.41
2945 3598 5.398169 CGACTGCAATAGACTGAGATATCC 58.602 45.833 0.00 0.00 0.00 2.59
3050 3703 4.350368 TGGAGTTGCTGTCAGAATGTTA 57.650 40.909 3.32 0.00 37.40 2.41
3265 3920 5.133660 ACTTCTATCCTCTCCAGAGCTTCTA 59.866 44.000 0.00 0.00 40.75 2.10
3269 3924 4.534647 TCCTCTCCAGAGCTTCTAAGAT 57.465 45.455 0.00 0.00 40.75 2.40
3373 4029 9.126151 CTTGTCAAGGAGAGTAGATACAGATTA 57.874 37.037 4.52 0.00 0.00 1.75
3482 4138 8.134202 TCCGGCTGATCATATTCTAATTCTAA 57.866 34.615 0.00 0.00 0.00 2.10
3537 4193 2.535588 CACTGCATTTTTGCTGGGC 58.464 52.632 9.21 0.00 37.94 5.36
3541 4197 2.028748 ACTGCATTTTTGCTGGGCTAAG 60.029 45.455 9.21 0.00 37.94 2.18
3564 4220 3.995048 TGTACTGACTACTGACTCACTCG 59.005 47.826 0.00 0.00 0.00 4.18
4030 4686 4.925390 TCATGCTGGGTATATGCCATAA 57.075 40.909 12.29 0.00 0.00 1.90
4040 4697 7.168219 TGGGTATATGCCATAATGTTTCTCTC 58.832 38.462 12.29 0.00 0.00 3.20
4058 4715 5.523369 TCTCTCGTAACTGCATACATGATG 58.477 41.667 0.00 0.00 38.73 3.07
4078 4735 2.105766 GGAGGCCTGAAATCAAGCATT 58.894 47.619 12.00 0.00 35.10 3.56
4095 4752 9.988350 ATCAAGCATTAAACACTAACTTTATCG 57.012 29.630 0.00 0.00 0.00 2.92
4179 4836 8.449397 GTTATTGTTGCCAAATTTGCATCATAA 58.551 29.630 12.92 12.23 38.01 1.90
4185 4842 5.638657 TGCCAAATTTGCATCATAAGTTGAC 59.361 36.000 12.92 0.56 37.11 3.18
4423 5080 0.615261 GACGAGGAAGGGGAAGAGGT 60.615 60.000 0.00 0.00 0.00 3.85
4637 5308 5.116983 GCATGTTTTATTGTTCCTGTTCGTG 59.883 40.000 0.00 0.00 0.00 4.35
4740 5412 0.033781 TTTGCCAGCCACTGCAATTC 59.966 50.000 0.00 0.00 41.13 2.17
4767 5439 5.341872 TTCATATTTTGAAGTGGCCATGG 57.658 39.130 9.72 7.63 39.44 3.66
4800 5485 5.897377 ACTAGTGTCATAAACAAATGCCC 57.103 39.130 0.00 0.00 40.31 5.36
4801 5486 3.848272 AGTGTCATAAACAAATGCCCG 57.152 42.857 0.00 0.00 40.31 6.13
4804 5489 2.752354 TGTCATAAACAAATGCCCGGAG 59.248 45.455 0.73 0.00 34.03 4.63
4805 5490 1.748493 TCATAAACAAATGCCCGGAGC 59.252 47.619 0.73 5.29 44.14 4.70
4814 5499 4.803426 GCCCGGAGCGAGAGTGTG 62.803 72.222 0.73 0.00 0.00 3.82
4815 5500 4.135153 CCCGGAGCGAGAGTGTGG 62.135 72.222 0.73 0.00 0.00 4.17
4816 5501 3.062466 CCGGAGCGAGAGTGTGGA 61.062 66.667 0.00 0.00 0.00 4.02
4817 5502 2.487428 CGGAGCGAGAGTGTGGAG 59.513 66.667 0.00 0.00 0.00 3.86
4818 5503 2.183046 GGAGCGAGAGTGTGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
4819 5504 2.202544 GAGCGAGAGTGTGGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
4820 5505 3.691744 GAGCGAGAGTGTGGAGCGG 62.692 68.421 0.00 0.00 0.00 5.52
4821 5506 3.749064 GCGAGAGTGTGGAGCGGA 61.749 66.667 0.00 0.00 0.00 5.54
4822 5507 2.487428 CGAGAGTGTGGAGCGGAG 59.513 66.667 0.00 0.00 0.00 4.63
4823 5508 2.888863 GAGAGTGTGGAGCGGAGG 59.111 66.667 0.00 0.00 0.00 4.30
4824 5509 1.679305 GAGAGTGTGGAGCGGAGGA 60.679 63.158 0.00 0.00 0.00 3.71
4825 5510 1.662438 GAGAGTGTGGAGCGGAGGAG 61.662 65.000 0.00 0.00 0.00 3.69
4827 5512 3.775654 GTGTGGAGCGGAGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
4836 5521 3.787001 GGAGGAGGGCCGAACAGG 61.787 72.222 0.00 0.00 44.97 4.00
4885 5827 1.876156 CTCACAGGCCAACAGAGAAAC 59.124 52.381 5.01 0.00 0.00 2.78
4892 5834 3.391296 AGGCCAACAGAGAAACTACTGAA 59.609 43.478 5.01 0.00 37.54 3.02
4917 5859 7.118422 AGAAATGTAGTAAGAACAGCGAAAC 57.882 36.000 0.00 0.00 0.00 2.78
4956 5898 2.549754 AGTTGTTGCCAAATGAGAGTCG 59.450 45.455 0.00 0.00 30.94 4.18
5103 6053 1.131693 CATAGACGGTATGCGGCGATA 59.868 52.381 12.98 2.75 0.00 2.92
5124 6074 0.396811 AGGTTCTCAAACAGACCCGG 59.603 55.000 0.00 0.00 38.79 5.73
5146 6099 3.884091 GCACGGACTCCTTTCTAGAGATA 59.116 47.826 0.00 0.00 35.27 1.98
5244 6197 0.836606 TCCTCGGCAAAGGCATCATA 59.163 50.000 0.00 0.00 43.71 2.15
5284 6237 2.401766 GGTGTCATTGCGCTCAGGG 61.402 63.158 9.73 0.00 0.00 4.45
5320 6273 2.383170 CGCAGCGCCTTTCTCAATA 58.617 52.632 2.29 0.00 0.00 1.90
5322 6275 1.267732 CGCAGCGCCTTTCTCAATAAG 60.268 52.381 2.29 0.00 0.00 1.73
5331 6284 6.677920 GCGCCTTTCTCAATAAGATTGCTAAA 60.678 38.462 0.00 0.00 32.82 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.423154 CCTGTTCCTTCCGCGCAC 61.423 66.667 8.75 0.00 0.00 5.34
10 11 3.894547 TTCCGCCTGTTCCTTCCGC 62.895 63.158 0.00 0.00 0.00 5.54
11 12 1.741770 CTTCCGCCTGTTCCTTCCG 60.742 63.158 0.00 0.00 0.00 4.30
12 13 2.041115 GCTTCCGCCTGTTCCTTCC 61.041 63.158 0.00 0.00 0.00 3.46
13 14 3.579685 GCTTCCGCCTGTTCCTTC 58.420 61.111 0.00 0.00 0.00 3.46
23 24 2.279784 CTCGATCTGGGCTTCCGC 60.280 66.667 0.00 0.00 0.00 5.54
24 25 2.279784 GCTCGATCTGGGCTTCCG 60.280 66.667 2.68 0.00 0.00 4.30
25 26 1.227497 CAGCTCGATCTGGGCTTCC 60.227 63.158 8.41 0.00 33.74 3.46
26 27 4.434685 CAGCTCGATCTGGGCTTC 57.565 61.111 8.41 0.00 33.74 3.86
32 33 0.671251 GTAGGTCCCAGCTCGATCTG 59.329 60.000 9.32 9.32 0.00 2.90
33 34 0.820074 CGTAGGTCCCAGCTCGATCT 60.820 60.000 0.00 0.00 0.00 2.75
34 35 1.102222 ACGTAGGTCCCAGCTCGATC 61.102 60.000 0.00 0.00 0.00 3.69
35 36 1.076923 ACGTAGGTCCCAGCTCGAT 60.077 57.895 0.00 0.00 0.00 3.59
36 37 1.748122 GACGTAGGTCCCAGCTCGA 60.748 63.158 4.15 0.00 37.19 4.04
37 38 2.799371 GACGTAGGTCCCAGCTCG 59.201 66.667 4.15 0.00 37.19 5.03
38 39 1.748122 TCGACGTAGGTCCCAGCTC 60.748 63.158 9.86 0.00 40.17 4.09
39 40 2.045131 GTCGACGTAGGTCCCAGCT 61.045 63.158 9.86 0.00 40.17 4.24
40 41 2.488820 GTCGACGTAGGTCCCAGC 59.511 66.667 9.86 0.00 40.17 4.85
41 42 1.378250 AGGTCGACGTAGGTCCCAG 60.378 63.158 9.40 0.00 40.17 4.45
42 43 1.676635 CAGGTCGACGTAGGTCCCA 60.677 63.158 10.91 0.00 40.17 4.37
43 44 2.413142 CCAGGTCGACGTAGGTCCC 61.413 68.421 10.91 6.40 40.17 4.46
44 45 2.413142 CCCAGGTCGACGTAGGTCC 61.413 68.421 13.65 0.00 40.17 4.46
45 46 0.750911 ATCCCAGGTCGACGTAGGTC 60.751 60.000 19.72 5.47 39.89 3.85
46 47 1.035932 CATCCCAGGTCGACGTAGGT 61.036 60.000 19.72 5.19 0.00 3.08
47 48 0.750546 TCATCCCAGGTCGACGTAGG 60.751 60.000 15.42 15.42 0.00 3.18
48 49 1.001268 CATCATCCCAGGTCGACGTAG 60.001 57.143 10.91 3.31 0.00 3.51
49 50 1.029681 CATCATCCCAGGTCGACGTA 58.970 55.000 10.91 0.00 0.00 3.57
50 51 0.683179 TCATCATCCCAGGTCGACGT 60.683 55.000 9.92 7.31 0.00 4.34
51 52 0.459899 TTCATCATCCCAGGTCGACG 59.540 55.000 9.92 0.00 0.00 5.12
52 53 2.691409 TTTCATCATCCCAGGTCGAC 57.309 50.000 7.13 7.13 0.00 4.20
53 54 3.433598 GGATTTTCATCATCCCAGGTCGA 60.434 47.826 0.00 0.00 35.03 4.20
54 55 2.880890 GGATTTTCATCATCCCAGGTCG 59.119 50.000 0.00 0.00 35.03 4.79
55 56 4.140536 GAGGATTTTCATCATCCCAGGTC 58.859 47.826 0.00 0.00 41.27 3.85
56 57 3.528905 TGAGGATTTTCATCATCCCAGGT 59.471 43.478 0.00 0.00 41.27 4.00
57 58 4.142790 CTGAGGATTTTCATCATCCCAGG 58.857 47.826 8.48 0.00 41.27 4.45
58 59 4.579340 CACTGAGGATTTTCATCATCCCAG 59.421 45.833 12.34 12.34 41.27 4.45
59 60 4.529897 CACTGAGGATTTTCATCATCCCA 58.470 43.478 0.00 0.00 41.27 4.37
60 61 3.887716 CCACTGAGGATTTTCATCATCCC 59.112 47.826 0.00 0.00 41.27 3.85
61 62 3.317430 GCCACTGAGGATTTTCATCATCC 59.683 47.826 0.00 0.00 39.14 3.51
62 63 4.205587 AGCCACTGAGGATTTTCATCATC 58.794 43.478 0.00 0.00 36.54 2.92
63 64 4.246712 AGCCACTGAGGATTTTCATCAT 57.753 40.909 0.00 0.00 36.54 2.45
64 65 3.726557 AGCCACTGAGGATTTTCATCA 57.273 42.857 0.00 0.00 41.22 3.07
65 66 4.813697 GTCTAGCCACTGAGGATTTTCATC 59.186 45.833 0.00 0.00 41.22 2.92
66 67 4.681781 CGTCTAGCCACTGAGGATTTTCAT 60.682 45.833 0.00 0.00 41.22 2.57
67 68 3.368427 CGTCTAGCCACTGAGGATTTTCA 60.368 47.826 0.00 0.00 41.22 2.69
68 69 3.190874 CGTCTAGCCACTGAGGATTTTC 58.809 50.000 0.00 0.00 41.22 2.29
69 70 2.678190 GCGTCTAGCCACTGAGGATTTT 60.678 50.000 0.00 0.00 41.22 1.82
70 71 1.134670 GCGTCTAGCCACTGAGGATTT 60.135 52.381 0.00 0.00 41.22 2.17
71 72 0.461961 GCGTCTAGCCACTGAGGATT 59.538 55.000 0.00 0.00 41.22 3.01
72 73 1.729470 CGCGTCTAGCCACTGAGGAT 61.729 60.000 0.00 0.00 44.76 3.24
73 74 2.407428 CGCGTCTAGCCACTGAGGA 61.407 63.158 0.00 0.00 44.76 3.71
74 75 2.103143 CGCGTCTAGCCACTGAGG 59.897 66.667 0.00 0.00 44.76 3.86
75 76 0.388649 AAACGCGTCTAGCCACTGAG 60.389 55.000 14.44 0.00 44.76 3.35
76 77 0.883153 TAAACGCGTCTAGCCACTGA 59.117 50.000 14.44 0.00 44.76 3.41
77 78 0.989890 GTAAACGCGTCTAGCCACTG 59.010 55.000 14.44 0.00 44.76 3.66
78 79 0.455633 CGTAAACGCGTCTAGCCACT 60.456 55.000 14.44 0.00 44.76 4.00
79 80 1.986154 CGTAAACGCGTCTAGCCAC 59.014 57.895 14.44 3.50 44.76 5.01
80 81 4.463597 CGTAAACGCGTCTAGCCA 57.536 55.556 14.44 0.00 44.76 4.75
90 91 1.372004 TGGTCTGACGGCGTAAACG 60.372 57.895 14.74 1.33 43.27 3.60
91 92 0.598158 TGTGGTCTGACGGCGTAAAC 60.598 55.000 14.74 11.49 0.00 2.01
92 93 0.598158 GTGTGGTCTGACGGCGTAAA 60.598 55.000 14.74 3.13 0.00 2.01
93 94 1.007038 GTGTGGTCTGACGGCGTAA 60.007 57.895 14.74 4.02 0.00 3.18
94 95 2.646719 GTGTGGTCTGACGGCGTA 59.353 61.111 14.74 0.00 0.00 4.42
95 96 4.295119 GGTGTGGTCTGACGGCGT 62.295 66.667 14.65 14.65 0.00 5.68
96 97 3.589654 ATGGTGTGGTCTGACGGCG 62.590 63.158 4.80 4.80 0.00 6.46
97 98 1.741770 GATGGTGTGGTCTGACGGC 60.742 63.158 1.07 0.00 0.00 5.68
98 99 1.446099 CGATGGTGTGGTCTGACGG 60.446 63.158 1.07 0.00 0.00 4.79
99 100 0.456824 CTCGATGGTGTGGTCTGACG 60.457 60.000 1.07 0.00 0.00 4.35
100 101 0.108615 CCTCGATGGTGTGGTCTGAC 60.109 60.000 0.00 0.00 0.00 3.51
101 102 0.251608 TCCTCGATGGTGTGGTCTGA 60.252 55.000 0.00 0.00 37.07 3.27
102 103 0.174389 CTCCTCGATGGTGTGGTCTG 59.826 60.000 0.00 0.00 37.07 3.51
103 104 0.972983 CCTCCTCGATGGTGTGGTCT 60.973 60.000 0.00 0.00 37.07 3.85
104 105 0.970937 TCCTCCTCGATGGTGTGGTC 60.971 60.000 0.00 0.00 37.07 4.02
105 106 1.078528 TCCTCCTCGATGGTGTGGT 59.921 57.895 0.00 0.00 37.07 4.16
106 107 1.517832 GTCCTCCTCGATGGTGTGG 59.482 63.158 0.00 0.00 37.07 4.17
107 108 1.139734 CGTCCTCCTCGATGGTGTG 59.860 63.158 0.00 0.00 37.07 3.82
108 109 1.001269 TCGTCCTCCTCGATGGTGT 60.001 57.895 0.00 0.00 37.07 4.16
109 110 0.748367 TCTCGTCCTCCTCGATGGTG 60.748 60.000 0.00 0.00 36.73 4.17
110 111 0.034380 TTCTCGTCCTCCTCGATGGT 60.034 55.000 0.00 0.00 36.73 3.55
111 112 0.665835 CTTCTCGTCCTCCTCGATGG 59.334 60.000 0.00 0.00 36.73 3.51
112 113 1.384525 ACTTCTCGTCCTCCTCGATG 58.615 55.000 0.00 0.00 36.73 3.84
113 114 3.278668 TTACTTCTCGTCCTCCTCGAT 57.721 47.619 0.00 0.00 36.73 3.59
114 115 2.775911 TTACTTCTCGTCCTCCTCGA 57.224 50.000 0.00 0.00 35.96 4.04
115 116 4.373348 AAATTACTTCTCGTCCTCCTCG 57.627 45.455 0.00 0.00 0.00 4.63
160 161 9.399797 AGTCAGTTCATATGATGCTTCAAAATA 57.600 29.630 6.17 0.00 34.96 1.40
161 162 8.289939 AGTCAGTTCATATGATGCTTCAAAAT 57.710 30.769 6.17 1.14 34.96 1.82
162 163 7.692460 AGTCAGTTCATATGATGCTTCAAAA 57.308 32.000 6.17 0.00 34.96 2.44
163 164 7.175467 ACAAGTCAGTTCATATGATGCTTCAAA 59.825 33.333 6.17 0.00 34.96 2.69
164 165 6.656270 ACAAGTCAGTTCATATGATGCTTCAA 59.344 34.615 6.17 0.00 34.96 2.69
165 166 6.093082 CACAAGTCAGTTCATATGATGCTTCA 59.907 38.462 6.17 4.57 36.00 3.02
166 167 6.457934 CCACAAGTCAGTTCATATGATGCTTC 60.458 42.308 6.17 4.50 0.00 3.86
167 168 5.356190 CCACAAGTCAGTTCATATGATGCTT 59.644 40.000 6.17 7.90 0.00 3.91
168 169 4.880120 CCACAAGTCAGTTCATATGATGCT 59.120 41.667 6.17 5.42 0.00 3.79
169 170 4.497006 GCCACAAGTCAGTTCATATGATGC 60.497 45.833 6.17 3.06 0.00 3.91
170 171 4.880120 AGCCACAAGTCAGTTCATATGATG 59.120 41.667 6.17 3.00 0.00 3.07
171 172 5.108187 AGCCACAAGTCAGTTCATATGAT 57.892 39.130 6.17 0.00 0.00 2.45
172 173 4.558226 AGCCACAAGTCAGTTCATATGA 57.442 40.909 0.00 0.00 0.00 2.15
173 174 4.142534 CCAAGCCACAAGTCAGTTCATATG 60.143 45.833 0.00 0.00 0.00 1.78
174 175 4.012374 CCAAGCCACAAGTCAGTTCATAT 58.988 43.478 0.00 0.00 0.00 1.78
175 176 3.072330 TCCAAGCCACAAGTCAGTTCATA 59.928 43.478 0.00 0.00 0.00 2.15
176 177 2.158623 TCCAAGCCACAAGTCAGTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
177 178 1.211703 TCCAAGCCACAAGTCAGTTCA 59.788 47.619 0.00 0.00 0.00 3.18
178 179 1.876156 CTCCAAGCCACAAGTCAGTTC 59.124 52.381 0.00 0.00 0.00 3.01
179 180 1.490490 TCTCCAAGCCACAAGTCAGTT 59.510 47.619 0.00 0.00 0.00 3.16
180 181 1.131638 TCTCCAAGCCACAAGTCAGT 58.868 50.000 0.00 0.00 0.00 3.41
181 182 1.071385 AGTCTCCAAGCCACAAGTCAG 59.929 52.381 0.00 0.00 0.00 3.51
182 183 1.131638 AGTCTCCAAGCCACAAGTCA 58.868 50.000 0.00 0.00 0.00 3.41
183 184 3.265791 CATAGTCTCCAAGCCACAAGTC 58.734 50.000 0.00 0.00 0.00 3.01
184 185 2.616510 GCATAGTCTCCAAGCCACAAGT 60.617 50.000 0.00 0.00 0.00 3.16
185 186 2.012673 GCATAGTCTCCAAGCCACAAG 58.987 52.381 0.00 0.00 0.00 3.16
186 187 1.630369 AGCATAGTCTCCAAGCCACAA 59.370 47.619 0.00 0.00 0.00 3.33
187 188 1.279496 AGCATAGTCTCCAAGCCACA 58.721 50.000 0.00 0.00 0.00 4.17
188 189 3.070159 TCATAGCATAGTCTCCAAGCCAC 59.930 47.826 0.00 0.00 0.00 5.01
189 190 3.308401 TCATAGCATAGTCTCCAAGCCA 58.692 45.455 0.00 0.00 0.00 4.75
190 191 4.342862 TTCATAGCATAGTCTCCAAGCC 57.657 45.455 0.00 0.00 0.00 4.35
191 192 5.363939 AGTTTCATAGCATAGTCTCCAAGC 58.636 41.667 0.00 0.00 0.00 4.01
192 193 7.044181 TCAAGTTTCATAGCATAGTCTCCAAG 58.956 38.462 0.00 0.00 0.00 3.61
193 194 6.946340 TCAAGTTTCATAGCATAGTCTCCAA 58.054 36.000 0.00 0.00 0.00 3.53
194 195 6.544928 TCAAGTTTCATAGCATAGTCTCCA 57.455 37.500 0.00 0.00 0.00 3.86
195 196 7.044798 AGTTCAAGTTTCATAGCATAGTCTCC 58.955 38.462 0.00 0.00 0.00 3.71
196 197 9.757227 ATAGTTCAAGTTTCATAGCATAGTCTC 57.243 33.333 0.00 0.00 0.00 3.36
197 198 9.539825 CATAGTTCAAGTTTCATAGCATAGTCT 57.460 33.333 0.00 0.00 0.00 3.24
198 199 9.319143 ACATAGTTCAAGTTTCATAGCATAGTC 57.681 33.333 0.00 0.00 0.00 2.59
199 200 9.102757 CACATAGTTCAAGTTTCATAGCATAGT 57.897 33.333 0.00 0.00 0.00 2.12
200 201 9.102757 ACACATAGTTCAAGTTTCATAGCATAG 57.897 33.333 0.00 0.00 0.00 2.23
201 202 9.448438 AACACATAGTTCAAGTTTCATAGCATA 57.552 29.630 0.00 0.00 34.74 3.14
202 203 7.928307 ACACATAGTTCAAGTTTCATAGCAT 57.072 32.000 0.00 0.00 0.00 3.79
203 204 7.228507 ACAACACATAGTTCAAGTTTCATAGCA 59.771 33.333 0.00 0.00 38.74 3.49
204 205 7.584987 ACAACACATAGTTCAAGTTTCATAGC 58.415 34.615 0.00 0.00 38.74 2.97
205 206 9.950680 AAACAACACATAGTTCAAGTTTCATAG 57.049 29.630 0.00 0.00 38.74 2.23
206 207 9.944663 GAAACAACACATAGTTCAAGTTTCATA 57.055 29.630 0.00 0.00 43.27 2.15
207 208 8.465999 TGAAACAACACATAGTTCAAGTTTCAT 58.534 29.630 15.20 0.00 45.57 2.57
208 209 7.821652 TGAAACAACACATAGTTCAAGTTTCA 58.178 30.769 15.20 15.20 46.76 2.69
209 210 8.856490 ATGAAACAACACATAGTTCAAGTTTC 57.144 30.769 0.00 0.00 43.64 2.78
262 263 2.261361 GCCGGCGCTTGGATTTTT 59.739 55.556 12.58 0.00 0.00 1.94
263 264 2.676471 AGCCGGCGCTTGGATTTT 60.676 55.556 23.20 0.00 45.55 1.82
264 265 3.443045 CAGCCGGCGCTTGGATTT 61.443 61.111 23.20 0.00 45.55 2.17
277 278 4.789075 CAGCATGCGCAACCAGCC 62.789 66.667 17.11 0.00 42.27 4.85
278 279 4.789075 CCAGCATGCGCAACCAGC 62.789 66.667 17.11 16.68 42.27 4.85
279 280 3.047718 CTCCAGCATGCGCAACCAG 62.048 63.158 17.11 6.13 42.27 4.00
280 281 3.057548 CTCCAGCATGCGCAACCA 61.058 61.111 17.11 0.00 42.27 3.67
281 282 2.146073 AAACTCCAGCATGCGCAACC 62.146 55.000 17.11 8.59 42.27 3.77
282 283 0.521291 TAAACTCCAGCATGCGCAAC 59.479 50.000 17.11 10.43 42.27 4.17
283 284 1.401552 GATAAACTCCAGCATGCGCAA 59.598 47.619 17.11 0.00 42.27 4.85
284 285 1.016627 GATAAACTCCAGCATGCGCA 58.983 50.000 14.96 14.96 42.27 6.09
285 286 0.041839 CGATAAACTCCAGCATGCGC 60.042 55.000 13.01 0.00 38.99 6.09
286 287 0.041839 GCGATAAACTCCAGCATGCG 60.042 55.000 13.01 7.31 31.97 4.73
287 288 1.016627 TGCGATAAACTCCAGCATGC 58.983 50.000 10.51 10.51 32.43 4.06
288 289 1.331756 GGTGCGATAAACTCCAGCATG 59.668 52.381 0.00 0.00 40.11 4.06
289 290 1.210478 AGGTGCGATAAACTCCAGCAT 59.790 47.619 0.00 0.00 40.11 3.79
290 291 0.613260 AGGTGCGATAAACTCCAGCA 59.387 50.000 0.00 0.00 35.27 4.41
291 292 1.009829 CAGGTGCGATAAACTCCAGC 58.990 55.000 0.00 0.00 0.00 4.85
292 293 2.386661 ACAGGTGCGATAAACTCCAG 57.613 50.000 0.00 0.00 0.00 3.86
293 294 2.037902 TCAACAGGTGCGATAAACTCCA 59.962 45.455 0.00 0.00 0.00 3.86
294 295 2.695359 TCAACAGGTGCGATAAACTCC 58.305 47.619 0.00 0.00 0.00 3.85
295 296 3.746492 ACTTCAACAGGTGCGATAAACTC 59.254 43.478 0.00 0.00 0.00 3.01
296 297 3.498397 CACTTCAACAGGTGCGATAAACT 59.502 43.478 0.00 0.00 0.00 2.66
297 298 3.810373 CACTTCAACAGGTGCGATAAAC 58.190 45.455 0.00 0.00 0.00 2.01
298 299 2.225491 GCACTTCAACAGGTGCGATAAA 59.775 45.455 2.40 0.00 46.87 1.40
299 300 1.804151 GCACTTCAACAGGTGCGATAA 59.196 47.619 2.40 0.00 46.87 1.75
300 301 1.438651 GCACTTCAACAGGTGCGATA 58.561 50.000 2.40 0.00 46.87 2.92
301 302 2.247790 GCACTTCAACAGGTGCGAT 58.752 52.632 2.40 0.00 46.87 4.58
302 303 3.731136 GCACTTCAACAGGTGCGA 58.269 55.556 2.40 0.00 46.87 5.10
305 306 1.532868 GCTGTAGCACTTCAACAGGTG 59.467 52.381 0.00 0.00 40.76 4.00
306 307 1.873903 CGCTGTAGCACTTCAACAGGT 60.874 52.381 4.59 0.00 40.76 4.00
307 308 0.792640 CGCTGTAGCACTTCAACAGG 59.207 55.000 4.59 0.00 40.76 4.00
308 309 0.792640 CCGCTGTAGCACTTCAACAG 59.207 55.000 4.59 0.00 42.80 3.16
309 310 1.227999 GCCGCTGTAGCACTTCAACA 61.228 55.000 4.59 0.00 42.21 3.33
310 311 1.497722 GCCGCTGTAGCACTTCAAC 59.502 57.895 4.59 0.00 42.21 3.18
311 312 2.027073 CGCCGCTGTAGCACTTCAA 61.027 57.895 4.59 0.00 42.21 2.69
312 313 2.432456 CGCCGCTGTAGCACTTCA 60.432 61.111 4.59 0.00 42.21 3.02
313 314 2.126071 TCGCCGCTGTAGCACTTC 60.126 61.111 4.59 0.00 42.21 3.01
314 315 2.125912 CTCGCCGCTGTAGCACTT 60.126 61.111 4.59 0.00 42.21 3.16
315 316 4.803426 GCTCGCCGCTGTAGCACT 62.803 66.667 4.59 0.00 42.21 4.40
324 325 0.450184 TGGAAAATTTAGCTCGCCGC 59.550 50.000 0.00 0.00 39.57 6.53
325 326 1.531883 GCTGGAAAATTTAGCTCGCCG 60.532 52.381 4.50 0.00 34.70 6.46
326 327 1.531883 CGCTGGAAAATTTAGCTCGCC 60.532 52.381 9.21 0.00 35.36 5.54
327 328 1.130561 ACGCTGGAAAATTTAGCTCGC 59.869 47.619 9.21 1.02 35.36 5.03
328 329 2.673368 AGACGCTGGAAAATTTAGCTCG 59.327 45.455 9.21 4.64 35.36 5.03
329 330 4.008539 CAGACGCTGGAAAATTTAGCTC 57.991 45.455 9.21 6.41 35.36 4.09
342 343 0.517316 GGTTGCTTTACCAGACGCTG 59.483 55.000 0.52 0.52 38.12 5.18
343 344 0.107831 TGGTTGCTTTACCAGACGCT 59.892 50.000 2.38 0.00 43.14 5.07
344 345 2.624169 TGGTTGCTTTACCAGACGC 58.376 52.632 2.38 0.00 43.14 5.19
350 351 2.100197 GGGAAGGATGGTTGCTTTACC 58.900 52.381 0.00 0.00 33.10 2.85
351 352 1.743394 CGGGAAGGATGGTTGCTTTAC 59.257 52.381 0.00 0.00 33.10 2.01
352 353 1.353022 ACGGGAAGGATGGTTGCTTTA 59.647 47.619 0.00 0.00 33.10 1.85
353 354 0.112412 ACGGGAAGGATGGTTGCTTT 59.888 50.000 0.00 0.00 33.10 3.51
354 355 0.609131 CACGGGAAGGATGGTTGCTT 60.609 55.000 0.00 0.00 36.05 3.91
355 356 1.002134 CACGGGAAGGATGGTTGCT 60.002 57.895 0.00 0.00 0.00 3.91
356 357 2.700773 GCACGGGAAGGATGGTTGC 61.701 63.158 0.00 0.00 0.00 4.17
357 358 2.398554 CGCACGGGAAGGATGGTTG 61.399 63.158 0.00 0.00 0.00 3.77
358 359 2.046314 CGCACGGGAAGGATGGTT 60.046 61.111 0.00 0.00 0.00 3.67
359 360 4.778143 GCGCACGGGAAGGATGGT 62.778 66.667 0.30 0.00 0.00 3.55
360 361 2.587322 TTAGCGCACGGGAAGGATGG 62.587 60.000 11.47 0.00 0.00 3.51
361 362 0.742990 TTTAGCGCACGGGAAGGATG 60.743 55.000 11.47 0.00 0.00 3.51
362 363 0.035820 TTTTAGCGCACGGGAAGGAT 60.036 50.000 11.47 0.00 0.00 3.24
363 364 0.952010 GTTTTAGCGCACGGGAAGGA 60.952 55.000 11.47 0.00 0.00 3.36
364 365 1.500396 GTTTTAGCGCACGGGAAGG 59.500 57.895 11.47 0.00 0.00 3.46
365 366 1.131826 CGTTTTAGCGCACGGGAAG 59.868 57.895 11.47 0.00 32.58 3.46
366 367 3.246064 CGTTTTAGCGCACGGGAA 58.754 55.556 11.47 0.00 32.58 3.97
374 375 6.408325 GCTCTAAAAGAAATAGCGTTTTAGCG 59.592 38.462 8.34 4.81 40.91 4.26
375 376 7.216505 GTGCTCTAAAAGAAATAGCGTTTTAGC 59.783 37.037 8.34 0.00 40.91 3.09
376 377 7.692705 GGTGCTCTAAAAGAAATAGCGTTTTAG 59.307 37.037 7.26 7.26 41.82 1.85
377 378 7.524065 GGTGCTCTAAAAGAAATAGCGTTTTA 58.476 34.615 0.00 0.00 35.95 1.52
378 379 6.379386 GGTGCTCTAAAAGAAATAGCGTTTT 58.621 36.000 0.00 0.00 35.95 2.43
379 380 5.390567 CGGTGCTCTAAAAGAAATAGCGTTT 60.391 40.000 0.00 0.00 35.95 3.60
380 381 4.092968 CGGTGCTCTAAAAGAAATAGCGTT 59.907 41.667 0.00 0.00 35.95 4.84
381 382 3.617263 CGGTGCTCTAAAAGAAATAGCGT 59.383 43.478 0.00 0.00 35.95 5.07
382 383 3.544244 GCGGTGCTCTAAAAGAAATAGCG 60.544 47.826 0.00 0.00 35.95 4.26
383 384 3.544244 CGCGGTGCTCTAAAAGAAATAGC 60.544 47.826 0.00 0.00 0.00 2.97
384 385 3.544244 GCGCGGTGCTCTAAAAGAAATAG 60.544 47.826 8.83 0.00 41.73 1.73
385 386 2.350498 GCGCGGTGCTCTAAAAGAAATA 59.650 45.455 8.83 0.00 41.73 1.40
386 387 1.130561 GCGCGGTGCTCTAAAAGAAAT 59.869 47.619 8.83 0.00 41.73 2.17
387 388 0.515564 GCGCGGTGCTCTAAAAGAAA 59.484 50.000 8.83 0.00 41.73 2.52
388 389 2.159181 GCGCGGTGCTCTAAAAGAA 58.841 52.632 8.83 0.00 41.73 2.52
389 390 3.870606 GCGCGGTGCTCTAAAAGA 58.129 55.556 8.83 0.00 41.73 2.52
405 406 3.788766 CAACAGGCACGCGGTAGC 61.789 66.667 12.47 11.76 40.74 3.58
406 407 1.626654 CTTCAACAGGCACGCGGTAG 61.627 60.000 12.47 0.13 0.00 3.18
407 408 1.666553 CTTCAACAGGCACGCGGTA 60.667 57.895 12.47 0.00 0.00 4.02
408 409 2.731691 ATCTTCAACAGGCACGCGGT 62.732 55.000 12.47 0.00 0.00 5.68
409 410 2.034879 ATCTTCAACAGGCACGCGG 61.035 57.895 12.47 0.00 0.00 6.46
410 411 1.133253 CATCTTCAACAGGCACGCG 59.867 57.895 3.53 3.53 0.00 6.01
411 412 1.154150 GCATCTTCAACAGGCACGC 60.154 57.895 0.00 0.00 0.00 5.34
412 413 0.445436 GAGCATCTTCAACAGGCACG 59.555 55.000 0.00 0.00 0.00 5.34
425 426 2.877708 GCAGGGCCCTATTTAGAGCATC 60.878 54.545 28.13 0.00 0.00 3.91
426 427 1.074566 GCAGGGCCCTATTTAGAGCAT 59.925 52.381 28.13 0.00 0.00 3.79
427 428 0.474184 GCAGGGCCCTATTTAGAGCA 59.526 55.000 28.13 0.00 0.00 4.26
428 429 0.767998 AGCAGGGCCCTATTTAGAGC 59.232 55.000 28.13 22.19 0.00 4.09
429 430 2.856222 CAAGCAGGGCCCTATTTAGAG 58.144 52.381 28.13 11.88 0.00 2.43
430 431 1.133792 GCAAGCAGGGCCCTATTTAGA 60.134 52.381 28.13 0.00 0.00 2.10
431 432 1.322442 GCAAGCAGGGCCCTATTTAG 58.678 55.000 28.13 13.62 0.00 1.85
432 433 0.465460 CGCAAGCAGGGCCCTATTTA 60.465 55.000 28.13 0.00 0.00 1.40
433 434 1.754234 CGCAAGCAGGGCCCTATTT 60.754 57.895 28.13 19.14 0.00 1.40
434 435 2.124151 CGCAAGCAGGGCCCTATT 60.124 61.111 28.13 20.06 0.00 1.73
451 452 2.191641 GGATCCTCTGTGGGCAGC 59.808 66.667 3.84 0.00 42.29 5.25
495 501 3.977244 GCCCGCCAACAACCAGTG 61.977 66.667 0.00 0.00 0.00 3.66
527 533 0.535102 AGACAGACAGGGGCGTTTTG 60.535 55.000 0.00 0.00 0.00 2.44
550 556 2.179547 CACGCTTGACTGCCACACA 61.180 57.895 0.00 0.00 0.00 3.72
551 557 1.436195 TTCACGCTTGACTGCCACAC 61.436 55.000 0.00 0.00 0.00 3.82
552 558 1.153269 TTCACGCTTGACTGCCACA 60.153 52.632 0.00 0.00 0.00 4.17
553 559 1.279840 GTTCACGCTTGACTGCCAC 59.720 57.895 0.00 0.00 0.00 5.01
819 834 1.656875 CCAATCTCTCGCTCGCTCG 60.657 63.158 0.00 0.00 0.00 5.03
820 835 1.299773 CCCAATCTCTCGCTCGCTC 60.300 63.158 0.00 0.00 0.00 5.03
821 836 1.733402 CTCCCAATCTCTCGCTCGCT 61.733 60.000 0.00 0.00 0.00 4.93
822 837 1.299773 CTCCCAATCTCTCGCTCGC 60.300 63.158 0.00 0.00 0.00 5.03
823 838 1.103987 TCCTCCCAATCTCTCGCTCG 61.104 60.000 0.00 0.00 0.00 5.03
862 877 2.754658 TCCTCGGCTCGACTTCCC 60.755 66.667 0.00 0.00 0.00 3.97
906 921 1.392510 GTCTAACACGGACGAAATGGC 59.607 52.381 0.00 0.00 0.00 4.40
918 933 2.005971 AGAAATCCGGCGTCTAACAC 57.994 50.000 6.01 0.00 0.00 3.32
940 955 6.867550 AGAGCGCAAATATACATCAGCTATA 58.132 36.000 11.47 0.00 33.51 1.31
966 993 0.896923 AGGTCTCTGCAGCTCAAGAG 59.103 55.000 9.47 13.80 0.00 2.85
995 1022 2.364842 ACGGCTCCTCCATGCTCT 60.365 61.111 0.00 0.00 34.01 4.09
1126 1158 5.135383 CAGCTTAAATCAGGATGGAATGGA 58.865 41.667 0.00 0.00 36.16 3.41
1127 1159 4.261909 GCAGCTTAAATCAGGATGGAATGG 60.262 45.833 0.00 0.00 36.16 3.16
1128 1160 4.556104 CGCAGCTTAAATCAGGATGGAATG 60.556 45.833 0.00 0.00 36.16 2.67
1129 1161 3.567164 CGCAGCTTAAATCAGGATGGAAT 59.433 43.478 0.00 0.00 36.16 3.01
1130 1162 2.945008 CGCAGCTTAAATCAGGATGGAA 59.055 45.455 0.00 0.00 36.16 3.53
1180 1215 7.255836 GGCAGGTTACTTTCTTTGTAAAGGAAT 60.256 37.037 4.67 0.00 41.75 3.01
1198 1233 2.124411 GAATAGGTGAGGGGCAGGTTA 58.876 52.381 0.00 0.00 0.00 2.85
1205 1240 1.696097 CGTGGGGAATAGGTGAGGGG 61.696 65.000 0.00 0.00 0.00 4.79
1208 1243 0.179073 CTGCGTGGGGAATAGGTGAG 60.179 60.000 0.00 0.00 0.00 3.51
1214 1253 1.404479 ATACGGCTGCGTGGGGAATA 61.404 55.000 0.00 0.00 0.00 1.75
1223 1262 2.047151 AAATCGGCAATACGGCTGCG 62.047 55.000 0.00 0.00 40.88 5.18
1224 1263 0.317020 GAAATCGGCAATACGGCTGC 60.317 55.000 0.00 0.00 40.04 5.25
1227 1274 4.893241 CGAAATCGGCAATACGGC 57.107 55.556 0.00 0.00 35.37 5.68
1256 1303 4.578105 GGAAAGAACAAGCATAGATCTGGG 59.422 45.833 5.18 0.00 0.00 4.45
1265 1312 1.428912 TCCCCAGGAAAGAACAAGCAT 59.571 47.619 0.00 0.00 0.00 3.79
1266 1313 0.850100 TCCCCAGGAAAGAACAAGCA 59.150 50.000 0.00 0.00 0.00 3.91
1269 1316 6.152638 AGATTAATCCCCAGGAAAGAACAA 57.847 37.500 11.92 0.00 34.34 2.83
1270 1317 5.796502 AGATTAATCCCCAGGAAAGAACA 57.203 39.130 11.92 0.00 34.34 3.18
1271 1318 6.187682 TCAAGATTAATCCCCAGGAAAGAAC 58.812 40.000 11.92 0.00 34.34 3.01
1272 1319 6.401537 TCAAGATTAATCCCCAGGAAAGAA 57.598 37.500 11.92 0.00 34.34 2.52
1276 1342 8.977412 GTAAATTTCAAGATTAATCCCCAGGAA 58.023 33.333 11.92 6.36 34.34 3.36
1284 1350 7.857885 CGGCAGGAGTAAATTTCAAGATTAATC 59.142 37.037 7.41 7.41 0.00 1.75
1291 1643 2.159379 GGCGGCAGGAGTAAATTTCAAG 60.159 50.000 3.07 0.00 0.00 3.02
1301 1653 2.676163 AAAGAAACGGCGGCAGGAGT 62.676 55.000 13.24 0.00 0.00 3.85
1328 1680 6.093909 TCGAACTGGTGTACGATTTGTATAGA 59.906 38.462 0.00 0.00 35.02 1.98
1329 1681 6.260377 TCGAACTGGTGTACGATTTGTATAG 58.740 40.000 0.00 0.00 35.02 1.31
1333 1685 3.374220 TCGAACTGGTGTACGATTTGT 57.626 42.857 0.00 0.00 0.00 2.83
1340 1694 4.243270 AGCTGTAAATCGAACTGGTGTAC 58.757 43.478 0.00 0.00 0.00 2.90
1348 1702 4.113354 AGATTCCGAGCTGTAAATCGAAC 58.887 43.478 0.00 0.00 41.40 3.95
1362 1718 0.981277 GGAACAGGGGGAGATTCCGA 60.981 60.000 0.00 0.00 37.43 4.55
1364 1720 0.840617 GAGGAACAGGGGGAGATTCC 59.159 60.000 0.00 0.00 40.87 3.01
1374 1730 0.539051 ATGAAGAGCCGAGGAACAGG 59.461 55.000 0.00 0.00 0.00 4.00
1385 1741 2.468831 CAGACGAGGCTAATGAAGAGC 58.531 52.381 0.00 0.00 39.33 4.09
1386 1742 2.468831 GCAGACGAGGCTAATGAAGAG 58.531 52.381 0.00 0.00 0.00 2.85
1392 1748 0.749649 CAGAGGCAGACGAGGCTAAT 59.250 55.000 0.00 0.00 45.32 1.73
1439 1815 4.694037 CACCCCTAACTAAAAAGAACCGAG 59.306 45.833 0.00 0.00 0.00 4.63
1450 1826 3.175594 ACGGATGAACACCCCTAACTAA 58.824 45.455 0.00 0.00 0.00 2.24
1451 1827 2.823959 ACGGATGAACACCCCTAACTA 58.176 47.619 0.00 0.00 0.00 2.24
1452 1828 1.652947 ACGGATGAACACCCCTAACT 58.347 50.000 0.00 0.00 0.00 2.24
1453 1829 2.484742 AACGGATGAACACCCCTAAC 57.515 50.000 0.00 0.00 0.00 2.34
1454 1830 3.414269 GAAAACGGATGAACACCCCTAA 58.586 45.455 0.00 0.00 0.00 2.69
1460 1836 1.136446 CGTCCGAAAACGGATGAACAC 60.136 52.381 21.36 5.65 45.25 3.32
1477 1853 1.231958 TGGAATGTTTCGGTGCCGTC 61.232 55.000 10.60 0.00 40.74 4.79
1540 1930 3.181484 TGGTTGTATATTCGTCTCCGTGG 60.181 47.826 0.00 0.00 35.01 4.94
1545 1935 4.395959 TGGGTGGTTGTATATTCGTCTC 57.604 45.455 0.00 0.00 0.00 3.36
1561 1958 4.025979 GCGATTTTCTTACTCGTATGGGTG 60.026 45.833 0.00 0.00 34.96 4.61
1565 1962 5.950965 ACTGCGATTTTCTTACTCGTATG 57.049 39.130 0.00 0.00 34.96 2.39
1651 2049 1.862201 CGCGAGGCCGTTGATTAATTA 59.138 47.619 0.00 0.00 38.24 1.40
1707 2105 6.374588 TGTGAGAAATTACCCCCAAACTAAA 58.625 36.000 0.00 0.00 0.00 1.85
1745 2147 2.045926 CTAAGCAAGCGGGGCACT 60.046 61.111 0.00 0.00 0.00 4.40
1746 2148 3.815396 GCTAAGCAAGCGGGGCAC 61.815 66.667 0.00 0.00 42.53 5.01
1759 2173 1.586154 GCGAAGGCAAGCAAGGCTAA 61.586 55.000 4.95 0.00 44.47 3.09
1774 2188 1.153568 CAGAGATCTTGCCGGCGAA 60.154 57.895 23.90 15.97 0.00 4.70
1791 2205 4.574271 ACAGCTGCCTGCACTGCA 62.574 61.111 15.27 3.11 45.94 4.41
1792 2206 3.735029 GACAGCTGCCTGCACTGC 61.735 66.667 15.27 8.04 45.94 4.40
1793 2207 2.281276 TGACAGCTGCCTGCACTG 60.281 61.111 15.27 15.42 45.94 3.66
1794 2208 2.032223 CTGACAGCTGCCTGCACT 59.968 61.111 15.27 0.00 45.94 4.40
1795 2209 3.735029 GCTGACAGCTGCCTGCAC 61.735 66.667 23.50 5.97 45.94 4.57
1838 2252 0.336737 ACCTCTACTGGGTAGCAGCT 59.663 55.000 0.00 0.00 36.22 4.24
1839 2253 0.747852 GACCTCTACTGGGTAGCAGC 59.252 60.000 0.00 0.00 37.17 5.25
1841 2255 0.330604 ACGACCTCTACTGGGTAGCA 59.669 55.000 0.00 0.00 37.17 3.49
1842 2256 0.739561 CACGACCTCTACTGGGTAGC 59.260 60.000 0.00 0.00 37.17 3.58
1854 2269 1.588824 TATTCGCACGACCACGACCT 61.589 55.000 0.00 0.00 42.66 3.85
1881 2296 3.269381 TGAAGGGGATATGGTTTCTTGCT 59.731 43.478 0.00 0.00 0.00 3.91
1899 2314 4.285292 CAACAGCAGCAAAGTTACTGAAG 58.715 43.478 9.44 4.07 35.90 3.02
1908 2323 0.746063 TCAACCCAACAGCAGCAAAG 59.254 50.000 0.00 0.00 0.00 2.77
1916 2331 2.035066 CCTCAAAAGCTCAACCCAACAG 59.965 50.000 0.00 0.00 0.00 3.16
1949 2528 7.707104 CCCAAGGCAGAATACTAGTAAAATTG 58.293 38.462 6.70 4.93 0.00 2.32
2027 2609 4.589908 AGAAATTACAGCCTCGTTGGATT 58.410 39.130 1.63 0.00 38.35 3.01
2029 2611 3.695830 AGAAATTACAGCCTCGTTGGA 57.304 42.857 1.63 0.00 38.35 3.53
2135 2717 9.039870 GGTGTTATCTATGAAGTCAGAGAATTG 57.960 37.037 9.53 0.00 45.82 2.32
2158 2740 3.242903 TGCGCCATAATAAACAATCGGTG 60.243 43.478 4.18 0.00 0.00 4.94
2159 2741 2.946329 TGCGCCATAATAAACAATCGGT 59.054 40.909 4.18 0.00 0.00 4.69
2198 2781 4.659874 GGTCACCAAACACGCGCG 62.660 66.667 30.96 30.96 0.00 6.86
2271 2856 5.872617 CGGTAATTTGGTCAGTGTCATTAGA 59.127 40.000 0.00 0.00 0.00 2.10
2272 2857 5.642063 ACGGTAATTTGGTCAGTGTCATTAG 59.358 40.000 0.00 0.00 0.00 1.73
2273 2858 5.553123 ACGGTAATTTGGTCAGTGTCATTA 58.447 37.500 0.00 0.00 0.00 1.90
2275 2860 4.015872 ACGGTAATTTGGTCAGTGTCAT 57.984 40.909 0.00 0.00 0.00 3.06
2276 2861 3.478857 ACGGTAATTTGGTCAGTGTCA 57.521 42.857 0.00 0.00 0.00 3.58
2277 2862 4.514066 AGAAACGGTAATTTGGTCAGTGTC 59.486 41.667 0.00 0.00 0.00 3.67
2278 2863 4.274950 CAGAAACGGTAATTTGGTCAGTGT 59.725 41.667 0.00 0.00 0.00 3.55
2279 2864 4.513692 TCAGAAACGGTAATTTGGTCAGTG 59.486 41.667 0.00 0.00 0.00 3.66
2311 2898 3.612860 CACGATAGCTTACTGGTCAACAC 59.387 47.826 0.00 0.00 42.67 3.32
2345 2935 4.760204 GGGTTACACACTAAGAGCAAACAT 59.240 41.667 0.00 0.00 0.00 2.71
2346 2936 4.131596 GGGTTACACACTAAGAGCAAACA 58.868 43.478 0.00 0.00 0.00 2.83
2382 2972 7.981102 AAGGATAGTGGAAACAGTTTAACTC 57.019 36.000 14.38 5.89 42.89 3.01
2383 2973 7.447545 GGAAAGGATAGTGGAAACAGTTTAACT 59.552 37.037 15.04 15.04 42.89 2.24
2390 2981 5.165961 TCTGGAAAGGATAGTGGAAACAG 57.834 43.478 0.00 0.00 44.46 3.16
2406 2997 4.774726 AGAATACACTCAGAAGCTCTGGAA 59.225 41.667 11.63 0.00 44.39 3.53
2422 3013 7.044181 CCTGCAAGATCTACAGAAAGAATACA 58.956 38.462 21.56 0.00 34.07 2.29
2423 3014 6.481644 CCCTGCAAGATCTACAGAAAGAATAC 59.518 42.308 21.56 0.00 34.07 1.89
2497 3097 0.964700 AGCAAAGCAAGAAAGGGCTC 59.035 50.000 0.00 0.00 40.01 4.70
2521 3121 2.938756 GCTGTATGCACTCTCCTTTGCT 60.939 50.000 0.00 0.00 42.31 3.91
2523 3123 2.983229 AGCTGTATGCACTCTCCTTTG 58.017 47.619 0.00 0.00 45.94 2.77
2524 3124 3.244700 ACAAGCTGTATGCACTCTCCTTT 60.245 43.478 0.00 0.00 45.94 3.11
2556 3158 5.550232 TTCTGACATTTCGAACATGGATG 57.450 39.130 18.26 12.81 0.00 3.51
2557 3159 6.573664 TTTTCTGACATTTCGAACATGGAT 57.426 33.333 18.26 0.53 0.00 3.41
2567 3169 7.128976 GTGAGAGTGAGTTTTTCTGACATTTC 58.871 38.462 0.00 0.00 32.78 2.17
2626 3236 1.340889 CCACAGAGATCAGCTAGAGGC 59.659 57.143 0.00 0.00 42.19 4.70
2628 3238 3.286353 TGACCACAGAGATCAGCTAGAG 58.714 50.000 0.00 0.00 0.00 2.43
2640 3250 8.684386 TTCTTGTTTATTTACATGACCACAGA 57.316 30.769 0.00 0.00 33.52 3.41
2641 3251 9.559958 GATTCTTGTTTATTTACATGACCACAG 57.440 33.333 0.00 0.00 33.52 3.66
2642 3252 9.072375 TGATTCTTGTTTATTTACATGACCACA 57.928 29.630 0.00 0.00 33.52 4.17
2676 3297 8.412456 CCACCTATTTGCATTAATATCAACACA 58.588 33.333 0.00 0.00 0.00 3.72
2687 3308 2.748132 CGCCCTCCACCTATTTGCATTA 60.748 50.000 0.00 0.00 0.00 1.90
2694 3315 3.861797 CCGCGCCCTCCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
2725 3346 9.801873 CGACCAAAAATGGTTCTTGATTAATAT 57.198 29.630 1.46 0.00 43.24 1.28
2732 3353 3.697045 ACACGACCAAAAATGGTTCTTGA 59.303 39.130 1.46 0.00 43.24 3.02
2817 3438 0.764890 CCAGTGGTGTTCAGAGGGAA 59.235 55.000 0.00 0.00 0.00 3.97
2828 3480 3.753272 CCAAGACAGAAATACCAGTGGTG 59.247 47.826 25.64 9.38 36.19 4.17
2829 3481 3.810743 GCCAAGACAGAAATACCAGTGGT 60.811 47.826 20.91 20.91 40.16 4.16
2839 3491 0.179032 TTGCCTCGCCAAGACAGAAA 60.179 50.000 0.00 0.00 0.00 2.52
2869 3522 3.678548 CGTTGTTACTGCTCCTCCTAAAC 59.321 47.826 0.00 0.00 0.00 2.01
2872 3525 1.203994 GCGTTGTTACTGCTCCTCCTA 59.796 52.381 0.00 0.00 0.00 2.94
2913 3566 1.137872 CTATTGCAGTCGCCCTCTTCT 59.862 52.381 0.00 0.00 37.32 2.85
2928 3581 6.212187 TGGACCATGGATATCTCAGTCTATTG 59.788 42.308 21.47 0.00 0.00 1.90
2929 3582 6.212388 GTGGACCATGGATATCTCAGTCTATT 59.788 42.308 21.47 0.00 0.00 1.73
2945 3598 0.452987 CGAAGCCAATGTGGACCATG 59.547 55.000 0.00 0.00 40.96 3.66
3050 3703 5.690865 TCATCAGACCGGCCTAATTAAATT 58.309 37.500 0.00 0.00 0.00 1.82
3233 3888 4.467795 TGGAGAGGATAGAAGTGGAAACAG 59.532 45.833 0.00 0.00 44.46 3.16
3269 3924 7.344612 TCCCAGCAAGATCTATTAACAGACTAA 59.655 37.037 0.00 0.00 0.00 2.24
3291 3946 8.792633 GCATACTGTATAATAAAGCAATTCCCA 58.207 33.333 0.00 0.00 0.00 4.37
3373 4029 5.279456 GCCATTTGGAACTTGGATGTACTTT 60.279 40.000 0.00 0.00 37.39 2.66
3482 4138 5.884322 ACTGATATACATGACCATTGGCAT 58.116 37.500 1.54 4.77 0.00 4.40
3537 4193 6.651643 AGTGAGTCAGTAGTCAGTACACTTAG 59.348 42.308 0.00 0.00 37.02 2.18
3541 4197 4.143073 CGAGTGAGTCAGTAGTCAGTACAC 60.143 50.000 0.00 0.00 38.58 2.90
3564 4220 8.391106 GGAACATACACATTGTTAAGTCAGATC 58.609 37.037 0.00 0.00 37.43 2.75
3720 4376 1.208776 TGAGCATCATCCTCTGTGGTG 59.791 52.381 0.00 0.00 42.56 4.17
4030 4686 5.720202 TGTATGCAGTTACGAGAGAAACAT 58.280 37.500 0.00 0.00 0.00 2.71
4040 4697 3.742882 CCTCCATCATGTATGCAGTTACG 59.257 47.826 0.00 0.00 33.92 3.18
4058 4715 1.772836 ATGCTTGATTTCAGGCCTCC 58.227 50.000 0.00 0.00 46.80 4.30
4093 4750 5.527951 TGCACAGGTCAATTTAAGTTAACGA 59.472 36.000 0.00 0.00 0.00 3.85
4095 4752 7.651704 ACAATGCACAGGTCAATTTAAGTTAAC 59.348 33.333 0.00 0.00 0.00 2.01
4104 4761 5.048504 CACTAGAACAATGCACAGGTCAATT 60.049 40.000 7.88 0.00 0.00 2.32
4105 4762 4.456911 CACTAGAACAATGCACAGGTCAAT 59.543 41.667 7.88 0.00 0.00 2.57
4106 4763 3.814842 CACTAGAACAATGCACAGGTCAA 59.185 43.478 7.88 0.00 0.00 3.18
4580 5251 1.978097 CACGATGCAAACCATGAAACG 59.022 47.619 0.00 0.00 33.29 3.60
4581 5252 3.011949 ACACGATGCAAACCATGAAAC 57.988 42.857 0.00 0.00 33.29 2.78
4582 5253 3.190327 CCTACACGATGCAAACCATGAAA 59.810 43.478 0.00 0.00 33.29 2.69
4583 5254 2.746904 CCTACACGATGCAAACCATGAA 59.253 45.455 0.00 0.00 33.29 2.57
4584 5255 2.355197 CCTACACGATGCAAACCATGA 58.645 47.619 0.00 0.00 33.29 3.07
4585 5256 1.202177 GCCTACACGATGCAAACCATG 60.202 52.381 0.00 0.00 33.29 3.66
4586 5257 1.094785 GCCTACACGATGCAAACCAT 58.905 50.000 0.00 0.00 36.70 3.55
4587 5258 1.295357 CGCCTACACGATGCAAACCA 61.295 55.000 0.00 0.00 34.06 3.67
4588 5259 1.017177 TCGCCTACACGATGCAAACC 61.017 55.000 0.00 0.00 37.09 3.27
4589 5260 0.793861 TTCGCCTACACGATGCAAAC 59.206 50.000 0.00 0.00 42.54 2.93
4590 5261 1.075542 CTTCGCCTACACGATGCAAA 58.924 50.000 0.00 0.00 42.54 3.68
4591 5262 0.739462 CCTTCGCCTACACGATGCAA 60.739 55.000 0.00 0.00 42.54 4.08
4592 5263 1.153647 CCTTCGCCTACACGATGCA 60.154 57.895 0.00 0.00 42.54 3.96
4593 5264 1.883084 CCCTTCGCCTACACGATGC 60.883 63.158 0.00 0.00 42.54 3.91
4594 5265 0.806102 CACCCTTCGCCTACACGATG 60.806 60.000 0.00 0.00 42.54 3.84
4595 5266 1.515954 CACCCTTCGCCTACACGAT 59.484 57.895 0.00 0.00 42.54 3.73
4596 5267 2.967397 CACCCTTCGCCTACACGA 59.033 61.111 0.00 0.00 41.04 4.35
4637 5308 5.065218 CCATACATCTGCAACAAACCTAGAC 59.935 44.000 0.00 0.00 0.00 2.59
4754 5426 0.681887 CAGATGCCATGGCCACTTCA 60.682 55.000 33.44 14.74 41.09 3.02
4760 5432 1.350351 AGTAGATCAGATGCCATGGCC 59.650 52.381 33.44 19.25 41.09 5.36
4767 5439 8.138074 TGTTTATGACACTAGTAGATCAGATGC 58.862 37.037 3.59 2.41 32.00 3.91
4800 5485 2.487428 CTCCACACTCTCGCTCCG 59.513 66.667 0.00 0.00 0.00 4.63
4801 5486 2.183046 GCTCCACACTCTCGCTCC 59.817 66.667 0.00 0.00 0.00 4.70
4804 5489 3.691744 CTCCGCTCCACACTCTCGC 62.692 68.421 0.00 0.00 0.00 5.03
4805 5490 2.487428 CTCCGCTCCACACTCTCG 59.513 66.667 0.00 0.00 0.00 4.04
4806 5491 1.662438 CTCCTCCGCTCCACACTCTC 61.662 65.000 0.00 0.00 0.00 3.20
4807 5492 1.680651 CTCCTCCGCTCCACACTCT 60.681 63.158 0.00 0.00 0.00 3.24
4808 5493 2.716017 CCTCCTCCGCTCCACACTC 61.716 68.421 0.00 0.00 0.00 3.51
4809 5494 2.681778 CCTCCTCCGCTCCACACT 60.682 66.667 0.00 0.00 0.00 3.55
4819 5504 3.787001 CCTGTTCGGCCCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
4828 5513 1.269621 CGATACTAAGGGCCTGTTCGG 60.270 57.143 6.92 0.00 0.00 4.30
4829 5514 1.269621 CCGATACTAAGGGCCTGTTCG 60.270 57.143 6.92 12.96 0.00 3.95
4830 5515 1.540580 GCCGATACTAAGGGCCTGTTC 60.541 57.143 6.92 1.84 41.01 3.18
4832 5517 2.134092 GCCGATACTAAGGGCCTGT 58.866 57.895 6.92 3.82 41.01 4.00
4837 5522 2.169769 TCCAACAAGCCGATACTAAGGG 59.830 50.000 0.00 0.00 0.00 3.95
4892 5834 7.568861 CGTTTCGCTGTTCTTACTACATTTCTT 60.569 37.037 0.00 0.00 0.00 2.52
4917 5859 1.006805 TGAAATTTGCGCAACCCCG 60.007 52.632 24.99 0.00 0.00 5.73
4956 5898 2.235650 GTCCCCTGTCTGTAACTTACCC 59.764 54.545 0.00 0.00 0.00 3.69
4990 5932 2.260844 TGAGGAACTGTGCCTTCTTG 57.739 50.000 9.19 0.00 41.55 3.02
5124 6074 2.093106 TCTCTAGAAAGGAGTCCGTGC 58.907 52.381 2.76 0.00 33.06 5.34
5244 6197 1.376037 GCTGCAGGCGAAGTAGGTT 60.376 57.895 17.12 0.00 0.00 3.50
5284 6237 0.597637 CGCCATCCACCGTATCTGTC 60.598 60.000 0.00 0.00 0.00 3.51
5320 6273 4.246458 GAGTGGACTCGTTTAGCAATCTT 58.754 43.478 0.00 0.00 32.78 2.40
5375 6328 2.434336 TCTTAAGCGATACACATGCCCT 59.566 45.455 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.