Multiple sequence alignment - TraesCS6B01G384600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G384600 chr6B 100.000 2402 0 0 1 2402 659588140 659590541 0.000000e+00 4436.0
1 TraesCS6B01G384600 chr6B 80.897 1026 151 31 399 1405 550211057 550212056 0.000000e+00 767.0
2 TraesCS6B01G384600 chr6B 80.386 933 153 23 454 1370 550273039 550273957 0.000000e+00 682.0
3 TraesCS6B01G384600 chr6B 79.836 853 129 31 568 1402 550269954 550270781 1.240000e-162 582.0
4 TraesCS6B01G384600 chr6B 87.311 331 29 7 2068 2389 659609894 659610220 1.360000e-97 366.0
5 TraesCS6B01G384600 chr6B 92.000 250 20 0 1409 1658 347227139 347227388 3.800000e-93 351.0
6 TraesCS6B01G384600 chr6B 88.889 216 17 3 1790 2005 659609517 659609725 2.370000e-65 259.0
7 TraesCS6B01G384600 chr6D 89.585 1037 84 13 368 1403 436343876 436344889 0.000000e+00 1295.0
8 TraesCS6B01G384600 chr6D 87.445 908 78 12 500 1403 436454404 436453529 0.000000e+00 1013.0
9 TraesCS6B01G384600 chr6D 86.028 773 63 25 1660 2402 436376298 436377055 0.000000e+00 787.0
10 TraesCS6B01G384600 chr6D 80.707 1047 152 33 376 1404 365449086 365450100 0.000000e+00 769.0
11 TraesCS6B01G384600 chr6D 93.033 244 17 0 1417 1660 450269581 450269338 8.170000e-95 357.0
12 TraesCS6B01G384600 chr6D 96.296 54 2 0 1669 1722 436344897 436344950 3.290000e-14 89.8
13 TraesCS6B01G384600 chr1A 86.702 1128 122 12 285 1403 511621522 511620414 0.000000e+00 1227.0
14 TraesCS6B01G384600 chr1A 87.745 204 16 7 1786 1988 511620402 511620207 1.860000e-56 230.0
15 TraesCS6B01G384600 chr1A 90.909 132 12 0 2014 2145 511619624 511619493 6.820000e-41 178.0
16 TraesCS6B01G384600 chrUn 86.996 669 64 12 366 1029 7334889 7335539 0.000000e+00 732.0
17 TraesCS6B01G384600 chrUn 81.166 223 30 6 1873 2094 7335573 7335784 4.110000e-38 169.0
18 TraesCS6B01G384600 chr1B 86.996 669 64 12 366 1029 560313485 560312835 0.000000e+00 732.0
19 TraesCS6B01G384600 chr1B 81.166 223 30 6 1873 2094 560312801 560312590 4.110000e-38 169.0
20 TraesCS6B01G384600 chr6A 79.924 1056 155 39 379 1406 506489652 506490678 0.000000e+00 723.0
21 TraesCS6B01G384600 chr6A 79.787 1034 163 30 372 1386 506485192 506486198 0.000000e+00 710.0
22 TraesCS6B01G384600 chr6A 83.734 707 90 19 704 1403 506507417 506508105 0.000000e+00 645.0
23 TraesCS6B01G384600 chr6A 86.250 480 51 7 429 907 584675830 584675365 7.660000e-140 507.0
24 TraesCS6B01G384600 chr1D 89.873 474 35 9 623 1088 414884064 414883596 4.420000e-167 597.0
25 TraesCS6B01G384600 chr1D 82.514 732 58 18 1718 2402 414883167 414882459 1.600000e-161 579.0
26 TraesCS6B01G384600 chr1D 88.028 284 33 1 1129 1411 414883595 414883312 3.830000e-88 335.0
27 TraesCS6B01G384600 chr2D 93.033 244 17 0 1417 1660 541547537 541547294 8.170000e-95 357.0
28 TraesCS6B01G384600 chr5B 91.765 255 19 2 1407 1660 198381778 198382031 1.060000e-93 353.0
29 TraesCS6B01G384600 chr4A 92.593 243 18 0 1418 1660 615435279 615435037 1.370000e-92 350.0
30 TraesCS6B01G384600 chr4A 90.347 259 25 0 1402 1660 707022287 707022029 8.220000e-90 340.0
31 TraesCS6B01G384600 chr3D 91.120 259 22 1 1403 1660 563448920 563449178 1.370000e-92 350.0
32 TraesCS6B01G384600 chr3D 90.076 262 24 1 1401 1660 269465483 269465744 2.960000e-89 339.0
33 TraesCS6B01G384600 chr7D 90.038 261 22 2 1400 1660 369463267 369463523 3.830000e-88 335.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G384600 chr6B 659588140 659590541 2401 False 4436.000000 4436 100.0000 1 2402 1 chr6B.!!$F3 2401
1 TraesCS6B01G384600 chr6B 550211057 550212056 999 False 767.000000 767 80.8970 399 1405 1 chr6B.!!$F2 1006
2 TraesCS6B01G384600 chr6B 550269954 550273957 4003 False 632.000000 682 80.1110 454 1402 2 chr6B.!!$F4 948
3 TraesCS6B01G384600 chr6B 659609517 659610220 703 False 312.500000 366 88.1000 1790 2389 2 chr6B.!!$F5 599
4 TraesCS6B01G384600 chr6D 436453529 436454404 875 True 1013.000000 1013 87.4450 500 1403 1 chr6D.!!$R1 903
5 TraesCS6B01G384600 chr6D 436376298 436377055 757 False 787.000000 787 86.0280 1660 2402 1 chr6D.!!$F2 742
6 TraesCS6B01G384600 chr6D 365449086 365450100 1014 False 769.000000 769 80.7070 376 1404 1 chr6D.!!$F1 1028
7 TraesCS6B01G384600 chr6D 436343876 436344950 1074 False 692.400000 1295 92.9405 368 1722 2 chr6D.!!$F3 1354
8 TraesCS6B01G384600 chr1A 511619493 511621522 2029 True 545.000000 1227 88.4520 285 2145 3 chr1A.!!$R1 1860
9 TraesCS6B01G384600 chrUn 7334889 7335784 895 False 450.500000 732 84.0810 366 2094 2 chrUn.!!$F1 1728
10 TraesCS6B01G384600 chr1B 560312590 560313485 895 True 450.500000 732 84.0810 366 2094 2 chr1B.!!$R1 1728
11 TraesCS6B01G384600 chr6A 506485192 506490678 5486 False 716.500000 723 79.8555 372 1406 2 chr6A.!!$F2 1034
12 TraesCS6B01G384600 chr6A 506507417 506508105 688 False 645.000000 645 83.7340 704 1403 1 chr6A.!!$F1 699
13 TraesCS6B01G384600 chr1D 414882459 414884064 1605 True 503.666667 597 86.8050 623 2402 3 chr1D.!!$R1 1779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 4161 0.035458 TCCACACACACACACACACA 59.965 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 9564 0.97504 AGCTCAATCCCACTCTCGCT 60.975 55.0 0.0 0.0 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.730733 GATGCCGATCGAGCTCCA 59.269 61.111 18.66 5.80 0.00 3.86
29 30 1.068083 GATGCCGATCGAGCTCCAA 59.932 57.895 18.66 2.87 0.00 3.53
30 31 0.530650 GATGCCGATCGAGCTCCAAA 60.531 55.000 18.66 2.49 0.00 3.28
31 32 0.531532 ATGCCGATCGAGCTCCAAAG 60.532 55.000 18.66 0.00 0.00 2.77
32 33 1.141881 GCCGATCGAGCTCCAAAGA 59.858 57.895 18.66 0.00 0.00 2.52
33 34 1.148759 GCCGATCGAGCTCCAAAGAC 61.149 60.000 18.66 0.00 0.00 3.01
34 35 0.457851 CCGATCGAGCTCCAAAGACT 59.542 55.000 18.66 0.00 0.00 3.24
35 36 1.676529 CCGATCGAGCTCCAAAGACTA 59.323 52.381 18.66 0.00 0.00 2.59
36 37 2.099263 CCGATCGAGCTCCAAAGACTAA 59.901 50.000 18.66 0.00 0.00 2.24
37 38 3.367607 CGATCGAGCTCCAAAGACTAAG 58.632 50.000 10.26 0.00 0.00 2.18
38 39 2.656560 TCGAGCTCCAAAGACTAAGC 57.343 50.000 8.47 0.00 34.95 3.09
39 40 1.204941 TCGAGCTCCAAAGACTAAGCC 59.795 52.381 8.47 0.00 35.32 4.35
40 41 1.740718 CGAGCTCCAAAGACTAAGCCC 60.741 57.143 8.47 0.00 35.32 5.19
41 42 0.621082 AGCTCCAAAGACTAAGCCCC 59.379 55.000 0.00 0.00 35.32 5.80
42 43 0.394488 GCTCCAAAGACTAAGCCCCC 60.394 60.000 0.00 0.00 0.00 5.40
43 44 0.991920 CTCCAAAGACTAAGCCCCCA 59.008 55.000 0.00 0.00 0.00 4.96
44 45 1.354368 CTCCAAAGACTAAGCCCCCAA 59.646 52.381 0.00 0.00 0.00 4.12
45 46 1.354368 TCCAAAGACTAAGCCCCCAAG 59.646 52.381 0.00 0.00 0.00 3.61
46 47 1.354368 CCAAAGACTAAGCCCCCAAGA 59.646 52.381 0.00 0.00 0.00 3.02
47 48 2.619074 CCAAAGACTAAGCCCCCAAGAG 60.619 54.545 0.00 0.00 0.00 2.85
48 49 1.290134 AAGACTAAGCCCCCAAGAGG 58.710 55.000 0.00 0.00 0.00 3.69
61 62 3.513909 CCAAGAGGGAATATGATGCCA 57.486 47.619 0.00 0.00 40.01 4.92
62 63 3.836146 CCAAGAGGGAATATGATGCCAA 58.164 45.455 0.00 0.00 40.01 4.52
63 64 3.825014 CCAAGAGGGAATATGATGCCAAG 59.175 47.826 0.00 0.00 40.01 3.61
64 65 3.803186 AGAGGGAATATGATGCCAAGG 57.197 47.619 0.00 0.00 32.31 3.61
65 66 2.165998 GAGGGAATATGATGCCAAGGC 58.834 52.381 3.61 3.61 42.35 4.35
66 67 0.883833 GGGAATATGATGCCAAGGCG 59.116 55.000 6.60 0.00 45.51 5.52
67 68 0.883833 GGAATATGATGCCAAGGCGG 59.116 55.000 6.60 0.00 45.51 6.13
76 77 3.861797 CCAAGGCGGCCCTATCGT 61.862 66.667 17.02 0.00 41.90 3.73
77 78 2.280186 CAAGGCGGCCCTATCGTC 60.280 66.667 17.02 0.00 41.90 4.20
78 79 3.547513 AAGGCGGCCCTATCGTCC 61.548 66.667 17.02 0.00 41.90 4.79
81 82 3.681835 GCGGCCCTATCGTCCGAT 61.682 66.667 7.41 7.41 45.53 4.18
82 83 2.567049 CGGCCCTATCGTCCGATC 59.433 66.667 5.31 0.00 45.53 3.69
83 84 2.265904 CGGCCCTATCGTCCGATCA 61.266 63.158 5.31 0.00 45.53 2.92
84 85 1.289380 GGCCCTATCGTCCGATCAC 59.711 63.158 5.31 0.00 36.17 3.06
85 86 1.461091 GGCCCTATCGTCCGATCACA 61.461 60.000 5.31 0.00 36.17 3.58
86 87 0.318784 GCCCTATCGTCCGATCACAC 60.319 60.000 5.31 0.00 36.17 3.82
87 88 1.029681 CCCTATCGTCCGATCACACA 58.970 55.000 5.31 0.00 36.17 3.72
88 89 1.407618 CCCTATCGTCCGATCACACAA 59.592 52.381 5.31 0.00 36.17 3.33
89 90 2.159156 CCCTATCGTCCGATCACACAAA 60.159 50.000 5.31 0.00 36.17 2.83
90 91 3.517602 CCTATCGTCCGATCACACAAAA 58.482 45.455 5.31 0.00 36.17 2.44
91 92 4.119862 CCTATCGTCCGATCACACAAAAT 58.880 43.478 5.31 0.00 36.17 1.82
92 93 4.209288 CCTATCGTCCGATCACACAAAATC 59.791 45.833 5.31 0.00 36.17 2.17
93 94 3.033368 TCGTCCGATCACACAAAATCA 57.967 42.857 0.00 0.00 0.00 2.57
94 95 3.394719 TCGTCCGATCACACAAAATCAA 58.605 40.909 0.00 0.00 0.00 2.57
95 96 3.431912 TCGTCCGATCACACAAAATCAAG 59.568 43.478 0.00 0.00 0.00 3.02
96 97 3.424829 CGTCCGATCACACAAAATCAAGG 60.425 47.826 0.00 0.00 0.00 3.61
97 98 3.081061 TCCGATCACACAAAATCAAGGG 58.919 45.455 0.00 0.00 0.00 3.95
98 99 2.819608 CCGATCACACAAAATCAAGGGT 59.180 45.455 0.00 0.00 0.00 4.34
99 100 3.255642 CCGATCACACAAAATCAAGGGTT 59.744 43.478 0.00 0.00 0.00 4.11
100 101 4.261994 CCGATCACACAAAATCAAGGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
101 102 4.917415 CGATCACACAAAATCAAGGGTTTC 59.083 41.667 0.00 0.00 0.00 2.78
102 103 4.664150 TCACACAAAATCAAGGGTTTCC 57.336 40.909 0.00 0.00 0.00 3.13
103 104 3.386402 TCACACAAAATCAAGGGTTTCCC 59.614 43.478 0.00 0.00 45.90 3.97
113 114 1.450642 GGGTTTCCCTCGGATAGGC 59.549 63.158 0.00 0.00 45.03 3.93
114 115 1.450642 GGTTTCCCTCGGATAGGCC 59.549 63.158 0.00 0.00 45.03 5.19
115 116 1.342672 GGTTTCCCTCGGATAGGCCA 61.343 60.000 5.01 0.00 45.03 5.36
116 117 0.765510 GTTTCCCTCGGATAGGCCAT 59.234 55.000 5.01 0.00 45.03 4.40
117 118 0.764890 TTTCCCTCGGATAGGCCATG 59.235 55.000 5.01 0.00 45.03 3.66
118 119 0.105194 TTCCCTCGGATAGGCCATGA 60.105 55.000 5.01 0.00 45.03 3.07
119 120 0.117140 TCCCTCGGATAGGCCATGAT 59.883 55.000 5.01 0.00 45.03 2.45
120 121 0.251354 CCCTCGGATAGGCCATGATG 59.749 60.000 5.01 0.00 45.03 3.07
121 122 0.251354 CCTCGGATAGGCCATGATGG 59.749 60.000 7.21 7.21 38.97 3.51
130 131 4.391869 CCATGATGGCCAGATCCG 57.608 61.111 13.05 0.00 0.00 4.18
131 132 1.453235 CCATGATGGCCAGATCCGT 59.547 57.895 13.05 0.00 0.00 4.69
132 133 0.604780 CCATGATGGCCAGATCCGTC 60.605 60.000 13.05 2.66 41.46 4.79
133 134 4.048696 TGATGGCCAGATCCGTCA 57.951 55.556 13.05 5.88 46.74 4.35
134 135 2.531672 TGATGGCCAGATCCGTCAT 58.468 52.632 13.05 0.00 44.75 3.06
135 136 0.394192 TGATGGCCAGATCCGTCATC 59.606 55.000 13.05 14.99 44.75 2.92
136 137 0.394192 GATGGCCAGATCCGTCATCA 59.606 55.000 13.05 0.00 40.91 3.07
137 138 0.107456 ATGGCCAGATCCGTCATCAC 59.893 55.000 13.05 0.00 33.29 3.06
138 139 1.592669 GGCCAGATCCGTCATCACG 60.593 63.158 0.00 0.00 46.29 4.35
156 157 4.980805 GCCGCGGTGACCACAGAA 62.981 66.667 28.70 0.00 0.00 3.02
157 158 2.738521 CCGCGGTGACCACAGAAG 60.739 66.667 19.50 0.00 0.00 2.85
158 159 3.414700 CGCGGTGACCACAGAAGC 61.415 66.667 1.11 0.00 0.00 3.86
159 160 2.280797 GCGGTGACCACAGAAGCA 60.281 61.111 1.11 0.00 0.00 3.91
160 161 2.607892 GCGGTGACCACAGAAGCAC 61.608 63.158 1.11 0.00 0.00 4.40
161 162 1.961277 CGGTGACCACAGAAGCACC 60.961 63.158 1.11 0.00 45.59 5.01
162 163 4.876701 GTGACCACAGAAGCACCA 57.123 55.556 0.00 0.00 0.00 4.17
163 164 3.094386 GTGACCACAGAAGCACCAA 57.906 52.632 0.00 0.00 0.00 3.67
164 165 0.947244 GTGACCACAGAAGCACCAAG 59.053 55.000 0.00 0.00 0.00 3.61
165 166 0.179020 TGACCACAGAAGCACCAAGG 60.179 55.000 0.00 0.00 0.00 3.61
166 167 1.518903 GACCACAGAAGCACCAAGGC 61.519 60.000 0.00 0.00 0.00 4.35
167 168 1.529010 CCACAGAAGCACCAAGGCA 60.529 57.895 0.00 0.00 35.83 4.75
168 169 1.108727 CCACAGAAGCACCAAGGCAA 61.109 55.000 0.00 0.00 35.83 4.52
169 170 0.746063 CACAGAAGCACCAAGGCAAA 59.254 50.000 0.00 0.00 35.83 3.68
170 171 1.035139 ACAGAAGCACCAAGGCAAAG 58.965 50.000 0.00 0.00 35.83 2.77
171 172 0.319297 CAGAAGCACCAAGGCAAAGC 60.319 55.000 0.00 0.00 35.83 3.51
172 173 0.756442 AGAAGCACCAAGGCAAAGCA 60.756 50.000 0.00 0.00 35.83 3.91
173 174 0.598419 GAAGCACCAAGGCAAAGCAC 60.598 55.000 0.00 0.00 35.83 4.40
174 175 2.029518 GCACCAAGGCAAAGCACC 59.970 61.111 0.00 0.00 0.00 5.01
175 176 2.736531 CACCAAGGCAAAGCACCC 59.263 61.111 0.00 0.00 0.00 4.61
176 177 1.833934 CACCAAGGCAAAGCACCCT 60.834 57.895 0.00 0.00 0.00 4.34
177 178 1.531602 ACCAAGGCAAAGCACCCTC 60.532 57.895 0.00 0.00 0.00 4.30
178 179 2.278330 CCAAGGCAAAGCACCCTCC 61.278 63.158 0.00 0.00 0.00 4.30
179 180 1.531365 CAAGGCAAAGCACCCTCCA 60.531 57.895 0.00 0.00 0.00 3.86
180 181 0.901580 CAAGGCAAAGCACCCTCCAT 60.902 55.000 0.00 0.00 0.00 3.41
181 182 0.901580 AAGGCAAAGCACCCTCCATG 60.902 55.000 0.00 0.00 0.00 3.66
182 183 2.575461 GCAAAGCACCCTCCATGC 59.425 61.111 0.00 0.00 43.74 4.06
187 188 2.203070 GCACCCTCCATGCTACGG 60.203 66.667 0.00 0.00 40.08 4.02
188 189 2.731571 GCACCCTCCATGCTACGGA 61.732 63.158 0.00 0.00 40.08 4.69
189 190 1.904771 CACCCTCCATGCTACGGAA 59.095 57.895 0.00 0.00 30.33 4.30
190 191 0.469917 CACCCTCCATGCTACGGAAT 59.530 55.000 0.00 0.00 30.33 3.01
191 192 0.469917 ACCCTCCATGCTACGGAATG 59.530 55.000 0.00 0.00 30.33 2.67
193 194 0.469917 CCTCCATGCTACGGAATGGT 59.530 55.000 0.00 0.00 46.47 3.55
194 195 1.541233 CCTCCATGCTACGGAATGGTC 60.541 57.143 0.00 0.00 46.47 4.02
195 196 1.414181 CTCCATGCTACGGAATGGTCT 59.586 52.381 0.00 0.00 46.47 3.85
196 197 1.412710 TCCATGCTACGGAATGGTCTC 59.587 52.381 0.00 0.00 46.47 3.36
197 198 1.491670 CATGCTACGGAATGGTCTCG 58.508 55.000 0.00 0.00 0.00 4.04
198 199 0.389391 ATGCTACGGAATGGTCTCGG 59.611 55.000 0.00 0.00 0.00 4.63
199 200 0.968901 TGCTACGGAATGGTCTCGGT 60.969 55.000 0.00 0.00 33.83 4.69
200 201 0.527817 GCTACGGAATGGTCTCGGTG 60.528 60.000 0.00 0.00 31.92 4.94
201 202 0.815734 CTACGGAATGGTCTCGGTGT 59.184 55.000 0.00 0.00 31.92 4.16
202 203 1.203994 CTACGGAATGGTCTCGGTGTT 59.796 52.381 0.00 0.00 31.92 3.32
203 204 0.395312 ACGGAATGGTCTCGGTGTTT 59.605 50.000 0.00 0.00 0.00 2.83
204 205 0.796312 CGGAATGGTCTCGGTGTTTG 59.204 55.000 0.00 0.00 0.00 2.93
205 206 1.606994 CGGAATGGTCTCGGTGTTTGA 60.607 52.381 0.00 0.00 0.00 2.69
206 207 2.076863 GGAATGGTCTCGGTGTTTGAG 58.923 52.381 0.00 0.00 34.72 3.02
207 208 2.550208 GGAATGGTCTCGGTGTTTGAGT 60.550 50.000 0.00 0.00 34.99 3.41
208 209 2.169832 ATGGTCTCGGTGTTTGAGTG 57.830 50.000 0.00 0.00 34.99 3.51
209 210 0.531974 TGGTCTCGGTGTTTGAGTGC 60.532 55.000 0.00 0.00 34.99 4.40
210 211 0.249911 GGTCTCGGTGTTTGAGTGCT 60.250 55.000 0.00 0.00 34.99 4.40
211 212 1.583054 GTCTCGGTGTTTGAGTGCTT 58.417 50.000 0.00 0.00 34.99 3.91
212 213 1.940613 GTCTCGGTGTTTGAGTGCTTT 59.059 47.619 0.00 0.00 34.99 3.51
213 214 2.032808 GTCTCGGTGTTTGAGTGCTTTC 60.033 50.000 0.00 0.00 34.99 2.62
214 215 2.158957 TCTCGGTGTTTGAGTGCTTTCT 60.159 45.455 0.00 0.00 34.99 2.52
215 216 2.614057 CTCGGTGTTTGAGTGCTTTCTT 59.386 45.455 0.00 0.00 0.00 2.52
216 217 2.612212 TCGGTGTTTGAGTGCTTTCTTC 59.388 45.455 0.00 0.00 0.00 2.87
217 218 2.354510 CGGTGTTTGAGTGCTTTCTTCA 59.645 45.455 0.00 0.00 0.00 3.02
218 219 3.546815 CGGTGTTTGAGTGCTTTCTTCAG 60.547 47.826 0.00 0.00 0.00 3.02
219 220 3.627577 GGTGTTTGAGTGCTTTCTTCAGA 59.372 43.478 0.00 0.00 0.00 3.27
220 221 4.096382 GGTGTTTGAGTGCTTTCTTCAGAA 59.904 41.667 0.00 0.00 0.00 3.02
221 222 5.030936 GTGTTTGAGTGCTTTCTTCAGAAC 58.969 41.667 0.00 0.00 33.13 3.01
222 223 4.201812 TGTTTGAGTGCTTTCTTCAGAACG 60.202 41.667 0.00 0.00 33.13 3.95
223 224 3.452755 TGAGTGCTTTCTTCAGAACGA 57.547 42.857 0.00 0.00 33.13 3.85
224 225 3.995199 TGAGTGCTTTCTTCAGAACGAT 58.005 40.909 0.00 0.00 33.13 3.73
225 226 3.742882 TGAGTGCTTTCTTCAGAACGATG 59.257 43.478 0.00 0.00 33.13 3.84
226 227 3.990469 GAGTGCTTTCTTCAGAACGATGA 59.010 43.478 0.00 0.00 33.13 2.92
227 228 4.380531 AGTGCTTTCTTCAGAACGATGAA 58.619 39.130 0.00 0.00 36.33 2.57
233 234 2.693069 CTTCAGAACGATGAAGCCACT 58.307 47.619 13.79 0.00 46.95 4.00
234 235 2.084610 TCAGAACGATGAAGCCACTG 57.915 50.000 0.00 0.00 0.00 3.66
235 236 0.445436 CAGAACGATGAAGCCACTGC 59.555 55.000 0.00 0.00 37.95 4.40
236 237 1.016130 AGAACGATGAAGCCACTGCG 61.016 55.000 0.00 0.00 44.33 5.18
237 238 2.568935 GAACGATGAAGCCACTGCGC 62.569 60.000 0.00 0.00 44.33 6.09
238 239 3.869272 CGATGAAGCCACTGCGCC 61.869 66.667 4.18 0.00 44.33 6.53
239 240 2.437359 GATGAAGCCACTGCGCCT 60.437 61.111 4.18 0.00 44.33 5.52
240 241 2.437359 ATGAAGCCACTGCGCCTC 60.437 61.111 4.18 0.00 44.33 4.70
241 242 2.866085 GATGAAGCCACTGCGCCTCT 62.866 60.000 4.18 0.00 44.33 3.69
242 243 1.617018 ATGAAGCCACTGCGCCTCTA 61.617 55.000 4.18 0.00 44.33 2.43
243 244 1.520342 GAAGCCACTGCGCCTCTAG 60.520 63.158 4.18 0.00 44.33 2.43
244 245 2.232298 GAAGCCACTGCGCCTCTAGT 62.232 60.000 4.18 0.00 44.33 2.57
245 246 1.831652 AAGCCACTGCGCCTCTAGTT 61.832 55.000 4.18 0.00 44.33 2.24
246 247 2.103042 GCCACTGCGCCTCTAGTTG 61.103 63.158 4.18 0.00 0.00 3.16
247 248 1.293498 CCACTGCGCCTCTAGTTGT 59.707 57.895 4.18 0.00 0.00 3.32
248 249 0.320771 CCACTGCGCCTCTAGTTGTT 60.321 55.000 4.18 0.00 0.00 2.83
249 250 1.512926 CACTGCGCCTCTAGTTGTTT 58.487 50.000 4.18 0.00 0.00 2.83
250 251 1.195448 CACTGCGCCTCTAGTTGTTTG 59.805 52.381 4.18 0.00 0.00 2.93
251 252 1.202651 ACTGCGCCTCTAGTTGTTTGT 60.203 47.619 4.18 0.00 0.00 2.83
252 253 1.873591 CTGCGCCTCTAGTTGTTTGTT 59.126 47.619 4.18 0.00 0.00 2.83
253 254 3.064207 CTGCGCCTCTAGTTGTTTGTTA 58.936 45.455 4.18 0.00 0.00 2.41
254 255 3.468770 TGCGCCTCTAGTTGTTTGTTAA 58.531 40.909 4.18 0.00 0.00 2.01
255 256 3.878103 TGCGCCTCTAGTTGTTTGTTAAA 59.122 39.130 4.18 0.00 0.00 1.52
256 257 4.335874 TGCGCCTCTAGTTGTTTGTTAAAA 59.664 37.500 4.18 0.00 0.00 1.52
257 258 5.163642 TGCGCCTCTAGTTGTTTGTTAAAAA 60.164 36.000 4.18 0.00 0.00 1.94
279 280 7.419711 AAAAATTCCTGTAGATAGGAGTCGA 57.580 36.000 0.00 0.00 46.94 4.20
280 281 6.642707 AAATTCCTGTAGATAGGAGTCGAG 57.357 41.667 0.00 0.00 46.94 4.04
281 282 4.774660 TTCCTGTAGATAGGAGTCGAGT 57.225 45.455 0.00 0.00 46.94 4.18
282 283 4.339872 TCCTGTAGATAGGAGTCGAGTC 57.660 50.000 12.02 12.02 41.85 3.36
283 284 3.061322 CCTGTAGATAGGAGTCGAGTCG 58.939 54.545 13.95 6.09 40.42 4.18
315 316 1.386533 GTTGGATCCACAGATGCCTG 58.613 55.000 15.91 0.00 45.76 4.85
327 328 3.776969 ACAGATGCCTGAAACAGAGGATA 59.223 43.478 0.00 0.00 43.02 2.59
335 336 6.070251 TGCCTGAAACAGAGGATAACTTGATA 60.070 38.462 0.00 0.00 32.44 2.15
340 341 8.470805 TGAAACAGAGGATAACTTGATAGTCTC 58.529 37.037 0.00 0.00 31.99 3.36
358 359 0.945099 TCGCCGTTGTGCACAATTTA 59.055 45.000 33.16 15.53 38.24 1.40
361 362 1.268352 GCCGTTGTGCACAATTTAGGA 59.732 47.619 33.16 8.39 38.24 2.94
362 363 2.668279 GCCGTTGTGCACAATTTAGGAG 60.668 50.000 33.16 17.57 38.24 3.69
363 364 2.095263 CCGTTGTGCACAATTTAGGAGG 60.095 50.000 33.16 21.74 38.24 4.30
364 365 2.668279 CGTTGTGCACAATTTAGGAGGC 60.668 50.000 33.16 16.66 38.24 4.70
484 485 2.280797 AACACGTCCAGCATGCGT 60.281 55.556 13.01 0.00 39.59 5.24
519 521 1.298859 GGTTCACTGCATCCCGTGTC 61.299 60.000 4.00 0.28 33.07 3.67
546 549 5.292101 ACTTATGCAGAATTAGTGCTTCGTC 59.708 40.000 12.27 0.00 41.78 4.20
692 712 9.581289 TTAATTTAGTCATTCTGAAACCTCCAA 57.419 29.630 0.00 0.00 0.00 3.53
737 760 6.699642 CCTGAAGCCTTTCGTTTATTTTCAAA 59.300 34.615 0.00 0.00 36.04 2.69
790 819 5.060506 TGGCGTCTCTTGAAGTTGAATTTA 58.939 37.500 0.00 0.00 0.00 1.40
794 823 6.521133 GCGTCTCTTGAAGTTGAATTTACATG 59.479 38.462 0.00 0.00 0.00 3.21
901 4152 1.174712 AGGCATTGCTCCACACACAC 61.175 55.000 8.82 0.00 0.00 3.82
908 4159 1.024046 GCTCCACACACACACACACA 61.024 55.000 0.00 0.00 0.00 3.72
909 4160 0.726827 CTCCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
910 4161 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
911 4162 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
912 4163 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
913 4164 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
914 4165 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
915 4166 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
916 4167 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
917 4168 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
918 4169 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
919 4170 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
937 4188 2.568956 ACATCCTTGAGCAGTTGAGCTA 59.431 45.455 0.00 0.00 46.75 3.32
948 4202 6.594159 TGAGCAGTTGAGCTACCTTAATTAAC 59.406 38.462 0.00 0.00 46.75 2.01
1029 4295 1.812922 CGCGCTGCTTCTCCTCATT 60.813 57.895 5.56 0.00 0.00 2.57
1150 8879 3.385384 CCGTCCAGCTGCCTCTGA 61.385 66.667 8.66 0.00 36.19 3.27
1160 8889 1.150567 CTGCCTCTGACAGCGTATGC 61.151 60.000 0.00 0.00 43.24 3.14
1177 8906 0.392706 TGCTTGCTCCAAGAAGTCGA 59.607 50.000 9.01 0.00 43.42 4.20
1239 8968 4.240103 TGCGTGGACACTGCTGCT 62.240 61.111 15.96 0.00 33.98 4.24
1324 9053 1.857965 CTGTGTGGATCTCCTCTCCA 58.142 55.000 0.00 0.00 40.49 3.86
1327 9056 1.134965 GTGTGGATCTCCTCTCCAACG 60.135 57.143 0.00 0.00 44.19 4.10
1393 9122 3.681897 CAGCTATGGATTCTGCGATTACC 59.318 47.826 0.00 0.00 0.00 2.85
1463 9192 3.621419 CCAAAGGGGCAGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
1464 9193 1.870064 CCAAAGGGGCAGATCCAATT 58.130 50.000 0.00 0.00 36.21 2.32
1465 9194 3.030873 CCAAAGGGGCAGATCCAATTA 57.969 47.619 0.00 0.00 36.21 1.40
1466 9195 3.373830 CCAAAGGGGCAGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
1467 9196 3.969312 CCAAAGGGGCAGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
1468 9197 4.039609 CCAAAGGGGCAGATCCAATTAATC 59.960 45.833 0.00 0.00 36.21 1.75
1469 9198 4.821532 AAGGGGCAGATCCAATTAATCT 57.178 40.909 0.00 0.00 36.21 2.40
1470 9199 4.379302 AGGGGCAGATCCAATTAATCTC 57.621 45.455 0.62 0.00 36.21 2.75
1471 9200 3.723681 AGGGGCAGATCCAATTAATCTCA 59.276 43.478 0.62 0.00 36.21 3.27
1472 9201 4.077822 GGGGCAGATCCAATTAATCTCAG 58.922 47.826 0.62 0.00 36.21 3.35
1473 9202 4.446889 GGGGCAGATCCAATTAATCTCAGT 60.447 45.833 0.62 0.00 36.21 3.41
1474 9203 4.759183 GGGCAGATCCAATTAATCTCAGTC 59.241 45.833 0.62 0.00 36.21 3.51
1475 9204 5.371526 GGCAGATCCAATTAATCTCAGTCA 58.628 41.667 0.62 0.00 31.05 3.41
1476 9205 6.002704 GGCAGATCCAATTAATCTCAGTCAT 58.997 40.000 0.62 0.00 31.05 3.06
1477 9206 6.149142 GGCAGATCCAATTAATCTCAGTCATC 59.851 42.308 0.62 0.00 31.05 2.92
1478 9207 6.709397 GCAGATCCAATTAATCTCAGTCATCA 59.291 38.462 0.62 0.00 31.05 3.07
1479 9208 7.228108 GCAGATCCAATTAATCTCAGTCATCAA 59.772 37.037 0.62 0.00 31.05 2.57
1480 9209 9.117183 CAGATCCAATTAATCTCAGTCATCAAA 57.883 33.333 0.62 0.00 31.05 2.69
1481 9210 9.863650 AGATCCAATTAATCTCAGTCATCAAAT 57.136 29.630 0.00 0.00 0.00 2.32
1483 9212 9.636789 ATCCAATTAATCTCAGTCATCAAATCA 57.363 29.630 0.00 0.00 0.00 2.57
1484 9213 9.465199 TCCAATTAATCTCAGTCATCAAATCAA 57.535 29.630 0.00 0.00 0.00 2.57
1485 9214 9.731819 CCAATTAATCTCAGTCATCAAATCAAG 57.268 33.333 0.00 0.00 0.00 3.02
1488 9217 9.676861 ATTAATCTCAGTCATCAAATCAAGTCA 57.323 29.630 0.00 0.00 0.00 3.41
1489 9218 7.991084 AATCTCAGTCATCAAATCAAGTCAA 57.009 32.000 0.00 0.00 0.00 3.18
1490 9219 8.577048 AATCTCAGTCATCAAATCAAGTCAAT 57.423 30.769 0.00 0.00 0.00 2.57
1491 9220 7.606858 TCTCAGTCATCAAATCAAGTCAATC 57.393 36.000 0.00 0.00 0.00 2.67
1492 9221 6.596888 TCTCAGTCATCAAATCAAGTCAATCC 59.403 38.462 0.00 0.00 0.00 3.01
1493 9222 6.240145 TCAGTCATCAAATCAAGTCAATCCA 58.760 36.000 0.00 0.00 0.00 3.41
1494 9223 6.716173 TCAGTCATCAAATCAAGTCAATCCAA 59.284 34.615 0.00 0.00 0.00 3.53
1495 9224 6.805271 CAGTCATCAAATCAAGTCAATCCAAC 59.195 38.462 0.00 0.00 0.00 3.77
1496 9225 5.796935 GTCATCAAATCAAGTCAATCCAACG 59.203 40.000 0.00 0.00 0.00 4.10
1497 9226 5.704978 TCATCAAATCAAGTCAATCCAACGA 59.295 36.000 0.00 0.00 0.00 3.85
1498 9227 5.356882 TCAAATCAAGTCAATCCAACGAC 57.643 39.130 0.00 0.00 0.00 4.34
1499 9228 4.215399 TCAAATCAAGTCAATCCAACGACC 59.785 41.667 0.00 0.00 32.33 4.79
1500 9229 3.703001 ATCAAGTCAATCCAACGACCT 57.297 42.857 0.00 0.00 32.33 3.85
1501 9230 4.819105 ATCAAGTCAATCCAACGACCTA 57.181 40.909 0.00 0.00 32.33 3.08
1502 9231 4.188247 TCAAGTCAATCCAACGACCTAG 57.812 45.455 0.00 0.00 32.33 3.02
1503 9232 3.830178 TCAAGTCAATCCAACGACCTAGA 59.170 43.478 0.00 0.00 32.33 2.43
1504 9233 3.870633 AGTCAATCCAACGACCTAGAC 57.129 47.619 0.00 0.00 32.33 2.59
1505 9234 3.432378 AGTCAATCCAACGACCTAGACT 58.568 45.455 0.00 0.00 32.33 3.24
1506 9235 3.193691 AGTCAATCCAACGACCTAGACTG 59.806 47.826 0.00 0.00 34.17 3.51
1507 9236 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
1508 9237 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
1509 9238 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
1510 9239 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
1511 9240 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
1512 9241 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
1513 9242 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
1514 9243 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
1515 9244 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
1516 9245 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
1517 9246 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
1518 9247 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
1519 9248 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
1520 9249 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
1521 9250 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
1522 9251 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
1523 9252 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
1524 9253 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
1525 9254 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
1526 9255 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
1527 9256 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
1528 9257 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
1529 9258 0.512518 CAATGTCGAGCGCTCAACAA 59.487 50.000 32.74 17.57 0.00 2.83
1530 9259 0.792640 AATGTCGAGCGCTCAACAAG 59.207 50.000 32.74 18.11 0.00 3.16
1531 9260 0.319900 ATGTCGAGCGCTCAACAAGT 60.320 50.000 32.74 16.59 0.00 3.16
1532 9261 0.529773 TGTCGAGCGCTCAACAAGTT 60.530 50.000 34.69 0.00 0.00 2.66
1533 9262 0.582005 GTCGAGCGCTCAACAAGTTT 59.418 50.000 34.69 0.00 0.00 2.66
1534 9263 1.790623 GTCGAGCGCTCAACAAGTTTA 59.209 47.619 34.69 7.19 0.00 2.01
1535 9264 2.058798 TCGAGCGCTCAACAAGTTTAG 58.941 47.619 34.69 15.72 0.00 1.85
1536 9265 1.462541 CGAGCGCTCAACAAGTTTAGC 60.463 52.381 34.69 8.65 36.68 3.09
1542 9271 4.053903 GCTCAACAAGTTTAGCGTGTAG 57.946 45.455 3.66 0.00 38.82 2.74
1543 9272 3.493503 GCTCAACAAGTTTAGCGTGTAGT 59.506 43.478 3.66 0.00 38.82 2.73
1544 9273 4.025145 GCTCAACAAGTTTAGCGTGTAGTT 60.025 41.667 3.66 0.00 38.82 2.24
1545 9274 5.176223 GCTCAACAAGTTTAGCGTGTAGTTA 59.824 40.000 3.66 0.00 38.82 2.24
1546 9275 6.292488 GCTCAACAAGTTTAGCGTGTAGTTAA 60.292 38.462 3.66 0.00 38.82 2.01
1547 9276 7.570691 GCTCAACAAGTTTAGCGTGTAGTTAAT 60.571 37.037 3.66 0.00 38.82 1.40
1548 9277 8.145316 TCAACAAGTTTAGCGTGTAGTTAATT 57.855 30.769 0.00 0.00 38.82 1.40
1549 9278 8.614346 TCAACAAGTTTAGCGTGTAGTTAATTT 58.386 29.630 0.00 0.00 38.82 1.82
1550 9279 8.889000 CAACAAGTTTAGCGTGTAGTTAATTTC 58.111 33.333 0.00 0.00 38.82 2.17
1551 9280 8.145316 ACAAGTTTAGCGTGTAGTTAATTTCA 57.855 30.769 0.00 0.00 38.01 2.69
1552 9281 8.780249 ACAAGTTTAGCGTGTAGTTAATTTCAT 58.220 29.630 0.00 0.00 38.01 2.57
1553 9282 9.051027 CAAGTTTAGCGTGTAGTTAATTTCATG 57.949 33.333 0.00 0.00 0.00 3.07
1554 9283 7.241376 AGTTTAGCGTGTAGTTAATTTCATGC 58.759 34.615 12.08 12.08 41.37 4.06
1555 9284 4.616181 AGCGTGTAGTTAATTTCATGCC 57.384 40.909 15.14 2.28 41.81 4.40
1556 9285 4.006989 AGCGTGTAGTTAATTTCATGCCA 58.993 39.130 15.14 0.00 41.81 4.92
1557 9286 4.457603 AGCGTGTAGTTAATTTCATGCCAA 59.542 37.500 15.14 0.00 41.81 4.52
1558 9287 5.048364 AGCGTGTAGTTAATTTCATGCCAAA 60.048 36.000 15.14 0.00 41.81 3.28
1559 9288 5.804979 GCGTGTAGTTAATTTCATGCCAAAT 59.195 36.000 9.69 0.00 37.00 2.32
1560 9289 6.970043 GCGTGTAGTTAATTTCATGCCAAATA 59.030 34.615 9.69 0.00 37.00 1.40
1561 9290 7.647715 GCGTGTAGTTAATTTCATGCCAAATAT 59.352 33.333 9.69 0.00 37.00 1.28
1616 9345 9.658799 AATATCCTATATAATATCCGCATGCAC 57.341 33.333 19.57 0.00 0.00 4.57
1617 9346 6.731292 TCCTATATAATATCCGCATGCACT 57.269 37.500 19.57 3.59 0.00 4.40
1618 9347 7.124573 TCCTATATAATATCCGCATGCACTT 57.875 36.000 19.57 3.39 0.00 3.16
1619 9348 8.245195 TCCTATATAATATCCGCATGCACTTA 57.755 34.615 19.57 5.72 0.00 2.24
1620 9349 8.700973 TCCTATATAATATCCGCATGCACTTAA 58.299 33.333 19.57 0.00 0.00 1.85
1621 9350 9.494271 CCTATATAATATCCGCATGCACTTAAT 57.506 33.333 19.57 5.58 0.00 1.40
1627 9356 8.792830 AATATCCGCATGCACTTAATATACTT 57.207 30.769 19.57 0.00 0.00 2.24
1628 9357 6.727824 ATCCGCATGCACTTAATATACTTC 57.272 37.500 19.57 0.00 0.00 3.01
1629 9358 5.853936 TCCGCATGCACTTAATATACTTCT 58.146 37.500 19.57 0.00 0.00 2.85
1630 9359 6.988522 TCCGCATGCACTTAATATACTTCTA 58.011 36.000 19.57 0.00 0.00 2.10
1631 9360 7.438564 TCCGCATGCACTTAATATACTTCTAA 58.561 34.615 19.57 0.00 0.00 2.10
1632 9361 7.929245 TCCGCATGCACTTAATATACTTCTAAA 59.071 33.333 19.57 0.00 0.00 1.85
1633 9362 8.721478 CCGCATGCACTTAATATACTTCTAAAT 58.279 33.333 19.57 0.00 0.00 1.40
1650 9379 8.726988 ACTTCTAAATTAATGTACATTGCACGT 58.273 29.630 27.62 13.15 32.50 4.49
1651 9380 8.888332 TTCTAAATTAATGTACATTGCACGTG 57.112 30.769 27.62 12.28 32.50 4.49
1652 9381 8.035165 TCTAAATTAATGTACATTGCACGTGT 57.965 30.769 27.62 10.92 32.50 4.49
1653 9382 9.152595 TCTAAATTAATGTACATTGCACGTGTA 57.847 29.630 27.62 10.46 32.50 2.90
1713 9442 6.054941 ACCATCGTATCTGAATATTTGCACA 58.945 36.000 0.00 0.00 0.00 4.57
1732 9555 6.108687 TGCACAAGATATATAGCTATGTGCC 58.891 40.000 34.30 25.90 45.20 5.01
1753 9576 1.260538 ATGCAGAAGCGAGAGTGGGA 61.261 55.000 0.00 0.00 46.23 4.37
1861 9684 4.707448 TGTGGCCGTTGAATATTACCAAAT 59.293 37.500 0.00 0.00 0.00 2.32
1877 9700 2.037511 CCAAATCTTGGTGTTGTGGCAT 59.962 45.455 0.00 0.00 45.93 4.40
1885 9708 3.694926 TGGTGTTGTGGCATTGATATCA 58.305 40.909 0.00 0.00 0.00 2.15
1886 9709 3.443329 TGGTGTTGTGGCATTGATATCAC 59.557 43.478 4.48 0.00 0.00 3.06
1904 9727 9.764363 TGATATCACCTAGTAATGTTGTTGATC 57.236 33.333 0.00 0.00 0.00 2.92
1908 9731 8.267620 TCACCTAGTAATGTTGTTGATCAATG 57.732 34.615 12.12 0.59 38.38 2.82
1909 9732 8.100164 TCACCTAGTAATGTTGTTGATCAATGA 58.900 33.333 12.12 3.10 38.38 2.57
1910 9733 8.729756 CACCTAGTAATGTTGTTGATCAATGAA 58.270 33.333 12.12 5.14 38.38 2.57
1911 9734 9.295825 ACCTAGTAATGTTGTTGATCAATGAAA 57.704 29.630 12.12 4.37 38.38 2.69
2000 10211 8.134895 TGTTCAGATTGTTGAGATTTTGGTAAC 58.865 33.333 0.00 0.00 0.00 2.50
2046 10429 5.788450 AGATATGTGGAATAGGCTTTCTCG 58.212 41.667 0.00 0.00 0.00 4.04
2121 10590 4.142293 TGAAACCGCATGCTGCATAATTTA 60.142 37.500 15.78 0.88 45.36 1.40
2302 10795 5.633182 CACGCTTTGTTTGGCTATGTAATTT 59.367 36.000 0.00 0.00 0.00 1.82
2330 10823 2.296190 CAGCCCTTTGTTAACCCAGTTC 59.704 50.000 2.48 0.00 0.00 3.01
2382 10883 5.895928 TCTCAGACGAAGAATAGTTGGATG 58.104 41.667 0.00 0.00 0.00 3.51
2393 10896 7.360113 AGAATAGTTGGATGGTGTTTTTGTT 57.640 32.000 0.00 0.00 0.00 2.83
2395 10898 4.135747 AGTTGGATGGTGTTTTTGTTGG 57.864 40.909 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.530650 TTTGGAGCTCGATCGGCATC 60.531 55.000 24.07 18.41 0.00 3.91
12 13 0.531532 CTTTGGAGCTCGATCGGCAT 60.532 55.000 24.07 13.04 0.00 4.40
13 14 1.153568 CTTTGGAGCTCGATCGGCA 60.154 57.895 24.07 4.08 0.00 5.69
14 15 1.141881 TCTTTGGAGCTCGATCGGC 59.858 57.895 16.41 17.03 0.00 5.54
15 16 0.457851 AGTCTTTGGAGCTCGATCGG 59.542 55.000 16.41 7.26 0.00 4.18
16 17 3.367607 CTTAGTCTTTGGAGCTCGATCG 58.632 50.000 9.36 9.36 0.00 3.69
17 18 3.120041 GCTTAGTCTTTGGAGCTCGATC 58.880 50.000 7.83 0.00 32.54 3.69
18 19 2.159028 GGCTTAGTCTTTGGAGCTCGAT 60.159 50.000 7.83 0.00 35.53 3.59
19 20 1.204941 GGCTTAGTCTTTGGAGCTCGA 59.795 52.381 7.83 0.00 35.53 4.04
20 21 1.646189 GGCTTAGTCTTTGGAGCTCG 58.354 55.000 7.83 0.00 35.53 5.03
21 22 1.407575 GGGGCTTAGTCTTTGGAGCTC 60.408 57.143 4.71 4.71 35.53 4.09
22 23 0.621082 GGGGCTTAGTCTTTGGAGCT 59.379 55.000 0.00 0.00 35.53 4.09
23 24 0.394488 GGGGGCTTAGTCTTTGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
24 25 0.991920 TGGGGGCTTAGTCTTTGGAG 59.008 55.000 0.00 0.00 0.00 3.86
25 26 1.354368 CTTGGGGGCTTAGTCTTTGGA 59.646 52.381 0.00 0.00 0.00 3.53
26 27 1.354368 TCTTGGGGGCTTAGTCTTTGG 59.646 52.381 0.00 0.00 0.00 3.28
27 28 2.619074 CCTCTTGGGGGCTTAGTCTTTG 60.619 54.545 0.00 0.00 0.00 2.77
28 29 1.636003 CCTCTTGGGGGCTTAGTCTTT 59.364 52.381 0.00 0.00 0.00 2.52
29 30 1.290134 CCTCTTGGGGGCTTAGTCTT 58.710 55.000 0.00 0.00 0.00 3.01
30 31 3.013682 CCTCTTGGGGGCTTAGTCT 57.986 57.895 0.00 0.00 0.00 3.24
41 42 3.513909 TGGCATCATATTCCCTCTTGG 57.486 47.619 0.00 0.00 0.00 3.61
42 43 3.825014 CCTTGGCATCATATTCCCTCTTG 59.175 47.826 0.00 0.00 0.00 3.02
43 44 3.753193 GCCTTGGCATCATATTCCCTCTT 60.753 47.826 6.79 0.00 0.00 2.85
44 45 2.224967 GCCTTGGCATCATATTCCCTCT 60.225 50.000 6.79 0.00 0.00 3.69
45 46 2.165998 GCCTTGGCATCATATTCCCTC 58.834 52.381 6.79 0.00 0.00 4.30
46 47 1.546323 CGCCTTGGCATCATATTCCCT 60.546 52.381 12.45 0.00 0.00 4.20
47 48 0.883833 CGCCTTGGCATCATATTCCC 59.116 55.000 12.45 0.00 0.00 3.97
48 49 0.883833 CCGCCTTGGCATCATATTCC 59.116 55.000 12.45 0.00 0.00 3.01
59 60 3.809374 GACGATAGGGCCGCCTTGG 62.809 68.421 9.86 0.00 43.77 3.61
60 61 2.280186 GACGATAGGGCCGCCTTG 60.280 66.667 9.86 0.00 43.77 3.61
61 62 3.547513 GGACGATAGGGCCGCCTT 61.548 66.667 9.86 3.84 43.77 4.35
66 67 1.289380 GTGATCGGACGATAGGGCC 59.711 63.158 7.25 0.00 43.77 5.80
67 68 0.318784 GTGTGATCGGACGATAGGGC 60.319 60.000 7.25 0.00 43.77 5.19
68 69 1.029681 TGTGTGATCGGACGATAGGG 58.970 55.000 7.25 0.00 43.77 3.53
69 70 2.863401 TTGTGTGATCGGACGATAGG 57.137 50.000 7.25 0.00 43.77 2.57
70 71 4.803613 TGATTTTGTGTGATCGGACGATAG 59.196 41.667 7.25 0.00 46.19 2.08
71 72 4.749976 TGATTTTGTGTGATCGGACGATA 58.250 39.130 7.25 0.00 34.60 2.92
72 73 3.595173 TGATTTTGTGTGATCGGACGAT 58.405 40.909 6.95 6.95 37.59 3.73
73 74 3.033368 TGATTTTGTGTGATCGGACGA 57.967 42.857 0.00 0.00 0.00 4.20
74 75 3.424829 CCTTGATTTTGTGTGATCGGACG 60.425 47.826 0.00 0.00 0.00 4.79
75 76 3.119849 CCCTTGATTTTGTGTGATCGGAC 60.120 47.826 0.00 0.00 0.00 4.79
76 77 3.081061 CCCTTGATTTTGTGTGATCGGA 58.919 45.455 0.00 0.00 0.00 4.55
77 78 2.819608 ACCCTTGATTTTGTGTGATCGG 59.180 45.455 0.00 0.00 0.00 4.18
78 79 4.503741 AACCCTTGATTTTGTGTGATCG 57.496 40.909 0.00 0.00 0.00 3.69
79 80 5.230182 GGAAACCCTTGATTTTGTGTGATC 58.770 41.667 0.00 0.00 0.00 2.92
80 81 5.213891 GGAAACCCTTGATTTTGTGTGAT 57.786 39.130 0.00 0.00 0.00 3.06
81 82 4.664150 GGAAACCCTTGATTTTGTGTGA 57.336 40.909 0.00 0.00 0.00 3.58
96 97 1.342672 TGGCCTATCCGAGGGAAACC 61.343 60.000 3.32 0.00 46.81 3.27
97 98 0.765510 ATGGCCTATCCGAGGGAAAC 59.234 55.000 3.32 0.00 46.81 2.78
98 99 0.764890 CATGGCCTATCCGAGGGAAA 59.235 55.000 3.32 0.00 46.81 3.13
99 100 0.105194 TCATGGCCTATCCGAGGGAA 60.105 55.000 3.32 0.00 46.81 3.97
100 101 0.117140 ATCATGGCCTATCCGAGGGA 59.883 55.000 3.32 0.00 46.81 4.20
101 102 0.251354 CATCATGGCCTATCCGAGGG 59.749 60.000 3.32 0.00 46.81 4.30
103 104 3.849002 CCATCATGGCCTATCCGAG 57.151 57.895 3.32 0.00 37.80 4.63
113 114 0.604780 GACGGATCTGGCCATCATGG 60.605 60.000 5.51 0.00 41.55 3.66
114 115 0.107268 TGACGGATCTGGCCATCATG 59.893 55.000 5.51 0.71 0.00 3.07
115 116 1.002888 GATGACGGATCTGGCCATCAT 59.997 52.381 23.32 15.50 35.12 2.45
116 117 0.394192 GATGACGGATCTGGCCATCA 59.606 55.000 23.32 6.37 35.12 3.07
117 118 0.394192 TGATGACGGATCTGGCCATC 59.606 55.000 22.29 22.29 35.47 3.51
118 119 0.107456 GTGATGACGGATCTGGCCAT 59.893 55.000 5.51 8.10 31.55 4.40
119 120 1.522092 GTGATGACGGATCTGGCCA 59.478 57.895 4.71 4.71 31.55 5.36
120 121 1.592669 CGTGATGACGGATCTGGCC 60.593 63.158 4.51 0.00 42.18 5.36
121 122 4.018609 CGTGATGACGGATCTGGC 57.981 61.111 6.47 2.70 42.18 4.85
139 140 4.980805 TTCTGTGGTCACCGCGGC 62.981 66.667 28.58 9.70 39.98 6.53
140 141 2.738521 CTTCTGTGGTCACCGCGG 60.739 66.667 26.86 26.86 41.39 6.46
141 142 3.414700 GCTTCTGTGGTCACCGCG 61.415 66.667 2.11 0.00 36.72 6.46
142 143 2.280797 TGCTTCTGTGGTCACCGC 60.281 61.111 0.00 0.00 34.12 5.68
143 144 1.961277 GGTGCTTCTGTGGTCACCG 60.961 63.158 0.00 0.00 39.46 4.94
144 145 0.465460 TTGGTGCTTCTGTGGTCACC 60.465 55.000 3.49 3.49 46.78 4.02
145 146 0.947244 CTTGGTGCTTCTGTGGTCAC 59.053 55.000 0.00 0.00 0.00 3.67
146 147 0.179020 CCTTGGTGCTTCTGTGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
147 148 1.518903 GCCTTGGTGCTTCTGTGGTC 61.519 60.000 0.00 0.00 0.00 4.02
148 149 1.529244 GCCTTGGTGCTTCTGTGGT 60.529 57.895 0.00 0.00 0.00 4.16
149 150 1.108727 TTGCCTTGGTGCTTCTGTGG 61.109 55.000 0.00 0.00 0.00 4.17
150 151 0.746063 TTTGCCTTGGTGCTTCTGTG 59.254 50.000 0.00 0.00 0.00 3.66
151 152 1.035139 CTTTGCCTTGGTGCTTCTGT 58.965 50.000 0.00 0.00 0.00 3.41
152 153 0.319297 GCTTTGCCTTGGTGCTTCTG 60.319 55.000 0.00 0.00 0.00 3.02
153 154 0.756442 TGCTTTGCCTTGGTGCTTCT 60.756 50.000 0.00 0.00 0.00 2.85
154 155 0.598419 GTGCTTTGCCTTGGTGCTTC 60.598 55.000 0.00 0.00 0.00 3.86
155 156 1.442987 GTGCTTTGCCTTGGTGCTT 59.557 52.632 0.00 0.00 0.00 3.91
156 157 2.501602 GGTGCTTTGCCTTGGTGCT 61.502 57.895 0.00 0.00 0.00 4.40
157 158 2.029518 GGTGCTTTGCCTTGGTGC 59.970 61.111 0.00 0.00 0.00 5.01
158 159 1.809567 GAGGGTGCTTTGCCTTGGTG 61.810 60.000 0.00 0.00 0.00 4.17
159 160 1.531602 GAGGGTGCTTTGCCTTGGT 60.532 57.895 0.00 0.00 0.00 3.67
160 161 2.278330 GGAGGGTGCTTTGCCTTGG 61.278 63.158 0.00 0.00 0.00 3.61
161 162 0.901580 ATGGAGGGTGCTTTGCCTTG 60.902 55.000 0.00 0.00 0.00 3.61
162 163 0.901580 CATGGAGGGTGCTTTGCCTT 60.902 55.000 0.00 0.00 0.00 4.35
163 164 1.304713 CATGGAGGGTGCTTTGCCT 60.305 57.895 0.00 0.00 0.00 4.75
164 165 3.010413 GCATGGAGGGTGCTTTGCC 62.010 63.158 0.00 0.00 39.45 4.52
165 166 2.575461 GCATGGAGGGTGCTTTGC 59.425 61.111 0.00 0.00 39.45 3.68
170 171 2.203070 CCGTAGCATGGAGGGTGC 60.203 66.667 0.00 0.00 42.81 5.01
171 172 0.469917 ATTCCGTAGCATGGAGGGTG 59.530 55.000 0.00 0.00 34.21 4.61
172 173 0.469917 CATTCCGTAGCATGGAGGGT 59.530 55.000 0.00 0.00 34.21 4.34
173 174 0.250467 CCATTCCGTAGCATGGAGGG 60.250 60.000 0.00 0.00 42.49 4.30
174 175 0.469917 ACCATTCCGTAGCATGGAGG 59.530 55.000 5.55 4.01 42.49 4.30
175 176 1.414181 AGACCATTCCGTAGCATGGAG 59.586 52.381 5.55 0.00 42.49 3.86
176 177 1.412710 GAGACCATTCCGTAGCATGGA 59.587 52.381 5.55 0.00 42.49 3.41
177 178 1.869754 CGAGACCATTCCGTAGCATGG 60.870 57.143 0.00 0.00 45.01 3.66
178 179 1.491670 CGAGACCATTCCGTAGCATG 58.508 55.000 0.00 0.00 0.00 4.06
179 180 0.389391 CCGAGACCATTCCGTAGCAT 59.611 55.000 0.00 0.00 0.00 3.79
180 181 0.968901 ACCGAGACCATTCCGTAGCA 60.969 55.000 0.00 0.00 0.00 3.49
181 182 0.527817 CACCGAGACCATTCCGTAGC 60.528 60.000 0.00 0.00 0.00 3.58
182 183 0.815734 ACACCGAGACCATTCCGTAG 59.184 55.000 0.00 0.00 0.00 3.51
183 184 1.259609 AACACCGAGACCATTCCGTA 58.740 50.000 0.00 0.00 0.00 4.02
184 185 0.395312 AAACACCGAGACCATTCCGT 59.605 50.000 0.00 0.00 0.00 4.69
185 186 0.796312 CAAACACCGAGACCATTCCG 59.204 55.000 0.00 0.00 0.00 4.30
186 187 2.076863 CTCAAACACCGAGACCATTCC 58.923 52.381 0.00 0.00 31.84 3.01
187 188 2.480419 CACTCAAACACCGAGACCATTC 59.520 50.000 0.00 0.00 34.47 2.67
188 189 2.494059 CACTCAAACACCGAGACCATT 58.506 47.619 0.00 0.00 34.47 3.16
189 190 1.878102 GCACTCAAACACCGAGACCAT 60.878 52.381 0.00 0.00 34.47 3.55
190 191 0.531974 GCACTCAAACACCGAGACCA 60.532 55.000 0.00 0.00 34.47 4.02
191 192 0.249911 AGCACTCAAACACCGAGACC 60.250 55.000 0.00 0.00 34.47 3.85
192 193 1.583054 AAGCACTCAAACACCGAGAC 58.417 50.000 0.00 0.00 34.47 3.36
193 194 2.158957 AGAAAGCACTCAAACACCGAGA 60.159 45.455 0.00 0.00 34.47 4.04
194 195 2.213499 AGAAAGCACTCAAACACCGAG 58.787 47.619 0.00 0.00 36.53 4.63
195 196 2.325583 AGAAAGCACTCAAACACCGA 57.674 45.000 0.00 0.00 0.00 4.69
196 197 2.354510 TGAAGAAAGCACTCAAACACCG 59.645 45.455 0.00 0.00 0.00 4.94
197 198 3.627577 TCTGAAGAAAGCACTCAAACACC 59.372 43.478 0.00 0.00 0.00 4.16
198 199 4.882671 TCTGAAGAAAGCACTCAAACAC 57.117 40.909 0.00 0.00 0.00 3.32
199 200 4.201812 CGTTCTGAAGAAAGCACTCAAACA 60.202 41.667 0.00 0.00 35.58 2.83
200 201 4.034048 TCGTTCTGAAGAAAGCACTCAAAC 59.966 41.667 1.62 0.00 35.58 2.93
201 202 4.188462 TCGTTCTGAAGAAAGCACTCAAA 58.812 39.130 1.62 0.00 35.58 2.69
202 203 3.792401 TCGTTCTGAAGAAAGCACTCAA 58.208 40.909 1.62 0.00 35.58 3.02
203 204 3.452755 TCGTTCTGAAGAAAGCACTCA 57.547 42.857 1.62 0.00 35.58 3.41
204 205 3.990469 TCATCGTTCTGAAGAAAGCACTC 59.010 43.478 1.62 0.00 35.58 3.51
205 206 3.995199 TCATCGTTCTGAAGAAAGCACT 58.005 40.909 1.62 0.00 35.58 4.40
206 207 4.732285 TTCATCGTTCTGAAGAAAGCAC 57.268 40.909 1.62 0.00 31.75 4.40
214 215 2.416747 CAGTGGCTTCATCGTTCTGAA 58.583 47.619 0.00 0.00 34.14 3.02
215 216 1.941209 GCAGTGGCTTCATCGTTCTGA 60.941 52.381 0.00 0.00 36.96 3.27
216 217 0.445436 GCAGTGGCTTCATCGTTCTG 59.555 55.000 0.00 0.00 36.96 3.02
217 218 1.016130 CGCAGTGGCTTCATCGTTCT 61.016 55.000 0.00 0.00 38.10 3.01
218 219 1.421485 CGCAGTGGCTTCATCGTTC 59.579 57.895 0.00 0.00 38.10 3.95
219 220 2.680913 GCGCAGTGGCTTCATCGTT 61.681 57.895 0.30 0.00 38.10 3.85
220 221 3.121030 GCGCAGTGGCTTCATCGT 61.121 61.111 0.30 0.00 38.10 3.73
221 222 3.869272 GGCGCAGTGGCTTCATCG 61.869 66.667 10.83 0.00 40.72 3.84
228 229 2.103042 CAACTAGAGGCGCAGTGGC 61.103 63.158 10.83 0.00 45.27 5.01
229 230 0.320771 AACAACTAGAGGCGCAGTGG 60.321 55.000 10.83 3.76 0.00 4.00
230 231 1.195448 CAAACAACTAGAGGCGCAGTG 59.805 52.381 10.83 1.89 0.00 3.66
231 232 1.202651 ACAAACAACTAGAGGCGCAGT 60.203 47.619 10.83 0.00 0.00 4.40
232 233 1.512926 ACAAACAACTAGAGGCGCAG 58.487 50.000 10.83 0.00 0.00 5.18
233 234 1.961793 AACAAACAACTAGAGGCGCA 58.038 45.000 10.83 0.00 0.00 6.09
234 235 4.477302 TTTAACAAACAACTAGAGGCGC 57.523 40.909 0.00 0.00 0.00 6.53
255 256 7.124448 ACTCGACTCCTATCTACAGGAATTTTT 59.876 37.037 0.00 0.00 44.18 1.94
256 257 6.608002 ACTCGACTCCTATCTACAGGAATTTT 59.392 38.462 0.00 0.00 44.18 1.82
257 258 6.130569 ACTCGACTCCTATCTACAGGAATTT 58.869 40.000 0.00 0.00 44.18 1.82
258 259 5.697067 ACTCGACTCCTATCTACAGGAATT 58.303 41.667 0.00 0.00 44.18 2.17
259 260 5.310451 GACTCGACTCCTATCTACAGGAAT 58.690 45.833 0.00 0.00 44.18 3.01
260 261 4.706035 GACTCGACTCCTATCTACAGGAA 58.294 47.826 0.00 0.00 44.18 3.36
261 262 3.243805 CGACTCGACTCCTATCTACAGGA 60.244 52.174 0.00 0.00 42.62 3.86
262 263 3.061322 CGACTCGACTCCTATCTACAGG 58.939 54.545 0.00 0.00 37.00 4.00
263 264 3.061322 CCGACTCGACTCCTATCTACAG 58.939 54.545 0.00 0.00 0.00 2.74
264 265 2.433604 ACCGACTCGACTCCTATCTACA 59.566 50.000 0.00 0.00 0.00 2.74
265 266 3.110447 ACCGACTCGACTCCTATCTAC 57.890 52.381 0.00 0.00 0.00 2.59
266 267 4.525874 TCATACCGACTCGACTCCTATCTA 59.474 45.833 0.00 0.00 0.00 1.98
267 268 3.324268 TCATACCGACTCGACTCCTATCT 59.676 47.826 0.00 0.00 0.00 1.98
268 269 3.432933 GTCATACCGACTCGACTCCTATC 59.567 52.174 0.00 0.00 41.81 2.08
269 270 3.401182 GTCATACCGACTCGACTCCTAT 58.599 50.000 0.00 0.00 41.81 2.57
270 271 2.800985 CGTCATACCGACTCGACTCCTA 60.801 54.545 0.00 0.00 42.98 2.94
271 272 1.666054 GTCATACCGACTCGACTCCT 58.334 55.000 0.00 0.00 41.81 3.69
272 273 0.304098 CGTCATACCGACTCGACTCC 59.696 60.000 0.00 0.00 42.98 3.85
273 274 1.284657 TCGTCATACCGACTCGACTC 58.715 55.000 0.00 0.00 42.98 3.36
274 275 1.396301 GTTCGTCATACCGACTCGACT 59.604 52.381 0.00 0.00 42.98 4.18
275 276 1.807738 GTTCGTCATACCGACTCGAC 58.192 55.000 0.00 0.00 42.98 4.20
276 277 0.371301 CGTTCGTCATACCGACTCGA 59.629 55.000 0.00 0.00 42.98 4.04
277 278 0.588233 CCGTTCGTCATACCGACTCG 60.588 60.000 0.00 0.00 42.98 4.18
278 279 0.449388 ACCGTTCGTCATACCGACTC 59.551 55.000 0.00 0.00 42.98 3.36
279 280 0.883833 AACCGTTCGTCATACCGACT 59.116 50.000 0.00 0.00 42.98 4.18
280 281 0.986992 CAACCGTTCGTCATACCGAC 59.013 55.000 0.00 0.00 41.62 4.79
281 282 0.109179 CCAACCGTTCGTCATACCGA 60.109 55.000 0.00 0.00 34.52 4.69
282 283 0.109179 TCCAACCGTTCGTCATACCG 60.109 55.000 0.00 0.00 0.00 4.02
283 284 2.199236 GATCCAACCGTTCGTCATACC 58.801 52.381 0.00 0.00 0.00 2.73
294 295 1.097547 GGCATCTGTGGATCCAACCG 61.098 60.000 18.20 7.94 0.00 4.44
315 316 7.646130 CGAGACTATCAAGTTATCCTCTGTTTC 59.354 40.741 0.00 0.00 35.56 2.78
327 328 2.029290 ACAACGGCGAGACTATCAAGTT 60.029 45.455 16.62 0.00 35.56 2.66
335 336 2.661866 GTGCACAACGGCGAGACT 60.662 61.111 16.62 0.00 36.28 3.24
340 341 1.326576 CTAAATTGTGCACAACGGCG 58.673 50.000 33.29 18.25 38.86 6.46
358 359 1.676014 GCTTCACATGTTACGCCTCCT 60.676 52.381 0.00 0.00 0.00 3.69
361 362 0.036164 TGGCTTCACATGTTACGCCT 59.964 50.000 23.39 0.00 38.33 5.52
362 363 0.168128 GTGGCTTCACATGTTACGCC 59.832 55.000 18.14 18.14 40.91 5.68
363 364 0.168128 GGTGGCTTCACATGTTACGC 59.832 55.000 0.00 0.00 42.91 4.42
364 365 0.442310 CGGTGGCTTCACATGTTACG 59.558 55.000 0.00 0.00 42.91 3.18
394 395 2.122783 TGGAATTAACCCTCAAGCGG 57.877 50.000 0.00 0.00 0.00 5.52
397 398 7.651027 AAGAATGATGGAATTAACCCTCAAG 57.349 36.000 0.00 0.00 37.90 3.02
429 430 8.731605 AGCTGAAGACTTAAAATAAGTTAAGCC 58.268 33.333 15.74 0.00 42.45 4.35
484 485 2.359354 CCAAATGTCGCCCGTCCA 60.359 61.111 0.00 0.00 0.00 4.02
519 521 7.042456 ACGAAGCACTAATTCTGCATAAGTATG 60.042 37.037 9.95 0.00 37.08 2.39
546 549 7.028361 AGTGTAAGTAAAGTAAGCTAAGCTCG 58.972 38.462 0.00 0.00 38.25 5.03
737 760 3.132111 ACTTTTGTCCGGAGCAAAAATGT 59.868 39.130 28.61 23.95 0.00 2.71
790 819 6.205658 GCTCTCTTAAGGTTGACTTTTCATGT 59.794 38.462 1.85 0.00 40.64 3.21
794 823 5.992217 TCTGCTCTCTTAAGGTTGACTTTTC 59.008 40.000 1.85 0.00 40.64 2.29
889 4125 1.024046 TGTGTGTGTGTGTGTGGAGC 61.024 55.000 0.00 0.00 0.00 4.70
901 4152 1.063912 GGATGTGTGTGTGTGTGTGTG 59.936 52.381 0.00 0.00 0.00 3.82
908 4159 1.134128 TGCTCAAGGATGTGTGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
909 4160 1.534163 CTGCTCAAGGATGTGTGTGTG 59.466 52.381 0.00 0.00 0.00 3.82
910 4161 1.141657 ACTGCTCAAGGATGTGTGTGT 59.858 47.619 0.00 0.00 0.00 3.72
911 4162 1.888215 ACTGCTCAAGGATGTGTGTG 58.112 50.000 0.00 0.00 0.00 3.82
912 4163 2.158769 TCAACTGCTCAAGGATGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
913 4164 2.483106 CTCAACTGCTCAAGGATGTGTG 59.517 50.000 0.00 0.00 0.00 3.82
914 4165 2.775890 CTCAACTGCTCAAGGATGTGT 58.224 47.619 0.00 0.00 0.00 3.72
915 4166 1.467734 GCTCAACTGCTCAAGGATGTG 59.532 52.381 0.00 0.00 0.00 3.21
916 4167 1.350351 AGCTCAACTGCTCAAGGATGT 59.650 47.619 0.00 0.00 39.34 3.06
917 4168 2.110901 AGCTCAACTGCTCAAGGATG 57.889 50.000 0.00 0.00 39.34 3.51
918 4169 2.093235 GGTAGCTCAACTGCTCAAGGAT 60.093 50.000 0.00 0.00 42.97 3.24
919 4170 1.276421 GGTAGCTCAACTGCTCAAGGA 59.724 52.381 0.00 0.00 42.97 3.36
937 4188 3.007635 GCTCGTGGCTGTTAATTAAGGT 58.992 45.455 0.00 0.00 38.06 3.50
948 4202 1.718757 GGCTTATTGGCTCGTGGCTG 61.719 60.000 12.46 0.00 41.46 4.85
1029 4295 4.697756 GCAGTGGCCAGCACCGTA 62.698 66.667 5.11 0.00 0.00 4.02
1111 8840 1.455383 CCGCCAACAAGCAGGAAACT 61.455 55.000 0.00 0.00 46.44 2.66
1160 8889 2.064762 CAGTCGACTTCTTGGAGCAAG 58.935 52.381 17.26 0.00 42.25 4.01
1236 8965 1.667830 GCAGTGTTGGACGCTAGCA 60.668 57.895 16.45 0.00 36.71 3.49
1239 8968 2.048597 CCGCAGTGTTGGACGCTA 60.049 61.111 0.00 0.00 36.71 4.26
1324 9053 1.069090 TGCCGCAGTTCTTCTCGTT 59.931 52.632 0.00 0.00 0.00 3.85
1327 9056 1.004440 AGGTGCCGCAGTTCTTCTC 60.004 57.895 0.00 0.00 0.00 2.87
1445 9174 1.870064 AATTGGATCTGCCCCTTTGG 58.130 50.000 0.00 0.00 34.97 3.28
1446 9175 4.897670 AGATTAATTGGATCTGCCCCTTTG 59.102 41.667 5.62 0.00 32.79 2.77
1447 9176 5.143369 GAGATTAATTGGATCTGCCCCTTT 58.857 41.667 9.96 0.00 34.13 3.11
1448 9177 4.168675 TGAGATTAATTGGATCTGCCCCTT 59.831 41.667 9.96 0.00 34.13 3.95
1449 9178 3.723681 TGAGATTAATTGGATCTGCCCCT 59.276 43.478 9.96 0.00 34.13 4.79
1450 9179 4.077822 CTGAGATTAATTGGATCTGCCCC 58.922 47.826 9.96 0.00 34.13 5.80
1451 9180 4.723309 ACTGAGATTAATTGGATCTGCCC 58.277 43.478 9.96 0.00 34.13 5.36
1452 9181 5.371526 TGACTGAGATTAATTGGATCTGCC 58.628 41.667 9.96 0.00 34.13 4.85
1453 9182 6.709397 TGATGACTGAGATTAATTGGATCTGC 59.291 38.462 9.96 4.54 34.13 4.26
1454 9183 8.672823 TTGATGACTGAGATTAATTGGATCTG 57.327 34.615 9.96 1.90 34.13 2.90
1455 9184 9.863650 ATTTGATGACTGAGATTAATTGGATCT 57.136 29.630 6.01 6.01 36.60 2.75
1457 9186 9.636789 TGATTTGATGACTGAGATTAATTGGAT 57.363 29.630 0.00 0.00 0.00 3.41
1458 9187 9.465199 TTGATTTGATGACTGAGATTAATTGGA 57.535 29.630 0.00 0.00 0.00 3.53
1459 9188 9.731819 CTTGATTTGATGACTGAGATTAATTGG 57.268 33.333 0.00 0.00 0.00 3.16
1462 9191 9.676861 TGACTTGATTTGATGACTGAGATTAAT 57.323 29.630 0.00 0.00 0.00 1.40
1463 9192 9.506018 TTGACTTGATTTGATGACTGAGATTAA 57.494 29.630 0.00 0.00 0.00 1.40
1464 9193 9.676861 ATTGACTTGATTTGATGACTGAGATTA 57.323 29.630 0.00 0.00 0.00 1.75
1465 9194 7.991084 TTGACTTGATTTGATGACTGAGATT 57.009 32.000 0.00 0.00 0.00 2.40
1466 9195 7.282675 GGATTGACTTGATTTGATGACTGAGAT 59.717 37.037 0.00 0.00 0.00 2.75
1467 9196 6.596888 GGATTGACTTGATTTGATGACTGAGA 59.403 38.462 0.00 0.00 0.00 3.27
1468 9197 6.373495 TGGATTGACTTGATTTGATGACTGAG 59.627 38.462 0.00 0.00 0.00 3.35
1469 9198 6.240145 TGGATTGACTTGATTTGATGACTGA 58.760 36.000 0.00 0.00 0.00 3.41
1470 9199 6.505044 TGGATTGACTTGATTTGATGACTG 57.495 37.500 0.00 0.00 0.00 3.51
1471 9200 6.348786 CGTTGGATTGACTTGATTTGATGACT 60.349 38.462 0.00 0.00 0.00 3.41
1472 9201 5.796935 CGTTGGATTGACTTGATTTGATGAC 59.203 40.000 0.00 0.00 0.00 3.06
1473 9202 5.704978 TCGTTGGATTGACTTGATTTGATGA 59.295 36.000 0.00 0.00 0.00 2.92
1474 9203 5.796935 GTCGTTGGATTGACTTGATTTGATG 59.203 40.000 0.00 0.00 32.37 3.07
1475 9204 5.106157 GGTCGTTGGATTGACTTGATTTGAT 60.106 40.000 0.00 0.00 35.45 2.57
1476 9205 4.215399 GGTCGTTGGATTGACTTGATTTGA 59.785 41.667 0.00 0.00 35.45 2.69
1477 9206 4.216257 AGGTCGTTGGATTGACTTGATTTG 59.784 41.667 0.00 0.00 35.45 2.32
1478 9207 4.398319 AGGTCGTTGGATTGACTTGATTT 58.602 39.130 0.00 0.00 35.45 2.17
1479 9208 4.021102 AGGTCGTTGGATTGACTTGATT 57.979 40.909 0.00 0.00 35.45 2.57
1480 9209 3.703001 AGGTCGTTGGATTGACTTGAT 57.297 42.857 0.00 0.00 35.45 2.57
1481 9210 3.830178 TCTAGGTCGTTGGATTGACTTGA 59.170 43.478 0.00 0.00 35.45 3.02
1482 9211 3.927142 GTCTAGGTCGTTGGATTGACTTG 59.073 47.826 0.00 0.00 35.45 3.16
1483 9212 3.833070 AGTCTAGGTCGTTGGATTGACTT 59.167 43.478 0.00 0.00 35.45 3.01
1484 9213 3.193691 CAGTCTAGGTCGTTGGATTGACT 59.806 47.826 0.00 0.00 35.45 3.41
1485 9214 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
1486 9215 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
1487 9216 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
1488 9217 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
1489 9218 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
1490 9219 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
1491 9220 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
1492 9221 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
1493 9222 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
1494 9223 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
1495 9224 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
1496 9225 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
1497 9226 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
1498 9227 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
1499 9228 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
1500 9229 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
1501 9230 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
1502 9231 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
1503 9232 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
1504 9233 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
1505 9234 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
1506 9235 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
1507 9236 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
1508 9237 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
1509 9238 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
1510 9239 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
1511 9240 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
1514 9243 0.582005 AAACTTGTTGAGCGCTCGAC 59.418 50.000 39.44 39.44 42.86 4.20
1515 9244 2.058798 CTAAACTTGTTGAGCGCTCGA 58.941 47.619 30.75 27.40 0.00 4.04
1516 9245 1.462541 GCTAAACTTGTTGAGCGCTCG 60.463 52.381 30.75 18.98 0.00 5.03
1517 9246 2.233738 GCTAAACTTGTTGAGCGCTC 57.766 50.000 30.42 30.42 0.00 5.03
1521 9250 3.493503 ACTACACGCTAAACTTGTTGAGC 59.506 43.478 11.77 11.77 32.20 4.26
1522 9251 5.652744 AACTACACGCTAAACTTGTTGAG 57.347 39.130 0.00 0.00 32.20 3.02
1523 9252 7.718272 ATTAACTACACGCTAAACTTGTTGA 57.282 32.000 0.00 0.00 32.20 3.18
1524 9253 8.776680 AAATTAACTACACGCTAAACTTGTTG 57.223 30.769 0.00 0.00 32.20 3.33
1525 9254 8.614346 TGAAATTAACTACACGCTAAACTTGTT 58.386 29.630 0.00 0.00 32.20 2.83
1526 9255 8.145316 TGAAATTAACTACACGCTAAACTTGT 57.855 30.769 0.00 0.00 34.65 3.16
1527 9256 9.051027 CATGAAATTAACTACACGCTAAACTTG 57.949 33.333 0.00 0.00 0.00 3.16
1528 9257 7.749126 GCATGAAATTAACTACACGCTAAACTT 59.251 33.333 0.00 0.00 0.00 2.66
1529 9258 7.241376 GCATGAAATTAACTACACGCTAAACT 58.759 34.615 0.00 0.00 0.00 2.66
1530 9259 6.468000 GGCATGAAATTAACTACACGCTAAAC 59.532 38.462 0.00 0.00 0.00 2.01
1531 9260 6.149640 TGGCATGAAATTAACTACACGCTAAA 59.850 34.615 0.00 0.00 0.00 1.85
1532 9261 5.644206 TGGCATGAAATTAACTACACGCTAA 59.356 36.000 0.00 0.00 0.00 3.09
1533 9262 5.179533 TGGCATGAAATTAACTACACGCTA 58.820 37.500 0.00 0.00 0.00 4.26
1534 9263 4.006989 TGGCATGAAATTAACTACACGCT 58.993 39.130 0.00 0.00 0.00 5.07
1535 9264 4.349663 TGGCATGAAATTAACTACACGC 57.650 40.909 0.00 0.00 0.00 5.34
1590 9319 9.658799 GTGCATGCGGATATTATATAGGATATT 57.341 33.333 14.09 0.00 0.00 1.28
1591 9320 9.040259 AGTGCATGCGGATATTATATAGGATAT 57.960 33.333 14.09 0.00 0.00 1.63
1592 9321 8.422577 AGTGCATGCGGATATTATATAGGATA 57.577 34.615 14.09 0.00 0.00 2.59
1593 9322 7.308450 AGTGCATGCGGATATTATATAGGAT 57.692 36.000 14.09 0.00 0.00 3.24
1594 9323 6.731292 AGTGCATGCGGATATTATATAGGA 57.269 37.500 14.09 0.00 0.00 2.94
1595 9324 8.887036 TTAAGTGCATGCGGATATTATATAGG 57.113 34.615 14.09 0.00 0.00 2.57
1601 9330 9.884636 AAGTATATTAAGTGCATGCGGATATTA 57.115 29.630 14.09 4.65 0.00 0.98
1602 9331 8.792830 AAGTATATTAAGTGCATGCGGATATT 57.207 30.769 14.09 5.62 0.00 1.28
1603 9332 8.260818 AGAAGTATATTAAGTGCATGCGGATAT 58.739 33.333 14.09 13.06 0.00 1.63
1604 9333 7.611770 AGAAGTATATTAAGTGCATGCGGATA 58.388 34.615 14.09 6.94 0.00 2.59
1605 9334 6.467677 AGAAGTATATTAAGTGCATGCGGAT 58.532 36.000 14.09 3.59 0.00 4.18
1606 9335 5.853936 AGAAGTATATTAAGTGCATGCGGA 58.146 37.500 14.09 0.00 0.00 5.54
1607 9336 7.652300 TTAGAAGTATATTAAGTGCATGCGG 57.348 36.000 14.09 0.00 0.00 5.69
1624 9353 8.726988 ACGTGCAATGTACATTAATTTAGAAGT 58.273 29.630 20.39 8.64 31.53 3.01
1625 9354 8.998989 CACGTGCAATGTACATTAATTTAGAAG 58.001 33.333 20.39 6.59 31.53 2.85
1626 9355 8.508062 ACACGTGCAATGTACATTAATTTAGAA 58.492 29.630 20.39 0.00 31.53 2.10
1627 9356 8.035165 ACACGTGCAATGTACATTAATTTAGA 57.965 30.769 20.39 0.00 31.53 2.10
1639 9368 5.409826 TGATTCAATGTACACGTGCAATGTA 59.590 36.000 17.22 7.78 31.53 2.29
1640 9369 4.215185 TGATTCAATGTACACGTGCAATGT 59.785 37.500 17.22 9.63 35.61 2.71
1641 9370 4.721142 TGATTCAATGTACACGTGCAATG 58.279 39.130 17.22 10.05 0.00 2.82
1642 9371 5.048782 ACTTGATTCAATGTACACGTGCAAT 60.049 36.000 17.22 3.75 0.00 3.56
1643 9372 4.274705 ACTTGATTCAATGTACACGTGCAA 59.725 37.500 17.22 6.60 0.00 4.08
1644 9373 3.812609 ACTTGATTCAATGTACACGTGCA 59.187 39.130 17.22 6.92 0.00 4.57
1645 9374 4.404507 ACTTGATTCAATGTACACGTGC 57.595 40.909 17.22 0.00 0.00 5.34
1646 9375 5.984627 TGAACTTGATTCAATGTACACGTG 58.015 37.500 15.48 15.48 44.59 4.49
1656 9385 6.867816 GCATGGTAATGTTGAACTTGATTCAA 59.132 34.615 0.00 0.00 45.73 2.69
1657 9386 6.389091 GCATGGTAATGTTGAACTTGATTCA 58.611 36.000 0.00 0.00 39.33 2.57
1658 9387 5.512788 CGCATGGTAATGTTGAACTTGATTC 59.487 40.000 0.00 0.00 36.08 2.52
1713 9442 6.294473 GCATGGGCACATAGCTATATATCTT 58.706 40.000 0.00 0.00 44.79 2.40
1732 9555 1.088340 CCACTCTCGCTTCTGCATGG 61.088 60.000 0.00 0.00 39.64 3.66
1741 9564 0.975040 AGCTCAATCCCACTCTCGCT 60.975 55.000 0.00 0.00 0.00 4.93
1861 9684 2.064434 TCAATGCCACAACACCAAGA 57.936 45.000 0.00 0.00 0.00 3.02
1885 9708 8.862325 TTCATTGATCAACAACATTACTAGGT 57.138 30.769 11.07 0.00 41.52 3.08
1929 9756 4.768448 TCTGATTCACGGGTAGAAACACTA 59.232 41.667 0.00 0.00 0.00 2.74
1933 9760 3.367025 CGTTCTGATTCACGGGTAGAAAC 59.633 47.826 0.00 0.00 32.58 2.78
1980 9807 7.542130 GGATGTGTTACCAAAATCTCAACAATC 59.458 37.037 0.00 0.00 31.44 2.67
2021 10404 6.295011 CGAGAAAGCCTATTCCACATATCTCT 60.295 42.308 0.00 0.00 0.00 3.10
2022 10405 5.866633 CGAGAAAGCCTATTCCACATATCTC 59.133 44.000 0.00 0.00 0.00 2.75
2036 10419 7.731054 AGATCTGAATAATAACGAGAAAGCCT 58.269 34.615 0.00 0.00 0.00 4.58
2037 10420 7.954788 AGATCTGAATAATAACGAGAAAGCC 57.045 36.000 0.00 0.00 0.00 4.35
2084 10553 2.534349 CGGTTTCACCTCGATCATTACG 59.466 50.000 0.00 0.00 35.66 3.18
2121 10590 6.827251 CCAATGGCTATGATGTTAGATGCTAT 59.173 38.462 0.00 0.00 0.00 2.97
2207 10700 3.713858 TGTGATGAGCAACAAGTTTGG 57.286 42.857 0.00 0.00 0.00 3.28
2248 10741 8.510243 TCATATAGGCTACAATTTATGCATGG 57.490 34.615 10.16 0.00 0.00 3.66
2258 10751 7.386851 AGCGTGTTATTCATATAGGCTACAAT 58.613 34.615 0.00 0.00 0.00 2.71
2277 10770 1.953686 ACATAGCCAAACAAAGCGTGT 59.046 42.857 0.00 0.00 44.64 4.49
2302 10795 3.526534 GTTAACAAAGGGCTGCAACAAA 58.473 40.909 0.50 0.00 0.00 2.83
2330 10823 6.106003 GGCAATGGTAAACTCCTAATTTTGG 58.894 40.000 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.