Multiple sequence alignment - TraesCS6B01G387100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G387100 chr6B 100.000 2690 0 0 1 2690 661864159 661861470 0.000000e+00 4968
1 TraesCS6B01G387100 chr1D 91.812 1783 104 20 938 2690 461787807 461786037 0.000000e+00 2446
2 TraesCS6B01G387100 chr1D 89.816 1139 74 12 957 2080 461823046 461821935 0.000000e+00 1423
3 TraesCS6B01G387100 chr1D 81.221 655 77 27 1814 2462 461751790 461751176 1.120000e-133 486
4 TraesCS6B01G387100 chr1B 91.324 1775 124 11 924 2674 634785137 634783369 0.000000e+00 2398
5 TraesCS6B01G387100 chr1B 90.930 1764 127 14 938 2674 635000611 634998854 0.000000e+00 2340
6 TraesCS6B01G387100 chr1B 91.445 1578 97 14 975 2524 635140352 635138785 0.000000e+00 2132
7 TraesCS6B01G387100 chr1B 90.018 1142 79 8 957 2081 634866431 634865308 0.000000e+00 1445
8 TraesCS6B01G387100 chr1B 89.930 1142 80 8 957 2081 634934985 634933862 0.000000e+00 1439
9 TraesCS6B01G387100 chr1B 90.212 613 53 3 1 613 13048582 13047977 0.000000e+00 793
10 TraesCS6B01G387100 chr1B 89.577 614 56 4 1 612 592162972 592163579 0.000000e+00 773
11 TraesCS6B01G387100 chr1B 84.401 359 50 3 1814 2171 635087902 635087549 5.510000e-92 348
12 TraesCS6B01G387100 chr1B 94.578 166 8 1 2525 2690 635127373 635127209 3.440000e-64 255
13 TraesCS6B01G387100 chrUn 89.748 1073 75 8 957 2012 350030196 350031250 0.000000e+00 1339
14 TraesCS6B01G387100 chrUn 89.853 611 56 2 1 611 37861108 37861712 0.000000e+00 780
15 TraesCS6B01G387100 chr1A 88.693 796 62 12 975 1760 553465954 553465177 0.000000e+00 946
16 TraesCS6B01G387100 chr1A 92.683 328 24 0 1753 2080 553464877 553464550 8.720000e-130 473
17 TraesCS6B01G387100 chr1A 93.891 311 18 1 1639 1949 553068397 553068088 4.060000e-128 468
18 TraesCS6B01G387100 chr1A 79.848 660 83 22 1814 2462 553046336 553045716 1.140000e-118 436
19 TraesCS6B01G387100 chr7B 91.340 612 47 2 1 612 593627200 593627805 0.000000e+00 832
20 TraesCS6B01G387100 chr3B 90.033 612 54 3 1 612 44093825 44093221 0.000000e+00 785
21 TraesCS6B01G387100 chr7D 89.886 613 53 3 1 613 630031089 630031692 0.000000e+00 780
22 TraesCS6B01G387100 chr2D 89.869 612 55 3 1 612 625028227 625027623 0.000000e+00 780
23 TraesCS6B01G387100 chr5B 89.577 614 54 8 1 613 588152173 588152777 0.000000e+00 771
24 TraesCS6B01G387100 chr5D 88.995 627 55 8 1 624 558252472 558251857 0.000000e+00 763


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G387100 chr6B 661861470 661864159 2689 True 4968.0 4968 100.000 1 2690 1 chr6B.!!$R1 2689
1 TraesCS6B01G387100 chr1D 461786037 461787807 1770 True 2446.0 2446 91.812 938 2690 1 chr1D.!!$R2 1752
2 TraesCS6B01G387100 chr1D 461821935 461823046 1111 True 1423.0 1423 89.816 957 2080 1 chr1D.!!$R3 1123
3 TraesCS6B01G387100 chr1D 461751176 461751790 614 True 486.0 486 81.221 1814 2462 1 chr1D.!!$R1 648
4 TraesCS6B01G387100 chr1B 634783369 634785137 1768 True 2398.0 2398 91.324 924 2674 1 chr1B.!!$R2 1750
5 TraesCS6B01G387100 chr1B 634998854 635000611 1757 True 2340.0 2340 90.930 938 2674 1 chr1B.!!$R5 1736
6 TraesCS6B01G387100 chr1B 635138785 635140352 1567 True 2132.0 2132 91.445 975 2524 1 chr1B.!!$R8 1549
7 TraesCS6B01G387100 chr1B 634865308 634866431 1123 True 1445.0 1445 90.018 957 2081 1 chr1B.!!$R3 1124
8 TraesCS6B01G387100 chr1B 634933862 634934985 1123 True 1439.0 1439 89.930 957 2081 1 chr1B.!!$R4 1124
9 TraesCS6B01G387100 chr1B 13047977 13048582 605 True 793.0 793 90.212 1 613 1 chr1B.!!$R1 612
10 TraesCS6B01G387100 chr1B 592162972 592163579 607 False 773.0 773 89.577 1 612 1 chr1B.!!$F1 611
11 TraesCS6B01G387100 chrUn 350030196 350031250 1054 False 1339.0 1339 89.748 957 2012 1 chrUn.!!$F2 1055
12 TraesCS6B01G387100 chrUn 37861108 37861712 604 False 780.0 780 89.853 1 611 1 chrUn.!!$F1 610
13 TraesCS6B01G387100 chr1A 553464550 553465954 1404 True 709.5 946 90.688 975 2080 2 chr1A.!!$R3 1105
14 TraesCS6B01G387100 chr1A 553045716 553046336 620 True 436.0 436 79.848 1814 2462 1 chr1A.!!$R1 648
15 TraesCS6B01G387100 chr7B 593627200 593627805 605 False 832.0 832 91.340 1 612 1 chr7B.!!$F1 611
16 TraesCS6B01G387100 chr3B 44093221 44093825 604 True 785.0 785 90.033 1 612 1 chr3B.!!$R1 611
17 TraesCS6B01G387100 chr7D 630031089 630031692 603 False 780.0 780 89.886 1 613 1 chr7D.!!$F1 612
18 TraesCS6B01G387100 chr2D 625027623 625028227 604 True 780.0 780 89.869 1 612 1 chr2D.!!$R1 611
19 TraesCS6B01G387100 chr5B 588152173 588152777 604 False 771.0 771 89.577 1 613 1 chr5B.!!$F1 612
20 TraesCS6B01G387100 chr5D 558251857 558252472 615 True 763.0 763 88.995 1 624 1 chr5D.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 347 0.034477 CCCGGTTAATGGCTGGAACT 60.034 55.0 0.0 0.0 34.35 3.01 F
744 752 0.038526 CGGACGAAACTAGCACCAGT 60.039 55.0 0.0 0.0 0.00 4.00 F
1374 1386 0.667487 CTGCCATCACTCGTTCGTGT 60.667 55.0 0.0 0.0 36.33 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1289 1.272490 CTAGGAGGTTCACTGAACGCA 59.728 52.381 14.43 0.0 42.78 5.24 R
1635 1667 1.342496 TGCGGATGCCATGAAAAACAA 59.658 42.857 0.00 0.0 41.78 2.83 R
2555 2932 2.867624 TGGATCAGGATGCTTATTGGC 58.132 47.619 2.49 0.0 34.76 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.080093 GGTGTTGGCGACGAGATCA 60.080 57.895 0.00 0.00 0.00 2.92
89 90 1.037493 CGACGGTGAAGATGGGGATA 58.963 55.000 0.00 0.00 0.00 2.59
115 116 0.101939 GACGGACCGCTAAACCTAGG 59.898 60.000 15.39 7.41 0.00 3.02
126 128 5.049405 CCGCTAAACCTAGGCAAATATTGAG 60.049 44.000 9.30 0.00 0.00 3.02
185 187 1.000145 GCTTAAGTAGTGTGGCTCGC 59.000 55.000 4.02 0.00 0.00 5.03
201 203 1.004610 CTCGCGCATTTCATCGAACAT 60.005 47.619 8.75 0.00 0.00 2.71
254 259 0.977395 AAAGCTCTCCAACGGCTAGT 59.023 50.000 0.00 0.00 35.06 2.57
286 292 1.670015 CAGTGGAGTGCTCTGCTCA 59.330 57.895 8.78 0.00 34.83 4.26
295 302 4.504916 CTCTGCTCACGGGCGAGG 62.505 72.222 0.00 0.00 33.36 4.63
340 347 0.034477 CCCGGTTAATGGCTGGAACT 60.034 55.000 0.00 0.00 34.35 3.01
357 364 2.417719 ACTGGGACTAAAGACCACCT 57.582 50.000 1.07 0.00 0.00 4.00
419 427 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
420 428 2.443394 CCAGGAGCGAGGCCCATTA 61.443 63.158 0.00 0.00 0.00 1.90
421 429 1.757306 CAGGAGCGAGGCCCATTAT 59.243 57.895 0.00 0.00 0.00 1.28
574 582 1.281867 CTGAACTGGGACTAATGGGCA 59.718 52.381 0.00 0.00 0.00 5.36
603 611 1.066454 CCGAACGAAAGCCCTGTTTTT 59.934 47.619 0.00 0.00 0.00 1.94
625 633 8.615878 TTTTTACTAGTGTGTGCATAGTGAAT 57.384 30.769 5.39 0.00 32.25 2.57
626 634 7.827819 TTTACTAGTGTGTGCATAGTGAATC 57.172 36.000 5.39 0.00 32.25 2.52
627 635 4.424626 ACTAGTGTGTGCATAGTGAATCG 58.575 43.478 0.00 0.00 0.00 3.34
628 636 2.621338 AGTGTGTGCATAGTGAATCGG 58.379 47.619 0.00 0.00 0.00 4.18
629 637 1.665679 GTGTGTGCATAGTGAATCGGG 59.334 52.381 0.00 0.00 0.00 5.14
630 638 1.299541 GTGTGCATAGTGAATCGGGG 58.700 55.000 0.00 0.00 0.00 5.73
631 639 0.180171 TGTGCATAGTGAATCGGGGG 59.820 55.000 0.00 0.00 0.00 5.40
632 640 0.468226 GTGCATAGTGAATCGGGGGA 59.532 55.000 0.00 0.00 0.00 4.81
633 641 0.468226 TGCATAGTGAATCGGGGGAC 59.532 55.000 0.00 0.00 0.00 4.46
634 642 0.600255 GCATAGTGAATCGGGGGACG 60.600 60.000 0.00 0.00 46.11 4.79
644 652 2.848784 GGGGGACGAGGGGTTTTT 59.151 61.111 0.00 0.00 0.00 1.94
661 669 1.611519 TTTTCCCCTACTGCGTTTGG 58.388 50.000 0.00 0.00 0.00 3.28
662 670 0.250989 TTTCCCCTACTGCGTTTGGG 60.251 55.000 10.28 10.28 39.37 4.12
663 671 1.128809 TTCCCCTACTGCGTTTGGGA 61.129 55.000 15.44 13.39 43.47 4.37
664 672 1.128809 TCCCCTACTGCGTTTGGGAA 61.129 55.000 15.44 0.17 42.24 3.97
665 673 0.958876 CCCCTACTGCGTTTGGGAAC 60.959 60.000 15.44 0.00 42.11 3.62
674 682 3.865700 GTTTGGGAACGAAGCAAGG 57.134 52.632 0.00 0.00 33.30 3.61
675 683 1.314730 GTTTGGGAACGAAGCAAGGA 58.685 50.000 0.00 0.00 33.30 3.36
676 684 1.679153 GTTTGGGAACGAAGCAAGGAA 59.321 47.619 0.00 0.00 33.30 3.36
677 685 1.604604 TTGGGAACGAAGCAAGGAAG 58.395 50.000 0.00 0.00 0.00 3.46
678 686 0.762418 TGGGAACGAAGCAAGGAAGA 59.238 50.000 0.00 0.00 0.00 2.87
679 687 1.142060 TGGGAACGAAGCAAGGAAGAA 59.858 47.619 0.00 0.00 0.00 2.52
680 688 1.807142 GGGAACGAAGCAAGGAAGAAG 59.193 52.381 0.00 0.00 0.00 2.85
681 689 2.550208 GGGAACGAAGCAAGGAAGAAGA 60.550 50.000 0.00 0.00 0.00 2.87
682 690 3.339141 GGAACGAAGCAAGGAAGAAGAT 58.661 45.455 0.00 0.00 0.00 2.40
683 691 3.753797 GGAACGAAGCAAGGAAGAAGATT 59.246 43.478 0.00 0.00 0.00 2.40
684 692 4.216472 GGAACGAAGCAAGGAAGAAGATTT 59.784 41.667 0.00 0.00 0.00 2.17
685 693 4.756084 ACGAAGCAAGGAAGAAGATTTG 57.244 40.909 0.00 0.00 0.00 2.32
686 694 4.389374 ACGAAGCAAGGAAGAAGATTTGA 58.611 39.130 0.00 0.00 0.00 2.69
687 695 4.214332 ACGAAGCAAGGAAGAAGATTTGAC 59.786 41.667 0.00 0.00 0.00 3.18
688 696 4.667668 CGAAGCAAGGAAGAAGATTTGACG 60.668 45.833 0.00 0.00 0.00 4.35
689 697 3.077359 AGCAAGGAAGAAGATTTGACGG 58.923 45.455 0.00 0.00 0.00 4.79
690 698 2.414691 GCAAGGAAGAAGATTTGACGGC 60.415 50.000 0.00 0.00 0.00 5.68
691 699 2.115343 AGGAAGAAGATTTGACGGCC 57.885 50.000 0.00 0.00 0.00 6.13
692 700 1.351017 AGGAAGAAGATTTGACGGCCA 59.649 47.619 2.24 0.00 0.00 5.36
693 701 2.025887 AGGAAGAAGATTTGACGGCCAT 60.026 45.455 2.24 0.00 0.00 4.40
694 702 2.755103 GGAAGAAGATTTGACGGCCATT 59.245 45.455 2.24 0.00 0.00 3.16
695 703 3.193479 GGAAGAAGATTTGACGGCCATTT 59.807 43.478 2.24 0.00 0.00 2.32
696 704 4.321974 GGAAGAAGATTTGACGGCCATTTT 60.322 41.667 2.24 0.00 0.00 1.82
697 705 4.871933 AGAAGATTTGACGGCCATTTTT 57.128 36.364 2.24 0.00 0.00 1.94
722 730 4.919677 TGTATTGTACAACTGTGATGCG 57.080 40.909 11.22 0.00 35.38 4.73
723 731 4.561105 TGTATTGTACAACTGTGATGCGA 58.439 39.130 11.22 0.00 35.38 5.10
724 732 4.387559 TGTATTGTACAACTGTGATGCGAC 59.612 41.667 11.22 0.00 35.38 5.19
725 733 1.790755 TGTACAACTGTGATGCGACC 58.209 50.000 0.00 0.00 0.00 4.79
726 734 0.713883 GTACAACTGTGATGCGACCG 59.286 55.000 0.00 0.00 0.00 4.79
727 735 0.389296 TACAACTGTGATGCGACCGG 60.389 55.000 0.00 0.00 0.00 5.28
728 736 1.374125 CAACTGTGATGCGACCGGA 60.374 57.895 9.46 0.00 0.00 5.14
729 737 1.374252 AACTGTGATGCGACCGGAC 60.374 57.895 9.46 0.00 0.00 4.79
730 738 2.880879 CTGTGATGCGACCGGACG 60.881 66.667 22.02 22.02 0.00 4.79
731 739 3.336715 CTGTGATGCGACCGGACGA 62.337 63.158 29.83 14.83 35.09 4.20
732 740 2.126228 GTGATGCGACCGGACGAA 60.126 61.111 29.83 20.96 35.09 3.85
733 741 1.735198 GTGATGCGACCGGACGAAA 60.735 57.895 29.83 16.76 35.09 3.46
734 742 1.735198 TGATGCGACCGGACGAAAC 60.735 57.895 29.83 18.76 35.09 2.78
735 743 1.445582 GATGCGACCGGACGAAACT 60.446 57.895 29.83 5.15 35.09 2.66
736 744 0.179156 GATGCGACCGGACGAAACTA 60.179 55.000 29.83 9.89 35.09 2.24
737 745 0.179145 ATGCGACCGGACGAAACTAG 60.179 55.000 29.83 0.00 35.09 2.57
738 746 2.157073 GCGACCGGACGAAACTAGC 61.157 63.158 29.83 6.23 35.09 3.42
739 747 1.210931 CGACCGGACGAAACTAGCA 59.789 57.895 21.84 0.00 35.09 3.49
740 748 1.069378 CGACCGGACGAAACTAGCAC 61.069 60.000 21.84 0.00 35.09 4.40
741 749 0.735287 GACCGGACGAAACTAGCACC 60.735 60.000 9.46 0.00 0.00 5.01
742 750 1.290955 CCGGACGAAACTAGCACCA 59.709 57.895 0.00 0.00 0.00 4.17
743 751 0.736325 CCGGACGAAACTAGCACCAG 60.736 60.000 0.00 0.00 0.00 4.00
744 752 0.038526 CGGACGAAACTAGCACCAGT 60.039 55.000 0.00 0.00 0.00 4.00
745 753 1.711206 GGACGAAACTAGCACCAGTC 58.289 55.000 0.00 0.00 0.00 3.51
746 754 1.000506 GGACGAAACTAGCACCAGTCA 59.999 52.381 0.00 0.00 0.00 3.41
747 755 2.329379 GACGAAACTAGCACCAGTCAG 58.671 52.381 0.00 0.00 0.00 3.51
748 756 1.071605 CGAAACTAGCACCAGTCAGC 58.928 55.000 0.00 0.00 0.00 4.26
749 757 1.337260 CGAAACTAGCACCAGTCAGCT 60.337 52.381 0.00 0.00 44.55 4.24
750 758 2.072298 GAAACTAGCACCAGTCAGCTG 58.928 52.381 7.63 7.63 41.97 4.24
758 766 2.202851 CAGTCAGCTGGCGCCTAG 60.203 66.667 29.70 22.98 39.01 3.02
759 767 2.681778 AGTCAGCTGGCGCCTAGT 60.682 61.111 29.70 8.76 36.60 2.57
760 768 1.379977 AGTCAGCTGGCGCCTAGTA 60.380 57.895 29.70 5.90 36.60 1.82
761 769 1.066587 GTCAGCTGGCGCCTAGTAG 59.933 63.158 29.70 17.88 36.60 2.57
762 770 2.279784 CAGCTGGCGCCTAGTAGC 60.280 66.667 29.70 26.93 36.60 3.58
770 778 4.629779 GCCTAGTAGCGGCCAAAA 57.370 55.556 2.24 0.00 41.73 2.44
771 779 2.862738 GCCTAGTAGCGGCCAAAAA 58.137 52.632 2.24 0.00 41.73 1.94
806 814 9.793259 TTCAGAAATCTATTAATATGTGGGACC 57.207 33.333 0.00 0.00 0.00 4.46
807 815 9.170890 TCAGAAATCTATTAATATGTGGGACCT 57.829 33.333 0.00 0.00 0.00 3.85
819 827 4.401657 GGACCTATCCACCCAGCT 57.598 61.111 0.00 0.00 45.47 4.24
820 828 2.621486 GGACCTATCCACCCAGCTT 58.379 57.895 0.00 0.00 45.47 3.74
821 829 0.919710 GGACCTATCCACCCAGCTTT 59.080 55.000 0.00 0.00 45.47 3.51
822 830 1.285078 GGACCTATCCACCCAGCTTTT 59.715 52.381 0.00 0.00 45.47 2.27
823 831 2.508300 GGACCTATCCACCCAGCTTTTA 59.492 50.000 0.00 0.00 45.47 1.52
824 832 3.053917 GGACCTATCCACCCAGCTTTTAA 60.054 47.826 0.00 0.00 45.47 1.52
825 833 4.386424 GGACCTATCCACCCAGCTTTTAAT 60.386 45.833 0.00 0.00 45.47 1.40
826 834 5.163131 GGACCTATCCACCCAGCTTTTAATA 60.163 44.000 0.00 0.00 45.47 0.98
827 835 6.467339 GGACCTATCCACCCAGCTTTTAATAT 60.467 42.308 0.00 0.00 45.47 1.28
828 836 6.306987 ACCTATCCACCCAGCTTTTAATATG 58.693 40.000 0.00 0.00 0.00 1.78
829 837 6.126185 ACCTATCCACCCAGCTTTTAATATGT 60.126 38.462 0.00 0.00 0.00 2.29
830 838 7.073215 ACCTATCCACCCAGCTTTTAATATGTA 59.927 37.037 0.00 0.00 0.00 2.29
831 839 7.390718 CCTATCCACCCAGCTTTTAATATGTAC 59.609 40.741 0.00 0.00 0.00 2.90
832 840 5.442391 TCCACCCAGCTTTTAATATGTACC 58.558 41.667 0.00 0.00 0.00 3.34
833 841 5.044772 TCCACCCAGCTTTTAATATGTACCA 60.045 40.000 0.00 0.00 0.00 3.25
834 842 5.654650 CCACCCAGCTTTTAATATGTACCAA 59.345 40.000 0.00 0.00 0.00 3.67
835 843 6.405397 CCACCCAGCTTTTAATATGTACCAAC 60.405 42.308 0.00 0.00 0.00 3.77
836 844 6.151985 CACCCAGCTTTTAATATGTACCAACA 59.848 38.462 0.00 0.00 40.69 3.33
838 846 7.398904 ACCCAGCTTTTAATATGTACCAACATT 59.601 33.333 0.00 0.00 44.07 2.71
839 847 8.908903 CCCAGCTTTTAATATGTACCAACATTA 58.091 33.333 0.00 0.00 44.07 1.90
840 848 9.950680 CCAGCTTTTAATATGTACCAACATTAG 57.049 33.333 0.00 0.00 44.07 1.73
852 860 9.905713 ATGTACCAACATTAGATGTGTCTAAAT 57.094 29.630 2.39 0.00 46.84 1.40
853 861 9.733556 TGTACCAACATTAGATGTGTCTAAATT 57.266 29.630 2.39 0.00 46.84 1.82
917 925 7.771183 TGGAACCTACTAAATGAATCAAATGC 58.229 34.615 0.00 0.00 0.00 3.56
918 926 7.395772 TGGAACCTACTAAATGAATCAAATGCA 59.604 33.333 0.00 0.00 0.00 3.96
919 927 8.250332 GGAACCTACTAAATGAATCAAATGCAA 58.750 33.333 0.00 0.00 0.00 4.08
920 928 9.294030 GAACCTACTAAATGAATCAAATGCAAG 57.706 33.333 0.00 0.00 0.00 4.01
921 929 7.775120 ACCTACTAAATGAATCAAATGCAAGG 58.225 34.615 0.00 0.00 0.00 3.61
922 930 7.615365 ACCTACTAAATGAATCAAATGCAAGGA 59.385 33.333 0.00 0.00 0.00 3.36
952 960 5.607119 TTTCCTTAAGATGAAGTGAACGC 57.393 39.130 3.36 0.00 0.00 4.84
954 962 4.245660 TCCTTAAGATGAAGTGAACGCTG 58.754 43.478 3.36 0.00 0.00 5.18
955 963 4.021456 TCCTTAAGATGAAGTGAACGCTGA 60.021 41.667 3.36 0.00 0.00 4.26
966 974 1.066215 TGAACGCTGACCATAGCACAT 60.066 47.619 0.00 0.00 43.87 3.21
968 976 2.979814 ACGCTGACCATAGCACATTA 57.020 45.000 0.00 0.00 43.87 1.90
969 977 2.826428 ACGCTGACCATAGCACATTAG 58.174 47.619 0.00 0.00 43.87 1.73
996 1008 1.032794 TAGAGCCTAGGTGATGCACG 58.967 55.000 11.31 0.00 34.83 5.34
1065 1077 3.551454 GCGTAAGTATTGGTCCGCATCTA 60.551 47.826 0.00 0.00 40.72 1.98
1086 1098 7.750229 TCTATCAAAGTTGATTGATATGGCC 57.250 36.000 11.58 0.00 46.02 5.36
1182 1194 2.656002 AGTAAGTCTCGAGCTGCCATA 58.344 47.619 7.81 0.00 0.00 2.74
1194 1206 3.629087 AGCTGCCATAGAAAAAGATGCT 58.371 40.909 0.00 0.00 0.00 3.79
1277 1289 1.386533 GCATGCTGCCAAGTAGTGAT 58.613 50.000 11.37 0.00 37.42 3.06
1296 1308 1.334160 TGCGTTCAGTGAACCTCCTA 58.666 50.000 26.37 8.80 39.14 2.94
1330 1342 1.400142 CATTTACCGCCGCAGATTTGA 59.600 47.619 0.00 0.00 0.00 2.69
1339 1351 2.208431 CCGCAGATTTGACTCAGATCC 58.792 52.381 6.04 0.00 0.00 3.36
1374 1386 0.667487 CTGCCATCACTCGTTCGTGT 60.667 55.000 0.00 0.00 36.33 4.49
1497 1528 7.429636 TGTCACATAGCTTTGTTTACTTACC 57.570 36.000 7.11 0.00 0.00 2.85
1570 1601 6.183360 TGCAGGTTACATTGTTCACTTTTGAT 60.183 34.615 0.00 0.00 0.00 2.57
1579 1610 1.035923 TCACTTTTGATTTGGGCGCA 58.964 45.000 10.83 0.00 0.00 6.09
1658 1690 3.115554 GTTTTTCATGGCATCCGCATAC 58.884 45.455 0.00 0.00 41.24 2.39
1697 1730 9.684448 TTTTGATGCAACTAATAAAATCGAACA 57.316 25.926 0.00 0.00 0.00 3.18
1907 2256 2.053627 CGTGGAATGAAAAGCTTGTGC 58.946 47.619 0.00 0.00 40.05 4.57
1945 2294 5.495926 ACCAGAGATCTTGTGTCATCTTT 57.504 39.130 0.00 0.00 29.01 2.52
1972 2322 7.613411 AGTTTTGAGAGGGATTTTAATCTCTGG 59.387 37.037 9.51 0.00 46.01 3.86
2048 2398 1.078426 GCACCGTGATTGCCTACCT 60.078 57.895 1.65 0.00 33.58 3.08
2058 2408 2.940994 TTGCCTACCTAGTTTGCACA 57.059 45.000 0.00 0.00 0.00 4.57
2084 2434 5.468072 CACTGGTTGATACCTTCATATGAGC 59.532 44.000 5.39 0.00 45.27 4.26
2111 2461 6.725834 AGGTGTTGAATATGGGTCAGATTTTT 59.274 34.615 0.00 0.00 0.00 1.94
2158 2508 5.528690 TCTGAAAGTTTGATGTTCTGGTCTG 59.471 40.000 0.00 0.00 33.76 3.51
2355 2713 3.509575 TGGGATTACCTGCATTTTCACAC 59.490 43.478 0.00 0.00 41.11 3.82
2440 2803 1.005630 CGGATGAATCGCTCTCCCC 60.006 63.158 0.00 0.00 0.00 4.81
2476 2853 3.047796 CAGCAATGCAAGTTGTGAAGTC 58.952 45.455 8.35 0.00 0.00 3.01
2555 2932 4.743151 TGCACAGTTAAGACTACAAGTTCG 59.257 41.667 0.00 0.00 33.90 3.95
2559 2936 4.748102 CAGTTAAGACTACAAGTTCGCCAA 59.252 41.667 0.00 0.00 33.90 4.52
2563 2940 7.331193 AGTTAAGACTACAAGTTCGCCAATAAG 59.669 37.037 0.00 0.00 33.32 1.73
2674 3051 7.414222 AAATTCATGATTAGCCTGTTCATGT 57.586 32.000 14.56 0.00 44.47 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.092291 GCGTTGATCTCGTCGCCAA 61.092 57.895 11.15 0.00 42.33 4.52
89 90 3.907260 TAGCGGTCCGTCACGTCCT 62.907 63.158 13.94 1.74 0.00 3.85
115 116 5.052481 GCTCCATTTTCCCTCAATATTTGC 58.948 41.667 0.00 0.00 0.00 3.68
126 128 1.272704 ACCTCCAAGCTCCATTTTCCC 60.273 52.381 0.00 0.00 0.00 3.97
201 203 0.817654 CACCTCCTATGCACACGAGA 59.182 55.000 7.20 0.00 0.00 4.04
254 259 3.118261 ACTCCACTGCTCTGTTTTTCTGA 60.118 43.478 0.00 0.00 0.00 3.27
286 292 0.337428 ATATATACCCCCTCGCCCGT 59.663 55.000 0.00 0.00 0.00 5.28
295 302 6.126478 ACCAATGATGTGCCTATATATACCCC 60.126 42.308 0.00 0.00 0.00 4.95
340 347 3.435890 CCAAAAGGTGGTCTTTAGTCCCA 60.436 47.826 0.00 0.00 44.30 4.37
357 364 2.103941 GTGGCTTGAATTGGGACCAAAA 59.896 45.455 8.00 0.00 39.55 2.44
368 375 1.606313 CCCGGTTGGTGGCTTGAAT 60.606 57.895 0.00 0.00 0.00 2.57
417 425 4.202430 GGGACGAACCAGGACCAATATAAT 60.202 45.833 0.00 0.00 41.20 1.28
418 426 3.135167 GGGACGAACCAGGACCAATATAA 59.865 47.826 0.00 0.00 41.20 0.98
419 427 2.701951 GGGACGAACCAGGACCAATATA 59.298 50.000 0.00 0.00 41.20 0.86
420 428 1.489230 GGGACGAACCAGGACCAATAT 59.511 52.381 0.00 0.00 41.20 1.28
421 429 0.906775 GGGACGAACCAGGACCAATA 59.093 55.000 0.00 0.00 41.20 1.90
542 550 0.031585 CAGTTCAGTCACGAACCGGA 59.968 55.000 9.46 0.00 45.27 5.14
574 582 0.531200 CTTTCGTTCGGGCTAGGTCT 59.469 55.000 0.00 0.00 0.00 3.85
603 611 6.033966 CGATTCACTATGCACACACTAGTAA 58.966 40.000 0.00 0.00 0.00 2.24
613 621 0.468226 TCCCCCGATTCACTATGCAC 59.532 55.000 0.00 0.00 0.00 4.57
619 627 2.058595 CCTCGTCCCCCGATTCACT 61.059 63.158 0.00 0.00 46.23 3.41
620 628 2.499685 CCTCGTCCCCCGATTCAC 59.500 66.667 0.00 0.00 46.23 3.18
621 629 2.762459 CCCTCGTCCCCCGATTCA 60.762 66.667 0.00 0.00 46.23 2.57
622 630 3.547513 CCCCTCGTCCCCCGATTC 61.548 72.222 0.00 0.00 46.23 2.52
623 631 3.937372 AACCCCTCGTCCCCCGATT 62.937 63.158 0.00 0.00 46.23 3.34
624 632 3.937372 AAACCCCTCGTCCCCCGAT 62.937 63.158 0.00 0.00 46.23 4.18
625 633 4.644288 AAACCCCTCGTCCCCCGA 62.644 66.667 0.00 0.00 45.00 5.14
626 634 3.200329 AAAAACCCCTCGTCCCCCG 62.200 63.158 0.00 0.00 38.13 5.73
627 635 2.848784 AAAAACCCCTCGTCCCCC 59.151 61.111 0.00 0.00 0.00 5.40
641 649 1.957877 CCAAACGCAGTAGGGGAAAAA 59.042 47.619 0.00 0.00 45.00 1.94
642 650 1.611519 CCAAACGCAGTAGGGGAAAA 58.388 50.000 0.00 0.00 45.00 2.29
643 651 3.332706 CCAAACGCAGTAGGGGAAA 57.667 52.632 0.00 0.00 45.00 3.13
656 664 1.314730 TCCTTGCTTCGTTCCCAAAC 58.685 50.000 0.00 0.00 0.00 2.93
657 665 1.953686 CTTCCTTGCTTCGTTCCCAAA 59.046 47.619 0.00 0.00 0.00 3.28
658 666 1.142060 TCTTCCTTGCTTCGTTCCCAA 59.858 47.619 0.00 0.00 0.00 4.12
659 667 0.762418 TCTTCCTTGCTTCGTTCCCA 59.238 50.000 0.00 0.00 0.00 4.37
660 668 1.807142 CTTCTTCCTTGCTTCGTTCCC 59.193 52.381 0.00 0.00 0.00 3.97
661 669 2.767505 TCTTCTTCCTTGCTTCGTTCC 58.232 47.619 0.00 0.00 0.00 3.62
662 670 5.049405 TCAAATCTTCTTCCTTGCTTCGTTC 60.049 40.000 0.00 0.00 0.00 3.95
663 671 4.821805 TCAAATCTTCTTCCTTGCTTCGTT 59.178 37.500 0.00 0.00 0.00 3.85
664 672 4.214332 GTCAAATCTTCTTCCTTGCTTCGT 59.786 41.667 0.00 0.00 0.00 3.85
665 673 4.667668 CGTCAAATCTTCTTCCTTGCTTCG 60.668 45.833 0.00 0.00 0.00 3.79
666 674 4.378874 CCGTCAAATCTTCTTCCTTGCTTC 60.379 45.833 0.00 0.00 0.00 3.86
667 675 3.503748 CCGTCAAATCTTCTTCCTTGCTT 59.496 43.478 0.00 0.00 0.00 3.91
668 676 3.077359 CCGTCAAATCTTCTTCCTTGCT 58.923 45.455 0.00 0.00 0.00 3.91
669 677 2.414691 GCCGTCAAATCTTCTTCCTTGC 60.415 50.000 0.00 0.00 0.00 4.01
670 678 2.162408 GGCCGTCAAATCTTCTTCCTTG 59.838 50.000 0.00 0.00 0.00 3.61
671 679 2.224769 TGGCCGTCAAATCTTCTTCCTT 60.225 45.455 0.00 0.00 0.00 3.36
672 680 1.351017 TGGCCGTCAAATCTTCTTCCT 59.649 47.619 0.00 0.00 0.00 3.36
673 681 1.821216 TGGCCGTCAAATCTTCTTCC 58.179 50.000 0.00 0.00 0.00 3.46
674 682 4.440839 AAATGGCCGTCAAATCTTCTTC 57.559 40.909 0.00 0.00 0.00 2.87
675 683 4.871933 AAAATGGCCGTCAAATCTTCTT 57.128 36.364 0.00 0.00 0.00 2.52
676 684 4.871933 AAAAATGGCCGTCAAATCTTCT 57.128 36.364 0.00 0.00 0.00 2.85
700 708 4.991687 TCGCATCACAGTTGTACAATACAA 59.008 37.500 12.26 0.00 45.66 2.41
701 709 4.387559 GTCGCATCACAGTTGTACAATACA 59.612 41.667 12.26 0.00 36.79 2.29
702 710 4.201685 GGTCGCATCACAGTTGTACAATAC 60.202 45.833 12.26 0.00 0.00 1.89
703 711 3.930229 GGTCGCATCACAGTTGTACAATA 59.070 43.478 12.26 0.00 0.00 1.90
704 712 2.742053 GGTCGCATCACAGTTGTACAAT 59.258 45.455 12.26 0.00 0.00 2.71
705 713 2.139917 GGTCGCATCACAGTTGTACAA 58.860 47.619 3.59 3.59 0.00 2.41
706 714 1.790755 GGTCGCATCACAGTTGTACA 58.209 50.000 0.00 0.00 0.00 2.90
707 715 0.713883 CGGTCGCATCACAGTTGTAC 59.286 55.000 0.00 0.00 0.00 2.90
708 716 0.389296 CCGGTCGCATCACAGTTGTA 60.389 55.000 0.00 0.00 0.00 2.41
709 717 1.667830 CCGGTCGCATCACAGTTGT 60.668 57.895 0.00 0.00 0.00 3.32
710 718 1.374125 TCCGGTCGCATCACAGTTG 60.374 57.895 0.00 0.00 0.00 3.16
711 719 1.374252 GTCCGGTCGCATCACAGTT 60.374 57.895 0.00 0.00 0.00 3.16
712 720 2.261671 GTCCGGTCGCATCACAGT 59.738 61.111 0.00 0.00 0.00 3.55
713 721 2.812542 TTCGTCCGGTCGCATCACAG 62.813 60.000 16.54 0.00 0.00 3.66
714 722 2.423290 TTTCGTCCGGTCGCATCACA 62.423 55.000 16.54 0.00 0.00 3.58
715 723 1.735198 TTTCGTCCGGTCGCATCAC 60.735 57.895 16.54 0.00 0.00 3.06
716 724 1.735198 GTTTCGTCCGGTCGCATCA 60.735 57.895 16.54 0.00 0.00 3.07
717 725 0.179156 TAGTTTCGTCCGGTCGCATC 60.179 55.000 16.54 4.98 0.00 3.91
718 726 0.179145 CTAGTTTCGTCCGGTCGCAT 60.179 55.000 16.54 4.56 0.00 4.73
719 727 1.210931 CTAGTTTCGTCCGGTCGCA 59.789 57.895 16.54 2.15 0.00 5.10
720 728 2.157073 GCTAGTTTCGTCCGGTCGC 61.157 63.158 16.54 2.65 0.00 5.19
721 729 1.069378 GTGCTAGTTTCGTCCGGTCG 61.069 60.000 15.22 15.22 0.00 4.79
722 730 0.735287 GGTGCTAGTTTCGTCCGGTC 60.735 60.000 0.00 0.00 0.00 4.79
723 731 1.291272 GGTGCTAGTTTCGTCCGGT 59.709 57.895 0.00 0.00 0.00 5.28
724 732 0.736325 CTGGTGCTAGTTTCGTCCGG 60.736 60.000 0.00 0.00 0.00 5.14
725 733 0.038526 ACTGGTGCTAGTTTCGTCCG 60.039 55.000 0.00 0.00 0.00 4.79
726 734 1.000506 TGACTGGTGCTAGTTTCGTCC 59.999 52.381 0.00 0.00 0.00 4.79
727 735 2.329379 CTGACTGGTGCTAGTTTCGTC 58.671 52.381 0.00 0.00 0.00 4.20
728 736 1.605712 GCTGACTGGTGCTAGTTTCGT 60.606 52.381 0.00 0.00 0.00 3.85
729 737 1.071605 GCTGACTGGTGCTAGTTTCG 58.928 55.000 0.00 0.00 0.00 3.46
730 738 2.072298 CAGCTGACTGGTGCTAGTTTC 58.928 52.381 8.42 0.00 40.48 2.78
731 739 2.175878 CAGCTGACTGGTGCTAGTTT 57.824 50.000 8.42 0.00 40.48 2.66
732 740 3.923354 CAGCTGACTGGTGCTAGTT 57.077 52.632 8.42 0.00 40.48 2.24
741 749 1.667154 TACTAGGCGCCAGCTGACTG 61.667 60.000 31.54 10.99 44.37 3.51
742 750 1.379977 TACTAGGCGCCAGCTGACT 60.380 57.895 31.54 8.51 44.37 3.41
743 751 1.066587 CTACTAGGCGCCAGCTGAC 59.933 63.158 31.54 1.25 44.37 3.51
744 752 2.786495 GCTACTAGGCGCCAGCTGA 61.786 63.158 31.54 8.64 44.37 4.26
745 753 2.279784 GCTACTAGGCGCCAGCTG 60.280 66.667 31.54 17.25 44.37 4.24
780 788 9.793259 GGTCCCACATATTAATAGATTTCTGAA 57.207 33.333 1.02 0.00 0.00 3.02
781 789 9.170890 AGGTCCCACATATTAATAGATTTCTGA 57.829 33.333 1.02 0.00 0.00 3.27
786 794 9.574577 TGGATAGGTCCCACATATTAATAGATT 57.425 33.333 1.02 0.00 44.41 2.40
801 809 0.988678 AAGCTGGGTGGATAGGTCCC 60.989 60.000 0.00 0.00 44.41 4.46
802 810 0.919710 AAAGCTGGGTGGATAGGTCC 59.080 55.000 0.00 0.00 45.31 4.46
803 811 2.808906 AAAAGCTGGGTGGATAGGTC 57.191 50.000 0.00 0.00 0.00 3.85
804 812 4.881157 ATTAAAAGCTGGGTGGATAGGT 57.119 40.909 0.00 0.00 0.00 3.08
805 813 6.306987 ACATATTAAAAGCTGGGTGGATAGG 58.693 40.000 0.00 0.00 0.00 2.57
806 814 7.390718 GGTACATATTAAAAGCTGGGTGGATAG 59.609 40.741 0.00 0.00 0.00 2.08
807 815 7.147284 TGGTACATATTAAAAGCTGGGTGGATA 60.147 37.037 0.00 0.00 0.00 2.59
808 816 6.068670 GGTACATATTAAAAGCTGGGTGGAT 58.931 40.000 0.00 0.00 0.00 3.41
809 817 5.044772 TGGTACATATTAAAAGCTGGGTGGA 60.045 40.000 0.00 0.00 0.00 4.02
810 818 5.197451 TGGTACATATTAAAAGCTGGGTGG 58.803 41.667 0.00 0.00 0.00 4.61
811 819 6.151985 TGTTGGTACATATTAAAAGCTGGGTG 59.848 38.462 0.00 0.00 39.30 4.61
812 820 6.249951 TGTTGGTACATATTAAAAGCTGGGT 58.750 36.000 0.00 0.00 39.30 4.51
813 821 6.767524 TGTTGGTACATATTAAAAGCTGGG 57.232 37.500 0.00 0.00 39.30 4.45
814 822 9.950680 CTAATGTTGGTACATATTAAAAGCTGG 57.049 33.333 0.00 0.00 44.14 4.85
826 834 9.905713 ATTTAGACACATCTAATGTTGGTACAT 57.094 29.630 0.00 0.00 44.99 2.29
827 835 9.733556 AATTTAGACACATCTAATGTTGGTACA 57.266 29.630 0.00 0.00 44.99 2.90
891 899 8.250332 GCATTTGATTCATTTAGTAGGTTCCAA 58.750 33.333 0.00 0.00 0.00 3.53
892 900 7.395772 TGCATTTGATTCATTTAGTAGGTTCCA 59.604 33.333 0.00 0.00 0.00 3.53
893 901 7.771183 TGCATTTGATTCATTTAGTAGGTTCC 58.229 34.615 0.00 0.00 0.00 3.62
894 902 9.294030 CTTGCATTTGATTCATTTAGTAGGTTC 57.706 33.333 0.00 0.00 0.00 3.62
895 903 8.253113 CCTTGCATTTGATTCATTTAGTAGGTT 58.747 33.333 0.00 0.00 0.00 3.50
896 904 7.615365 TCCTTGCATTTGATTCATTTAGTAGGT 59.385 33.333 0.00 0.00 0.00 3.08
897 905 7.999679 TCCTTGCATTTGATTCATTTAGTAGG 58.000 34.615 0.00 0.00 0.00 3.18
931 939 4.690748 CAGCGTTCACTTCATCTTAAGGAA 59.309 41.667 1.85 0.00 0.00 3.36
932 940 4.021456 TCAGCGTTCACTTCATCTTAAGGA 60.021 41.667 1.85 0.00 0.00 3.36
934 942 4.092091 GGTCAGCGTTCACTTCATCTTAAG 59.908 45.833 0.00 0.00 0.00 1.85
936 944 3.006430 TGGTCAGCGTTCACTTCATCTTA 59.994 43.478 0.00 0.00 0.00 2.10
942 950 1.661112 GCTATGGTCAGCGTTCACTTC 59.339 52.381 0.00 0.00 0.00 3.01
966 974 9.800572 CATCACCTAGGCTCTATATATAGCTAA 57.199 37.037 16.95 7.20 38.80 3.09
968 976 6.719370 GCATCACCTAGGCTCTATATATAGCT 59.281 42.308 16.95 8.72 38.80 3.32
969 977 6.491745 TGCATCACCTAGGCTCTATATATAGC 59.508 42.308 9.30 10.83 35.40 2.97
977 985 1.032794 CGTGCATCACCTAGGCTCTA 58.967 55.000 9.30 0.00 35.40 2.43
996 1008 9.939047 GTATATGTTTTTGATCGATACGTGATC 57.061 33.333 0.00 2.54 42.06 2.92
1017 1029 7.561722 CAGGCAGGTGACTAGGTATATGTATAT 59.438 40.741 0.00 0.00 40.21 0.86
1018 1030 6.890268 CAGGCAGGTGACTAGGTATATGTATA 59.110 42.308 0.00 0.00 40.21 1.47
1086 1098 2.103042 GGCAACCGCTCTAGCACTG 61.103 63.158 2.44 0.00 42.21 3.66
1154 1166 2.100916 GCTCGAGACTTACTTGCCCATA 59.899 50.000 18.75 0.00 0.00 2.74
1182 1194 4.828939 TGTTCCATCACAGCATCTTTTTCT 59.171 37.500 0.00 0.00 0.00 2.52
1277 1289 1.272490 CTAGGAGGTTCACTGAACGCA 59.728 52.381 14.43 0.00 42.78 5.24
1296 1308 3.371591 CGGTAAATGCATTGCAAATTGCT 59.628 39.130 22.00 8.16 45.31 3.91
1330 1342 2.175931 ACCTCGGTAGATGGATCTGAGT 59.824 50.000 0.00 0.00 37.76 3.41
1339 1351 1.443407 CAGCCCACCTCGGTAGATG 59.557 63.158 0.00 0.00 0.00 2.90
1383 1395 3.504906 CACAGTTGTCTCCTTCATGCAAT 59.495 43.478 0.00 0.00 0.00 3.56
1482 1513 6.151144 ACATGGAGATGGTAAGTAAACAAAGC 59.849 38.462 0.00 0.00 33.39 3.51
1579 1610 4.087892 AGATCGGCCTTGCACGCT 62.088 61.111 0.00 0.00 0.00 5.07
1628 1660 5.459762 GGATGCCATGAAAAACAATGTATCG 59.540 40.000 0.00 0.00 31.43 2.92
1635 1667 1.342496 TGCGGATGCCATGAAAAACAA 59.658 42.857 0.00 0.00 41.78 2.83
1697 1730 7.180766 TGCAAGATCAAATAGAAGGGGAAAATT 59.819 33.333 0.00 0.00 0.00 1.82
1764 2108 7.483307 TGAATCTCCACAACTTTCTCTTTTTG 58.517 34.615 0.00 0.00 0.00 2.44
1945 2294 9.672673 CAGAGATTAAAATCCCTCTCAAAACTA 57.327 33.333 4.74 0.00 37.25 2.24
1970 2320 3.909995 CTGGGGATATAAGGATCACACCA 59.090 47.826 0.00 0.00 30.15 4.17
1972 2322 5.568620 AACTGGGGATATAAGGATCACAC 57.431 43.478 0.00 0.00 30.15 3.82
2048 2398 2.020720 CAACCAGTGGTGTGCAAACTA 58.979 47.619 17.56 0.00 35.34 2.24
2084 2434 3.054434 TCTGACCCATATTCAACACCTGG 60.054 47.826 0.00 0.00 0.00 4.45
2111 2461 4.444536 AGAAAACCAAGCTGTGTACGTAA 58.555 39.130 0.00 0.00 0.00 3.18
2119 2469 4.706962 ACTTTCAGAAGAAAACCAAGCTGT 59.293 37.500 0.00 0.00 42.78 4.40
2239 2589 6.238621 CCACAACTAGTACATGAAAGCAAACA 60.239 38.462 0.00 0.00 0.00 2.83
2476 2853 8.322906 TGAATTATGTTGACTAGGACAAAGTG 57.677 34.615 6.27 0.00 0.00 3.16
2555 2932 2.867624 TGGATCAGGATGCTTATTGGC 58.132 47.619 2.49 0.00 34.76 4.52
2559 2936 5.068636 GTGTTCATGGATCAGGATGCTTAT 58.931 41.667 2.49 0.00 34.76 1.73
2563 2940 2.928334 AGTGTTCATGGATCAGGATGC 58.072 47.619 0.00 0.00 34.76 3.91
2656 3033 5.221185 GCAATCACATGAACAGGCTAATCAT 60.221 40.000 0.00 8.05 34.22 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.