Multiple sequence alignment - TraesCS6B01G385900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G385900 chr6B 100.000 2653 0 0 665 3317 660564723 660562071 0.000000e+00 4900
1 TraesCS6B01G385900 chr6B 100.000 386 0 0 1 386 660565387 660565002 0.000000e+00 713
2 TraesCS6B01G385900 chr6D 90.806 2741 99 53 665 3305 436832071 436834758 0.000000e+00 3524
3 TraesCS6B01G385900 chr6D 89.974 379 13 8 12 376 436831385 436831752 1.800000e-127 466
4 TraesCS6B01G385900 chr6A 89.564 2750 104 63 665 3300 585108245 585110925 0.000000e+00 3319
5 TraesCS6B01G385900 chr6A 87.212 391 19 11 12 386 585107845 585108220 1.840000e-112 416
6 TraesCS6B01G385900 chr7D 86.977 1290 165 2 1012 2301 101783170 101781884 0.000000e+00 1448
7 TraesCS6B01G385900 chr7A 86.987 1291 163 4 1012 2301 105641655 105640369 0.000000e+00 1448
8 TraesCS6B01G385900 chr7A 78.880 1018 190 23 1277 2278 245595336 245596344 0.000000e+00 665
9 TraesCS6B01G385900 chr7B 86.367 1291 173 2 1012 2302 59100888 59099601 0.000000e+00 1406
10 TraesCS6B01G385900 chr5B 80.522 996 151 33 1277 2253 466333670 466332699 0.000000e+00 725
11 TraesCS6B01G385900 chr5D 80.530 981 153 28 1289 2253 387728912 387727954 0.000000e+00 719
12 TraesCS6B01G385900 chr5A 80.225 976 153 31 1295 2253 490816292 490815340 0.000000e+00 697


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G385900 chr6B 660562071 660565387 3316 True 2806.5 4900 100.000 1 3317 2 chr6B.!!$R1 3316
1 TraesCS6B01G385900 chr6D 436831385 436834758 3373 False 1995.0 3524 90.390 12 3305 2 chr6D.!!$F1 3293
2 TraesCS6B01G385900 chr6A 585107845 585110925 3080 False 1867.5 3319 88.388 12 3300 2 chr6A.!!$F1 3288
3 TraesCS6B01G385900 chr7D 101781884 101783170 1286 True 1448.0 1448 86.977 1012 2301 1 chr7D.!!$R1 1289
4 TraesCS6B01G385900 chr7A 105640369 105641655 1286 True 1448.0 1448 86.987 1012 2301 1 chr7A.!!$R1 1289
5 TraesCS6B01G385900 chr7A 245595336 245596344 1008 False 665.0 665 78.880 1277 2278 1 chr7A.!!$F1 1001
6 TraesCS6B01G385900 chr7B 59099601 59100888 1287 True 1406.0 1406 86.367 1012 2302 1 chr7B.!!$R1 1290
7 TraesCS6B01G385900 chr5B 466332699 466333670 971 True 725.0 725 80.522 1277 2253 1 chr5B.!!$R1 976
8 TraesCS6B01G385900 chr5D 387727954 387728912 958 True 719.0 719 80.530 1289 2253 1 chr5D.!!$R1 964
9 TraesCS6B01G385900 chr5A 490815340 490816292 952 True 697.0 697 80.225 1295 2253 1 chr5A.!!$R1 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1004 0.322546 GGCGTGAGGGATTCTTGGTT 60.323 55.000 0.0 0.0 0.0 3.67 F
949 1025 2.813754 TCTTGGTTTCTTGATCGGCTTG 59.186 45.455 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2009 0.599558 CGAGGTCCACGTGGTTCTTA 59.400 55.000 32.74 11.90 36.34 2.10 R
2531 2657 1.134189 GGAAAGAATTCGGTCCGGGAT 60.134 52.381 12.29 3.25 36.36 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.774799 GGCATCGCATTCACACCCC 61.775 63.158 0.00 0.00 0.00 4.95
84 85 3.101209 CATCGCATTCACACCCCG 58.899 61.111 0.00 0.00 0.00 5.73
85 86 1.449423 CATCGCATTCACACCCCGA 60.449 57.895 0.00 0.00 0.00 5.14
109 110 3.566523 ACGCGTGAAAAGTGAAAACAAA 58.433 36.364 12.93 0.00 0.00 2.83
111 123 3.362237 CGCGTGAAAAGTGAAAACAAACA 59.638 39.130 0.00 0.00 0.00 2.83
117 129 1.264672 AGTGAAAACAAACAACGCGC 58.735 45.000 5.73 0.00 0.00 6.86
120 132 2.028643 GTGAAAACAAACAACGCGCAAT 59.971 40.909 5.73 0.00 0.00 3.56
140 152 2.584418 CAGCCCGTGATGAGCGAG 60.584 66.667 0.00 0.00 0.00 5.03
161 173 4.625028 AGGAGTAATAATAAACCCGCGTC 58.375 43.478 4.92 0.00 0.00 5.19
201 213 3.834231 ACCGCCAGGAAACTAAACTACTA 59.166 43.478 0.00 0.00 40.21 1.82
202 214 4.179298 CCGCCAGGAAACTAAACTACTAC 58.821 47.826 0.00 0.00 40.21 2.73
203 215 4.081807 CCGCCAGGAAACTAAACTACTACT 60.082 45.833 0.00 0.00 40.21 2.57
297 323 1.309499 CGACCCCAAAAATAGCCGCA 61.309 55.000 0.00 0.00 0.00 5.69
310 336 2.124570 CCGCACAATCCTCCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
711 772 1.427753 TCCCACTTTCCCTTTCTTCCC 59.572 52.381 0.00 0.00 0.00 3.97
712 773 1.550179 CCCACTTTCCCTTTCTTCCCC 60.550 57.143 0.00 0.00 0.00 4.81
713 774 1.550179 CCACTTTCCCTTTCTTCCCCC 60.550 57.143 0.00 0.00 0.00 5.40
758 819 1.305930 GCGCAAATTCCTTCCGTCCT 61.306 55.000 0.30 0.00 0.00 3.85
814 875 3.760035 CCAGGAGTCCACCCGTCG 61.760 72.222 12.86 0.00 0.00 5.12
906 971 3.148279 CGTCCGGGAGAAGGAGGG 61.148 72.222 0.00 0.00 39.30 4.30
907 972 2.764547 GTCCGGGAGAAGGAGGGG 60.765 72.222 0.00 0.00 38.65 4.79
908 973 4.798682 TCCGGGAGAAGGAGGGGC 62.799 72.222 0.00 0.00 33.19 5.80
935 1004 0.322546 GGCGTGAGGGATTCTTGGTT 60.323 55.000 0.00 0.00 0.00 3.67
940 1009 3.189287 CGTGAGGGATTCTTGGTTTCTTG 59.811 47.826 0.00 0.00 0.00 3.02
941 1010 4.398319 GTGAGGGATTCTTGGTTTCTTGA 58.602 43.478 0.00 0.00 0.00 3.02
943 1012 5.124617 GTGAGGGATTCTTGGTTTCTTGATC 59.875 44.000 0.00 0.00 0.00 2.92
949 1025 2.813754 TCTTGGTTTCTTGATCGGCTTG 59.186 45.455 0.00 0.00 0.00 4.01
1107 1190 3.843240 CGCTGCTTCGCTTCGACC 61.843 66.667 0.00 0.00 34.89 4.79
2345 2447 3.573491 CGCCGCCGGAATTCTTCC 61.573 66.667 7.68 0.00 46.62 3.46
2443 2566 1.367471 GATGGATGGATCGTCGCCA 59.633 57.895 0.00 0.00 40.24 5.69
2445 2568 0.250038 ATGGATGGATCGTCGCCAAG 60.250 55.000 0.00 0.00 39.21 3.61
2453 2576 0.650512 ATCGTCGCCAAGCATTAACG 59.349 50.000 0.00 0.00 0.00 3.18
2478 2601 6.145535 GCATTCTTGTCTCGATTCTTTTTGT 58.854 36.000 0.00 0.00 0.00 2.83
2481 2604 4.515191 TCTTGTCTCGATTCTTTTTGTGGG 59.485 41.667 0.00 0.00 0.00 4.61
2485 2611 5.048782 TGTCTCGATTCTTTTTGTGGGAATG 60.049 40.000 0.00 0.00 30.98 2.67
2486 2612 4.082787 TCTCGATTCTTTTTGTGGGAATGC 60.083 41.667 0.00 0.00 30.98 3.56
2487 2613 3.826157 TCGATTCTTTTTGTGGGAATGCT 59.174 39.130 0.00 0.00 30.98 3.79
2516 2642 3.981071 TGGTGTTCTCCGATCAAGAAT 57.019 42.857 9.94 0.00 35.35 2.40
2528 2654 9.565090 TCTCCGATCAAGAATATGAAAATCAAT 57.435 29.630 0.00 0.00 32.06 2.57
2529 2655 9.823098 CTCCGATCAAGAATATGAAAATCAATC 57.177 33.333 0.00 0.00 32.06 2.67
2530 2656 9.341078 TCCGATCAAGAATATGAAAATCAATCA 57.659 29.630 0.00 0.00 32.06 2.57
2531 2657 9.955208 CCGATCAAGAATATGAAAATCAATCAA 57.045 29.630 0.00 0.00 32.06 2.57
2539 2665 4.981806 TGAAAATCAATCAATCCCGGAC 57.018 40.909 0.73 0.00 0.00 4.79
2614 2740 7.084486 AGCGAAACCTTTTCTCATTGTTTATC 58.916 34.615 0.00 0.00 29.89 1.75
2615 2741 6.861055 GCGAAACCTTTTCTCATTGTTTATCA 59.139 34.615 0.00 0.00 29.89 2.15
2617 2743 9.410556 CGAAACCTTTTCTCATTGTTTATCATT 57.589 29.630 0.00 0.00 29.89 2.57
2622 2748 9.158233 CCTTTTCTCATTGTTTATCATTGCATT 57.842 29.630 0.00 0.00 0.00 3.56
2649 2775 7.628501 TTTATCTATTCTCTTTACCCTCCCC 57.371 40.000 0.00 0.00 0.00 4.81
2651 2777 5.236425 TCTATTCTCTTTACCCTCCCCTT 57.764 43.478 0.00 0.00 0.00 3.95
2652 2778 5.217400 TCTATTCTCTTTACCCTCCCCTTC 58.783 45.833 0.00 0.00 0.00 3.46
2654 2780 3.579742 TCTCTTTACCCTCCCCTTCTT 57.420 47.619 0.00 0.00 0.00 2.52
2655 2781 3.451890 TCTCTTTACCCTCCCCTTCTTC 58.548 50.000 0.00 0.00 0.00 2.87
2668 2794 4.844085 TCCCCTTCTTCATCTGTAAAGACA 59.156 41.667 0.00 0.00 31.46 3.41
2669 2795 5.309543 TCCCCTTCTTCATCTGTAAAGACAA 59.690 40.000 0.00 0.00 34.35 3.18
2674 2802 6.545504 TCTTCATCTGTAAAGACAAAGTGC 57.454 37.500 6.18 0.00 34.35 4.40
2676 2804 4.072131 TCATCTGTAAAGACAAAGTGCCC 58.928 43.478 0.00 0.00 34.35 5.36
2706 2834 1.081481 TTCTTCTTTTCCCCTCCCCC 58.919 55.000 0.00 0.00 0.00 5.40
2744 2873 9.171877 ACTTTTTCCAAAATTTCAATTAGTGCA 57.828 25.926 0.00 0.00 0.00 4.57
2746 2875 9.947669 TTTTTCCAAAATTTCAATTAGTGCATG 57.052 25.926 0.00 0.00 0.00 4.06
2747 2876 8.674263 TTTCCAAAATTTCAATTAGTGCATGT 57.326 26.923 0.00 0.00 0.00 3.21
2750 2879 9.941325 TCCAAAATTTCAATTAGTGCATGTTAT 57.059 25.926 0.00 0.00 0.00 1.89
2777 2932 5.099042 ACCTAACAAAATGGAGCTACGAT 57.901 39.130 0.00 0.00 0.00 3.73
2788 2943 2.823154 GGAGCTACGATCTGGCTTATCT 59.177 50.000 0.00 0.00 36.37 1.98
2807 2962 5.576447 ATCTGATCGCCCGTTTAAATTTT 57.424 34.783 0.00 0.00 0.00 1.82
2911 3103 1.382695 GGAACCATCGGGAGGAGGA 60.383 63.158 0.00 0.00 38.05 3.71
3133 3347 4.137872 CGACGCGTATGGGGTGGT 62.138 66.667 13.97 0.00 42.62 4.16
3135 3349 4.090588 ACGCGTATGGGGTGGTGG 62.091 66.667 11.67 0.00 40.78 4.61
3138 3352 4.849310 CGTATGGGGTGGTGGCGG 62.849 72.222 0.00 0.00 0.00 6.13
3139 3353 4.499633 GTATGGGGTGGTGGCGGG 62.500 72.222 0.00 0.00 0.00 6.13
3213 3430 3.641437 TGCTACGTACGTACCAAGTTT 57.359 42.857 23.60 0.00 0.00 2.66
3214 3431 3.307674 TGCTACGTACGTACCAAGTTTG 58.692 45.455 23.60 12.52 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.157523 GCGTGACGACTGACGACG 61.158 66.667 10.10 7.84 45.77 5.12
10 11 1.225745 GATTTTCTGCCGCGTGACG 60.226 57.895 4.92 0.00 43.15 4.35
83 84 1.155087 CACTTTTCACGCGTCGTCG 60.155 57.895 9.86 0.00 38.32 5.12
84 85 0.573521 TTCACTTTTCACGCGTCGTC 59.426 50.000 9.86 0.00 38.32 4.20
85 86 1.000884 TTTCACTTTTCACGCGTCGT 58.999 45.000 9.86 0.00 42.36 4.34
94 95 4.311599 CGCGTTGTTTGTTTTCACTTTTC 58.688 39.130 0.00 0.00 0.00 2.29
109 110 3.737172 GCTGGGATTGCGCGTTGT 61.737 61.111 8.43 0.00 0.00 3.32
117 129 0.816825 CTCATCACGGGCTGGGATTG 60.817 60.000 8.74 5.05 0.00 2.67
120 132 3.785859 GCTCATCACGGGCTGGGA 61.786 66.667 0.00 0.00 0.00 4.37
140 152 4.209911 GTGACGCGGGTTTATTATTACTCC 59.790 45.833 12.47 0.00 0.00 3.85
161 173 0.865769 GTATTTATCCTGGCGCGGTG 59.134 55.000 8.83 0.00 0.00 4.94
297 323 3.411517 CGGGCAGGGGAGGATTGT 61.412 66.667 0.00 0.00 0.00 2.71
690 751 2.555448 GGGAAGAAAGGGAAAGTGGGAG 60.555 54.545 0.00 0.00 0.00 4.30
711 772 4.615588 ATTTTATTGTGTTGTGTGGGGG 57.384 40.909 0.00 0.00 0.00 5.40
712 773 4.683781 CGAATTTTATTGTGTTGTGTGGGG 59.316 41.667 0.00 0.00 0.00 4.96
713 774 4.149747 GCGAATTTTATTGTGTTGTGTGGG 59.850 41.667 0.00 0.00 0.00 4.61
714 775 4.981674 AGCGAATTTTATTGTGTTGTGTGG 59.018 37.500 0.00 0.00 0.00 4.17
715 776 5.164292 CGAGCGAATTTTATTGTGTTGTGTG 60.164 40.000 0.00 0.00 0.00 3.82
716 777 4.909305 CGAGCGAATTTTATTGTGTTGTGT 59.091 37.500 0.00 0.00 0.00 3.72
717 778 4.201391 GCGAGCGAATTTTATTGTGTTGTG 60.201 41.667 0.00 0.00 0.00 3.33
718 779 3.911964 GCGAGCGAATTTTATTGTGTTGT 59.088 39.130 0.00 0.00 0.00 3.32
719 780 3.003119 CGCGAGCGAATTTTATTGTGTTG 60.003 43.478 12.58 0.00 42.83 3.33
720 781 3.160545 CGCGAGCGAATTTTATTGTGTT 58.839 40.909 12.58 0.00 42.83 3.32
721 782 2.769376 CGCGAGCGAATTTTATTGTGT 58.231 42.857 12.58 0.00 42.83 3.72
898 963 2.044551 CCTTGCTGCCCCTCCTTC 60.045 66.667 0.00 0.00 0.00 3.46
918 987 3.059352 AGAAACCAAGAATCCCTCACG 57.941 47.619 0.00 0.00 0.00 4.35
935 1004 0.523072 GCAAGCAAGCCGATCAAGAA 59.477 50.000 0.00 0.00 0.00 2.52
1107 1190 0.679002 CCCAGAGGAACATGGTGCTG 60.679 60.000 10.52 3.59 34.58 4.41
1923 2009 0.599558 CGAGGTCCACGTGGTTCTTA 59.400 55.000 32.74 11.90 36.34 2.10
2345 2447 4.038804 TTGGGGGAGGAGGGAGGG 62.039 72.222 0.00 0.00 0.00 4.30
2443 2566 3.758554 AGACAAGAATGCCGTTAATGCTT 59.241 39.130 2.24 0.00 0.00 3.91
2445 2568 3.685058 GAGACAAGAATGCCGTTAATGC 58.315 45.455 0.00 0.00 0.00 3.56
2453 2576 4.954092 AAAGAATCGAGACAAGAATGCC 57.046 40.909 0.00 0.00 0.00 4.40
2478 2601 3.692101 CACCATAAAACGTAGCATTCCCA 59.308 43.478 0.00 0.00 0.00 4.37
2481 2604 6.178239 AGAACACCATAAAACGTAGCATTC 57.822 37.500 0.00 0.00 0.00 2.67
2485 2611 3.061697 CGGAGAACACCATAAAACGTAGC 59.938 47.826 0.00 0.00 0.00 3.58
2486 2612 4.487948 TCGGAGAACACCATAAAACGTAG 58.512 43.478 0.00 0.00 0.00 3.51
2487 2613 4.517952 TCGGAGAACACCATAAAACGTA 57.482 40.909 0.00 0.00 0.00 3.57
2516 2642 5.534654 GGTCCGGGATTGATTGATTTTCATA 59.465 40.000 0.00 0.00 0.00 2.15
2528 2654 1.200519 AGAATTCGGTCCGGGATTGA 58.799 50.000 12.29 0.00 0.00 2.57
2529 2655 2.038387 AAGAATTCGGTCCGGGATTG 57.962 50.000 12.29 0.00 0.00 2.67
2530 2656 2.640184 GAAAGAATTCGGTCCGGGATT 58.360 47.619 12.29 12.04 0.00 3.01
2531 2657 1.134189 GGAAAGAATTCGGTCCGGGAT 60.134 52.381 12.29 3.25 36.36 3.85
2539 2665 2.755103 CCAAGGGAAGGAAAGAATTCGG 59.245 50.000 0.00 0.00 36.36 4.30
2566 2692 4.148645 GCTTTCTTCGTCGGCGCC 62.149 66.667 19.07 19.07 38.14 6.53
2623 2749 8.500238 GGGGAGGGTAAAGAGAATAGATAAAAA 58.500 37.037 0.00 0.00 0.00 1.94
2632 2758 4.095616 AGAAGGGGAGGGTAAAGAGAAT 57.904 45.455 0.00 0.00 0.00 2.40
2649 2775 7.074502 GCACTTTGTCTTTACAGATGAAGAAG 58.925 38.462 9.75 5.09 36.83 2.85
2651 2777 5.470098 GGCACTTTGTCTTTACAGATGAAGA 59.530 40.000 9.75 0.00 36.83 2.87
2652 2778 5.335191 GGGCACTTTGTCTTTACAGATGAAG 60.335 44.000 0.00 3.86 36.83 3.02
2654 2780 4.072131 GGGCACTTTGTCTTTACAGATGA 58.928 43.478 0.00 0.00 36.83 2.92
2655 2781 3.191371 GGGGCACTTTGTCTTTACAGATG 59.809 47.826 0.00 0.00 36.83 2.90
2668 2794 4.740902 AGAAACTAATCAAGGGGCACTTT 58.259 39.130 0.00 0.00 37.29 2.66
2669 2795 4.388577 AGAAACTAATCAAGGGGCACTT 57.611 40.909 0.00 0.00 41.00 3.16
2674 2802 6.071334 GGGAAAAGAAGAAACTAATCAAGGGG 60.071 42.308 0.00 0.00 0.00 4.79
2676 2804 6.721668 AGGGGAAAAGAAGAAACTAATCAAGG 59.278 38.462 0.00 0.00 0.00 3.61
2750 2879 8.259411 TCGTAGCTCCATTTTGTTAGGTTATAA 58.741 33.333 0.00 0.00 0.00 0.98
2752 2881 6.646267 TCGTAGCTCCATTTTGTTAGGTTAT 58.354 36.000 0.00 0.00 0.00 1.89
2754 2883 4.901868 TCGTAGCTCCATTTTGTTAGGTT 58.098 39.130 0.00 0.00 0.00 3.50
2755 2884 4.546829 TCGTAGCTCCATTTTGTTAGGT 57.453 40.909 0.00 0.00 0.00 3.08
2757 2886 5.235186 CCAGATCGTAGCTCCATTTTGTTAG 59.765 44.000 0.00 0.00 0.00 2.34
2758 2887 5.116180 CCAGATCGTAGCTCCATTTTGTTA 58.884 41.667 0.00 0.00 0.00 2.41
2760 2889 3.535561 CCAGATCGTAGCTCCATTTTGT 58.464 45.455 0.00 0.00 0.00 2.83
2762 2891 2.171448 AGCCAGATCGTAGCTCCATTTT 59.829 45.455 0.00 0.00 28.40 1.82
2763 2892 1.765314 AGCCAGATCGTAGCTCCATTT 59.235 47.619 0.00 0.00 28.40 2.32
2764 2893 1.418334 AGCCAGATCGTAGCTCCATT 58.582 50.000 0.00 0.00 28.40 3.16
2765 2894 1.418334 AAGCCAGATCGTAGCTCCAT 58.582 50.000 7.50 0.00 35.30 3.41
2768 2897 3.504134 TCAGATAAGCCAGATCGTAGCTC 59.496 47.826 7.50 0.00 35.30 4.09
2788 2943 7.941795 TTTTTAAAATTTAAACGGGCGATCA 57.058 28.000 10.12 0.00 0.00 2.92
2868 3044 4.798682 ATTCTCCGGCGACCCCCT 62.799 66.667 9.30 0.00 0.00 4.79
2882 3074 2.374877 GATGGTTCCGCCGCGAATTC 62.375 60.000 15.93 0.00 41.21 2.17
2944 3136 1.486726 CGTCCCTCCAAAGCTTATCCT 59.513 52.381 0.00 0.00 0.00 3.24
3117 3331 2.510691 CACCACCCCATACGCGTC 60.511 66.667 18.63 0.00 0.00 5.19
3140 3354 4.148825 AGTGTCGCCTCATCCCGC 62.149 66.667 0.00 0.00 0.00 6.13
3141 3355 2.105128 GAGTGTCGCCTCATCCCG 59.895 66.667 0.00 0.00 0.00 5.14
3142 3356 2.105128 CGAGTGTCGCCTCATCCC 59.895 66.667 0.00 0.00 31.14 3.85
3143 3357 1.064946 CTCGAGTGTCGCCTCATCC 59.935 63.158 3.62 0.00 40.21 3.51
3144 3358 1.064946 CCTCGAGTGTCGCCTCATC 59.935 63.158 12.31 0.00 40.21 2.92
3145 3359 0.753479 ATCCTCGAGTGTCGCCTCAT 60.753 55.000 12.31 0.00 40.21 2.90
3146 3360 1.378646 ATCCTCGAGTGTCGCCTCA 60.379 57.895 12.31 0.00 40.21 3.86
3147 3361 1.064946 CATCCTCGAGTGTCGCCTC 59.935 63.158 12.31 0.00 40.21 4.70
3148 3362 1.378646 TCATCCTCGAGTGTCGCCT 60.379 57.895 12.31 0.00 40.21 5.52
3149 3363 1.064946 CTCATCCTCGAGTGTCGCC 59.935 63.158 12.31 0.00 40.21 5.54
3150 3364 1.587613 GCTCATCCTCGAGTGTCGC 60.588 63.158 12.31 7.78 40.21 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.