Multiple sequence alignment - TraesCS6B01G386200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G386200 chr6B 100.000 5059 0 0 1 5059 660681203 660676145 0.000000e+00 9343.0
1 TraesCS6B01G386200 chr6B 86.631 187 19 6 489 669 204330381 204330567 8.590000e-48 202.0
2 TraesCS6B01G386200 chr6D 91.381 2541 148 30 2068 4595 436889547 436887065 0.000000e+00 3413.0
3 TraesCS6B01G386200 chr6D 89.161 1430 84 30 666 2072 436891136 436889755 0.000000e+00 1716.0
4 TraesCS6B01G386200 chr6D 90.678 472 32 5 4596 5059 436887023 436886556 7.200000e-173 617.0
5 TraesCS6B01G386200 chr6A 87.391 2522 215 60 2122 4595 585198850 585196384 0.000000e+00 2800.0
6 TraesCS6B01G386200 chr6A 90.522 1361 75 19 665 1995 585200299 585198963 0.000000e+00 1749.0
7 TraesCS6B01G386200 chr6A 88.747 471 35 9 4596 5059 585196345 585195886 1.230000e-155 560.0
8 TraesCS6B01G386200 chr2B 88.636 352 16 5 162 489 595257207 595256856 1.700000e-109 407.0
9 TraesCS6B01G386200 chr2B 87.535 353 19 3 162 489 629790930 629790578 7.950000e-103 385.0
10 TraesCS6B01G386200 chr2B 87.500 352 20 6 162 489 747792805 747792454 7.950000e-103 385.0
11 TraesCS6B01G386200 chr2B 82.102 352 19 7 162 489 373289315 373289646 1.400000e-65 261.0
12 TraesCS6B01G386200 chr3B 88.385 353 16 7 162 489 704907263 704907615 7.890000e-108 401.0
13 TraesCS6B01G386200 chr3B 87.216 352 17 7 162 489 643312269 643311922 4.780000e-100 375.0
14 TraesCS6B01G386200 chr3B 85.664 286 34 6 193 476 134032802 134033082 1.380000e-75 294.0
15 TraesCS6B01G386200 chr3B 91.045 134 10 2 34 167 112452081 112452212 4.020000e-41 180.0
16 TraesCS6B01G386200 chr3B 98.246 57 1 0 2 58 704907208 704907264 3.220000e-17 100.0
17 TraesCS6B01G386200 chr4B 87.714 350 19 6 162 487 105555153 105554804 2.210000e-103 387.0
18 TraesCS6B01G386200 chr4B 87.500 352 19 7 162 489 614121611 614121261 2.860000e-102 383.0
19 TraesCS6B01G386200 chr4B 80.696 575 39 32 162 665 53580982 53581555 1.030000e-101 381.0
20 TraesCS6B01G386200 chr4B 86.648 352 17 4 162 489 504239968 504239623 3.720000e-96 363.0
21 TraesCS6B01G386200 chr4B 89.617 183 13 5 489 665 621682372 621682190 1.420000e-55 228.0
22 TraesCS6B01G386200 chr4B 89.560 182 14 5 489 665 412201541 412201360 5.100000e-55 226.0
23 TraesCS6B01G386200 chr4B 89.011 182 14 6 489 665 611409979 611409799 2.370000e-53 220.0
24 TraesCS6B01G386200 chr4B 87.634 186 16 5 489 667 105554750 105554565 5.130000e-50 209.0
25 TraesCS6B01G386200 chr4B 96.552 58 2 0 1 58 412202019 412201962 4.170000e-16 97.1
26 TraesCS6B01G386200 chr4B 96.552 58 2 0 1 58 504240024 504239967 4.170000e-16 97.1
27 TraesCS6B01G386200 chr4B 96.552 58 2 0 1 58 614121667 614121610 4.170000e-16 97.1
28 TraesCS6B01G386200 chr1B 87.571 354 18 9 162 489 561306837 561307190 2.210000e-103 387.0
29 TraesCS6B01G386200 chr1B 92.424 132 7 3 33 164 604145235 604145107 8.650000e-43 185.0
30 TraesCS6B01G386200 chr1B 98.276 58 1 0 1 58 308538946 308539003 8.960000e-18 102.0
31 TraesCS6B01G386200 chr1B 98.276 58 1 0 1 58 374893731 374893788 8.960000e-18 102.0
32 TraesCS6B01G386200 chr1B 96.552 58 2 0 1 58 545348 545291 4.170000e-16 97.1
33 TraesCS6B01G386200 chr7B 87.252 353 20 7 162 489 449621100 449621452 3.700000e-101 379.0
34 TraesCS6B01G386200 chr7B 87.500 184 17 6 193 374 630428670 630428849 1.850000e-49 207.0
35 TraesCS6B01G386200 chr7B 96.522 115 4 0 53 167 27494505 27494391 1.860000e-44 191.0
36 TraesCS6B01G386200 chr5D 87.870 338 17 2 162 475 436778075 436777738 4.780000e-100 375.0
37 TraesCS6B01G386200 chr5D 95.652 115 5 0 55 169 293784600 293784486 8.650000e-43 185.0
38 TraesCS6B01G386200 chr5B 87.870 338 17 2 162 475 692642646 692642983 4.780000e-100 375.0
39 TraesCS6B01G386200 chr5B 89.130 184 15 5 489 667 692643376 692643559 1.830000e-54 224.0
40 TraesCS6B01G386200 chr5B 87.432 183 17 4 489 665 33896443 33896625 6.640000e-49 206.0
41 TraesCS6B01G386200 chr5B 98.246 57 1 0 2 58 648667284 648667340 3.220000e-17 100.0
42 TraesCS6B01G386200 chr2D 87.432 183 17 5 489 665 558086870 558086688 6.640000e-49 206.0
43 TraesCS6B01G386200 chr2D 96.552 58 2 0 1 58 558087346 558087289 4.170000e-16 97.1
44 TraesCS6B01G386200 chr7D 99.115 113 1 0 52 164 52468642 52468754 2.390000e-48 204.0
45 TraesCS6B01G386200 chr7D 96.581 117 2 2 49 163 227507111 227507227 5.170000e-45 193.0
46 TraesCS6B01G386200 chr7D 87.413 143 14 4 3000 3141 561894825 561894686 1.460000e-35 161.0
47 TraesCS6B01G386200 chr2A 91.852 135 8 3 31 163 16547072 16546939 8.650000e-43 185.0
48 TraesCS6B01G386200 chrUn 94.915 118 4 1 46 163 91489023 91488908 3.110000e-42 183.0
49 TraesCS6B01G386200 chr4A 91.667 132 11 0 57 188 596834635 596834766 3.110000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G386200 chr6B 660676145 660681203 5058 True 9343.000000 9343 100.000000 1 5059 1 chr6B.!!$R1 5058
1 TraesCS6B01G386200 chr6D 436886556 436891136 4580 True 1915.333333 3413 90.406667 666 5059 3 chr6D.!!$R1 4393
2 TraesCS6B01G386200 chr6A 585195886 585200299 4413 True 1703.000000 2800 88.886667 665 5059 3 chr6A.!!$R1 4394
3 TraesCS6B01G386200 chr4B 53580982 53581555 573 False 381.000000 381 80.696000 162 665 1 chr4B.!!$F1 503
4 TraesCS6B01G386200 chr4B 105554565 105555153 588 True 298.000000 387 87.674000 162 667 2 chr4B.!!$R3 505
5 TraesCS6B01G386200 chr5B 692642646 692643559 913 False 299.500000 375 88.500000 162 667 2 chr5B.!!$F3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
73 74 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
1590 2052 0.107654 AAGCCGTATGTGCCTCTTCC 60.108 55.0 0.00 0.00 0.00 3.46 F
1886 2359 0.033504 ATACCATTACAGGCGCCTCG 59.966 55.0 30.29 23.98 0.00 4.63 F
2924 3672 0.457035 CAACTATGGTGGCATGCACC 59.543 55.0 24.12 24.12 42.80 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 2171 0.109597 CGCACAGCAGGGAACAAATC 60.110 55.0 0.00 0.0 0.00 2.17 R
1722 2184 0.232303 GTCGAACTTCAACCGCACAG 59.768 55.0 0.00 0.0 0.00 3.66 R
2902 3649 0.179129 GCATGCCACCATAGTTGCAC 60.179 55.0 6.36 0.0 46.34 4.57 R
3787 4563 0.451783 CGGCCGGAAATTTGGAAGAG 59.548 55.0 20.10 0.0 0.00 2.85 R
4328 5104 0.320683 CTGTCCGGAACTGCATGTCA 60.321 55.0 5.23 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.787725 CTTGGTTGTAGTTGAAAAGTCTAGT 57.212 36.000 0.00 0.00 0.00 2.57
25 26 7.548196 TTGGTTGTAGTTGAAAAGTCTAGTG 57.452 36.000 0.00 0.00 0.00 2.74
26 27 6.053005 TGGTTGTAGTTGAAAAGTCTAGTGG 58.947 40.000 0.00 0.00 0.00 4.00
27 28 6.053650 GGTTGTAGTTGAAAAGTCTAGTGGT 58.946 40.000 0.00 0.00 0.00 4.16
28 29 6.541278 GGTTGTAGTTGAAAAGTCTAGTGGTT 59.459 38.462 0.00 0.00 0.00 3.67
29 30 7.407337 GTTGTAGTTGAAAAGTCTAGTGGTTG 58.593 38.462 0.00 0.00 0.00 3.77
30 31 6.646267 TGTAGTTGAAAAGTCTAGTGGTTGT 58.354 36.000 0.00 0.00 0.00 3.32
31 32 6.537301 TGTAGTTGAAAAGTCTAGTGGTTGTG 59.463 38.462 0.00 0.00 0.00 3.33
32 33 5.741011 AGTTGAAAAGTCTAGTGGTTGTGA 58.259 37.500 0.00 0.00 0.00 3.58
33 34 6.177610 AGTTGAAAAGTCTAGTGGTTGTGAA 58.822 36.000 0.00 0.00 0.00 3.18
34 35 6.657541 AGTTGAAAAGTCTAGTGGTTGTGAAA 59.342 34.615 0.00 0.00 0.00 2.69
35 36 6.431198 TGAAAAGTCTAGTGGTTGTGAAAC 57.569 37.500 0.00 0.00 37.35 2.78
36 37 6.177610 TGAAAAGTCTAGTGGTTGTGAAACT 58.822 36.000 0.00 0.00 38.04 2.66
37 38 7.332557 TGAAAAGTCTAGTGGTTGTGAAACTA 58.667 34.615 0.00 0.00 38.04 2.24
38 39 7.990886 TGAAAAGTCTAGTGGTTGTGAAACTAT 59.009 33.333 0.00 0.00 38.04 2.12
39 40 7.730364 AAAGTCTAGTGGTTGTGAAACTATG 57.270 36.000 0.00 0.00 38.04 2.23
40 41 6.420913 AGTCTAGTGGTTGTGAAACTATGT 57.579 37.500 0.00 0.00 38.04 2.29
41 42 6.223852 AGTCTAGTGGTTGTGAAACTATGTG 58.776 40.000 0.00 0.00 38.04 3.21
42 43 5.989777 GTCTAGTGGTTGTGAAACTATGTGT 59.010 40.000 0.00 0.00 38.04 3.72
43 44 6.482308 GTCTAGTGGTTGTGAAACTATGTGTT 59.518 38.462 0.00 0.00 41.29 3.32
56 57 7.986085 AAACTATGTGTTTGCTATCTGAACT 57.014 32.000 0.00 0.00 46.08 3.01
58 59 8.480643 AACTATGTGTTTGCTATCTGAACTAC 57.519 34.615 0.00 0.00 34.84 2.73
59 60 7.841956 ACTATGTGTTTGCTATCTGAACTACT 58.158 34.615 0.00 0.00 0.00 2.57
60 61 7.976734 ACTATGTGTTTGCTATCTGAACTACTC 59.023 37.037 0.00 0.00 0.00 2.59
61 62 5.479306 TGTGTTTGCTATCTGAACTACTCC 58.521 41.667 0.00 0.00 0.00 3.85
62 63 4.870991 GTGTTTGCTATCTGAACTACTCCC 59.129 45.833 0.00 0.00 0.00 4.30
63 64 4.777896 TGTTTGCTATCTGAACTACTCCCT 59.222 41.667 0.00 0.00 0.00 4.20
64 65 5.105310 TGTTTGCTATCTGAACTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
65 66 3.567397 TGCTATCTGAACTACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
66 67 2.554893 GCTATCTGAACTACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
67 68 2.830651 ATCTGAACTACTCCCTCCGT 57.169 50.000 0.00 0.00 0.00 4.69
68 69 2.599408 TCTGAACTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
69 70 2.444421 TCTGAACTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 37.02 3.95
70 71 1.132643 CTGAACTACTCCCTCCGTTCG 59.867 57.143 0.00 0.00 38.78 3.95
71 72 0.455005 GAACTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
72 73 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
73 74 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
74 75 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
75 76 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
76 77 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
77 78 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
78 79 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
79 80 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
80 81 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
81 82 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
82 83 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
83 84 4.189231 CCTCCGTTCGGAATTATTTGTCT 58.811 43.478 14.79 0.00 33.41 3.41
84 85 4.270325 CCTCCGTTCGGAATTATTTGTCTC 59.730 45.833 14.79 0.00 33.41 3.36
85 86 3.861113 TCCGTTCGGAATTATTTGTCTCG 59.139 43.478 11.66 0.00 0.00 4.04
86 87 3.000925 CCGTTCGGAATTATTTGTCTCGG 59.999 47.826 5.19 0.00 0.00 4.63
87 88 3.861113 CGTTCGGAATTATTTGTCTCGGA 59.139 43.478 0.00 0.00 0.00 4.55
88 89 4.327898 CGTTCGGAATTATTTGTCTCGGAA 59.672 41.667 0.00 0.00 0.00 4.30
89 90 5.163933 CGTTCGGAATTATTTGTCTCGGAAA 60.164 40.000 0.00 0.00 31.52 3.13
90 91 6.456449 CGTTCGGAATTATTTGTCTCGGAAAT 60.456 38.462 0.00 0.00 31.52 2.17
91 92 6.358118 TCGGAATTATTTGTCTCGGAAATG 57.642 37.500 0.00 0.00 0.00 2.32
92 93 5.295787 TCGGAATTATTTGTCTCGGAAATGG 59.704 40.000 0.00 0.00 0.00 3.16
93 94 5.295787 CGGAATTATTTGTCTCGGAAATGGA 59.704 40.000 0.00 0.00 0.00 3.41
94 95 6.017109 CGGAATTATTTGTCTCGGAAATGGAT 60.017 38.462 0.00 0.00 0.00 3.41
95 96 7.141363 GGAATTATTTGTCTCGGAAATGGATG 58.859 38.462 0.00 0.00 0.00 3.51
96 97 7.201821 GGAATTATTTGTCTCGGAAATGGATGT 60.202 37.037 0.00 0.00 0.00 3.06
97 98 8.746052 AATTATTTGTCTCGGAAATGGATGTA 57.254 30.769 0.00 0.00 0.00 2.29
98 99 8.924511 ATTATTTGTCTCGGAAATGGATGTAT 57.075 30.769 0.00 0.00 0.00 2.29
99 100 6.867662 ATTTGTCTCGGAAATGGATGTATC 57.132 37.500 0.00 0.00 0.00 2.24
100 101 5.614324 TTGTCTCGGAAATGGATGTATCT 57.386 39.130 0.00 0.00 0.00 1.98
101 102 6.724893 TTGTCTCGGAAATGGATGTATCTA 57.275 37.500 0.00 0.00 0.00 1.98
102 103 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
103 104 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
104 105 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
105 106 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
106 107 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
107 108 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
108 109 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
109 110 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
110 111 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
134 135 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
135 136 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
136 137 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
137 138 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
138 139 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
139 140 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
140 141 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
141 142 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
142 143 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
143 144 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
144 145 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
145 146 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
146 147 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
147 148 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
148 149 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
149 150 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
150 151 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
151 152 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
152 153 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
153 154 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
154 155 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
155 156 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
156 157 3.184541 CGACAAGTAATTCCGAACGGAT 58.815 45.455 16.57 5.74 44.74 4.18
157 158 3.000078 CGACAAGTAATTCCGAACGGATG 60.000 47.826 16.57 12.63 44.74 3.51
158 159 3.267483 ACAAGTAATTCCGAACGGATGG 58.733 45.455 16.57 2.01 44.74 3.51
159 160 3.055675 ACAAGTAATTCCGAACGGATGGA 60.056 43.478 16.57 2.72 44.74 3.41
160 161 3.454371 AGTAATTCCGAACGGATGGAG 57.546 47.619 16.57 0.00 44.74 3.86
282 306 6.825610 TGCCCAAGTTTAATTGTTTGAGATT 58.174 32.000 0.00 0.00 0.00 2.40
331 378 9.657419 AGTTTGAGATCTGTTGTTTTTGAAAAT 57.343 25.926 0.00 0.00 0.00 1.82
376 423 2.038837 GCAAGACCCTACCGCCAAC 61.039 63.158 0.00 0.00 0.00 3.77
381 428 3.387947 CCCTACCGCCAACGACCT 61.388 66.667 0.00 0.00 43.93 3.85
415 462 4.789173 TAGCCTACCGCCAGCCCA 62.789 66.667 0.00 0.00 38.78 5.36
444 491 2.288025 GGTTGACCCTACCGCCAGA 61.288 63.158 0.00 0.00 0.00 3.86
476 523 8.277713 CGATTTTCTCGTTACAGAAGGTTTTTA 58.722 33.333 0.00 0.00 42.56 1.52
565 993 1.713297 AGGCTGTATAACCCTACCGG 58.287 55.000 0.00 0.00 37.81 5.28
670 1103 3.268013 ACACGAAATTTTGCCTTCTCG 57.732 42.857 5.27 0.00 0.00 4.04
673 1106 3.058914 CACGAAATTTTGCCTTCTCGAGT 60.059 43.478 13.13 0.00 0.00 4.18
685 1118 4.732355 GCCTTCTCGAGTAGTCTGAACATC 60.732 50.000 16.67 0.00 0.00 3.06
713 1151 0.604511 AAAAGGAGTACGGGCCGTTG 60.605 55.000 38.73 6.03 41.54 4.10
831 1269 1.203994 AGCTACACGTAAAGCATCCGT 59.796 47.619 19.86 0.00 41.32 4.69
834 1272 0.734942 ACACGTAAAGCATCCGTCCG 60.735 55.000 0.00 0.00 31.46 4.79
933 1371 2.820037 GCCGCGGAGGAGAAAAGG 60.820 66.667 33.48 0.00 45.00 3.11
938 1376 2.084546 CGCGGAGGAGAAAAGGAAAAT 58.915 47.619 0.00 0.00 0.00 1.82
939 1377 2.096013 CGCGGAGGAGAAAAGGAAAATC 59.904 50.000 0.00 0.00 0.00 2.17
940 1378 2.423892 GCGGAGGAGAAAAGGAAAATCC 59.576 50.000 0.00 0.00 36.58 3.01
941 1379 2.678336 CGGAGGAGAAAAGGAAAATCCG 59.322 50.000 0.00 0.00 42.75 4.18
943 1381 4.332828 GGAGGAGAAAAGGAAAATCCGAA 58.667 43.478 0.00 0.00 42.75 4.30
945 1383 4.986783 AGGAGAAAAGGAAAATCCGAACT 58.013 39.130 0.00 0.00 42.75 3.01
946 1384 5.386060 AGGAGAAAAGGAAAATCCGAACTT 58.614 37.500 0.00 0.00 42.75 2.66
947 1385 5.833667 AGGAGAAAAGGAAAATCCGAACTTT 59.166 36.000 0.00 0.00 42.75 2.66
948 1386 6.016192 AGGAGAAAAGGAAAATCCGAACTTTC 60.016 38.462 0.00 7.58 42.75 2.62
957 1395 3.253955 CGAACTTTCGCCCCACAG 58.746 61.111 0.00 0.00 44.26 3.66
958 1396 2.325082 CGAACTTTCGCCCCACAGG 61.325 63.158 0.00 0.00 44.26 4.00
959 1397 1.072505 GAACTTTCGCCCCACAGGA 59.927 57.895 0.00 0.00 38.24 3.86
960 1398 0.536460 GAACTTTCGCCCCACAGGAA 60.536 55.000 0.00 0.00 38.24 3.36
1064 1502 1.125633 AACCAGGACAACAGGTACGT 58.874 50.000 0.00 0.00 34.56 3.57
1157 1595 0.467804 GGGGAGCTCTGATTCTGACC 59.532 60.000 14.64 2.34 0.00 4.02
1163 1601 1.577736 CTCTGATTCTGACCCTGGGT 58.422 55.000 20.72 20.72 39.44 4.51
1264 1702 3.381045 CTCTGCAACGACAACAGTAAGA 58.619 45.455 0.00 0.00 33.12 2.10
1265 1703 3.381045 TCTGCAACGACAACAGTAAGAG 58.619 45.455 0.00 0.00 33.12 2.85
1301 1752 0.448593 CGTCCTTCACTCCGAGTCTC 59.551 60.000 0.00 0.00 0.00 3.36
1302 1753 0.448593 GTCCTTCACTCCGAGTCTCG 59.551 60.000 15.53 15.53 40.07 4.04
1355 1813 7.620880 TGATTGTGTAGCTCCTAGTGTAAAAT 58.379 34.615 0.00 0.00 0.00 1.82
1359 1817 4.708421 TGTAGCTCCTAGTGTAAAATCGGT 59.292 41.667 0.00 0.00 0.00 4.69
1367 1825 7.318141 TCCTAGTGTAAAATCGGTTACTTCTG 58.682 38.462 0.00 0.00 35.41 3.02
1374 1832 4.650754 AATCGGTTACTTCTGCGTAGAT 57.349 40.909 3.38 0.00 31.81 1.98
1422 1880 3.370840 TGTGCTTCCTGCCTAATTCAT 57.629 42.857 0.00 0.00 42.00 2.57
1483 1941 5.125417 GGTAGAACCAGATAGCAATGCAAAA 59.875 40.000 8.35 0.00 38.42 2.44
1499 1959 2.401720 GCAAAATCTTTCTGTCAACGCG 59.598 45.455 3.53 3.53 0.00 6.01
1506 1966 1.360820 TTCTGTCAACGCGTTGTTCA 58.639 45.000 41.16 35.74 39.29 3.18
1516 1976 3.868835 ACGCGTTGTTCAGTGATTAAAC 58.131 40.909 5.58 0.00 0.00 2.01
1519 1979 3.252458 GCGTTGTTCAGTGATTAAACCCT 59.748 43.478 0.00 0.00 0.00 4.34
1590 2052 0.107654 AAGCCGTATGTGCCTCTTCC 60.108 55.000 0.00 0.00 0.00 3.46
1611 2073 0.178992 TGGTTGCAGAACTTGGAGGG 60.179 55.000 0.00 0.00 32.15 4.30
1709 2171 2.540931 TCTTTTCCTCGTTTTCGGTTCG 59.459 45.455 0.00 0.00 44.25 3.95
1722 2184 0.168128 CGGTTCGATTTGTTCCCTGC 59.832 55.000 0.00 0.00 0.00 4.85
1815 2288 2.905075 TGGATGATGATGTCGTTGGTC 58.095 47.619 0.00 0.00 0.00 4.02
1844 2317 1.452145 TTTTGCAGCCTTCACGGTCC 61.452 55.000 0.00 0.00 34.25 4.46
1850 2323 4.452733 CCTTCACGGTCCCCTCGC 62.453 72.222 0.00 0.00 0.00 5.03
1886 2359 0.033504 ATACCATTACAGGCGCCTCG 59.966 55.000 30.29 23.98 0.00 4.63
2017 2494 6.952358 TCACTCACCTGTTACTAATTAGGTCT 59.048 38.462 16.73 0.00 41.42 3.85
2051 2528 3.503748 GCCTGAGCACATTTAAGACTGTT 59.496 43.478 0.00 0.00 39.53 3.16
2130 2858 7.439655 GTCTAGCAGGTCCATTCTAATTAACAG 59.560 40.741 0.00 0.00 0.00 3.16
2144 2872 7.038048 TCTAATTAACAGTGCTGTCAGAGATG 58.962 38.462 3.32 0.64 44.13 2.90
2237 2969 5.426509 TCCTGACTTCCTGTGATGACATAAT 59.573 40.000 0.00 0.00 0.00 1.28
2285 3019 1.350310 ACCGAGTTTTGGACCAGGGT 61.350 55.000 0.00 0.00 31.69 4.34
2297 3031 2.446435 GACCAGGGTTGTTATGCATGT 58.554 47.619 10.16 0.00 0.00 3.21
2470 3204 6.800072 TCCTACCCAAAATTTTCAAACTGT 57.200 33.333 0.00 0.00 0.00 3.55
2478 3212 6.038492 CCAAAATTTTCAAACTGTGGCTCATT 59.962 34.615 0.00 0.00 0.00 2.57
2496 3233 8.000709 TGGCTCATTCTATTCCAGACAATTATT 58.999 33.333 0.00 0.00 31.12 1.40
2497 3234 9.507329 GGCTCATTCTATTCCAGACAATTATTA 57.493 33.333 0.00 0.00 31.12 0.98
2519 3256 4.684134 GCTGAGGCTGGGGGCAAA 62.684 66.667 0.00 0.00 44.01 3.68
2530 3267 2.755103 CTGGGGGCAAATCAGAAAGTAC 59.245 50.000 0.00 0.00 0.00 2.73
2594 3333 3.612472 TTGCTGCTAACGTTGTTAACC 57.388 42.857 11.99 0.00 0.00 2.85
2601 3342 6.522165 GCTGCTAACGTTGTTAACCTTAAATC 59.478 38.462 11.99 0.00 0.00 2.17
2757 3498 7.121315 AGGTTTAGTTCCTTCTGTATCATTTGC 59.879 37.037 0.00 0.00 30.18 3.68
2806 3547 4.969484 ACGGATTTACAGTTCTCCAAGTT 58.031 39.130 0.00 0.00 0.00 2.66
2902 3649 0.597568 TCACTGAAAAGGCAATGGCG 59.402 50.000 0.00 0.00 42.47 5.69
2924 3672 0.457035 CAACTATGGTGGCATGCACC 59.543 55.000 24.12 24.12 42.80 5.01
3008 3760 9.528489 GATCAGAATAGGGATACTTTCTAGACT 57.472 37.037 0.00 0.00 30.57 3.24
3017 3769 6.987404 GGGATACTTTCTAGACTGGATTTGTC 59.013 42.308 0.00 0.00 34.88 3.18
3033 3785 7.004086 TGGATTTGTCTTCCTACAGTTTTCAT 58.996 34.615 0.00 0.00 34.17 2.57
3095 3847 9.247126 CTGAAGATATGTAGATGTCTTTCACTG 57.753 37.037 12.24 2.53 39.44 3.66
3096 3848 8.971073 TGAAGATATGTAGATGTCTTTCACTGA 58.029 33.333 12.24 0.00 39.44 3.41
3145 3919 0.955178 AGATAGACGCCCATGAGTCG 59.045 55.000 0.00 0.00 44.92 4.18
3217 3991 4.774124 CTTCTGAGAAGGGCACAATGATA 58.226 43.478 14.32 0.00 0.00 2.15
3252 4027 3.058224 GTGGCACAAGCAACTAAGGTAAG 60.058 47.826 13.86 0.00 44.16 2.34
3302 4077 0.982704 AGCACTCTGTCATTCTGCCT 59.017 50.000 0.00 0.00 0.00 4.75
3303 4078 2.182827 AGCACTCTGTCATTCTGCCTA 58.817 47.619 0.00 0.00 0.00 3.93
3304 4079 2.568956 AGCACTCTGTCATTCTGCCTAA 59.431 45.455 0.00 0.00 0.00 2.69
3379 4154 6.763355 AGCATATCCATCAACGATTTACTCT 58.237 36.000 0.00 0.00 0.00 3.24
3496 4271 7.855784 AAATGGAAGGTTACATTTCCTTCTT 57.144 32.000 18.95 7.81 46.06 2.52
3511 4286 4.526970 TCCTTCTTGGCTATTGTGATTCC 58.473 43.478 0.00 0.00 35.26 3.01
3554 4330 5.689819 ACATATTTTGACGTGCTTCACTTC 58.310 37.500 0.00 0.00 34.00 3.01
3655 4431 9.390795 GCTAATCATCATGTTATTCACAACATC 57.609 33.333 0.00 0.00 45.18 3.06
3699 4475 5.767168 GGTGCATATAAGATCTTCTGGCTTT 59.233 40.000 12.24 0.00 0.00 3.51
3710 4486 1.140312 TCTGGCTTTGTCTGACCCTT 58.860 50.000 5.17 0.00 0.00 3.95
3711 4487 1.494721 TCTGGCTTTGTCTGACCCTTT 59.505 47.619 5.17 0.00 0.00 3.11
3714 4490 1.248486 GCTTTGTCTGACCCTTTCCC 58.752 55.000 5.17 0.00 0.00 3.97
3715 4491 1.202940 GCTTTGTCTGACCCTTTCCCT 60.203 52.381 5.17 0.00 0.00 4.20
3716 4492 2.039879 GCTTTGTCTGACCCTTTCCCTA 59.960 50.000 5.17 0.00 0.00 3.53
3719 4495 4.569719 TTGTCTGACCCTTTCCCTATTC 57.430 45.455 5.17 0.00 0.00 1.75
3721 4497 4.175962 TGTCTGACCCTTTCCCTATTCTT 58.824 43.478 5.17 0.00 0.00 2.52
3722 4498 4.225267 TGTCTGACCCTTTCCCTATTCTTC 59.775 45.833 5.17 0.00 0.00 2.87
3740 4516 9.651913 CTATTCTTCCTGCTAATCTAATCCTTC 57.348 37.037 0.00 0.00 0.00 3.46
3741 4517 7.682787 TTCTTCCTGCTAATCTAATCCTTCT 57.317 36.000 0.00 0.00 0.00 2.85
3778 4554 9.053840 TGTCTAGCAGTACATAGTGTAGAATAC 57.946 37.037 0.00 0.00 43.42 1.89
3787 4563 9.310716 GTACATAGTGTAGAATACTCCCAAAAC 57.689 37.037 0.00 0.00 43.54 2.43
3796 4572 6.610830 AGAATACTCCCAAAACTCTTCCAAA 58.389 36.000 0.00 0.00 0.00 3.28
3802 4578 4.038642 TCCCAAAACTCTTCCAAATTTCCG 59.961 41.667 0.00 0.00 0.00 4.30
3805 4581 1.545841 ACTCTTCCAAATTTCCGGCC 58.454 50.000 0.00 0.00 0.00 6.13
3840 4616 1.807142 TCACACGCAGTTTCACACAAA 59.193 42.857 0.00 0.00 41.61 2.83
3847 4623 4.123276 GCAGTTTCACACAAAATGCATG 57.877 40.909 13.08 0.00 46.58 4.06
3848 4624 3.605231 GCAGTTTCACACAAAATGCATGC 60.605 43.478 11.82 11.82 46.58 4.06
3851 4627 1.785768 TCACACAAAATGCATGCTGC 58.214 45.000 20.33 0.00 45.29 5.25
3857 4633 3.057876 CACAAAATGCATGCTGCCATTTT 60.058 39.130 20.33 18.03 44.23 1.82
3869 4645 2.762327 CTGCCATTTTATGCCTTCCAGT 59.238 45.455 0.00 0.00 0.00 4.00
3872 4648 3.734902 GCCATTTTATGCCTTCCAGTTCG 60.735 47.826 0.00 0.00 0.00 3.95
3888 4664 6.345298 TCCAGTTCGTATTCATAAGCAATCA 58.655 36.000 0.00 0.00 0.00 2.57
3998 4774 2.668212 TGGGTTTTGGAGCGCGAG 60.668 61.111 12.10 0.00 0.00 5.03
4103 4879 4.808414 TCCTTCCACTGACTGATGTAAG 57.192 45.455 0.00 0.00 0.00 2.34
4179 4955 1.967779 TCGGAGTGATCCAGTTTGACA 59.032 47.619 0.00 0.00 0.00 3.58
4183 4959 4.382040 CGGAGTGATCCAGTTTGACATAGT 60.382 45.833 0.00 0.00 0.00 2.12
4207 4983 6.747414 ATAGCACAGGATAGGTGTTGATTA 57.253 37.500 0.00 0.00 38.51 1.75
4273 5049 6.606234 TTGCTCGTGTCACAAAAATTACTA 57.394 33.333 3.42 0.00 0.00 1.82
4315 5091 4.244862 GTGTTTTATGTGATTGGCTTGGG 58.755 43.478 0.00 0.00 0.00 4.12
4328 5104 2.292389 TGGCTTGGGTTGGATTCATGAT 60.292 45.455 0.00 0.00 0.00 2.45
4371 5147 2.821378 TCACCAGTGCATTCTTTCATGG 59.179 45.455 0.00 0.00 0.00 3.66
4374 5150 4.641541 CACCAGTGCATTCTTTCATGGATA 59.358 41.667 0.00 0.00 0.00 2.59
4390 5166 7.392766 TCATGGATACCAAATCCTACATCTT 57.607 36.000 5.67 0.00 36.95 2.40
4391 5167 7.226441 TCATGGATACCAAATCCTACATCTTG 58.774 38.462 5.67 0.00 36.95 3.02
4392 5168 5.376625 TGGATACCAAATCCTACATCTTGC 58.623 41.667 5.67 0.00 38.95 4.01
4457 5234 8.172352 AGTACTCATACTCAGTGCCTATTTAG 57.828 38.462 0.00 0.00 36.97 1.85
4470 5247 8.892723 CAGTGCCTATTTAGAACACAATGATTA 58.107 33.333 11.05 0.00 34.61 1.75
4492 5269 1.545582 ACAGGAACCAATGCAATTCCG 59.454 47.619 13.59 11.65 45.54 4.30
4534 5311 1.203505 TCCCAGATCCCAAGGTGGTAA 60.204 52.381 0.00 0.00 35.17 2.85
4536 5313 2.244769 CCCAGATCCCAAGGTGGTAATT 59.755 50.000 0.00 0.00 35.17 1.40
4537 5314 3.555966 CCAGATCCCAAGGTGGTAATTC 58.444 50.000 0.00 0.00 35.17 2.17
4558 5335 2.626743 CCCCTCTGCAATGAAATGGATC 59.373 50.000 0.00 0.00 0.00 3.36
4567 5344 4.550831 GCAATGAAATGGATCGACACGTAG 60.551 45.833 0.00 0.00 0.00 3.51
4569 5346 4.968812 TGAAATGGATCGACACGTAGTA 57.031 40.909 0.00 0.00 41.61 1.82
4586 5363 7.389607 ACACGTAGTATTCCCCATATTTTATGC 59.610 37.037 0.00 0.00 41.61 3.14
4591 5368 7.177878 AGTATTCCCCATATTTTATGCTCCTG 58.822 38.462 0.00 0.00 0.00 3.86
4602 5382 2.124024 GCTCCTGGCATGGCATGA 60.124 61.111 30.69 23.03 41.35 3.07
4603 5383 1.530891 GCTCCTGGCATGGCATGAT 60.531 57.895 30.69 0.00 41.35 2.45
4604 5384 1.806461 GCTCCTGGCATGGCATGATG 61.806 60.000 30.69 17.83 41.35 3.07
4678 5500 2.203351 GGCCCGGTCATCCATTCC 60.203 66.667 0.00 0.00 0.00 3.01
4797 5620 3.059352 CAGGCTTGCAACCTACTAAGT 57.941 47.619 16.88 0.00 35.10 2.24
4798 5621 4.202245 CAGGCTTGCAACCTACTAAGTA 57.798 45.455 16.88 0.00 35.10 2.24
4831 5654 3.214328 TGTTGCTGTTTTCTTCTCTCCC 58.786 45.455 0.00 0.00 0.00 4.30
4837 5660 1.740025 GTTTTCTTCTCTCCCATGCCG 59.260 52.381 0.00 0.00 0.00 5.69
4844 5667 3.238788 TCTCTCCCATGCCGAAGTATA 57.761 47.619 0.00 0.00 0.00 1.47
4845 5668 3.157881 TCTCTCCCATGCCGAAGTATAG 58.842 50.000 0.00 0.00 0.00 1.31
4846 5669 1.618837 TCTCCCATGCCGAAGTATAGC 59.381 52.381 0.00 0.00 0.00 2.97
4847 5670 1.620819 CTCCCATGCCGAAGTATAGCT 59.379 52.381 0.00 0.00 0.00 3.32
4848 5671 2.826128 CTCCCATGCCGAAGTATAGCTA 59.174 50.000 0.00 0.00 0.00 3.32
4892 5720 9.139174 CACATTCCTTTTGTTAACATGATAACC 57.861 33.333 19.60 6.06 35.38 2.85
4893 5721 8.026607 ACATTCCTTTTGTTAACATGATAACCG 58.973 33.333 19.60 8.31 35.38 4.44
4904 5732 5.888982 ACATGATAACCGGTCCTTAATCT 57.111 39.130 8.04 0.00 0.00 2.40
4945 5773 1.047801 AATCAGCAACAACCCCAACC 58.952 50.000 0.00 0.00 0.00 3.77
4949 5777 1.142965 GCAACAACCCCAACCACAC 59.857 57.895 0.00 0.00 0.00 3.82
4960 5788 2.487086 CCCAACCACACTCACTCATCAA 60.487 50.000 0.00 0.00 0.00 2.57
4974 5802 8.316946 ACTCACTCATCAAATCTGTCAAATAGA 58.683 33.333 0.00 0.00 0.00 1.98
4977 5805 9.159364 CACTCATCAAATCTGTCAAATAGAAGA 57.841 33.333 0.00 0.00 0.00 2.87
4995 5823 6.889301 AGAAGAATGTCAATGTGAACATGT 57.111 33.333 0.00 0.00 36.56 3.21
4996 5824 6.675026 AGAAGAATGTCAATGTGAACATGTG 58.325 36.000 0.00 0.00 36.56 3.21
5001 5829 5.588958 TGTCAATGTGAACATGTGGAAAA 57.411 34.783 0.00 0.00 36.56 2.29
5003 5831 6.580788 TGTCAATGTGAACATGTGGAAAATT 58.419 32.000 0.00 0.00 36.56 1.82
5009 5837 2.857186 ACATGTGGAAAATTTGCCCC 57.143 45.000 13.00 1.15 0.00 5.80
5025 5853 1.852942 CCCCGATACAAGATCACGTG 58.147 55.000 9.94 9.94 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.254795 CCACTAGACTTTTCAACTACAACCAAG 60.255 40.741 0.00 0.00 0.00 3.61
1 2 6.540914 CCACTAGACTTTTCAACTACAACCAA 59.459 38.462 0.00 0.00 0.00 3.67
2 3 6.053005 CCACTAGACTTTTCAACTACAACCA 58.947 40.000 0.00 0.00 0.00 3.67
3 4 6.053650 ACCACTAGACTTTTCAACTACAACC 58.946 40.000 0.00 0.00 0.00 3.77
4 5 7.065443 ACAACCACTAGACTTTTCAACTACAAC 59.935 37.037 0.00 0.00 0.00 3.32
5 6 7.065324 CACAACCACTAGACTTTTCAACTACAA 59.935 37.037 0.00 0.00 0.00 2.41
6 7 6.537301 CACAACCACTAGACTTTTCAACTACA 59.463 38.462 0.00 0.00 0.00 2.74
7 8 6.759827 TCACAACCACTAGACTTTTCAACTAC 59.240 38.462 0.00 0.00 0.00 2.73
8 9 6.880484 TCACAACCACTAGACTTTTCAACTA 58.120 36.000 0.00 0.00 0.00 2.24
9 10 5.741011 TCACAACCACTAGACTTTTCAACT 58.259 37.500 0.00 0.00 0.00 3.16
10 11 6.431198 TTCACAACCACTAGACTTTTCAAC 57.569 37.500 0.00 0.00 0.00 3.18
11 12 6.657541 AGTTTCACAACCACTAGACTTTTCAA 59.342 34.615 0.00 0.00 32.70 2.69
12 13 6.177610 AGTTTCACAACCACTAGACTTTTCA 58.822 36.000 0.00 0.00 32.70 2.69
13 14 6.679327 AGTTTCACAACCACTAGACTTTTC 57.321 37.500 0.00 0.00 32.70 2.29
14 15 7.773690 ACATAGTTTCACAACCACTAGACTTTT 59.226 33.333 0.00 0.00 32.70 2.27
15 16 7.226720 CACATAGTTTCACAACCACTAGACTTT 59.773 37.037 0.00 0.00 32.70 2.66
16 17 6.706270 CACATAGTTTCACAACCACTAGACTT 59.294 38.462 0.00 0.00 32.70 3.01
17 18 6.183360 ACACATAGTTTCACAACCACTAGACT 60.183 38.462 0.00 0.00 32.70 3.24
18 19 5.989777 ACACATAGTTTCACAACCACTAGAC 59.010 40.000 0.00 0.00 32.70 2.59
19 20 6.169557 ACACATAGTTTCACAACCACTAGA 57.830 37.500 0.00 0.00 32.70 2.43
20 21 6.861065 AACACATAGTTTCACAACCACTAG 57.139 37.500 0.00 0.00 37.03 2.57
33 34 8.314751 AGTAGTTCAGATAGCAAACACATAGTT 58.685 33.333 0.00 0.00 43.89 2.24
34 35 7.841956 AGTAGTTCAGATAGCAAACACATAGT 58.158 34.615 0.00 0.00 0.00 2.12
35 36 7.436673 GGAGTAGTTCAGATAGCAAACACATAG 59.563 40.741 0.00 0.00 0.00 2.23
36 37 7.265673 GGAGTAGTTCAGATAGCAAACACATA 58.734 38.462 0.00 0.00 0.00 2.29
37 38 6.109359 GGAGTAGTTCAGATAGCAAACACAT 58.891 40.000 0.00 0.00 0.00 3.21
38 39 5.479306 GGAGTAGTTCAGATAGCAAACACA 58.521 41.667 0.00 0.00 0.00 3.72
39 40 4.870991 GGGAGTAGTTCAGATAGCAAACAC 59.129 45.833 0.00 0.00 0.00 3.32
40 41 4.777896 AGGGAGTAGTTCAGATAGCAAACA 59.222 41.667 0.00 0.00 0.00 2.83
41 42 5.346181 AGGGAGTAGTTCAGATAGCAAAC 57.654 43.478 0.00 0.00 0.00 2.93
42 43 4.406003 GGAGGGAGTAGTTCAGATAGCAAA 59.594 45.833 0.00 0.00 0.00 3.68
43 44 3.961408 GGAGGGAGTAGTTCAGATAGCAA 59.039 47.826 0.00 0.00 0.00 3.91
44 45 3.567397 GGAGGGAGTAGTTCAGATAGCA 58.433 50.000 0.00 0.00 0.00 3.49
45 46 2.554893 CGGAGGGAGTAGTTCAGATAGC 59.445 54.545 0.00 0.00 0.00 2.97
46 47 3.822940 ACGGAGGGAGTAGTTCAGATAG 58.177 50.000 0.00 0.00 0.00 2.08
47 48 3.947612 ACGGAGGGAGTAGTTCAGATA 57.052 47.619 0.00 0.00 0.00 1.98
48 49 2.830651 ACGGAGGGAGTAGTTCAGAT 57.169 50.000 0.00 0.00 0.00 2.90
49 50 2.444421 GAACGGAGGGAGTAGTTCAGA 58.556 52.381 2.75 0.00 41.66 3.27
50 51 1.132643 CGAACGGAGGGAGTAGTTCAG 59.867 57.143 7.74 0.00 42.01 3.02
51 52 1.171308 CGAACGGAGGGAGTAGTTCA 58.829 55.000 7.74 0.00 42.01 3.18
52 53 0.455005 CCGAACGGAGGGAGTAGTTC 59.545 60.000 7.53 0.00 39.46 3.01
53 54 0.038744 TCCGAACGGAGGGAGTAGTT 59.961 55.000 12.04 0.00 39.76 2.24
54 55 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
55 56 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
56 57 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
57 58 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
58 59 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
59 60 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
60 61 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
61 62 4.189231 AGACAAATAATTCCGAACGGAGG 58.811 43.478 15.34 4.52 46.06 4.30
62 63 4.026804 CGAGACAAATAATTCCGAACGGAG 60.027 45.833 15.34 5.60 46.06 4.63
63 64 3.861113 CGAGACAAATAATTCCGAACGGA 59.139 43.478 12.04 12.04 43.52 4.69
64 65 3.000925 CCGAGACAAATAATTCCGAACGG 59.999 47.826 6.94 6.94 0.00 4.44
65 66 3.861113 TCCGAGACAAATAATTCCGAACG 59.139 43.478 0.00 0.00 0.00 3.95
66 67 5.789710 TTCCGAGACAAATAATTCCGAAC 57.210 39.130 0.00 0.00 0.00 3.95
67 68 6.183360 CCATTTCCGAGACAAATAATTCCGAA 60.183 38.462 0.00 0.00 0.00 4.30
68 69 5.295787 CCATTTCCGAGACAAATAATTCCGA 59.704 40.000 0.00 0.00 0.00 4.55
69 70 5.295787 TCCATTTCCGAGACAAATAATTCCG 59.704 40.000 0.00 0.00 0.00 4.30
70 71 6.693315 TCCATTTCCGAGACAAATAATTCC 57.307 37.500 0.00 0.00 0.00 3.01
71 72 7.707104 ACATCCATTTCCGAGACAAATAATTC 58.293 34.615 0.00 0.00 0.00 2.17
72 73 7.645058 ACATCCATTTCCGAGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
73 74 8.924511 ATACATCCATTTCCGAGACAAATAAT 57.075 30.769 0.00 0.00 0.00 1.28
74 75 8.210946 AGATACATCCATTTCCGAGACAAATAA 58.789 33.333 0.00 0.00 0.00 1.40
75 76 7.735917 AGATACATCCATTTCCGAGACAAATA 58.264 34.615 0.00 0.00 0.00 1.40
76 77 6.595682 AGATACATCCATTTCCGAGACAAAT 58.404 36.000 0.00 0.00 0.00 2.32
77 78 5.989477 AGATACATCCATTTCCGAGACAAA 58.011 37.500 0.00 0.00 0.00 2.83
78 79 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
79 80 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
80 81 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
81 82 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
82 83 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
83 84 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
84 85 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
108 109 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
109 110 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
110 111 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
111 112 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
112 113 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
113 114 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
114 115 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
115 116 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
116 117 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
117 118 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
118 119 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
119 120 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
120 121 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
121 122 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
122 123 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
123 124 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
124 125 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
125 126 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
126 127 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
127 128 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
128 129 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
129 130 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
130 131 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
131 132 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
132 133 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
133 134 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
134 135 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
135 136 2.598589 TCCGTTCGGAATTACTTGTCG 58.401 47.619 11.66 0.00 0.00 4.35
136 137 3.308866 CCATCCGTTCGGAATTACTTGTC 59.691 47.826 17.72 0.00 37.88 3.18
137 138 3.055675 TCCATCCGTTCGGAATTACTTGT 60.056 43.478 17.72 0.00 37.88 3.16
138 139 3.527533 TCCATCCGTTCGGAATTACTTG 58.472 45.455 17.72 10.09 37.88 3.16
139 140 3.197116 ACTCCATCCGTTCGGAATTACTT 59.803 43.478 17.72 0.00 37.88 2.24
140 141 2.764572 ACTCCATCCGTTCGGAATTACT 59.235 45.455 17.72 0.00 37.88 2.24
141 142 3.175109 ACTCCATCCGTTCGGAATTAC 57.825 47.619 17.72 0.00 37.88 1.89
142 143 4.342951 ACATACTCCATCCGTTCGGAATTA 59.657 41.667 17.72 5.51 37.88 1.40
143 144 3.134081 ACATACTCCATCCGTTCGGAATT 59.866 43.478 17.72 0.00 37.88 2.17
144 145 2.698797 ACATACTCCATCCGTTCGGAAT 59.301 45.455 17.72 3.28 37.88 3.01
145 146 2.104967 ACATACTCCATCCGTTCGGAA 58.895 47.619 17.72 0.87 37.88 4.30
146 147 1.407618 CACATACTCCATCCGTTCGGA 59.592 52.381 16.22 16.22 38.82 4.55
147 148 1.136305 ACACATACTCCATCCGTTCGG 59.864 52.381 4.74 4.74 0.00 4.30
148 149 2.579207 ACACATACTCCATCCGTTCG 57.421 50.000 0.00 0.00 0.00 3.95
149 150 3.181510 GCAAACACATACTCCATCCGTTC 60.182 47.826 0.00 0.00 0.00 3.95
150 151 2.747446 GCAAACACATACTCCATCCGTT 59.253 45.455 0.00 0.00 0.00 4.44
151 152 2.027192 AGCAAACACATACTCCATCCGT 60.027 45.455 0.00 0.00 0.00 4.69
152 153 2.632377 AGCAAACACATACTCCATCCG 58.368 47.619 0.00 0.00 0.00 4.18
153 154 6.095440 ACAAATAGCAAACACATACTCCATCC 59.905 38.462 0.00 0.00 0.00 3.51
154 155 6.968904 CACAAATAGCAAACACATACTCCATC 59.031 38.462 0.00 0.00 0.00 3.51
155 156 6.658816 TCACAAATAGCAAACACATACTCCAT 59.341 34.615 0.00 0.00 0.00 3.41
156 157 6.000840 TCACAAATAGCAAACACATACTCCA 58.999 36.000 0.00 0.00 0.00 3.86
157 158 6.494893 TCACAAATAGCAAACACATACTCC 57.505 37.500 0.00 0.00 0.00 3.85
158 159 8.076178 AGTTTCACAAATAGCAAACACATACTC 58.924 33.333 0.00 0.00 32.20 2.59
159 160 7.940850 AGTTTCACAAATAGCAAACACATACT 58.059 30.769 0.00 0.00 32.20 2.12
160 161 7.326063 GGAGTTTCACAAATAGCAAACACATAC 59.674 37.037 0.00 0.00 32.20 2.39
232 253 5.580691 CACATACACATGTCATACGGAGTTT 59.419 40.000 0.00 0.00 43.73 2.66
350 397 2.434702 CGGTAGGGTCTTGCCTATTTCT 59.565 50.000 0.00 0.00 37.43 2.52
381 428 2.972713 GGCTATCTGATCCTACCACCAA 59.027 50.000 0.00 0.00 0.00 3.67
415 462 0.763035 GGGTCAACCTACCGCCATAT 59.237 55.000 0.00 0.00 40.73 1.78
476 523 2.663852 CGCGTGGGTTTTCGAGGT 60.664 61.111 0.00 0.00 0.00 3.85
577 1005 2.351706 TTTGACCCTTTTGCTACCGT 57.648 45.000 0.00 0.00 0.00 4.83
620 1048 6.953520 ACCCTTTGATACAAATTCAGGATCAA 59.046 34.615 12.21 12.21 35.33 2.57
670 1103 4.098055 TCTTGCGATGTTCAGACTACTC 57.902 45.455 0.00 0.00 0.00 2.59
723 1161 4.809815 TTAACGGTAAAACCAACGGAAG 57.190 40.909 0.00 0.00 38.47 3.46
831 1269 3.399181 GTGGGATGGCTGGACGGA 61.399 66.667 0.00 0.00 0.00 4.69
941 1379 0.536460 TTCCTGTGGGGCGAAAGTTC 60.536 55.000 0.00 0.00 34.39 3.01
943 1381 0.322546 GATTCCTGTGGGGCGAAAGT 60.323 55.000 0.00 0.00 34.39 2.66
945 1383 1.376683 CGATTCCTGTGGGGCGAAA 60.377 57.895 0.00 0.00 34.39 3.46
946 1384 1.622607 ATCGATTCCTGTGGGGCGAA 61.623 55.000 0.00 0.00 35.83 4.70
947 1385 1.622607 AATCGATTCCTGTGGGGCGA 61.623 55.000 4.39 0.00 36.30 5.54
948 1386 1.153168 AATCGATTCCTGTGGGGCG 60.153 57.895 4.39 0.00 34.39 6.13
949 1387 2.707902 GAATCGATTCCTGTGGGGC 58.292 57.895 24.74 0.00 34.39 5.80
958 1396 2.649257 CGCTCGCCGGAATCGATTC 61.649 63.158 26.64 26.64 39.00 2.52
959 1397 2.658593 CGCTCGCCGGAATCGATT 60.659 61.111 11.20 11.20 39.00 3.34
960 1398 3.544167 CTCGCTCGCCGGAATCGAT 62.544 63.158 5.05 0.00 39.00 3.59
1084 1522 3.977568 GAGCACGCGAGCGCATAC 61.978 66.667 25.13 11.13 42.75 2.39
1163 1601 1.825474 TGAAACAAAGCACCGGGAAAA 59.175 42.857 6.32 0.00 0.00 2.29
1301 1752 8.203937 TGTTGTAAGTACAATTGGATATTCCG 57.796 34.615 10.83 0.00 46.56 4.30
1355 1813 2.479049 GCATCTACGCAGAAGTAACCGA 60.479 50.000 0.00 0.00 33.50 4.69
1359 1817 4.745125 GCATAAGCATCTACGCAGAAGTAA 59.255 41.667 0.00 0.00 41.58 2.24
1367 1825 2.866156 TGTTCAGCATAAGCATCTACGC 59.134 45.455 0.00 0.00 45.49 4.42
1374 1832 4.081406 ACCTTGATTGTTCAGCATAAGCA 58.919 39.130 0.00 0.00 45.49 3.91
1483 1941 2.949714 CAACGCGTTGACAGAAAGAT 57.050 45.000 41.29 5.92 42.93 2.40
1499 1959 4.514066 ACGAGGGTTTAATCACTGAACAAC 59.486 41.667 0.00 0.00 0.00 3.32
1519 1979 7.681304 GCATAGAGCGATATTTATTCCCTACGA 60.681 40.741 0.00 0.00 0.00 3.43
1590 2052 0.588252 CTCCAAGTTCTGCAACCACG 59.412 55.000 0.00 0.00 32.22 4.94
1611 2073 0.671781 ACAGCTCCACGACATTCAGC 60.672 55.000 0.00 0.00 0.00 4.26
1709 2171 0.109597 CGCACAGCAGGGAACAAATC 60.110 55.000 0.00 0.00 0.00 2.17
1722 2184 0.232303 GTCGAACTTCAACCGCACAG 59.768 55.000 0.00 0.00 0.00 3.66
1850 2323 1.135402 GTATTGAACAGGCAAAGGCGG 60.135 52.381 0.00 0.00 42.47 6.13
2130 2858 2.191802 CGTCATCATCTCTGACAGCAC 58.808 52.381 0.00 0.00 42.52 4.40
2144 2872 6.718454 AGAAGCATATGATTAAGCGTCATC 57.282 37.500 6.12 0.00 37.48 2.92
2255 2987 5.697633 GTCCAAAACTCGGTAGTCATACAAA 59.302 40.000 0.00 0.00 33.75 2.83
2263 2995 1.346722 CCTGGTCCAAAACTCGGTAGT 59.653 52.381 0.00 0.00 37.65 2.73
2267 2999 0.179001 AACCCTGGTCCAAAACTCGG 60.179 55.000 0.00 0.00 0.00 4.63
2470 3204 4.842531 TTGTCTGGAATAGAATGAGCCA 57.157 40.909 0.00 0.00 37.12 4.75
2503 3240 1.755783 GATTTGCCCCCAGCCTCAG 60.756 63.158 0.00 0.00 42.71 3.35
2504 3241 2.360191 GATTTGCCCCCAGCCTCA 59.640 61.111 0.00 0.00 42.71 3.86
2506 3243 1.803453 TTCTGATTTGCCCCCAGCCT 61.803 55.000 0.00 0.00 42.71 4.58
2507 3244 0.904394 TTTCTGATTTGCCCCCAGCC 60.904 55.000 0.00 0.00 42.71 4.85
2508 3245 0.533951 CTTTCTGATTTGCCCCCAGC 59.466 55.000 0.00 0.00 44.14 4.85
2530 3267 8.707839 TGTTTCAAAGCAAAACTAGTTCAAAAG 58.292 29.630 8.95 0.00 37.48 2.27
2594 3333 2.094026 GCACAAAGGCCTGGGATTTAAG 60.094 50.000 5.69 0.00 0.00 1.85
2601 3342 0.320946 CAAATGCACAAAGGCCTGGG 60.321 55.000 5.69 3.69 0.00 4.45
2757 3498 7.290857 ACGTAATAATGTTTACTCAGCTGTG 57.709 36.000 14.67 14.35 31.28 3.66
2806 3547 6.440010 AGTGATTCTCTCAAGAAAGATCCAGA 59.560 38.462 0.00 0.00 44.49 3.86
2902 3649 0.179129 GCATGCCACCATAGTTGCAC 60.179 55.000 6.36 0.00 46.34 4.57
2994 3745 9.308318 GAAGACAAATCCAGTCTAGAAAGTATC 57.692 37.037 0.00 0.00 45.11 2.24
3003 3755 6.017192 ACTGTAGGAAGACAAATCCAGTCTA 58.983 40.000 0.00 0.00 45.11 2.59
3008 3760 6.361433 TGAAAACTGTAGGAAGACAAATCCA 58.639 36.000 0.00 0.00 39.55 3.41
3017 3769 7.649306 CCAAAGTTGAATGAAAACTGTAGGAAG 59.351 37.037 0.00 0.00 37.90 3.46
3033 3785 6.068010 TGAGATTAAAGCCTCCAAAGTTGAA 58.932 36.000 0.00 0.00 0.00 2.69
3082 3834 8.734386 AGGAAAAACATATCAGTGAAAGACATC 58.266 33.333 0.00 0.00 0.00 3.06
3100 3852 9.528018 TGTTGATTGATTACAAAGAGGAAAAAC 57.472 29.630 0.00 0.00 39.54 2.43
3102 3854 9.130661 TCTGTTGATTGATTACAAAGAGGAAAA 57.869 29.630 0.00 0.00 39.54 2.29
3119 3893 3.134623 TCATGGGCGTCTATCTGTTGATT 59.865 43.478 0.00 0.00 34.32 2.57
3217 3991 4.802918 GCTTGTGCCACGATATATACCCTT 60.803 45.833 0.00 0.00 0.00 3.95
3252 4027 8.506168 TGGTGGTAGAACAAAGATCAATAATC 57.494 34.615 0.00 0.00 34.30 1.75
3370 4145 4.819088 GGCCCAAATGAGAGAGAGTAAATC 59.181 45.833 0.00 0.00 0.00 2.17
3379 4154 1.377202 GCACGGCCCAAATGAGAGA 60.377 57.895 0.00 0.00 0.00 3.10
3464 4239 2.978156 AACCTTCCATTTCTGGCAGA 57.022 45.000 14.43 14.43 42.80 4.26
3496 4271 3.010027 TGGTTCAGGAATCACAATAGCCA 59.990 43.478 0.00 0.00 0.00 4.75
3527 4302 2.006888 AGCACGTCAAAATATGTCCCG 58.993 47.619 0.00 0.00 0.00 5.14
3528 4303 3.438781 TGAAGCACGTCAAAATATGTCCC 59.561 43.478 0.00 0.00 0.00 4.46
3554 4330 8.040716 AGTAATTTATTCGTTTGGTTCCTGAG 57.959 34.615 0.00 0.00 0.00 3.35
3655 4431 2.597217 TTGGTTTCTGCAGGGGCG 60.597 61.111 15.13 0.00 45.35 6.13
3678 4454 6.709846 AGACAAAGCCAGAAGATCTTATATGC 59.290 38.462 8.25 11.35 0.00 3.14
3682 4458 6.112058 GTCAGACAAAGCCAGAAGATCTTAT 58.888 40.000 8.25 1.36 0.00 1.73
3699 4475 3.803340 AGAATAGGGAAAGGGTCAGACA 58.197 45.455 2.17 0.00 0.00 3.41
3710 4486 7.931015 TTAGATTAGCAGGAAGAATAGGGAA 57.069 36.000 0.00 0.00 0.00 3.97
3711 4487 7.181125 GGATTAGATTAGCAGGAAGAATAGGGA 59.819 40.741 0.00 0.00 0.00 4.20
3714 4490 9.651913 GAAGGATTAGATTAGCAGGAAGAATAG 57.348 37.037 0.00 0.00 0.00 1.73
3715 4491 9.386122 AGAAGGATTAGATTAGCAGGAAGAATA 57.614 33.333 0.00 0.00 0.00 1.75
3716 4492 8.156165 CAGAAGGATTAGATTAGCAGGAAGAAT 58.844 37.037 0.00 0.00 0.00 2.40
3719 4495 7.060383 TCAGAAGGATTAGATTAGCAGGAAG 57.940 40.000 0.00 0.00 0.00 3.46
3721 4497 7.623999 ATTCAGAAGGATTAGATTAGCAGGA 57.376 36.000 0.00 0.00 0.00 3.86
3722 4498 7.308469 GCAATTCAGAAGGATTAGATTAGCAGG 60.308 40.741 0.00 0.00 0.00 4.85
3778 4554 5.541845 GGAAATTTGGAAGAGTTTTGGGAG 58.458 41.667 0.00 0.00 0.00 4.30
3787 4563 0.451783 CGGCCGGAAATTTGGAAGAG 59.548 55.000 20.10 0.00 0.00 2.85
3796 4572 2.046314 CACCTCACGGCCGGAAAT 60.046 61.111 31.76 4.77 0.00 2.17
3802 4578 1.087501 GAATTTCTCACCTCACGGCC 58.912 55.000 0.00 0.00 0.00 6.13
3813 4589 3.968724 GTGAAACTGCGTGTGAATTTCTC 59.031 43.478 0.00 0.00 31.86 2.87
3824 4600 2.192624 GCATTTTGTGTGAAACTGCGT 58.807 42.857 0.00 0.00 38.04 5.24
3826 4602 3.605231 GCATGCATTTTGTGTGAAACTGC 60.605 43.478 14.21 0.00 38.04 4.40
3827 4603 3.805422 AGCATGCATTTTGTGTGAAACTG 59.195 39.130 21.98 0.00 38.04 3.16
3829 4605 4.123276 CAGCATGCATTTTGTGTGAAAC 57.877 40.909 21.98 0.00 37.35 2.78
3851 4627 3.443681 ACGAACTGGAAGGCATAAAATGG 59.556 43.478 0.00 0.00 39.30 3.16
3857 4633 4.746535 TGAATACGAACTGGAAGGCATA 57.253 40.909 0.00 0.00 39.30 3.14
3888 4664 9.686683 ATAGACTACAGTCCTGCAAAAATTTAT 57.313 29.630 5.76 0.00 45.85 1.40
3998 4774 0.811616 CGGTATCCAGCAGGCTGAAC 60.812 60.000 20.86 15.50 46.30 3.18
4019 4795 8.783093 TGGTGTTCATTCTGTTTCAAAGTATAG 58.217 33.333 0.00 0.00 0.00 1.31
4026 4802 4.019858 TGGTGGTGTTCATTCTGTTTCAA 58.980 39.130 0.00 0.00 0.00 2.69
4027 4803 3.380004 GTGGTGGTGTTCATTCTGTTTCA 59.620 43.478 0.00 0.00 0.00 2.69
4069 4845 3.952628 GAAGGAACGGGGTCGGCAG 62.953 68.421 0.00 0.00 41.39 4.85
4103 4879 6.146837 GGATACACTCATCTTGCACATGATAC 59.853 42.308 0.00 0.00 29.78 2.24
4172 4948 7.815068 CCTATCCTGTGCTATACTATGTCAAAC 59.185 40.741 0.00 0.00 0.00 2.93
4179 4955 7.010771 TCAACACCTATCCTGTGCTATACTAT 58.989 38.462 0.00 0.00 37.22 2.12
4183 4959 6.747414 AATCAACACCTATCCTGTGCTATA 57.253 37.500 0.00 0.00 37.22 1.31
4207 4983 6.472686 TTTACACCCACAACATTAAGCTTT 57.527 33.333 3.20 0.00 0.00 3.51
4273 5049 2.037251 ACGCTGGAACTCATGTGTTACT 59.963 45.455 20.52 1.26 32.26 2.24
4328 5104 0.320683 CTGTCCGGAACTGCATGTCA 60.321 55.000 5.23 0.00 0.00 3.58
4371 5147 5.049129 GCAGCAAGATGTAGGATTTGGTATC 60.049 44.000 0.00 0.00 30.88 2.24
4374 5150 3.019564 GCAGCAAGATGTAGGATTTGGT 58.980 45.455 0.00 0.00 0.00 3.67
4390 5166 5.524393 AAGGATATCTTGGTGCAGCAGCA 62.524 47.826 23.43 23.43 40.68 4.41
4391 5167 0.950116 GGATATCTTGGTGCAGCAGC 59.050 55.000 19.25 18.07 42.57 5.25
4392 5168 2.617308 CAAGGATATCTTGGTGCAGCAG 59.383 50.000 19.25 13.07 46.81 4.24
4445 5222 7.944729 AATCATTGTGTTCTAAATAGGCACT 57.055 32.000 13.19 0.00 46.37 4.40
4457 5234 5.240623 TGGTTCCTGTGTAATCATTGTGTTC 59.759 40.000 0.00 0.00 0.00 3.18
4470 5247 2.299867 GGAATTGCATTGGTTCCTGTGT 59.700 45.455 11.33 0.00 38.65 3.72
4492 5269 6.014070 GGGAGTTCTCTTTTCTATCCCCTATC 60.014 46.154 0.00 0.00 39.23 2.08
4501 5278 4.717280 GGGATCTGGGAGTTCTCTTTTCTA 59.283 45.833 0.00 0.00 0.00 2.10
4510 5287 1.065126 CACCTTGGGATCTGGGAGTTC 60.065 57.143 0.00 0.00 0.00 3.01
4534 5311 3.036091 CCATTTCATTGCAGAGGGGAAT 58.964 45.455 0.00 0.00 38.16 3.01
4536 5313 1.640149 TCCATTTCATTGCAGAGGGGA 59.360 47.619 0.00 0.00 0.00 4.81
4537 5314 2.148446 TCCATTTCATTGCAGAGGGG 57.852 50.000 0.00 0.00 0.00 4.79
4558 5335 4.778534 ATATGGGGAATACTACGTGTCG 57.221 45.455 0.00 0.00 0.00 4.35
4567 5344 6.378280 CCAGGAGCATAAAATATGGGGAATAC 59.622 42.308 0.04 0.00 0.00 1.89
4568 5345 6.493166 CCAGGAGCATAAAATATGGGGAATA 58.507 40.000 0.04 0.00 0.00 1.75
4569 5346 5.336102 CCAGGAGCATAAAATATGGGGAAT 58.664 41.667 0.04 0.00 0.00 3.01
4586 5363 1.806461 GCATCATGCCATGCCAGGAG 61.806 60.000 0.00 0.00 43.03 3.69
4591 5368 4.994201 CGCGCATCATGCCATGCC 62.994 66.667 8.75 6.00 45.59 4.40
4598 5378 3.993234 GTCGGAGCGCGCATCATG 61.993 66.667 35.10 20.99 0.00 3.07
4599 5379 4.512961 TGTCGGAGCGCGCATCAT 62.513 61.111 35.10 13.12 0.00 2.45
4601 5381 2.507322 TTTTTGTCGGAGCGCGCATC 62.507 55.000 35.10 25.42 0.00 3.91
4602 5382 2.612567 TTTTTGTCGGAGCGCGCAT 61.613 52.632 35.10 18.69 0.00 4.73
4603 5383 3.273084 TTTTTGTCGGAGCGCGCA 61.273 55.556 35.10 9.85 0.00 6.09
4666 5488 2.636830 CACACTGAGGAATGGATGACC 58.363 52.381 0.00 0.00 0.00 4.02
4795 5618 8.743085 AAACAGCAACATGAAGATGATATACT 57.257 30.769 12.80 0.00 33.36 2.12
4796 5619 9.443283 GAAAACAGCAACATGAAGATGATATAC 57.557 33.333 12.80 0.27 33.36 1.47
4797 5620 9.399797 AGAAAACAGCAACATGAAGATGATATA 57.600 29.630 12.80 0.00 33.36 0.86
4798 5621 8.289939 AGAAAACAGCAACATGAAGATGATAT 57.710 30.769 12.80 0.82 33.36 1.63
4815 5638 2.751806 GGCATGGGAGAGAAGAAAACAG 59.248 50.000 0.00 0.00 0.00 3.16
4844 5667 7.544622 TGTGTCATTATCGACTTTAAGTAGCT 58.455 34.615 0.00 0.00 36.82 3.32
4845 5668 7.751047 TGTGTCATTATCGACTTTAAGTAGC 57.249 36.000 0.00 0.00 36.82 3.58
4847 5670 9.309516 GGAATGTGTCATTATCGACTTTAAGTA 57.690 33.333 0.00 0.00 36.82 2.24
4848 5671 8.041323 AGGAATGTGTCATTATCGACTTTAAGT 58.959 33.333 0.00 0.00 36.82 2.24
4863 5691 7.340122 TCATGTTAACAAAAGGAATGTGTCA 57.660 32.000 13.23 0.00 0.00 3.58
4892 5720 1.927174 CGCAGTGAAGATTAAGGACCG 59.073 52.381 0.00 0.00 0.00 4.79
4893 5721 1.666189 GCGCAGTGAAGATTAAGGACC 59.334 52.381 0.30 0.00 0.00 4.46
4904 5732 0.815213 ACTTCAAGCTGCGCAGTGAA 60.815 50.000 35.80 32.56 35.00 3.18
4920 5748 2.365293 GGGGTTGTTGCTGATTGAACTT 59.635 45.455 0.00 0.00 0.00 2.66
4945 5773 4.992951 TGACAGATTTGATGAGTGAGTGTG 59.007 41.667 0.00 0.00 0.00 3.82
4949 5777 8.713737 TCTATTTGACAGATTTGATGAGTGAG 57.286 34.615 0.00 0.00 0.00 3.51
4974 5802 5.535783 TCCACATGTTCACATTGACATTCTT 59.464 36.000 0.00 0.00 33.61 2.52
4977 5805 5.787953 TTCCACATGTTCACATTGACATT 57.212 34.783 0.00 0.00 33.61 2.71
4980 5808 7.346695 CAAATTTTCCACATGTTCACATTGAC 58.653 34.615 0.00 0.00 33.61 3.18
4995 5823 2.808919 TGTATCGGGGCAAATTTTCCA 58.191 42.857 9.16 0.00 0.00 3.53
4996 5824 3.445805 TCTTGTATCGGGGCAAATTTTCC 59.554 43.478 0.00 0.00 0.00 3.13
5001 5829 3.214328 GTGATCTTGTATCGGGGCAAAT 58.786 45.455 0.00 0.00 0.00 2.32
5003 5831 1.472552 CGTGATCTTGTATCGGGGCAA 60.473 52.381 0.00 0.00 0.00 4.52
5009 5837 2.193447 CCCACACGTGATCTTGTATCG 58.807 52.381 25.01 0.00 0.00 2.92
5025 5853 1.890489 GGTACCAACATTTCACCCCAC 59.110 52.381 7.15 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.