Multiple sequence alignment - TraesCS6B01G385000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G385000 | chr6B | 100.000 | 3137 | 0 | 0 | 1 | 3137 | 659807994 | 659811130 | 0.000000e+00 | 5794.0 |
1 | TraesCS6B01G385000 | chr6B | 91.897 | 506 | 39 | 2 | 1634 | 2138 | 659653862 | 659653358 | 0.000000e+00 | 706.0 |
2 | TraesCS6B01G385000 | chr6B | 81.720 | 93 | 12 | 5 | 2423 | 2512 | 254697 | 254787 | 4.340000e-09 | 73.1 |
3 | TraesCS6B01G385000 | chr6A | 91.477 | 1584 | 103 | 13 | 569 | 2138 | 584757794 | 584759359 | 0.000000e+00 | 2148.0 |
4 | TraesCS6B01G385000 | chr6A | 91.905 | 1433 | 91 | 9 | 746 | 2160 | 584695519 | 584694094 | 0.000000e+00 | 1980.0 |
5 | TraesCS6B01G385000 | chr6A | 90.126 | 1509 | 96 | 17 | 746 | 2226 | 584593395 | 584594878 | 0.000000e+00 | 1912.0 |
6 | TraesCS6B01G385000 | chr6A | 92.706 | 754 | 49 | 1 | 1391 | 2138 | 584717354 | 584716601 | 0.000000e+00 | 1083.0 |
7 | TraesCS6B01G385000 | chr6A | 91.566 | 581 | 39 | 5 | 674 | 1244 | 584717945 | 584717365 | 0.000000e+00 | 793.0 |
8 | TraesCS6B01G385000 | chr6A | 92.059 | 340 | 19 | 6 | 1 | 334 | 584757178 | 584757515 | 3.660000e-129 | 472.0 |
9 | TraesCS6B01G385000 | chr6A | 87.651 | 332 | 33 | 8 | 1 | 326 | 584698752 | 584698423 | 2.280000e-101 | 379.0 |
10 | TraesCS6B01G385000 | chr6A | 86.275 | 255 | 31 | 4 | 2091 | 2344 | 584761581 | 584761832 | 1.110000e-69 | 274.0 |
11 | TraesCS6B01G385000 | chr6A | 86.508 | 126 | 12 | 3 | 335 | 455 | 17893689 | 17893564 | 1.960000e-27 | 134.0 |
12 | TraesCS6B01G385000 | chr3D | 90.648 | 1636 | 101 | 28 | 634 | 2233 | 502158029 | 502159648 | 0.000000e+00 | 2126.0 |
13 | TraesCS6B01G385000 | chr3D | 87.903 | 124 | 11 | 3 | 336 | 455 | 427051957 | 427052080 | 3.260000e-30 | 143.0 |
14 | TraesCS6B01G385000 | chr3B | 90.898 | 1593 | 102 | 23 | 669 | 2233 | 663573413 | 663574990 | 0.000000e+00 | 2098.0 |
15 | TraesCS6B01G385000 | chr3B | 86.290 | 124 | 14 | 2 | 334 | 455 | 11177489 | 11177611 | 7.060000e-27 | 132.0 |
16 | TraesCS6B01G385000 | chr6D | 91.529 | 1511 | 100 | 14 | 674 | 2159 | 436637995 | 436639502 | 0.000000e+00 | 2056.0 |
17 | TraesCS6B01G385000 | chr6D | 89.941 | 1521 | 84 | 24 | 746 | 2226 | 436420921 | 436422412 | 0.000000e+00 | 1897.0 |
18 | TraesCS6B01G385000 | chr6D | 90.401 | 698 | 25 | 9 | 627 | 1312 | 436474536 | 436473869 | 0.000000e+00 | 880.0 |
19 | TraesCS6B01G385000 | chr6D | 92.793 | 222 | 16 | 0 | 577 | 798 | 436552812 | 436552591 | 3.900000e-84 | 322.0 |
20 | TraesCS6B01G385000 | chr6D | 93.035 | 201 | 12 | 1 | 11 | 211 | 436531960 | 436531762 | 3.060000e-75 | 292.0 |
21 | TraesCS6B01G385000 | chr6D | 93.269 | 104 | 7 | 0 | 2091 | 2194 | 436639772 | 436639875 | 1.510000e-33 | 154.0 |
22 | TraesCS6B01G385000 | chr6D | 89.431 | 123 | 9 | 4 | 334 | 455 | 86735751 | 86735870 | 5.420000e-33 | 152.0 |
23 | TraesCS6B01G385000 | chr6D | 93.243 | 74 | 5 | 0 | 264 | 337 | 436474676 | 436474603 | 3.310000e-20 | 110.0 |
24 | TraesCS6B01G385000 | chr5A | 92.475 | 691 | 45 | 5 | 2450 | 3137 | 14252924 | 14252238 | 0.000000e+00 | 981.0 |
25 | TraesCS6B01G385000 | chr5A | 87.903 | 124 | 9 | 4 | 335 | 453 | 641588899 | 641588777 | 1.170000e-29 | 141.0 |
26 | TraesCS6B01G385000 | chr4A | 89.316 | 702 | 40 | 24 | 2441 | 3137 | 618280360 | 618281031 | 0.000000e+00 | 848.0 |
27 | TraesCS6B01G385000 | chr7A | 89.608 | 664 | 49 | 14 | 2485 | 3134 | 638712764 | 638713421 | 0.000000e+00 | 826.0 |
28 | TraesCS6B01G385000 | chr7A | 87.402 | 127 | 10 | 4 | 335 | 455 | 32629536 | 32629410 | 1.170000e-29 | 141.0 |
29 | TraesCS6B01G385000 | chr2B | 86.314 | 643 | 78 | 9 | 2499 | 3137 | 159880951 | 159880315 | 0.000000e+00 | 691.0 |
30 | TraesCS6B01G385000 | chr2B | 92.593 | 54 | 3 | 1 | 3080 | 3132 | 63045684 | 63045737 | 3.350000e-10 | 76.8 |
31 | TraesCS6B01G385000 | chr5D | 92.841 | 447 | 26 | 4 | 2693 | 3137 | 447661570 | 447662012 | 0.000000e+00 | 643.0 |
32 | TraesCS6B01G385000 | chr5D | 93.913 | 230 | 13 | 1 | 2450 | 2678 | 447639442 | 447639671 | 2.320000e-91 | 346.0 |
33 | TraesCS6B01G385000 | chr5D | 89.474 | 76 | 6 | 2 | 455 | 529 | 452502704 | 452502630 | 9.260000e-16 | 95.3 |
34 | TraesCS6B01G385000 | chrUn | 88.742 | 151 | 14 | 2 | 2989 | 3137 | 34776870 | 34777019 | 6.910000e-42 | 182.0 |
35 | TraesCS6B01G385000 | chrUn | 86.765 | 68 | 4 | 4 | 2450 | 2514 | 232546348 | 232546413 | 1.560000e-08 | 71.3 |
36 | TraesCS6B01G385000 | chr1D | 80.469 | 256 | 33 | 11 | 1992 | 2233 | 414876457 | 414876709 | 2.490000e-41 | 180.0 |
37 | TraesCS6B01G385000 | chr2D | 86.614 | 127 | 11 | 3 | 335 | 455 | 27452083 | 27452209 | 5.460000e-28 | 135.0 |
38 | TraesCS6B01G385000 | chr2D | 87.288 | 118 | 13 | 2 | 335 | 452 | 590244830 | 590244945 | 1.960000e-27 | 134.0 |
39 | TraesCS6B01G385000 | chr2D | 90.741 | 54 | 5 | 0 | 2456 | 2509 | 310712256 | 310712309 | 4.340000e-09 | 73.1 |
40 | TraesCS6B01G385000 | chr2A | 84.173 | 139 | 16 | 4 | 323 | 455 | 156617251 | 156617113 | 2.540000e-26 | 130.0 |
41 | TraesCS6B01G385000 | chr2A | 87.097 | 62 | 6 | 2 | 2450 | 2510 | 732005124 | 732005064 | 5.610000e-08 | 69.4 |
42 | TraesCS6B01G385000 | chr7B | 90.164 | 61 | 4 | 2 | 2454 | 2513 | 484275680 | 484275739 | 9.330000e-11 | 78.7 |
43 | TraesCS6B01G385000 | chr1B | 89.474 | 57 | 4 | 2 | 2456 | 2511 | 629755760 | 629755705 | 1.560000e-08 | 71.3 |
44 | TraesCS6B01G385000 | chr7D | 94.737 | 38 | 2 | 0 | 2994 | 3031 | 136316754 | 136316717 | 3.380000e-05 | 60.2 |
45 | TraesCS6B01G385000 | chr5B | 94.737 | 38 | 2 | 0 | 2994 | 3031 | 411805998 | 411806035 | 3.380000e-05 | 60.2 |
46 | TraesCS6B01G385000 | chr4B | 94.737 | 38 | 2 | 0 | 2994 | 3031 | 57410802 | 57410839 | 3.380000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G385000 | chr6B | 659807994 | 659811130 | 3136 | False | 5794.000000 | 5794 | 100.000 | 1 | 3137 | 1 | chr6B.!!$F2 | 3136 |
1 | TraesCS6B01G385000 | chr6B | 659653358 | 659653862 | 504 | True | 706.000000 | 706 | 91.897 | 1634 | 2138 | 1 | chr6B.!!$R1 | 504 |
2 | TraesCS6B01G385000 | chr6A | 584593395 | 584594878 | 1483 | False | 1912.000000 | 1912 | 90.126 | 746 | 2226 | 1 | chr6A.!!$F1 | 1480 |
3 | TraesCS6B01G385000 | chr6A | 584694094 | 584698752 | 4658 | True | 1179.500000 | 1980 | 89.778 | 1 | 2160 | 2 | chr6A.!!$R2 | 2159 |
4 | TraesCS6B01G385000 | chr6A | 584757178 | 584761832 | 4654 | False | 964.666667 | 2148 | 89.937 | 1 | 2344 | 3 | chr6A.!!$F2 | 2343 |
5 | TraesCS6B01G385000 | chr6A | 584716601 | 584717945 | 1344 | True | 938.000000 | 1083 | 92.136 | 674 | 2138 | 2 | chr6A.!!$R3 | 1464 |
6 | TraesCS6B01G385000 | chr3D | 502158029 | 502159648 | 1619 | False | 2126.000000 | 2126 | 90.648 | 634 | 2233 | 1 | chr3D.!!$F2 | 1599 |
7 | TraesCS6B01G385000 | chr3B | 663573413 | 663574990 | 1577 | False | 2098.000000 | 2098 | 90.898 | 669 | 2233 | 1 | chr3B.!!$F2 | 1564 |
8 | TraesCS6B01G385000 | chr6D | 436420921 | 436422412 | 1491 | False | 1897.000000 | 1897 | 89.941 | 746 | 2226 | 1 | chr6D.!!$F2 | 1480 |
9 | TraesCS6B01G385000 | chr6D | 436637995 | 436639875 | 1880 | False | 1105.000000 | 2056 | 92.399 | 674 | 2194 | 2 | chr6D.!!$F3 | 1520 |
10 | TraesCS6B01G385000 | chr6D | 436473869 | 436474676 | 807 | True | 495.000000 | 880 | 91.822 | 264 | 1312 | 2 | chr6D.!!$R3 | 1048 |
11 | TraesCS6B01G385000 | chr5A | 14252238 | 14252924 | 686 | True | 981.000000 | 981 | 92.475 | 2450 | 3137 | 1 | chr5A.!!$R1 | 687 |
12 | TraesCS6B01G385000 | chr4A | 618280360 | 618281031 | 671 | False | 848.000000 | 848 | 89.316 | 2441 | 3137 | 1 | chr4A.!!$F1 | 696 |
13 | TraesCS6B01G385000 | chr7A | 638712764 | 638713421 | 657 | False | 826.000000 | 826 | 89.608 | 2485 | 3134 | 1 | chr7A.!!$F1 | 649 |
14 | TraesCS6B01G385000 | chr2B | 159880315 | 159880951 | 636 | True | 691.000000 | 691 | 86.314 | 2499 | 3137 | 1 | chr2B.!!$R1 | 638 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
515 | 528 | 0.031515 | TGGACTGGGGATATCACCGT | 60.032 | 55.0 | 19.27 | 18.41 | 44.25 | 4.83 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2369 | 7758 | 0.404426 | GGGGAGTGTGGCTAGGTTTT | 59.596 | 55.0 | 0.0 | 0.0 | 0.0 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
295 | 308 | 7.573968 | AAGTGATAAAGAAGAAAGTGCAAGT | 57.426 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
328 | 341 | 6.683974 | ATTGGATTCTCCGTTGATTTACTG | 57.316 | 37.500 | 0.00 | 0.00 | 40.17 | 2.74 |
329 | 342 | 5.414789 | TGGATTCTCCGTTGATTTACTGA | 57.585 | 39.130 | 0.00 | 0.00 | 40.17 | 3.41 |
330 | 343 | 5.175859 | TGGATTCTCCGTTGATTTACTGAC | 58.824 | 41.667 | 0.00 | 0.00 | 40.17 | 3.51 |
331 | 344 | 4.267928 | GGATTCTCCGTTGATTTACTGACG | 59.732 | 45.833 | 0.00 | 0.00 | 35.44 | 4.35 |
358 | 371 | 5.798015 | TTTTTAACACAGTACAGACGCAA | 57.202 | 34.783 | 0.00 | 0.00 | 0.00 | 4.85 |
360 | 373 | 1.217882 | AACACAGTACAGACGCAAGC | 58.782 | 50.000 | 0.00 | 0.00 | 45.62 | 4.01 |
361 | 374 | 0.104120 | ACACAGTACAGACGCAAGCA | 59.896 | 50.000 | 0.00 | 0.00 | 45.62 | 3.91 |
362 | 375 | 0.508641 | CACAGTACAGACGCAAGCAC | 59.491 | 55.000 | 0.00 | 0.00 | 45.62 | 4.40 |
363 | 376 | 0.389391 | ACAGTACAGACGCAAGCACT | 59.611 | 50.000 | 0.00 | 0.00 | 45.62 | 4.40 |
364 | 377 | 1.063806 | CAGTACAGACGCAAGCACTC | 58.936 | 55.000 | 0.00 | 0.00 | 45.62 | 3.51 |
365 | 378 | 0.673985 | AGTACAGACGCAAGCACTCA | 59.326 | 50.000 | 0.00 | 0.00 | 45.62 | 3.41 |
366 | 379 | 1.273606 | AGTACAGACGCAAGCACTCAT | 59.726 | 47.619 | 0.00 | 0.00 | 45.62 | 2.90 |
367 | 380 | 2.492088 | AGTACAGACGCAAGCACTCATA | 59.508 | 45.455 | 0.00 | 0.00 | 45.62 | 2.15 |
368 | 381 | 1.714794 | ACAGACGCAAGCACTCATAC | 58.285 | 50.000 | 0.00 | 0.00 | 45.62 | 2.39 |
369 | 382 | 1.000843 | ACAGACGCAAGCACTCATACA | 59.999 | 47.619 | 0.00 | 0.00 | 45.62 | 2.29 |
370 | 383 | 2.274437 | CAGACGCAAGCACTCATACAT | 58.726 | 47.619 | 0.00 | 0.00 | 45.62 | 2.29 |
371 | 384 | 3.119137 | ACAGACGCAAGCACTCATACATA | 60.119 | 43.478 | 0.00 | 0.00 | 45.62 | 2.29 |
372 | 385 | 3.243877 | CAGACGCAAGCACTCATACATAC | 59.756 | 47.826 | 0.00 | 0.00 | 45.62 | 2.39 |
373 | 386 | 2.193447 | ACGCAAGCACTCATACATACG | 58.807 | 47.619 | 0.00 | 0.00 | 45.62 | 3.06 |
374 | 387 | 2.193447 | CGCAAGCACTCATACATACGT | 58.807 | 47.619 | 0.00 | 0.00 | 0.00 | 3.57 |
375 | 388 | 2.034591 | CGCAAGCACTCATACATACGTG | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
382 | 395 | 5.561199 | CACTCATACATACGTGCATACAC | 57.439 | 43.478 | 0.00 | 0.00 | 43.76 | 2.90 |
383 | 396 | 5.281727 | CACTCATACATACGTGCATACACT | 58.718 | 41.667 | 0.00 | 0.00 | 45.10 | 3.55 |
384 | 397 | 5.399596 | CACTCATACATACGTGCATACACTC | 59.600 | 44.000 | 0.00 | 0.00 | 45.10 | 3.51 |
385 | 398 | 5.067283 | ACTCATACATACGTGCATACACTCA | 59.933 | 40.000 | 0.00 | 0.00 | 45.10 | 3.41 |
386 | 399 | 5.278604 | TCATACATACGTGCATACACTCAC | 58.721 | 41.667 | 0.00 | 0.00 | 45.10 | 3.51 |
387 | 400 | 3.868757 | ACATACGTGCATACACTCACT | 57.131 | 42.857 | 0.00 | 0.00 | 45.10 | 3.41 |
388 | 401 | 3.770666 | ACATACGTGCATACACTCACTC | 58.229 | 45.455 | 0.00 | 0.00 | 45.10 | 3.51 |
389 | 402 | 2.933495 | TACGTGCATACACTCACTCC | 57.067 | 50.000 | 0.00 | 0.00 | 45.10 | 3.85 |
390 | 403 | 1.257743 | ACGTGCATACACTCACTCCT | 58.742 | 50.000 | 0.00 | 0.00 | 45.10 | 3.69 |
391 | 404 | 2.443416 | ACGTGCATACACTCACTCCTA | 58.557 | 47.619 | 0.00 | 0.00 | 45.10 | 2.94 |
392 | 405 | 3.024547 | ACGTGCATACACTCACTCCTAT | 58.975 | 45.455 | 0.00 | 0.00 | 45.10 | 2.57 |
393 | 406 | 4.204799 | ACGTGCATACACTCACTCCTATA | 58.795 | 43.478 | 0.00 | 0.00 | 45.10 | 1.31 |
394 | 407 | 4.276183 | ACGTGCATACACTCACTCCTATAG | 59.724 | 45.833 | 0.00 | 0.00 | 45.10 | 1.31 |
395 | 408 | 4.276183 | CGTGCATACACTCACTCCTATAGT | 59.724 | 45.833 | 0.00 | 0.00 | 45.10 | 2.12 |
396 | 409 | 5.469084 | CGTGCATACACTCACTCCTATAGTA | 59.531 | 44.000 | 0.00 | 0.00 | 45.10 | 1.82 |
397 | 410 | 6.149640 | CGTGCATACACTCACTCCTATAGTAT | 59.850 | 42.308 | 0.00 | 0.00 | 45.10 | 2.12 |
398 | 411 | 7.333672 | CGTGCATACACTCACTCCTATAGTATA | 59.666 | 40.741 | 0.00 | 0.00 | 45.10 | 1.47 |
399 | 412 | 8.452534 | GTGCATACACTCACTCCTATAGTATAC | 58.547 | 40.741 | 0.00 | 0.00 | 43.85 | 1.47 |
400 | 413 | 8.161425 | TGCATACACTCACTCCTATAGTATACA | 58.839 | 37.037 | 5.50 | 0.00 | 35.76 | 2.29 |
401 | 414 | 8.452534 | GCATACACTCACTCCTATAGTATACAC | 58.547 | 40.741 | 5.50 | 0.00 | 35.76 | 2.90 |
402 | 415 | 9.503399 | CATACACTCACTCCTATAGTATACACA | 57.497 | 37.037 | 5.50 | 0.00 | 35.76 | 3.72 |
403 | 416 | 7.804843 | ACACTCACTCCTATAGTATACACAC | 57.195 | 40.000 | 5.50 | 0.00 | 35.76 | 3.82 |
404 | 417 | 7.344134 | ACACTCACTCCTATAGTATACACACA | 58.656 | 38.462 | 5.50 | 0.00 | 35.76 | 3.72 |
405 | 418 | 7.282675 | ACACTCACTCCTATAGTATACACACAC | 59.717 | 40.741 | 5.50 | 0.00 | 35.76 | 3.82 |
406 | 419 | 6.771749 | ACTCACTCCTATAGTATACACACACC | 59.228 | 42.308 | 5.50 | 0.00 | 35.76 | 4.16 |
407 | 420 | 6.066690 | TCACTCCTATAGTATACACACACCC | 58.933 | 44.000 | 5.50 | 0.00 | 35.76 | 4.61 |
408 | 421 | 6.069331 | CACTCCTATAGTATACACACACCCT | 58.931 | 44.000 | 5.50 | 0.00 | 35.76 | 4.34 |
409 | 422 | 7.072834 | TCACTCCTATAGTATACACACACCCTA | 59.927 | 40.741 | 5.50 | 0.00 | 35.76 | 3.53 |
410 | 423 | 7.889073 | CACTCCTATAGTATACACACACCCTAT | 59.111 | 40.741 | 5.50 | 0.00 | 35.76 | 2.57 |
411 | 424 | 8.108364 | ACTCCTATAGTATACACACACCCTATC | 58.892 | 40.741 | 5.50 | 0.00 | 36.36 | 2.08 |
412 | 425 | 7.408543 | TCCTATAGTATACACACACCCTATCC | 58.591 | 42.308 | 5.50 | 0.00 | 0.00 | 2.59 |
413 | 426 | 6.318144 | CCTATAGTATACACACACCCTATCCG | 59.682 | 46.154 | 5.50 | 0.00 | 0.00 | 4.18 |
414 | 427 | 3.907221 | AGTATACACACACCCTATCCGT | 58.093 | 45.455 | 5.50 | 0.00 | 0.00 | 4.69 |
415 | 428 | 3.635373 | AGTATACACACACCCTATCCGTG | 59.365 | 47.826 | 5.50 | 0.00 | 37.26 | 4.94 |
416 | 429 | 1.927487 | TACACACACCCTATCCGTGT | 58.073 | 50.000 | 0.00 | 0.00 | 45.21 | 4.49 |
420 | 433 | 1.898154 | ACACCCTATCCGTGTGAGC | 59.102 | 57.895 | 0.00 | 0.00 | 42.75 | 4.26 |
421 | 434 | 0.902984 | ACACCCTATCCGTGTGAGCA | 60.903 | 55.000 | 0.00 | 0.00 | 42.75 | 4.26 |
422 | 435 | 0.460284 | CACCCTATCCGTGTGAGCAC | 60.460 | 60.000 | 0.00 | 0.00 | 41.97 | 4.40 |
423 | 436 | 1.144057 | CCCTATCCGTGTGAGCACC | 59.856 | 63.158 | 0.00 | 0.00 | 42.39 | 5.01 |
424 | 437 | 1.330655 | CCCTATCCGTGTGAGCACCT | 61.331 | 60.000 | 0.00 | 0.00 | 42.39 | 4.00 |
425 | 438 | 0.103208 | CCTATCCGTGTGAGCACCTC | 59.897 | 60.000 | 0.00 | 0.00 | 42.39 | 3.85 |
426 | 439 | 0.103208 | CTATCCGTGTGAGCACCTCC | 59.897 | 60.000 | 0.00 | 0.00 | 42.39 | 4.30 |
427 | 440 | 1.663379 | TATCCGTGTGAGCACCTCCG | 61.663 | 60.000 | 0.00 | 0.00 | 42.39 | 4.63 |
428 | 441 | 3.680786 | CCGTGTGAGCACCTCCGA | 61.681 | 66.667 | 0.00 | 0.00 | 42.39 | 4.55 |
429 | 442 | 2.126307 | CGTGTGAGCACCTCCGAG | 60.126 | 66.667 | 0.00 | 0.00 | 42.39 | 4.63 |
430 | 443 | 2.626780 | CGTGTGAGCACCTCCGAGA | 61.627 | 63.158 | 0.00 | 0.00 | 42.39 | 4.04 |
431 | 444 | 1.214062 | GTGTGAGCACCTCCGAGAG | 59.786 | 63.158 | 0.00 | 0.00 | 39.61 | 3.20 |
432 | 445 | 1.074951 | TGTGAGCACCTCCGAGAGA | 59.925 | 57.895 | 0.00 | 0.00 | 0.00 | 3.10 |
433 | 446 | 1.244697 | TGTGAGCACCTCCGAGAGAC | 61.245 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
434 | 447 | 0.963355 | GTGAGCACCTCCGAGAGACT | 60.963 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
435 | 448 | 0.962855 | TGAGCACCTCCGAGAGACTG | 60.963 | 60.000 | 0.00 | 0.22 | 0.00 | 3.51 |
436 | 449 | 0.678366 | GAGCACCTCCGAGAGACTGA | 60.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
437 | 450 | 0.679640 | AGCACCTCCGAGAGACTGAG | 60.680 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
438 | 451 | 0.963355 | GCACCTCCGAGAGACTGAGT | 60.963 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
439 | 452 | 1.091537 | CACCTCCGAGAGACTGAGTC | 58.908 | 60.000 | 3.98 | 3.98 | 0.00 | 3.36 |
440 | 453 | 0.391927 | ACCTCCGAGAGACTGAGTCG | 60.392 | 60.000 | 6.99 | 0.00 | 37.67 | 4.18 |
442 | 455 | 2.795297 | CCGAGAGACTGAGTCGGC | 59.205 | 66.667 | 6.99 | 3.72 | 46.18 | 5.54 |
443 | 456 | 2.041115 | CCGAGAGACTGAGTCGGCA | 61.041 | 63.158 | 6.99 | 0.00 | 46.18 | 5.69 |
444 | 457 | 1.380403 | CCGAGAGACTGAGTCGGCAT | 61.380 | 60.000 | 6.99 | 0.00 | 46.18 | 4.40 |
445 | 458 | 1.300481 | CGAGAGACTGAGTCGGCATA | 58.700 | 55.000 | 6.99 | 0.00 | 37.67 | 3.14 |
446 | 459 | 1.876799 | CGAGAGACTGAGTCGGCATAT | 59.123 | 52.381 | 6.99 | 0.00 | 37.67 | 1.78 |
447 | 460 | 2.095969 | CGAGAGACTGAGTCGGCATATC | 60.096 | 54.545 | 6.99 | 0.00 | 37.67 | 1.63 |
448 | 461 | 2.881513 | GAGAGACTGAGTCGGCATATCA | 59.118 | 50.000 | 6.99 | 0.00 | 37.67 | 2.15 |
449 | 462 | 3.495331 | AGAGACTGAGTCGGCATATCAT | 58.505 | 45.455 | 6.99 | 0.00 | 37.67 | 2.45 |
450 | 463 | 3.505680 | AGAGACTGAGTCGGCATATCATC | 59.494 | 47.826 | 6.99 | 0.00 | 37.67 | 2.92 |
451 | 464 | 3.495331 | AGACTGAGTCGGCATATCATCT | 58.505 | 45.455 | 6.99 | 0.00 | 37.67 | 2.90 |
452 | 465 | 3.894427 | AGACTGAGTCGGCATATCATCTT | 59.106 | 43.478 | 6.99 | 0.00 | 37.67 | 2.40 |
453 | 466 | 3.986572 | GACTGAGTCGGCATATCATCTTG | 59.013 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
454 | 467 | 3.638627 | ACTGAGTCGGCATATCATCTTGA | 59.361 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
455 | 468 | 4.282957 | ACTGAGTCGGCATATCATCTTGAT | 59.717 | 41.667 | 0.00 | 0.00 | 40.72 | 2.57 |
456 | 469 | 5.478332 | ACTGAGTCGGCATATCATCTTGATA | 59.522 | 40.000 | 0.00 | 0.05 | 42.83 | 2.15 |
457 | 470 | 6.015095 | ACTGAGTCGGCATATCATCTTGATAA | 60.015 | 38.462 | 0.00 | 0.00 | 42.05 | 1.75 |
458 | 471 | 6.758254 | TGAGTCGGCATATCATCTTGATAAA | 58.242 | 36.000 | 1.64 | 0.00 | 42.05 | 1.40 |
459 | 472 | 7.389232 | TGAGTCGGCATATCATCTTGATAAAT | 58.611 | 34.615 | 1.64 | 0.00 | 42.05 | 1.40 |
460 | 473 | 7.879677 | TGAGTCGGCATATCATCTTGATAAATT | 59.120 | 33.333 | 1.64 | 0.00 | 42.05 | 1.82 |
461 | 474 | 8.261492 | AGTCGGCATATCATCTTGATAAATTC | 57.739 | 34.615 | 1.64 | 0.00 | 42.05 | 2.17 |
462 | 475 | 7.879677 | AGTCGGCATATCATCTTGATAAATTCA | 59.120 | 33.333 | 1.64 | 0.00 | 42.05 | 2.57 |
463 | 476 | 8.173775 | GTCGGCATATCATCTTGATAAATTCAG | 58.826 | 37.037 | 1.64 | 0.00 | 42.05 | 3.02 |
464 | 477 | 7.335171 | TCGGCATATCATCTTGATAAATTCAGG | 59.665 | 37.037 | 1.64 | 0.00 | 42.05 | 3.86 |
465 | 478 | 7.335171 | CGGCATATCATCTTGATAAATTCAGGA | 59.665 | 37.037 | 1.64 | 0.00 | 42.05 | 3.86 |
466 | 479 | 9.017509 | GGCATATCATCTTGATAAATTCAGGAA | 57.982 | 33.333 | 1.64 | 0.00 | 42.96 | 3.36 |
473 | 486 | 9.338291 | CATCTTGATAAATTCAGGAATAATGCG | 57.662 | 33.333 | 0.00 | 0.00 | 42.96 | 4.73 |
474 | 487 | 8.675705 | TCTTGATAAATTCAGGAATAATGCGA | 57.324 | 30.769 | 0.00 | 0.00 | 37.50 | 5.10 |
475 | 488 | 9.119418 | TCTTGATAAATTCAGGAATAATGCGAA | 57.881 | 29.630 | 0.00 | 0.00 | 37.50 | 4.70 |
476 | 489 | 9.390795 | CTTGATAAATTCAGGAATAATGCGAAG | 57.609 | 33.333 | 0.00 | 0.00 | 33.37 | 3.79 |
477 | 490 | 8.675705 | TGATAAATTCAGGAATAATGCGAAGA | 57.324 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
478 | 491 | 8.559536 | TGATAAATTCAGGAATAATGCGAAGAC | 58.440 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
479 | 492 | 5.757850 | AATTCAGGAATAATGCGAAGACC | 57.242 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
480 | 493 | 3.904800 | TCAGGAATAATGCGAAGACCA | 57.095 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
481 | 494 | 4.422073 | TCAGGAATAATGCGAAGACCAT | 57.578 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
482 | 495 | 4.129380 | TCAGGAATAATGCGAAGACCATG | 58.871 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
483 | 496 | 4.129380 | CAGGAATAATGCGAAGACCATGA | 58.871 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
484 | 497 | 4.024556 | CAGGAATAATGCGAAGACCATGAC | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
485 | 498 | 4.130118 | GGAATAATGCGAAGACCATGACT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
486 | 499 | 4.576463 | GGAATAATGCGAAGACCATGACTT | 59.424 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
487 | 500 | 5.277538 | GGAATAATGCGAAGACCATGACTTC | 60.278 | 44.000 | 16.92 | 16.92 | 39.92 | 3.01 |
488 | 501 | 2.768253 | ATGCGAAGACCATGACTTCA | 57.232 | 45.000 | 22.52 | 11.87 | 42.39 | 3.02 |
489 | 502 | 2.542020 | TGCGAAGACCATGACTTCAA | 57.458 | 45.000 | 22.52 | 13.06 | 42.39 | 2.69 |
490 | 503 | 2.143122 | TGCGAAGACCATGACTTCAAC | 58.857 | 47.619 | 22.52 | 16.99 | 42.39 | 3.18 |
491 | 504 | 1.464997 | GCGAAGACCATGACTTCAACC | 59.535 | 52.381 | 22.52 | 12.32 | 42.39 | 3.77 |
492 | 505 | 2.076863 | CGAAGACCATGACTTCAACCC | 58.923 | 52.381 | 22.52 | 6.08 | 42.39 | 4.11 |
493 | 506 | 2.289694 | CGAAGACCATGACTTCAACCCT | 60.290 | 50.000 | 22.52 | 0.00 | 42.39 | 4.34 |
494 | 507 | 2.867109 | AGACCATGACTTCAACCCTG | 57.133 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
495 | 508 | 2.338809 | AGACCATGACTTCAACCCTGA | 58.661 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
496 | 509 | 2.915604 | AGACCATGACTTCAACCCTGAT | 59.084 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
497 | 510 | 3.012518 | GACCATGACTTCAACCCTGATG | 58.987 | 50.000 | 0.00 | 0.00 | 33.85 | 3.07 |
498 | 511 | 2.291153 | ACCATGACTTCAACCCTGATGG | 60.291 | 50.000 | 0.00 | 0.00 | 41.37 | 3.51 |
499 | 512 | 2.025981 | CCATGACTTCAACCCTGATGGA | 60.026 | 50.000 | 0.00 | 0.00 | 38.00 | 3.41 |
500 | 513 | 2.859165 | TGACTTCAACCCTGATGGAC | 57.141 | 50.000 | 0.00 | 0.00 | 38.00 | 4.02 |
501 | 514 | 2.338809 | TGACTTCAACCCTGATGGACT | 58.661 | 47.619 | 0.00 | 0.00 | 38.00 | 3.85 |
502 | 515 | 2.038952 | TGACTTCAACCCTGATGGACTG | 59.961 | 50.000 | 0.00 | 0.00 | 38.00 | 3.51 |
503 | 516 | 1.352352 | ACTTCAACCCTGATGGACTGG | 59.648 | 52.381 | 0.00 | 0.00 | 38.00 | 4.00 |
511 | 524 | 2.624495 | CCTGATGGACTGGGGATATCA | 58.376 | 52.381 | 4.83 | 0.00 | 34.55 | 2.15 |
512 | 525 | 2.304180 | CCTGATGGACTGGGGATATCAC | 59.696 | 54.545 | 4.83 | 0.00 | 34.55 | 3.06 |
513 | 526 | 2.304180 | CTGATGGACTGGGGATATCACC | 59.696 | 54.545 | 17.82 | 17.82 | 40.76 | 4.02 |
514 | 527 | 1.276421 | GATGGACTGGGGATATCACCG | 59.724 | 57.143 | 19.27 | 15.47 | 44.25 | 4.94 |
515 | 528 | 0.031515 | TGGACTGGGGATATCACCGT | 60.032 | 55.000 | 19.27 | 18.41 | 44.25 | 4.83 |
516 | 529 | 0.680061 | GGACTGGGGATATCACCGTC | 59.320 | 60.000 | 27.22 | 27.22 | 44.25 | 4.79 |
517 | 530 | 0.680061 | GACTGGGGATATCACCGTCC | 59.320 | 60.000 | 25.91 | 13.19 | 44.25 | 4.79 |
524 | 537 | 3.938289 | GGATATCACCGTCCCTCTAAC | 57.062 | 52.381 | 4.83 | 0.00 | 0.00 | 2.34 |
525 | 538 | 2.561858 | GGATATCACCGTCCCTCTAACC | 59.438 | 54.545 | 4.83 | 0.00 | 0.00 | 2.85 |
526 | 539 | 2.832643 | TATCACCGTCCCTCTAACCA | 57.167 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
527 | 540 | 2.176247 | ATCACCGTCCCTCTAACCAT | 57.824 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
528 | 541 | 1.481871 | TCACCGTCCCTCTAACCATC | 58.518 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
529 | 542 | 1.006758 | TCACCGTCCCTCTAACCATCT | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
530 | 543 | 2.242965 | TCACCGTCCCTCTAACCATCTA | 59.757 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
531 | 544 | 2.623889 | CACCGTCCCTCTAACCATCTAG | 59.376 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
532 | 545 | 2.240279 | CCGTCCCTCTAACCATCTAGG | 58.760 | 57.143 | 0.00 | 0.00 | 45.67 | 3.02 |
543 | 556 | 2.802787 | CCATCTAGGTTCGCTACAGG | 57.197 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
544 | 557 | 1.269831 | CCATCTAGGTTCGCTACAGGC | 60.270 | 57.143 | 0.00 | 0.00 | 37.64 | 4.85 |
545 | 558 | 1.409064 | CATCTAGGTTCGCTACAGGCA | 59.591 | 52.381 | 0.00 | 0.00 | 41.91 | 4.75 |
546 | 559 | 1.103803 | TCTAGGTTCGCTACAGGCAG | 58.896 | 55.000 | 0.00 | 0.00 | 41.91 | 4.85 |
547 | 560 | 1.103803 | CTAGGTTCGCTACAGGCAGA | 58.896 | 55.000 | 0.00 | 0.00 | 41.91 | 4.26 |
548 | 561 | 0.815734 | TAGGTTCGCTACAGGCAGAC | 59.184 | 55.000 | 0.00 | 0.00 | 41.91 | 3.51 |
549 | 562 | 1.448013 | GGTTCGCTACAGGCAGACC | 60.448 | 63.158 | 0.00 | 0.00 | 41.91 | 3.85 |
607 | 620 | 3.700538 | AGAGGCAAATTGCTATGGACAA | 58.299 | 40.909 | 18.04 | 0.00 | 44.28 | 3.18 |
923 | 4007 | 3.904479 | TCGCATCCATCGCTCGCT | 61.904 | 61.111 | 0.00 | 0.00 | 0.00 | 4.93 |
1497 | 4602 | 3.399181 | GTCGAGGTGCCCATCCCA | 61.399 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
1701 | 4812 | 0.036388 | GGGAACTTCGAGCCATCACA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1866 | 4977 | 0.467384 | CCATGATCGCCAAGGACTCT | 59.533 | 55.000 | 0.00 | 0.00 | 35.72 | 3.24 |
1867 | 4978 | 1.688735 | CCATGATCGCCAAGGACTCTA | 59.311 | 52.381 | 0.00 | 0.00 | 35.72 | 2.43 |
2148 | 7529 | 1.683917 | GAGATGTGATACGGGCTCTGT | 59.316 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2160 | 7541 | 5.784578 | ACGGGCTCTGTTTATTTTTCTTT | 57.215 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2162 | 7543 | 6.909909 | ACGGGCTCTGTTTATTTTTCTTTAG | 58.090 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2164 | 7545 | 6.625081 | CGGGCTCTGTTTATTTTTCTTTAGGG | 60.625 | 42.308 | 0.00 | 0.00 | 0.00 | 3.53 |
2165 | 7546 | 6.210784 | GGGCTCTGTTTATTTTTCTTTAGGGT | 59.789 | 38.462 | 0.00 | 0.00 | 0.00 | 4.34 |
2196 | 7584 | 9.917129 | TTACTTGAACTATCGTTTTAGATGTCA | 57.083 | 29.630 | 1.21 | 0.00 | 32.39 | 3.58 |
2197 | 7585 | 8.827177 | ACTTGAACTATCGTTTTAGATGTCAA | 57.173 | 30.769 | 0.00 | 0.00 | 32.39 | 3.18 |
2240 | 7628 | 9.213777 | TGATCACTTATTCCTATTACCAGTCTT | 57.786 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2241 | 7629 | 9.482627 | GATCACTTATTCCTATTACCAGTCTTG | 57.517 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2242 | 7630 | 7.272978 | TCACTTATTCCTATTACCAGTCTTGC | 58.727 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
2243 | 7631 | 7.047891 | CACTTATTCCTATTACCAGTCTTGCA | 58.952 | 38.462 | 0.00 | 0.00 | 0.00 | 4.08 |
2252 | 7641 | 2.843701 | ACCAGTCTTGCAAAGTCTCAG | 58.156 | 47.619 | 0.00 | 0.00 | 46.34 | 3.35 |
2264 | 7653 | 8.560355 | TTGCAAAGTCTCAGTTAATGCTAATA | 57.440 | 30.769 | 0.00 | 0.00 | 33.66 | 0.98 |
2265 | 7654 | 8.737168 | TGCAAAGTCTCAGTTAATGCTAATAT | 57.263 | 30.769 | 0.00 | 0.00 | 33.66 | 1.28 |
2278 | 7667 | 9.209175 | GTTAATGCTAATATCCGTGAGATCTTT | 57.791 | 33.333 | 0.00 | 0.00 | 36.33 | 2.52 |
2279 | 7668 | 9.778741 | TTAATGCTAATATCCGTGAGATCTTTT | 57.221 | 29.630 | 0.00 | 0.00 | 36.33 | 2.27 |
2280 | 7669 | 7.897575 | ATGCTAATATCCGTGAGATCTTTTC | 57.102 | 36.000 | 0.00 | 0.00 | 36.33 | 2.29 |
2281 | 7670 | 6.223852 | TGCTAATATCCGTGAGATCTTTTCC | 58.776 | 40.000 | 0.00 | 0.00 | 36.33 | 3.13 |
2282 | 7671 | 5.346281 | GCTAATATCCGTGAGATCTTTTCCG | 59.654 | 44.000 | 0.00 | 0.00 | 36.33 | 4.30 |
2289 | 7678 | 3.610242 | CGTGAGATCTTTTCCGTTGAGAG | 59.390 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
2290 | 7679 | 3.369451 | GTGAGATCTTTTCCGTTGAGAGC | 59.631 | 47.826 | 0.00 | 0.00 | 0.00 | 4.09 |
2304 | 7693 | 5.334260 | CCGTTGAGAGCCGTGTAAAATTTTA | 60.334 | 40.000 | 6.54 | 6.54 | 0.00 | 1.52 |
2309 | 7698 | 8.736751 | TGAGAGCCGTGTAAAATTTTATTTTC | 57.263 | 30.769 | 13.54 | 2.16 | 0.00 | 2.29 |
2335 | 7724 | 8.486383 | CAGTATTTTCTTATTCTCTCTCGCATG | 58.514 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
2357 | 7746 | 8.434733 | CATGTAATGTCATCTGATTGAGACTT | 57.565 | 34.615 | 7.76 | 0.58 | 40.20 | 3.01 |
2358 | 7747 | 7.838771 | TGTAATGTCATCTGATTGAGACTTG | 57.161 | 36.000 | 7.76 | 0.00 | 31.75 | 3.16 |
2359 | 7748 | 7.614494 | TGTAATGTCATCTGATTGAGACTTGA | 58.386 | 34.615 | 7.76 | 0.00 | 31.75 | 3.02 |
2360 | 7749 | 8.262933 | TGTAATGTCATCTGATTGAGACTTGAT | 58.737 | 33.333 | 7.76 | 0.00 | 31.75 | 2.57 |
2361 | 7750 | 9.107177 | GTAATGTCATCTGATTGAGACTTGATT | 57.893 | 33.333 | 7.76 | 3.53 | 31.75 | 2.57 |
2363 | 7752 | 9.676861 | AATGTCATCTGATTGAGACTTGATTAA | 57.323 | 29.630 | 7.76 | 0.00 | 31.75 | 1.40 |
2364 | 7753 | 9.676861 | ATGTCATCTGATTGAGACTTGATTAAA | 57.323 | 29.630 | 7.76 | 0.00 | 31.75 | 1.52 |
2365 | 7754 | 9.676861 | TGTCATCTGATTGAGACTTGATTAAAT | 57.323 | 29.630 | 7.76 | 0.00 | 31.75 | 1.40 |
2375 | 7764 | 8.924511 | TGAGACTTGATTAAATCTCAAAACCT | 57.075 | 30.769 | 8.73 | 0.00 | 43.47 | 3.50 |
2378 | 7767 | 8.951243 | AGACTTGATTAAATCTCAAAACCTAGC | 58.049 | 33.333 | 0.00 | 0.00 | 32.53 | 3.42 |
2379 | 7768 | 8.056407 | ACTTGATTAAATCTCAAAACCTAGCC | 57.944 | 34.615 | 0.00 | 0.00 | 32.53 | 3.93 |
2380 | 7769 | 7.669722 | ACTTGATTAAATCTCAAAACCTAGCCA | 59.330 | 33.333 | 0.00 | 0.00 | 32.53 | 4.75 |
2381 | 7770 | 7.391148 | TGATTAAATCTCAAAACCTAGCCAC | 57.609 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2382 | 7771 | 6.945435 | TGATTAAATCTCAAAACCTAGCCACA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2383 | 7772 | 6.569179 | TTAAATCTCAAAACCTAGCCACAC | 57.431 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
2384 | 7773 | 4.373156 | AATCTCAAAACCTAGCCACACT | 57.627 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
2385 | 7774 | 3.402628 | TCTCAAAACCTAGCCACACTC | 57.597 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2386 | 7775 | 2.038557 | TCTCAAAACCTAGCCACACTCC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2387 | 7776 | 1.073284 | TCAAAACCTAGCCACACTCCC | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2388 | 7777 | 0.404426 | AAAACCTAGCCACACTCCCC | 59.596 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2389 | 7778 | 0.475828 | AAACCTAGCCACACTCCCCT | 60.476 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2390 | 7779 | 0.416231 | AACCTAGCCACACTCCCCTA | 59.584 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2391 | 7780 | 0.642710 | ACCTAGCCACACTCCCCTAT | 59.357 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2392 | 7781 | 1.009675 | ACCTAGCCACACTCCCCTATT | 59.990 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
2393 | 7782 | 2.249214 | ACCTAGCCACACTCCCCTATTA | 59.751 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2394 | 7783 | 3.116317 | ACCTAGCCACACTCCCCTATTAT | 60.116 | 47.826 | 0.00 | 0.00 | 0.00 | 1.28 |
2395 | 7784 | 4.109106 | ACCTAGCCACACTCCCCTATTATA | 59.891 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
2396 | 7785 | 4.466726 | CCTAGCCACACTCCCCTATTATAC | 59.533 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2397 | 7786 | 3.248888 | AGCCACACTCCCCTATTATACC | 58.751 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2398 | 7787 | 2.976882 | GCCACACTCCCCTATTATACCA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2399 | 7788 | 3.393278 | GCCACACTCCCCTATTATACCAA | 59.607 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
2400 | 7789 | 4.505039 | GCCACACTCCCCTATTATACCAAG | 60.505 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2419 | 7808 | 5.106317 | ACCAAGCAAAGTTTATACATCGTGG | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2526 | 7915 | 1.207329 | GATTCAGTAGGGTCAACGCCT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
2577 | 7968 | 1.218047 | CCCGACGCCATCTTCTTGA | 59.782 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
2602 | 7993 | 2.363306 | AACTCCAACTGCCATTGACA | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2623 | 8014 | 4.899239 | GACATGCCCCGCCTCGAG | 62.899 | 72.222 | 5.13 | 5.13 | 0.00 | 4.04 |
2665 | 8056 | 4.349503 | ATGTTGCTGCCCTCGCCA | 62.350 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
2868 | 8264 | 0.710567 | CGAGCTTGCGAACTGTACTG | 59.289 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2984 | 8389 | 0.863144 | TCGCTCACCGTAGCAAAAAC | 59.137 | 50.000 | 0.00 | 0.00 | 42.91 | 2.43 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
336 | 349 | 5.728344 | GCTTGCGTCTGTACTGTGTTAAAAA | 60.728 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
337 | 350 | 4.260456 | GCTTGCGTCTGTACTGTGTTAAAA | 60.260 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
338 | 351 | 3.246699 | GCTTGCGTCTGTACTGTGTTAAA | 59.753 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
339 | 352 | 2.798283 | GCTTGCGTCTGTACTGTGTTAA | 59.202 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
340 | 353 | 2.223852 | TGCTTGCGTCTGTACTGTGTTA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
341 | 354 | 1.217882 | GCTTGCGTCTGTACTGTGTT | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
342 | 355 | 0.104120 | TGCTTGCGTCTGTACTGTGT | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
343 | 356 | 0.508641 | GTGCTTGCGTCTGTACTGTG | 59.491 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
344 | 357 | 0.389391 | AGTGCTTGCGTCTGTACTGT | 59.611 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
345 | 358 | 1.063806 | GAGTGCTTGCGTCTGTACTG | 58.936 | 55.000 | 0.00 | 0.00 | 29.71 | 2.74 |
346 | 359 | 0.673985 | TGAGTGCTTGCGTCTGTACT | 59.326 | 50.000 | 0.00 | 0.00 | 32.11 | 2.73 |
347 | 360 | 1.714794 | ATGAGTGCTTGCGTCTGTAC | 58.285 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
348 | 361 | 2.230266 | TGTATGAGTGCTTGCGTCTGTA | 59.770 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
349 | 362 | 1.000843 | TGTATGAGTGCTTGCGTCTGT | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
350 | 363 | 1.713597 | TGTATGAGTGCTTGCGTCTG | 58.286 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
351 | 364 | 2.680312 | ATGTATGAGTGCTTGCGTCT | 57.320 | 45.000 | 0.00 | 0.00 | 0.00 | 4.18 |
352 | 365 | 2.216488 | CGTATGTATGAGTGCTTGCGTC | 59.784 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
353 | 366 | 2.193447 | CGTATGTATGAGTGCTTGCGT | 58.807 | 47.619 | 0.00 | 0.00 | 0.00 | 5.24 |
354 | 367 | 2.034591 | CACGTATGTATGAGTGCTTGCG | 60.035 | 50.000 | 0.00 | 0.00 | 32.01 | 4.85 |
355 | 368 | 3.575858 | CACGTATGTATGAGTGCTTGC | 57.424 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
360 | 373 | 5.561199 | GTGTATGCACGTATGTATGAGTG | 57.439 | 43.478 | 0.00 | 0.00 | 35.75 | 3.51 |
369 | 382 | 8.174737 | ACTATAGGAGTGAGTGTATGCACGTAT | 61.175 | 40.741 | 8.36 | 0.00 | 43.04 | 3.06 |
370 | 383 | 6.910796 | ACTATAGGAGTGAGTGTATGCACGTA | 60.911 | 42.308 | 8.36 | 0.00 | 43.04 | 3.57 |
371 | 384 | 6.151090 | ACTATAGGAGTGAGTGTATGCACGT | 61.151 | 44.000 | 8.36 | 0.00 | 43.04 | 4.49 |
372 | 385 | 4.276183 | ACTATAGGAGTGAGTGTATGCACG | 59.724 | 45.833 | 8.36 | 0.00 | 43.04 | 5.34 |
373 | 386 | 5.776173 | ACTATAGGAGTGAGTGTATGCAC | 57.224 | 43.478 | 5.71 | 5.71 | 40.54 | 4.57 |
374 | 387 | 8.161425 | TGTATACTATAGGAGTGAGTGTATGCA | 58.839 | 37.037 | 4.43 | 0.00 | 39.39 | 3.96 |
375 | 388 | 8.452534 | GTGTATACTATAGGAGTGAGTGTATGC | 58.547 | 40.741 | 4.43 | 0.00 | 39.39 | 3.14 |
376 | 389 | 9.503399 | TGTGTATACTATAGGAGTGAGTGTATG | 57.497 | 37.037 | 4.43 | 0.00 | 39.39 | 2.39 |
377 | 390 | 9.504708 | GTGTGTATACTATAGGAGTGAGTGTAT | 57.495 | 37.037 | 4.43 | 0.00 | 39.39 | 2.29 |
378 | 391 | 8.488668 | TGTGTGTATACTATAGGAGTGAGTGTA | 58.511 | 37.037 | 4.43 | 0.00 | 39.39 | 2.90 |
379 | 392 | 7.282675 | GTGTGTGTATACTATAGGAGTGAGTGT | 59.717 | 40.741 | 4.43 | 0.00 | 39.39 | 3.55 |
380 | 393 | 7.255173 | GGTGTGTGTATACTATAGGAGTGAGTG | 60.255 | 44.444 | 4.43 | 0.00 | 39.39 | 3.51 |
381 | 394 | 6.771749 | GGTGTGTGTATACTATAGGAGTGAGT | 59.228 | 42.308 | 4.43 | 0.00 | 39.39 | 3.41 |
382 | 395 | 6.207025 | GGGTGTGTGTATACTATAGGAGTGAG | 59.793 | 46.154 | 4.43 | 0.00 | 39.39 | 3.51 |
383 | 396 | 6.066690 | GGGTGTGTGTATACTATAGGAGTGA | 58.933 | 44.000 | 4.43 | 0.00 | 39.39 | 3.41 |
384 | 397 | 6.069331 | AGGGTGTGTGTATACTATAGGAGTG | 58.931 | 44.000 | 4.43 | 0.00 | 39.39 | 3.51 |
385 | 398 | 6.277064 | AGGGTGTGTGTATACTATAGGAGT | 57.723 | 41.667 | 4.43 | 0.00 | 42.69 | 3.85 |
386 | 399 | 7.556996 | GGATAGGGTGTGTGTATACTATAGGAG | 59.443 | 44.444 | 4.43 | 0.00 | 0.00 | 3.69 |
387 | 400 | 7.408543 | GGATAGGGTGTGTGTATACTATAGGA | 58.591 | 42.308 | 4.43 | 0.00 | 0.00 | 2.94 |
388 | 401 | 6.318144 | CGGATAGGGTGTGTGTATACTATAGG | 59.682 | 46.154 | 4.43 | 0.00 | 0.00 | 2.57 |
389 | 402 | 6.883217 | ACGGATAGGGTGTGTGTATACTATAG | 59.117 | 42.308 | 4.17 | 0.00 | 0.00 | 1.31 |
390 | 403 | 6.656270 | CACGGATAGGGTGTGTGTATACTATA | 59.344 | 42.308 | 4.17 | 0.00 | 0.00 | 1.31 |
391 | 404 | 5.475909 | CACGGATAGGGTGTGTGTATACTAT | 59.524 | 44.000 | 4.17 | 0.00 | 0.00 | 2.12 |
392 | 405 | 4.823442 | CACGGATAGGGTGTGTGTATACTA | 59.177 | 45.833 | 4.17 | 0.00 | 0.00 | 1.82 |
393 | 406 | 3.635373 | CACGGATAGGGTGTGTGTATACT | 59.365 | 47.826 | 4.17 | 0.00 | 0.00 | 2.12 |
394 | 407 | 3.382546 | ACACGGATAGGGTGTGTGTATAC | 59.617 | 47.826 | 0.00 | 0.00 | 46.22 | 1.47 |
395 | 408 | 3.634504 | ACACGGATAGGGTGTGTGTATA | 58.365 | 45.455 | 0.00 | 0.00 | 46.22 | 1.47 |
396 | 409 | 2.463752 | ACACGGATAGGGTGTGTGTAT | 58.536 | 47.619 | 0.00 | 0.00 | 46.22 | 2.29 |
397 | 410 | 1.927487 | ACACGGATAGGGTGTGTGTA | 58.073 | 50.000 | 0.00 | 0.00 | 46.22 | 2.90 |
398 | 411 | 2.754648 | ACACGGATAGGGTGTGTGT | 58.245 | 52.632 | 0.00 | 0.00 | 46.22 | 3.72 |
404 | 417 | 1.898154 | GTGCTCACACGGATAGGGT | 59.102 | 57.895 | 0.00 | 0.00 | 36.98 | 4.34 |
405 | 418 | 4.835927 | GTGCTCACACGGATAGGG | 57.164 | 61.111 | 0.00 | 0.00 | 36.98 | 3.53 |
413 | 426 | 1.214062 | CTCTCGGAGGTGCTCACAC | 59.786 | 63.158 | 4.96 | 0.00 | 46.66 | 3.82 |
414 | 427 | 1.074951 | TCTCTCGGAGGTGCTCACA | 59.925 | 57.895 | 4.96 | 0.00 | 31.08 | 3.58 |
415 | 428 | 0.963355 | AGTCTCTCGGAGGTGCTCAC | 60.963 | 60.000 | 4.96 | 0.00 | 31.08 | 3.51 |
416 | 429 | 0.962855 | CAGTCTCTCGGAGGTGCTCA | 60.963 | 60.000 | 4.96 | 0.00 | 31.08 | 4.26 |
417 | 430 | 0.678366 | TCAGTCTCTCGGAGGTGCTC | 60.678 | 60.000 | 4.96 | 0.00 | 0.00 | 4.26 |
418 | 431 | 0.679640 | CTCAGTCTCTCGGAGGTGCT | 60.680 | 60.000 | 4.96 | 0.00 | 35.32 | 4.40 |
419 | 432 | 0.963355 | ACTCAGTCTCTCGGAGGTGC | 60.963 | 60.000 | 4.96 | 0.00 | 41.46 | 5.01 |
420 | 433 | 1.091537 | GACTCAGTCTCTCGGAGGTG | 58.908 | 60.000 | 4.96 | 0.00 | 41.46 | 4.00 |
421 | 434 | 0.391927 | CGACTCAGTCTCTCGGAGGT | 60.392 | 60.000 | 2.61 | 0.00 | 41.46 | 3.85 |
422 | 435 | 2.389386 | CGACTCAGTCTCTCGGAGG | 58.611 | 63.158 | 2.61 | 0.00 | 41.46 | 4.30 |
426 | 439 | 1.300481 | TATGCCGACTCAGTCTCTCG | 58.700 | 55.000 | 2.61 | 0.00 | 0.00 | 4.04 |
427 | 440 | 2.881513 | TGATATGCCGACTCAGTCTCTC | 59.118 | 50.000 | 2.61 | 0.00 | 0.00 | 3.20 |
428 | 441 | 2.937519 | TGATATGCCGACTCAGTCTCT | 58.062 | 47.619 | 2.61 | 0.00 | 0.00 | 3.10 |
429 | 442 | 3.505680 | AGATGATATGCCGACTCAGTCTC | 59.494 | 47.826 | 2.61 | 0.00 | 0.00 | 3.36 |
430 | 443 | 3.495331 | AGATGATATGCCGACTCAGTCT | 58.505 | 45.455 | 2.61 | 0.00 | 0.00 | 3.24 |
431 | 444 | 3.932545 | AGATGATATGCCGACTCAGTC | 57.067 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
432 | 445 | 3.638627 | TCAAGATGATATGCCGACTCAGT | 59.361 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
433 | 446 | 4.248691 | TCAAGATGATATGCCGACTCAG | 57.751 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
434 | 447 | 4.879197 | ATCAAGATGATATGCCGACTCA | 57.121 | 40.909 | 0.00 | 0.00 | 34.88 | 3.41 |
435 | 448 | 7.840342 | ATTTATCAAGATGATATGCCGACTC | 57.160 | 36.000 | 1.21 | 0.00 | 38.94 | 3.36 |
436 | 449 | 7.879677 | TGAATTTATCAAGATGATATGCCGACT | 59.120 | 33.333 | 1.21 | 0.00 | 38.94 | 4.18 |
437 | 450 | 8.032952 | TGAATTTATCAAGATGATATGCCGAC | 57.967 | 34.615 | 1.21 | 0.00 | 38.94 | 4.79 |
438 | 451 | 7.335171 | CCTGAATTTATCAAGATGATATGCCGA | 59.665 | 37.037 | 1.21 | 0.00 | 38.94 | 5.54 |
439 | 452 | 7.335171 | TCCTGAATTTATCAAGATGATATGCCG | 59.665 | 37.037 | 1.21 | 0.00 | 38.94 | 5.69 |
440 | 453 | 8.571461 | TCCTGAATTTATCAAGATGATATGCC | 57.429 | 34.615 | 1.21 | 0.00 | 38.94 | 4.40 |
447 | 460 | 9.338291 | CGCATTATTCCTGAATTTATCAAGATG | 57.662 | 33.333 | 0.00 | 0.00 | 37.67 | 2.90 |
448 | 461 | 9.288576 | TCGCATTATTCCTGAATTTATCAAGAT | 57.711 | 29.630 | 0.00 | 0.00 | 37.67 | 2.40 |
449 | 462 | 8.675705 | TCGCATTATTCCTGAATTTATCAAGA | 57.324 | 30.769 | 0.00 | 0.00 | 37.67 | 3.02 |
450 | 463 | 9.390795 | CTTCGCATTATTCCTGAATTTATCAAG | 57.609 | 33.333 | 0.00 | 0.00 | 37.67 | 3.02 |
451 | 464 | 9.119418 | TCTTCGCATTATTCCTGAATTTATCAA | 57.881 | 29.630 | 0.00 | 0.00 | 37.67 | 2.57 |
452 | 465 | 8.559536 | GTCTTCGCATTATTCCTGAATTTATCA | 58.440 | 33.333 | 0.00 | 0.00 | 36.38 | 2.15 |
453 | 466 | 8.017946 | GGTCTTCGCATTATTCCTGAATTTATC | 58.982 | 37.037 | 0.00 | 0.00 | 32.50 | 1.75 |
454 | 467 | 7.502226 | TGGTCTTCGCATTATTCCTGAATTTAT | 59.498 | 33.333 | 0.00 | 0.00 | 32.50 | 1.40 |
455 | 468 | 6.826231 | TGGTCTTCGCATTATTCCTGAATTTA | 59.174 | 34.615 | 0.00 | 0.00 | 32.50 | 1.40 |
456 | 469 | 5.652014 | TGGTCTTCGCATTATTCCTGAATTT | 59.348 | 36.000 | 0.00 | 0.00 | 32.50 | 1.82 |
457 | 470 | 5.192927 | TGGTCTTCGCATTATTCCTGAATT | 58.807 | 37.500 | 0.00 | 0.00 | 32.50 | 2.17 |
458 | 471 | 4.780815 | TGGTCTTCGCATTATTCCTGAAT | 58.219 | 39.130 | 0.00 | 0.00 | 34.93 | 2.57 |
459 | 472 | 4.214986 | TGGTCTTCGCATTATTCCTGAA | 57.785 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
460 | 473 | 3.904800 | TGGTCTTCGCATTATTCCTGA | 57.095 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
461 | 474 | 4.024556 | GTCATGGTCTTCGCATTATTCCTG | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
462 | 475 | 4.130118 | GTCATGGTCTTCGCATTATTCCT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
463 | 476 | 4.130118 | AGTCATGGTCTTCGCATTATTCC | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
464 | 477 | 5.294306 | TGAAGTCATGGTCTTCGCATTATTC | 59.706 | 40.000 | 18.97 | 0.00 | 42.68 | 1.75 |
465 | 478 | 5.185454 | TGAAGTCATGGTCTTCGCATTATT | 58.815 | 37.500 | 18.97 | 0.00 | 42.68 | 1.40 |
466 | 479 | 4.769688 | TGAAGTCATGGTCTTCGCATTAT | 58.230 | 39.130 | 18.97 | 0.00 | 42.68 | 1.28 |
467 | 480 | 4.200838 | TGAAGTCATGGTCTTCGCATTA | 57.799 | 40.909 | 18.97 | 6.06 | 42.68 | 1.90 |
468 | 481 | 3.057969 | TGAAGTCATGGTCTTCGCATT | 57.942 | 42.857 | 18.97 | 0.00 | 42.68 | 3.56 |
469 | 482 | 2.744202 | GTTGAAGTCATGGTCTTCGCAT | 59.256 | 45.455 | 18.97 | 0.00 | 42.68 | 4.73 |
470 | 483 | 2.143122 | GTTGAAGTCATGGTCTTCGCA | 58.857 | 47.619 | 18.97 | 10.63 | 42.68 | 5.10 |
471 | 484 | 1.464997 | GGTTGAAGTCATGGTCTTCGC | 59.535 | 52.381 | 18.97 | 15.51 | 42.68 | 4.70 |
472 | 485 | 2.076863 | GGGTTGAAGTCATGGTCTTCG | 58.923 | 52.381 | 18.97 | 0.00 | 42.68 | 3.79 |
473 | 486 | 3.077359 | CAGGGTTGAAGTCATGGTCTTC | 58.923 | 50.000 | 18.09 | 18.09 | 40.89 | 2.87 |
474 | 487 | 2.711009 | TCAGGGTTGAAGTCATGGTCTT | 59.289 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
475 | 488 | 2.338809 | TCAGGGTTGAAGTCATGGTCT | 58.661 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
476 | 489 | 2.859165 | TCAGGGTTGAAGTCATGGTC | 57.141 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
477 | 490 | 2.291153 | CCATCAGGGTTGAAGTCATGGT | 60.291 | 50.000 | 0.00 | 0.00 | 36.78 | 3.55 |
478 | 491 | 2.025981 | TCCATCAGGGTTGAAGTCATGG | 60.026 | 50.000 | 0.00 | 0.00 | 36.78 | 3.66 |
479 | 492 | 3.012518 | GTCCATCAGGGTTGAAGTCATG | 58.987 | 50.000 | 0.00 | 0.00 | 36.78 | 3.07 |
480 | 493 | 2.915604 | AGTCCATCAGGGTTGAAGTCAT | 59.084 | 45.455 | 0.00 | 0.00 | 36.78 | 3.06 |
481 | 494 | 2.038952 | CAGTCCATCAGGGTTGAAGTCA | 59.961 | 50.000 | 0.00 | 0.00 | 36.78 | 3.41 |
482 | 495 | 2.616510 | CCAGTCCATCAGGGTTGAAGTC | 60.617 | 54.545 | 0.00 | 0.00 | 36.78 | 3.01 |
483 | 496 | 1.352352 | CCAGTCCATCAGGGTTGAAGT | 59.648 | 52.381 | 0.00 | 0.00 | 36.78 | 3.01 |
484 | 497 | 1.340405 | CCCAGTCCATCAGGGTTGAAG | 60.340 | 57.143 | 0.00 | 0.00 | 37.98 | 3.02 |
485 | 498 | 0.698238 | CCCAGTCCATCAGGGTTGAA | 59.302 | 55.000 | 0.00 | 0.00 | 37.98 | 2.69 |
486 | 499 | 1.207488 | CCCCAGTCCATCAGGGTTGA | 61.207 | 60.000 | 0.00 | 0.00 | 40.75 | 3.18 |
487 | 500 | 1.207488 | TCCCCAGTCCATCAGGGTTG | 61.207 | 60.000 | 0.00 | 0.00 | 40.75 | 3.77 |
488 | 501 | 0.253820 | ATCCCCAGTCCATCAGGGTT | 60.254 | 55.000 | 0.00 | 0.00 | 40.75 | 4.11 |
489 | 502 | 0.647738 | TATCCCCAGTCCATCAGGGT | 59.352 | 55.000 | 0.00 | 0.00 | 40.75 | 4.34 |
490 | 503 | 1.912043 | GATATCCCCAGTCCATCAGGG | 59.088 | 57.143 | 0.00 | 0.00 | 41.84 | 4.45 |
491 | 504 | 2.304180 | GTGATATCCCCAGTCCATCAGG | 59.696 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
492 | 505 | 2.304180 | GGTGATATCCCCAGTCCATCAG | 59.696 | 54.545 | 0.00 | 0.00 | 0.00 | 2.90 |
493 | 506 | 2.338809 | GGTGATATCCCCAGTCCATCA | 58.661 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
494 | 507 | 1.276421 | CGGTGATATCCCCAGTCCATC | 59.724 | 57.143 | 5.02 | 0.00 | 0.00 | 3.51 |
495 | 508 | 1.352083 | CGGTGATATCCCCAGTCCAT | 58.648 | 55.000 | 5.02 | 0.00 | 0.00 | 3.41 |
496 | 509 | 0.031515 | ACGGTGATATCCCCAGTCCA | 60.032 | 55.000 | 5.02 | 0.00 | 0.00 | 4.02 |
497 | 510 | 0.680061 | GACGGTGATATCCCCAGTCC | 59.320 | 60.000 | 13.95 | 2.73 | 0.00 | 3.85 |
498 | 511 | 0.680061 | GGACGGTGATATCCCCAGTC | 59.320 | 60.000 | 15.54 | 15.54 | 0.00 | 3.51 |
499 | 512 | 2.836020 | GGACGGTGATATCCCCAGT | 58.164 | 57.895 | 5.02 | 3.58 | 0.00 | 4.00 |
504 | 517 | 2.561858 | GGTTAGAGGGACGGTGATATCC | 59.438 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
505 | 518 | 3.228453 | TGGTTAGAGGGACGGTGATATC | 58.772 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
506 | 519 | 3.323774 | TGGTTAGAGGGACGGTGATAT | 57.676 | 47.619 | 0.00 | 0.00 | 0.00 | 1.63 |
507 | 520 | 2.832643 | TGGTTAGAGGGACGGTGATA | 57.167 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
508 | 521 | 2.040178 | GATGGTTAGAGGGACGGTGAT | 58.960 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
509 | 522 | 1.006758 | AGATGGTTAGAGGGACGGTGA | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
510 | 523 | 1.486211 | AGATGGTTAGAGGGACGGTG | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
511 | 524 | 2.424523 | CCTAGATGGTTAGAGGGACGGT | 60.425 | 54.545 | 0.00 | 0.00 | 0.00 | 4.83 |
512 | 525 | 2.240279 | CCTAGATGGTTAGAGGGACGG | 58.760 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
524 | 537 | 1.269831 | GCCTGTAGCGAACCTAGATGG | 60.270 | 57.143 | 0.00 | 0.00 | 42.93 | 3.51 |
525 | 538 | 2.141535 | GCCTGTAGCGAACCTAGATG | 57.858 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
531 | 544 | 3.376922 | AAGGTCTGCCTGTAGCGAACC | 62.377 | 57.143 | 0.00 | 0.00 | 46.33 | 3.62 |
532 | 545 | 0.037232 | AAGGTCTGCCTGTAGCGAAC | 60.037 | 55.000 | 0.00 | 0.00 | 46.33 | 3.95 |
533 | 546 | 0.685097 | AAAGGTCTGCCTGTAGCGAA | 59.315 | 50.000 | 0.00 | 0.00 | 46.33 | 4.70 |
534 | 547 | 0.685097 | AAAAGGTCTGCCTGTAGCGA | 59.315 | 50.000 | 0.00 | 0.00 | 46.33 | 4.93 |
535 | 548 | 1.523758 | AAAAAGGTCTGCCTGTAGCG | 58.476 | 50.000 | 0.00 | 0.00 | 46.33 | 4.26 |
554 | 567 | 0.317436 | CCTGCAGCGCACGTTAAAAA | 60.317 | 50.000 | 11.47 | 0.00 | 33.79 | 1.94 |
555 | 568 | 1.281353 | CCTGCAGCGCACGTTAAAA | 59.719 | 52.632 | 11.47 | 0.00 | 33.79 | 1.52 |
556 | 569 | 2.942879 | CCTGCAGCGCACGTTAAA | 59.057 | 55.556 | 11.47 | 0.00 | 33.79 | 1.52 |
557 | 570 | 3.722295 | GCCTGCAGCGCACGTTAA | 61.722 | 61.111 | 18.68 | 0.00 | 33.79 | 2.01 |
566 | 579 | 4.129737 | TACGAGTCCGCCTGCAGC | 62.130 | 66.667 | 8.66 | 2.87 | 39.95 | 5.25 |
567 | 580 | 1.374343 | TACTACGAGTCCGCCTGCAG | 61.374 | 60.000 | 6.78 | 6.78 | 39.95 | 4.41 |
568 | 581 | 1.374343 | CTACTACGAGTCCGCCTGCA | 61.374 | 60.000 | 0.00 | 0.00 | 39.95 | 4.41 |
569 | 582 | 1.094073 | TCTACTACGAGTCCGCCTGC | 61.094 | 60.000 | 0.00 | 0.00 | 39.95 | 4.85 |
570 | 583 | 0.938713 | CTCTACTACGAGTCCGCCTG | 59.061 | 60.000 | 0.00 | 0.00 | 39.95 | 4.85 |
573 | 586 | 1.094073 | TGCCTCTACTACGAGTCCGC | 61.094 | 60.000 | 0.00 | 0.00 | 39.95 | 5.54 |
580 | 593 | 4.449068 | CCATAGCAATTTGCCTCTACTACG | 59.551 | 45.833 | 17.51 | 0.00 | 46.52 | 3.51 |
694 | 3722 | 2.878580 | ACGACATGCGGACGTAATTAA | 58.121 | 42.857 | 12.85 | 0.00 | 46.49 | 1.40 |
704 | 3732 | 1.931172 | CTAACCCTAAACGACATGCGG | 59.069 | 52.381 | 12.85 | 0.00 | 46.49 | 5.69 |
905 | 3989 | 3.696426 | GCGAGCGATGGATGCGAC | 61.696 | 66.667 | 0.00 | 0.00 | 37.44 | 5.19 |
1497 | 4602 | 4.394712 | CCGGAGCCGTGCTTCCTT | 62.395 | 66.667 | 8.25 | 0.00 | 39.88 | 3.36 |
1632 | 4743 | 1.675219 | GCGGAACTGGTCCTTGGTA | 59.325 | 57.895 | 10.54 | 0.00 | 45.36 | 3.25 |
1689 | 4800 | 1.216444 | GTGCTCTGTGATGGCTCGA | 59.784 | 57.895 | 0.00 | 0.00 | 0.00 | 4.04 |
1866 | 4977 | 2.574929 | CCGTAGCAAGCCCGTGTA | 59.425 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
1867 | 4978 | 4.388499 | CCCGTAGCAAGCCCGTGT | 62.388 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
2007 | 5118 | 0.443869 | CGTTGCCACCGATCTTCTTG | 59.556 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2139 | 5250 | 6.322491 | CCTAAAGAAAAATAAACAGAGCCCG | 58.678 | 40.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2196 | 7584 | 7.648142 | AGTGATCAAAATTGTGTATTCGTGTT | 58.352 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
2197 | 7585 | 7.202016 | AGTGATCAAAATTGTGTATTCGTGT | 57.798 | 32.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2233 | 7621 | 2.843701 | ACTGAGACTTTGCAAGACTGG | 58.156 | 47.619 | 0.00 | 0.00 | 33.75 | 4.00 |
2240 | 7628 | 8.737168 | ATATTAGCATTAACTGAGACTTTGCA | 57.263 | 30.769 | 0.00 | 0.00 | 0.00 | 4.08 |
2241 | 7629 | 8.286097 | GGATATTAGCATTAACTGAGACTTTGC | 58.714 | 37.037 | 0.00 | 0.00 | 0.00 | 3.68 |
2242 | 7630 | 8.491152 | CGGATATTAGCATTAACTGAGACTTTG | 58.509 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2243 | 7631 | 8.204836 | ACGGATATTAGCATTAACTGAGACTTT | 58.795 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2252 | 7641 | 8.764524 | AAGATCTCACGGATATTAGCATTAAC | 57.235 | 34.615 | 0.00 | 0.00 | 34.53 | 2.01 |
2264 | 7653 | 3.056107 | TCAACGGAAAAGATCTCACGGAT | 60.056 | 43.478 | 0.00 | 0.00 | 37.37 | 4.18 |
2265 | 7654 | 2.297880 | TCAACGGAAAAGATCTCACGGA | 59.702 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2278 | 7667 | 0.675083 | TTACACGGCTCTCAACGGAA | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2279 | 7668 | 0.675083 | TTTACACGGCTCTCAACGGA | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2280 | 7669 | 1.504359 | TTTTACACGGCTCTCAACGG | 58.496 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2281 | 7670 | 3.806316 | AATTTTACACGGCTCTCAACG | 57.194 | 42.857 | 0.00 | 0.00 | 0.00 | 4.10 |
2282 | 7671 | 8.515473 | AAATAAAATTTTACACGGCTCTCAAC | 57.485 | 30.769 | 12.74 | 0.00 | 0.00 | 3.18 |
2309 | 7698 | 7.993821 | TGCGAGAGAGAATAAGAAAATACTG | 57.006 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2317 | 7706 | 7.043961 | ACATTACATGCGAGAGAGAATAAGA | 57.956 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2318 | 7707 | 6.920210 | TGACATTACATGCGAGAGAGAATAAG | 59.080 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2321 | 7710 | 5.268118 | TGACATTACATGCGAGAGAGAAT | 57.732 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2326 | 7715 | 4.614946 | TCAGATGACATTACATGCGAGAG | 58.385 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2335 | 7724 | 8.659925 | ATCAAGTCTCAATCAGATGACATTAC | 57.340 | 34.615 | 2.98 | 0.00 | 32.08 | 1.89 |
2352 | 7741 | 8.951243 | GCTAGGTTTTGAGATTTAATCAAGTCT | 58.049 | 33.333 | 7.74 | 0.00 | 37.91 | 3.24 |
2353 | 7742 | 8.184848 | GGCTAGGTTTTGAGATTTAATCAAGTC | 58.815 | 37.037 | 7.74 | 0.00 | 37.91 | 3.01 |
2354 | 7743 | 7.669722 | TGGCTAGGTTTTGAGATTTAATCAAGT | 59.330 | 33.333 | 7.74 | 0.00 | 37.91 | 3.16 |
2355 | 7744 | 7.970614 | GTGGCTAGGTTTTGAGATTTAATCAAG | 59.029 | 37.037 | 7.74 | 0.00 | 37.91 | 3.02 |
2356 | 7745 | 7.450014 | TGTGGCTAGGTTTTGAGATTTAATCAA | 59.550 | 33.333 | 7.74 | 0.00 | 34.93 | 2.57 |
2357 | 7746 | 6.945435 | TGTGGCTAGGTTTTGAGATTTAATCA | 59.055 | 34.615 | 7.74 | 0.00 | 0.00 | 2.57 |
2358 | 7747 | 7.121315 | AGTGTGGCTAGGTTTTGAGATTTAATC | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
2359 | 7748 | 6.948309 | AGTGTGGCTAGGTTTTGAGATTTAAT | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2360 | 7749 | 6.303839 | AGTGTGGCTAGGTTTTGAGATTTAA | 58.696 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2361 | 7750 | 5.876357 | AGTGTGGCTAGGTTTTGAGATTTA | 58.124 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2362 | 7751 | 4.729868 | AGTGTGGCTAGGTTTTGAGATTT | 58.270 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2363 | 7752 | 4.327680 | GAGTGTGGCTAGGTTTTGAGATT | 58.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2364 | 7753 | 3.307762 | GGAGTGTGGCTAGGTTTTGAGAT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
2365 | 7754 | 2.038557 | GGAGTGTGGCTAGGTTTTGAGA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2366 | 7755 | 2.427506 | GGAGTGTGGCTAGGTTTTGAG | 58.572 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2367 | 7756 | 1.073284 | GGGAGTGTGGCTAGGTTTTGA | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2368 | 7757 | 1.534729 | GGGAGTGTGGCTAGGTTTTG | 58.465 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2369 | 7758 | 0.404426 | GGGGAGTGTGGCTAGGTTTT | 59.596 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2370 | 7759 | 0.475828 | AGGGGAGTGTGGCTAGGTTT | 60.476 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2371 | 7760 | 0.416231 | TAGGGGAGTGTGGCTAGGTT | 59.584 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2372 | 7761 | 0.642710 | ATAGGGGAGTGTGGCTAGGT | 59.357 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2373 | 7762 | 1.807814 | AATAGGGGAGTGTGGCTAGG | 58.192 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2374 | 7763 | 4.466726 | GGTATAATAGGGGAGTGTGGCTAG | 59.533 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
2375 | 7764 | 4.140639 | TGGTATAATAGGGGAGTGTGGCTA | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 3.93 |
2376 | 7765 | 3.248888 | GGTATAATAGGGGAGTGTGGCT | 58.751 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
2377 | 7766 | 2.976882 | TGGTATAATAGGGGAGTGTGGC | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2378 | 7767 | 4.505039 | GCTTGGTATAATAGGGGAGTGTGG | 60.505 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2379 | 7768 | 4.102524 | TGCTTGGTATAATAGGGGAGTGTG | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
2380 | 7769 | 4.303794 | TGCTTGGTATAATAGGGGAGTGT | 58.696 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
2381 | 7770 | 4.974645 | TGCTTGGTATAATAGGGGAGTG | 57.025 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2382 | 7771 | 5.432060 | ACTTTGCTTGGTATAATAGGGGAGT | 59.568 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2383 | 7772 | 5.941788 | ACTTTGCTTGGTATAATAGGGGAG | 58.058 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2384 | 7773 | 5.987019 | ACTTTGCTTGGTATAATAGGGGA | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 4.81 |
2385 | 7774 | 8.706322 | ATAAACTTTGCTTGGTATAATAGGGG | 57.294 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
2391 | 7780 | 9.386010 | ACGATGTATAAACTTTGCTTGGTATAA | 57.614 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
2392 | 7781 | 8.822855 | CACGATGTATAAACTTTGCTTGGTATA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2393 | 7782 | 7.201696 | CCACGATGTATAAACTTTGCTTGGTAT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2394 | 7783 | 6.092944 | CCACGATGTATAAACTTTGCTTGGTA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 3.25 |
2395 | 7784 | 5.106317 | CCACGATGTATAAACTTTGCTTGGT | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2396 | 7785 | 5.123186 | TCCACGATGTATAAACTTTGCTTGG | 59.877 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2397 | 7786 | 6.176975 | TCCACGATGTATAAACTTTGCTTG | 57.823 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
2398 | 7787 | 5.354234 | CCTCCACGATGTATAAACTTTGCTT | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2399 | 7788 | 4.876107 | CCTCCACGATGTATAAACTTTGCT | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
2400 | 7789 | 4.634443 | ACCTCCACGATGTATAAACTTTGC | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
2431 | 7820 | 3.616821 | CGCTGACATCGTTATTTTCAGGA | 59.383 | 43.478 | 0.00 | 0.00 | 35.28 | 3.86 |
2432 | 7821 | 3.785505 | GCGCTGACATCGTTATTTTCAGG | 60.786 | 47.826 | 0.00 | 0.00 | 35.28 | 3.86 |
2442 | 7831 | 2.105128 | GCCTAGCGCTGACATCGT | 59.895 | 61.111 | 22.90 | 0.00 | 0.00 | 3.73 |
2491 | 7880 | 4.511246 | ATCGGGTGGCTGGCATGG | 62.511 | 66.667 | 7.33 | 0.00 | 0.00 | 3.66 |
2526 | 7915 | 0.388006 | CAGATCGTGCGGTGTGTACA | 60.388 | 55.000 | 0.00 | 0.00 | 31.89 | 2.90 |
2577 | 7968 | 4.405358 | TCAATGGCAGTTGGAGTTTTTCTT | 59.595 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
2602 | 7993 | 3.757248 | GAGGCGGGGCATGTCGATT | 62.757 | 63.158 | 8.88 | 0.00 | 0.00 | 3.34 |
2628 | 8019 | 2.482333 | CGAGACGAATCGAGGGGCT | 61.482 | 63.158 | 10.55 | 0.00 | 45.56 | 5.19 |
2855 | 8251 | 1.198408 | CCGAGTACAGTACAGTTCGCA | 59.802 | 52.381 | 13.37 | 0.00 | 0.00 | 5.10 |
2896 | 8292 | 1.161563 | TTTTGCTCGACCAACGGACC | 61.162 | 55.000 | 0.00 | 0.00 | 42.82 | 4.46 |
3033 | 8441 | 0.737367 | CGACATGCTGACGATGGTGT | 60.737 | 55.000 | 0.00 | 0.00 | 37.72 | 4.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.