Multiple sequence alignment - TraesCS6B01G382700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G382700 chr6B 100.000 5960 0 0 1 5960 657937334 657943293 0.000000e+00 11007.0
1 TraesCS6B01G382700 chr6B 86.861 411 43 7 5525 5928 518385458 518385052 3.280000e-122 449.0
2 TraesCS6B01G382700 chr6B 88.000 300 24 5 5202 5491 577082462 577082165 1.590000e-90 344.0
3 TraesCS6B01G382700 chr6B 93.939 99 5 1 2313 2410 423189607 423189509 1.340000e-31 148.0
4 TraesCS6B01G382700 chr6B 86.179 123 6 7 5430 5541 518386292 518386170 8.110000e-24 122.0
5 TraesCS6B01G382700 chr6B 76.440 191 33 12 582 765 36144801 36144986 6.360000e-15 93.5
6 TraesCS6B01G382700 chr6B 85.366 82 8 3 5430 5507 24998932 24999013 1.380000e-11 82.4
7 TraesCS6B01G382700 chr6B 92.683 41 2 1 5502 5541 577082131 577082091 2.320000e-04 58.4
8 TraesCS6B01G382700 chr6D 97.377 3622 76 12 836 4449 434507785 434511395 0.000000e+00 6144.0
9 TraesCS6B01G382700 chr6D 92.426 713 26 9 4516 5202 434511506 434512216 0.000000e+00 992.0
10 TraesCS6B01G382700 chr6D 75.856 613 127 15 94 691 434320842 434320236 5.840000e-75 292.0
11 TraesCS6B01G382700 chr6D 80.312 320 54 7 6 317 338412568 338412886 3.590000e-57 233.0
12 TraesCS6B01G382700 chr6D 97.647 85 2 0 2320 2404 413410038 413410122 4.810000e-31 147.0
13 TraesCS6B01G382700 chr6D 75.850 294 50 12 212 502 54041272 54041547 4.850000e-26 130.0
14 TraesCS6B01G382700 chr6D 81.897 116 16 5 584 697 455083254 455083142 6.360000e-15 93.5
15 TraesCS6B01G382700 chr6A 89.007 1983 131 29 347 2323 581884738 581886639 0.000000e+00 2374.0
16 TraesCS6B01G382700 chr6A 90.644 1133 70 12 3299 4430 581887685 581888782 0.000000e+00 1472.0
17 TraesCS6B01G382700 chr6A 89.020 765 50 16 4459 5205 581888867 581889615 0.000000e+00 917.0
18 TraesCS6B01G382700 chr6A 88.697 752 51 15 2564 3314 581886953 581887671 0.000000e+00 887.0
19 TraesCS6B01G382700 chr6A 89.773 352 34 2 1 351 581864658 581865008 3.280000e-122 449.0
20 TraesCS6B01G382700 chr6A 82.524 103 15 3 594 695 558019905 558020005 2.960000e-13 87.9
21 TraesCS6B01G382700 chrUn 88.049 410 27 12 5525 5928 101164616 101165009 3.250000e-127 466.0
22 TraesCS6B01G382700 chr5D 86.635 419 47 7 3576 3987 65901770 65902186 7.040000e-124 455.0
23 TraesCS6B01G382700 chr5D 81.793 357 48 12 3592 3946 388099127 388099468 3.520000e-72 283.0
24 TraesCS6B01G382700 chr5D 80.000 330 37 12 4651 4980 65902946 65903246 3.620000e-52 217.0
25 TraesCS6B01G382700 chr5D 86.755 151 14 4 1118 1263 388097250 388097399 4.780000e-36 163.0
26 TraesCS6B01G382700 chr5D 89.815 108 6 4 5436 5538 319133251 319133358 3.750000e-27 134.0
27 TraesCS6B01G382700 chr5D 89.109 101 9 1 4020 4120 65902247 65902345 2.260000e-24 124.0
28 TraesCS6B01G382700 chr5D 79.167 96 17 3 415 508 497025080 497024986 4.990000e-06 63.9
29 TraesCS6B01G382700 chr2D 87.561 410 29 11 5525 5928 534304731 534304338 7.040000e-124 455.0
30 TraesCS6B01G382700 chr2D 83.992 506 38 23 5430 5928 596161376 596160907 4.240000e-121 446.0
31 TraesCS6B01G382700 chr2D 76.754 727 131 27 1 694 640994753 640995474 7.290000e-99 372.0
32 TraesCS6B01G382700 chr2D 75.452 664 130 27 4 643 130899095 130898441 5.840000e-75 292.0
33 TraesCS6B01G382700 chr2D 77.863 262 51 5 4 261 591540002 591539744 8.000000e-34 156.0
34 TraesCS6B01G382700 chr2D 85.185 81 10 2 215 294 478807141 478807062 1.380000e-11 82.4
35 TraesCS6B01G382700 chr3B 87.562 402 33 9 5527 5928 250347568 250347952 3.280000e-122 449.0
36 TraesCS6B01G382700 chr3B 76.590 692 125 27 1 676 475468351 475469021 4.420000e-91 346.0
37 TraesCS6B01G382700 chr3B 91.827 208 17 0 5200 5407 71327047 71326840 2.100000e-74 291.0
38 TraesCS6B01G382700 chr3B 88.785 107 12 0 589 695 760717169 760717063 1.350000e-26 132.0
39 TraesCS6B01G382700 chr3B 74.834 302 63 10 397 695 190973962 190973671 2.260000e-24 124.0
40 TraesCS6B01G382700 chr3B 84.483 116 12 4 5430 5541 171074786 171074673 6.320000e-20 110.0
41 TraesCS6B01G382700 chr3B 90.909 77 7 0 601 677 760785086 760785010 2.940000e-18 104.0
42 TraesCS6B01G382700 chr3B 93.182 44 3 0 650 693 25479101 25479144 1.390000e-06 65.8
43 TraesCS6B01G382700 chr4B 85.294 442 52 7 5525 5958 641539905 641540341 1.520000e-120 444.0
44 TraesCS6B01G382700 chr4B 82.812 448 59 14 5524 5960 623025547 623025107 9.370000e-103 385.0
45 TraesCS6B01G382700 chr2A 78.382 717 125 23 4 695 726289548 726288837 7.090000e-119 438.0
46 TraesCS6B01G382700 chr2A 85.194 412 35 14 5525 5928 704696946 704696553 3.350000e-107 399.0
47 TraesCS6B01G382700 chr2A 82.895 380 28 13 5194 5538 613359101 613359478 2.090000e-79 307.0
48 TraesCS6B01G382700 chr2A 77.273 374 71 9 7 372 726222513 726222146 2.180000e-49 207.0
49 TraesCS6B01G382700 chr2A 74.576 413 74 18 5571 5959 713245120 713245525 1.030000e-32 152.0
50 TraesCS6B01G382700 chr2A 90.991 111 9 1 2299 2408 560782279 560782169 1.340000e-31 148.0
51 TraesCS6B01G382700 chr2A 85.849 106 8 5 5436 5534 113363859 113363964 8.170000e-19 106.0
52 TraesCS6B01G382700 chr4D 84.855 449 50 9 5525 5960 393832650 393833093 2.550000e-118 436.0
53 TraesCS6B01G382700 chr4D 91.228 228 19 1 5200 5427 110622743 110622969 5.800000e-80 309.0
54 TraesCS6B01G382700 chr4D 94.792 96 4 1 2315 2409 69190482 69190387 1.340000e-31 148.0
55 TraesCS6B01G382700 chr1D 86.058 416 42 8 5525 5928 483888831 483889242 3.300000e-117 433.0
56 TraesCS6B01G382700 chr1D 90.952 210 15 4 5199 5407 25574338 25574132 4.550000e-71 279.0
57 TraesCS6B01G382700 chr1D 89.744 117 7 3 5430 5541 18691625 18691509 1.730000e-30 145.0
58 TraesCS6B01G382700 chr1D 91.358 81 7 0 5880 5960 483965589 483965669 1.760000e-20 111.0
59 TraesCS6B01G382700 chr1D 81.600 125 6 8 5434 5541 54194959 54194835 2.960000e-13 87.9
60 TraesCS6B01G382700 chr3D 85.167 418 46 9 5525 5929 89699940 89700354 1.200000e-111 414.0
61 TraesCS6B01G382700 chr3D 86.154 390 34 9 5525 5911 435314586 435314214 2.590000e-108 403.0
62 TraesCS6B01G382700 chr3D 91.342 231 19 1 5197 5427 56412221 56412450 1.250000e-81 315.0
63 TraesCS6B01G382700 chr3D 87.500 120 7 6 5430 5541 512986297 512986178 1.350000e-26 132.0
64 TraesCS6B01G382700 chr5A 83.452 423 52 11 3576 3987 55159745 55160160 1.570000e-100 377.0
65 TraesCS6B01G382700 chr5A 82.123 358 45 13 3592 3946 491289599 491289940 7.560000e-74 289.0
66 TraesCS6B01G382700 chr5A 81.481 216 33 4 2110 2320 55158377 55158590 2.860000e-38 171.0
67 TraesCS6B01G382700 chr5A 87.970 133 15 1 1118 1249 491287571 491287703 8.000000e-34 156.0
68 TraesCS6B01G382700 chr5A 90.090 111 6 5 5430 5538 426387828 426387935 8.050000e-29 139.0
69 TraesCS6B01G382700 chr5A 75.817 306 52 15 4020 4320 55160224 55160512 1.040000e-27 135.0
70 TraesCS6B01G382700 chr5B 83.130 409 47 10 3233 3626 381075079 381075480 2.640000e-93 353.0
71 TraesCS6B01G382700 chr5B 82.633 357 44 13 3592 3946 466776525 466776865 3.490000e-77 300.0
72 TraesCS6B01G382700 chr5B 83.636 275 37 7 3720 3987 65191581 65191308 9.920000e-63 252.0
73 TraesCS6B01G382700 chr5B 81.651 327 38 15 938 1255 65194511 65194198 9.920000e-63 252.0
74 TraesCS6B01G382700 chr5B 88.079 151 12 4 1118 1263 466773760 466773909 2.210000e-39 174.0
75 TraesCS6B01G382700 chr5B 93.878 98 6 0 2311 2408 461133820 461133917 1.340000e-31 148.0
76 TraesCS6B01G382700 chr5B 76.429 280 43 17 4048 4320 65191221 65190958 4.850000e-26 130.0
77 TraesCS6B01G382700 chr5B 84.800 125 5 9 5431 5541 539006852 539006728 4.880000e-21 113.0
78 TraesCS6B01G382700 chr7B 80.493 446 70 13 5525 5959 591145815 591146254 5.760000e-85 326.0
79 TraesCS6B01G382700 chr7B 81.341 343 28 10 5229 5538 494746280 494746619 4.610000e-61 246.0
80 TraesCS6B01G382700 chr7B 86.179 123 6 5 5430 5541 77427622 77427500 8.110000e-24 122.0
81 TraesCS6B01G382700 chr1B 81.295 417 63 7 5552 5958 634514330 634514741 2.070000e-84 324.0
82 TraesCS6B01G382700 chr1B 91.748 206 17 0 5202 5407 164861013 164860808 2.720000e-73 287.0
83 TraesCS6B01G382700 chr1B 83.471 121 4 11 5430 5534 164860755 164860635 1.370000e-16 99.0
84 TraesCS6B01G382700 chr1B 79.528 127 19 5 560 679 137498942 137499068 3.830000e-12 84.2
85 TraesCS6B01G382700 chr1B 90.476 63 5 1 5430 5491 62282994 62282932 1.380000e-11 82.4
86 TraesCS6B01G382700 chr1B 88.889 63 6 1 5430 5491 617974423 617974485 6.410000e-10 76.8
87 TraesCS6B01G382700 chr7A 82.796 372 23 16 5200 5541 681625964 681626324 1.620000e-75 294.0
88 TraesCS6B01G382700 chr7A 86.667 120 8 7 5430 5541 119591473 119591354 6.270000e-25 126.0
89 TraesCS6B01G382700 chr7A 86.486 111 6 6 5430 5538 4532245 4532348 4.880000e-21 113.0
90 TraesCS6B01G382700 chr7D 88.034 234 22 5 5199 5427 619411334 619411102 7.610000e-69 272.0
91 TraesCS6B01G382700 chr7D 97.753 89 2 0 2320 2408 98621974 98621886 2.880000e-33 154.0
92 TraesCS6B01G382700 chr7D 93.814 97 6 0 2315 2411 426776943 426777039 4.810000e-31 147.0
93 TraesCS6B01G382700 chr7D 91.463 82 6 1 5879 5960 635695637 635695557 1.760000e-20 111.0
94 TraesCS6B01G382700 chr7D 73.962 265 58 6 247 506 34309516 34309258 4.920000e-16 97.1
95 TraesCS6B01G382700 chr2B 90.385 208 18 2 5200 5407 25232605 25232400 7.610000e-69 272.0
96 TraesCS6B01G382700 chr2B 75.325 462 85 22 253 701 25635533 25635088 1.690000e-45 195.0
97 TraesCS6B01G382700 chr2B 93.939 99 6 0 2322 2420 653585348 653585446 3.720000e-32 150.0
98 TraesCS6B01G382700 chr3A 76.018 442 75 17 5543 5960 22423427 22422993 3.640000e-47 200.0
99 TraesCS6B01G382700 chr1A 95.238 63 2 1 5430 5491 462031690 462031628 1.370000e-16 99.0
100 TraesCS6B01G382700 chr1A 88.889 63 6 1 5430 5491 497588946 497589008 6.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G382700 chr6B 657937334 657943293 5959 False 11007.000000 11007 100.0000 1 5960 1 chr6B.!!$F3 5959
1 TraesCS6B01G382700 chr6B 518385052 518386292 1240 True 285.500000 449 86.5200 5430 5928 2 chr6B.!!$R2 498
2 TraesCS6B01G382700 chr6D 434507785 434512216 4431 False 3568.000000 6144 94.9015 836 5202 2 chr6D.!!$F4 4366
3 TraesCS6B01G382700 chr6D 434320236 434320842 606 True 292.000000 292 75.8560 94 691 1 chr6D.!!$R1 597
4 TraesCS6B01G382700 chr6A 581884738 581889615 4877 False 1412.500000 2374 89.3420 347 5205 4 chr6A.!!$F3 4858
5 TraesCS6B01G382700 chr5D 65901770 65903246 1476 False 265.333333 455 85.2480 3576 4980 3 chr5D.!!$F2 1404
6 TraesCS6B01G382700 chr5D 388097250 388099468 2218 False 223.000000 283 84.2740 1118 3946 2 chr5D.!!$F3 2828
7 TraesCS6B01G382700 chr2D 640994753 640995474 721 False 372.000000 372 76.7540 1 694 1 chr2D.!!$F1 693
8 TraesCS6B01G382700 chr2D 130898441 130899095 654 True 292.000000 292 75.4520 4 643 1 chr2D.!!$R1 639
9 TraesCS6B01G382700 chr3B 475468351 475469021 670 False 346.000000 346 76.5900 1 676 1 chr3B.!!$F3 675
10 TraesCS6B01G382700 chr2A 726288837 726289548 711 True 438.000000 438 78.3820 4 695 1 chr2A.!!$R4 691
11 TraesCS6B01G382700 chr5A 55158377 55160512 2135 False 227.666667 377 80.2500 2110 4320 3 chr5A.!!$F2 2210
12 TraesCS6B01G382700 chr5A 491287571 491289940 2369 False 222.500000 289 85.0465 1118 3946 2 chr5A.!!$F3 2828
13 TraesCS6B01G382700 chr5B 466773760 466776865 3105 False 237.000000 300 85.3560 1118 3946 2 chr5B.!!$F3 2828
14 TraesCS6B01G382700 chr5B 65190958 65194511 3553 True 211.333333 252 80.5720 938 4320 3 chr5B.!!$R2 3382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 277 0.030195 TAGATCATGGGAGGCCACCA 60.030 55.000 21.72 20.8 43.22 4.17 F
810 849 0.107410 TAGCCCTTGGGTATTGCGTG 60.107 55.000 7.61 0.0 34.28 5.34 F
1504 1735 0.388659 TGTTCATTGTGGCAACTGGC 59.611 50.000 0.00 0.0 43.74 4.85 F
1741 2000 2.872370 GCTTGAGCAATTTTCGCTGAT 58.128 42.857 0.00 0.0 40.63 2.90 F
2403 2673 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.0 0.00 4.20 F
3951 7005 5.067413 CGTCCTCTTCTACAGTATGGCTTTA 59.933 44.000 0.00 0.0 43.62 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1733 0.108089 AAAACAAACCACCGGTTGCC 60.108 50.000 2.97 0.00 46.20 4.52 R
2023 2285 0.539438 TGTTGTTAGGGGCAAGCCTG 60.539 55.000 11.40 0.00 36.10 4.85 R
2392 2662 2.027469 ACACAACTATTCCCTCCGTTCC 60.027 50.000 0.00 0.00 0.00 3.62 R
2815 4874 3.601443 AGTGAGTGATTCAGTAGCACC 57.399 47.619 8.83 0.00 37.70 5.01 R
4339 7434 1.973812 GGGCAGTCTGTTTGCTCCC 60.974 63.158 0.93 0.00 41.27 4.30 R
5868 9863 0.099259 CGCAGTGAATACCGTACGGA 59.901 55.000 39.52 23.13 38.96 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 0.971386 CAATGAAGGTTGGCTTGCCT 59.029 50.000 13.18 0.00 36.51 4.75
61 63 1.067354 CAATGAAGGTTGGCTTGCCTC 60.067 52.381 13.18 6.10 33.24 4.70
71 74 3.170362 CTTGCCTCCAACCCTCCA 58.830 61.111 0.00 0.00 0.00 3.86
75 78 0.846427 TGCCTCCAACCCTCCAGATT 60.846 55.000 0.00 0.00 0.00 2.40
80 83 1.299648 CAACCCTCCAGATTCGGCA 59.700 57.895 0.00 0.00 0.00 5.69
167 176 1.793581 GCATCGCGGTTGATGTCAA 59.206 52.632 6.13 0.00 45.98 3.18
201 210 2.087646 GAGTGGGGAAAGAAGTCATGC 58.912 52.381 0.00 0.00 0.00 4.06
268 277 0.030195 TAGATCATGGGAGGCCACCA 60.030 55.000 21.72 20.80 43.22 4.17
313 323 1.602237 CCACCACTCGCCAGGTTAT 59.398 57.895 0.00 0.00 35.52 1.89
317 327 2.116238 ACCACTCGCCAGGTTATACAT 58.884 47.619 0.00 0.00 33.39 2.29
318 328 2.504175 ACCACTCGCCAGGTTATACATT 59.496 45.455 0.00 0.00 33.39 2.71
319 329 3.054655 ACCACTCGCCAGGTTATACATTT 60.055 43.478 0.00 0.00 33.39 2.32
372 382 1.911766 GGTGACTGTCTTCCCCCGA 60.912 63.158 9.51 0.00 0.00 5.14
509 538 0.741221 GGAAGACATGTCGTGGGAGC 60.741 60.000 19.32 4.07 34.09 4.70
610 649 6.093495 TCGTCCAGTTTGTATGAAAATCATCC 59.907 38.462 0.00 0.00 38.26 3.51
627 666 4.979335 TCATCCGGGTTGCATATAATTCA 58.021 39.130 0.00 0.00 0.00 2.57
691 730 1.004440 GATGGCCAGCTCCCGTATC 60.004 63.158 15.35 0.00 0.00 2.24
692 731 2.456287 GATGGCCAGCTCCCGTATCC 62.456 65.000 15.35 0.00 0.00 2.59
693 732 4.301027 GGCCAGCTCCCGTATCCG 62.301 72.222 0.00 0.00 0.00 4.18
694 733 3.537874 GCCAGCTCCCGTATCCGT 61.538 66.667 0.00 0.00 0.00 4.69
695 734 3.090219 GCCAGCTCCCGTATCCGTT 62.090 63.158 0.00 0.00 0.00 4.44
699 738 1.588139 GCTCCCGTATCCGTTGACG 60.588 63.158 0.00 0.00 38.79 4.35
716 755 6.142817 CGTTGACGGATCTTTTCTTTTTCAT 58.857 36.000 0.00 0.00 35.37 2.57
722 761 5.402398 GGATCTTTTCTTTTTCATGGACGG 58.598 41.667 0.00 0.00 0.00 4.79
732 771 1.194218 TCATGGACGGATGCAGAAGA 58.806 50.000 0.00 0.00 0.00 2.87
807 846 1.166531 CGCTAGCCCTTGGGTATTGC 61.167 60.000 9.66 8.16 35.02 3.56
809 848 0.180406 CTAGCCCTTGGGTATTGCGT 59.820 55.000 7.61 0.00 35.02 5.24
810 849 0.107410 TAGCCCTTGGGTATTGCGTG 60.107 55.000 7.61 0.00 34.28 5.34
811 850 3.063743 GCCCTTGGGTATTGCGTGC 62.064 63.158 7.61 0.00 0.00 5.34
813 852 2.760159 CCTTGGGTATTGCGTGCGG 61.760 63.158 0.00 0.00 0.00 5.69
814 853 2.748251 TTGGGTATTGCGTGCGGG 60.748 61.111 0.00 0.00 0.00 6.13
818 857 4.514569 GTATTGCGTGCGGGCGTG 62.515 66.667 0.00 0.00 35.06 5.34
840 879 3.299190 GCCGCGCTCCTAGGAGAT 61.299 66.667 38.03 0.00 44.53 2.75
841 880 2.958576 CCGCGCTCCTAGGAGATC 59.041 66.667 38.03 26.17 44.53 2.75
842 881 1.602323 CCGCGCTCCTAGGAGATCT 60.602 63.158 38.03 0.00 44.53 2.75
867 906 1.530013 CCTTGCAGTTGGGCTTCCAG 61.530 60.000 0.00 0.00 42.30 3.86
1038 1078 1.199789 ACGTCGTCGCACAGGTAAATA 59.800 47.619 0.99 0.00 41.18 1.40
1046 1086 1.519898 ACAGGTAAATACGCCGGCG 60.520 57.895 44.88 44.88 46.03 6.46
1095 1135 2.908073 GCACCAAGTTGCTCCGTGG 61.908 63.158 10.68 6.61 39.59 4.94
1385 1616 6.327887 ACATTTTGGTGTAATTAAGGTTGGGT 59.672 34.615 0.00 0.00 0.00 4.51
1401 1632 2.110213 GTTGGGGTGCTGTGTCGA 59.890 61.111 0.00 0.00 0.00 4.20
1403 1634 3.177194 TTGGGGTGCTGTGTCGAGG 62.177 63.158 0.00 0.00 0.00 4.63
1456 1687 6.649141 ACGAATTATAGAATTGGCGATAAGCA 59.351 34.615 9.93 0.00 40.64 3.91
1459 1690 8.348051 GAATTATAGAATTGGCGATAAGCACGC 61.348 40.741 0.00 0.00 43.74 5.34
1481 1712 3.815401 CCCGGTCATAGATGTGGATTTTC 59.185 47.826 0.00 0.00 0.00 2.29
1485 1716 6.463049 CCGGTCATAGATGTGGATTTTCTAGT 60.463 42.308 0.00 0.00 0.00 2.57
1502 1733 3.814842 TCTAGTGTTCATTGTGGCAACTG 59.185 43.478 0.00 0.00 37.61 3.16
1503 1734 1.682854 AGTGTTCATTGTGGCAACTGG 59.317 47.619 0.00 0.00 37.61 4.00
1504 1735 0.388659 TGTTCATTGTGGCAACTGGC 59.611 50.000 0.00 0.00 43.74 4.85
1676 1917 9.817809 ATTTCTGCTAAAACAGATATCTTACGA 57.182 29.630 1.33 0.00 45.75 3.43
1678 1930 9.464714 TTCTGCTAAAACAGATATCTTACGATC 57.535 33.333 1.33 0.00 45.75 3.69
1713 1972 6.146837 CGAATGGAGAATATCTTACAGCCTTG 59.853 42.308 0.00 0.00 0.00 3.61
1741 2000 2.872370 GCTTGAGCAATTTTCGCTGAT 58.128 42.857 0.00 0.00 40.63 2.90
1794 2055 5.368989 ACTAGCACAATCCTGGCTATAAAC 58.631 41.667 0.00 0.00 39.22 2.01
2023 2285 6.653020 TGCAACCCACATATATAGATGATCC 58.347 40.000 14.15 0.00 0.00 3.36
2289 2556 7.736893 AGTTAGACAAAGGTTAGAGACATTGT 58.263 34.615 0.00 0.00 40.41 2.71
2290 2557 8.211629 AGTTAGACAAAGGTTAGAGACATTGTT 58.788 33.333 0.00 0.00 38.88 2.83
2291 2558 8.837389 GTTAGACAAAGGTTAGAGACATTGTTT 58.163 33.333 0.00 0.00 38.88 2.83
2320 2590 8.852135 CCATTTCCTTAACTGTACCTTTGTTTA 58.148 33.333 0.00 0.00 0.00 2.01
2325 2595 9.933723 TCCTTAACTGTACCTTTGTTTATACTC 57.066 33.333 0.00 0.00 0.00 2.59
2326 2596 9.159364 CCTTAACTGTACCTTTGTTTATACTCC 57.841 37.037 0.00 0.00 0.00 3.85
2327 2597 9.159364 CTTAACTGTACCTTTGTTTATACTCCC 57.841 37.037 0.00 0.00 0.00 4.30
2328 2598 6.947376 ACTGTACCTTTGTTTATACTCCCT 57.053 37.500 0.00 0.00 0.00 4.20
2329 2599 6.944096 ACTGTACCTTTGTTTATACTCCCTC 58.056 40.000 0.00 0.00 0.00 4.30
2330 2600 6.070366 ACTGTACCTTTGTTTATACTCCCTCC 60.070 42.308 0.00 0.00 0.00 4.30
2331 2601 4.482952 ACCTTTGTTTATACTCCCTCCG 57.517 45.455 0.00 0.00 0.00 4.63
2332 2602 3.842436 ACCTTTGTTTATACTCCCTCCGT 59.158 43.478 0.00 0.00 0.00 4.69
2333 2603 4.287845 ACCTTTGTTTATACTCCCTCCGTT 59.712 41.667 0.00 0.00 0.00 4.44
2334 2604 4.874396 CCTTTGTTTATACTCCCTCCGTTC 59.126 45.833 0.00 0.00 0.00 3.95
2335 2605 4.476628 TTGTTTATACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
2336 2606 3.443052 TGTTTATACTCCCTCCGTTCCA 58.557 45.455 0.00 0.00 0.00 3.53
2337 2607 3.839490 TGTTTATACTCCCTCCGTTCCAA 59.161 43.478 0.00 0.00 0.00 3.53
2338 2608 4.286549 TGTTTATACTCCCTCCGTTCCAAA 59.713 41.667 0.00 0.00 0.00 3.28
2339 2609 5.045432 TGTTTATACTCCCTCCGTTCCAAAT 60.045 40.000 0.00 0.00 0.00 2.32
2340 2610 5.703730 TTATACTCCCTCCGTTCCAAATT 57.296 39.130 0.00 0.00 0.00 1.82
2341 2611 6.811634 TTATACTCCCTCCGTTCCAAATTA 57.188 37.500 0.00 0.00 0.00 1.40
2342 2612 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2343 2613 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2344 2614 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2345 2615 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2346 2616 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
2347 2617 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
2348 2618 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
2349 2619 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
2350 2620 3.495377 TCCGTTCCAAATTACTTGTCGTG 59.505 43.478 0.00 0.00 32.65 4.35
2351 2621 3.364565 CCGTTCCAAATTACTTGTCGTGG 60.365 47.826 0.00 0.00 32.65 4.94
2352 2622 3.249080 CGTTCCAAATTACTTGTCGTGGT 59.751 43.478 0.00 0.00 32.65 4.16
2353 2623 4.260866 CGTTCCAAATTACTTGTCGTGGTT 60.261 41.667 0.00 0.00 32.65 3.67
2354 2624 5.584442 GTTCCAAATTACTTGTCGTGGTTT 58.416 37.500 0.00 0.00 32.65 3.27
2355 2625 5.838531 TCCAAATTACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 32.65 2.43
2356 2626 6.939132 TCCAAATTACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 32.65 1.52
2357 2627 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
2358 2628 6.543100 TCCAAATTACTTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 32.65 2.24
2359 2629 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
2360 2630 7.377662 CCAAATTACTTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 32.65 3.01
2361 2631 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
2362 2632 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
2363 2633 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
2364 2634 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
2365 2635 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
2366 2636 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
2367 2637 7.274686 ACTTGTCGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
2368 2638 6.853720 TGTCGTGGTTTTAGTTCAAATTTGA 58.146 32.000 16.91 16.91 34.92 2.69
2369 2639 7.313646 TGTCGTGGTTTTAGTTCAAATTTGAA 58.686 30.769 26.01 26.01 44.31 2.69
2383 2653 7.922505 TCAAATTTGAACTAAAACCATGACG 57.077 32.000 18.45 0.00 33.55 4.35
2384 2654 7.708051 TCAAATTTGAACTAAAACCATGACGA 58.292 30.769 18.45 0.00 33.55 4.20
2385 2655 7.860373 TCAAATTTGAACTAAAACCATGACGAG 59.140 33.333 18.45 0.00 33.55 4.18
2386 2656 6.877611 ATTTGAACTAAAACCATGACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
2387 2657 7.972832 ATTTGAACTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
2388 2658 7.789273 TTTGAACTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
2389 2659 7.972832 TTGAACTAAAACCATGACGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
2390 2660 7.972832 TGAACTAAAACCATGACGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
2391 2661 8.385898 TGAACTAAAACCATGACGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
2392 2662 8.286800 TGAACTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
2393 2663 7.141100 ACTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
2394 2664 6.938030 ACTAAAACCATGACGAGTAATTTGGA 59.062 34.615 0.00 0.00 0.00 3.53
2395 2665 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
2396 2666 5.622770 AACCATGACGAGTAATTTGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
2397 2667 3.682858 ACCATGACGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
2398 2668 3.063452 CCATGACGAGTAATTTGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
2399 2669 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2400 2670 3.581755 TGACGAGTAATTTGGAACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2401 2671 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2402 2672 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2403 2673 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2423 2777 8.254508 GGAGGGAATAGTTGTGTATGATATCTC 58.745 40.741 3.98 0.00 0.00 2.75
2487 4035 7.734924 TTAGACCATAGCTAGCATGATTTTG 57.265 36.000 18.83 7.85 0.00 2.44
2624 4572 9.303116 TGCTTGGTGTTATTTATTCTTTTCCTA 57.697 29.630 0.00 0.00 0.00 2.94
2987 5174 9.733556 TGTACACAAGGTATGATTGTCTATTTT 57.266 29.630 0.00 0.00 38.80 1.82
3830 6875 5.493809 TCCTTCCCTTAAATTGTAGGTTCG 58.506 41.667 5.62 0.00 0.00 3.95
3951 7005 5.067413 CGTCCTCTTCTACAGTATGGCTTTA 59.933 44.000 0.00 0.00 43.62 1.85
4005 7059 9.956720 CATTTCCATTAGAATGACTTGAATACC 57.043 33.333 3.76 0.00 38.70 2.73
4248 7343 8.618702 ATGGAAGCTGAATTCTGTCTTATATG 57.381 34.615 13.17 0.00 0.00 1.78
4349 7444 5.310451 AGTAATTTTAGTCGGGAGCAAACA 58.690 37.500 0.00 0.00 0.00 2.83
4408 7503 8.810427 GTCTGCACATGTATTTCATTTAAATGG 58.190 33.333 24.40 10.74 38.29 3.16
4452 7547 6.236409 TGATCATAATGGAGCATTCCTTCTC 58.764 40.000 0.00 0.00 44.36 2.87
4453 7548 5.635278 TCATAATGGAGCATTCCTTCTCA 57.365 39.130 0.00 0.00 44.36 3.27
4454 7549 5.371526 TCATAATGGAGCATTCCTTCTCAC 58.628 41.667 0.00 0.00 44.36 3.51
4455 7550 5.131642 TCATAATGGAGCATTCCTTCTCACT 59.868 40.000 0.00 0.00 44.36 3.41
4456 7551 4.313020 AATGGAGCATTCCTTCTCACTT 57.687 40.909 0.00 0.00 44.36 3.16
4457 7552 5.441718 AATGGAGCATTCCTTCTCACTTA 57.558 39.130 0.00 0.00 44.36 2.24
4502 7669 3.959495 ATGTGGAATAGCAGGGACAAT 57.041 42.857 0.00 0.00 0.00 2.71
4556 7731 2.890808 ATGGGTGTACTGTATGCTCG 57.109 50.000 0.00 0.00 0.00 5.03
4610 7785 0.678048 CTGTTACTTGCAGGGGCCTC 60.678 60.000 0.84 0.00 40.13 4.70
4718 7927 7.311092 TCTTAAAGATAAGGACACAACCTCA 57.689 36.000 0.00 0.00 39.62 3.86
4758 7967 6.073494 CCGTGTTGACATGAACATTGTAAGTA 60.073 38.462 0.00 0.00 38.11 2.24
4793 8002 1.638529 TCCCATCGGTTGGCAATTTT 58.361 45.000 1.92 0.00 44.97 1.82
4833 8042 1.191425 CGATCGACACTCGTTTGCAAA 59.809 47.619 10.26 8.05 41.35 3.68
4981 8190 0.605319 GCCGATTTGACACCTGACCA 60.605 55.000 0.00 0.00 0.00 4.02
5026 8238 2.498481 TCTGGATTGTGTAACCCCGTAG 59.502 50.000 0.00 0.00 34.36 3.51
5042 8254 1.802880 CGTAGCCCTGAACATCTTCGG 60.803 57.143 0.00 0.00 33.05 4.30
5126 8364 9.504705 TGTTAGGGGGTTATCTGTAATACTTAA 57.495 33.333 0.00 0.00 0.00 1.85
5190 8428 1.756538 CAACCTGAGCCCTGTTTGTTT 59.243 47.619 0.00 0.00 0.00 2.83
5205 8443 7.132863 CCTGTTTGTTTACTTGTTCTTAGAGC 58.867 38.462 0.00 0.00 0.00 4.09
5206 8444 7.201696 CCTGTTTGTTTACTTGTTCTTAGAGCA 60.202 37.037 0.00 0.00 0.00 4.26
5207 8445 8.220755 TGTTTGTTTACTTGTTCTTAGAGCAT 57.779 30.769 0.00 0.00 0.00 3.79
5208 8446 8.342634 TGTTTGTTTACTTGTTCTTAGAGCATC 58.657 33.333 0.00 0.00 0.00 3.91
5219 8457 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
5244 8482 1.641677 CGGGAGGCGCTAAAAATCG 59.358 57.895 7.64 0.00 0.00 3.34
5249 8487 3.509659 GCGCTAAAAATCGCCCCT 58.490 55.556 0.00 0.00 45.01 4.79
5250 8488 1.807226 GCGCTAAAAATCGCCCCTT 59.193 52.632 0.00 0.00 45.01 3.95
5251 8489 0.525455 GCGCTAAAAATCGCCCCTTG 60.525 55.000 0.00 0.00 45.01 3.61
5252 8490 0.100503 CGCTAAAAATCGCCCCTTGG 59.899 55.000 0.00 0.00 0.00 3.61
5254 8492 1.111277 CTAAAAATCGCCCCTTGGGG 58.889 55.000 20.18 20.18 44.57 4.96
5281 8519 4.763593 CGCTAAACCGCATGTTGG 57.236 55.556 4.76 4.76 37.23 3.77
5282 8520 1.136565 CGCTAAACCGCATGTTGGG 59.863 57.895 10.36 4.84 37.23 4.12
5290 8528 2.755469 GCATGTTGGGGGCGTGAT 60.755 61.111 0.00 0.00 0.00 3.06
5291 8529 3.067480 GCATGTTGGGGGCGTGATG 62.067 63.158 0.00 0.00 0.00 3.07
5292 8530 2.755469 ATGTTGGGGGCGTGATGC 60.755 61.111 0.00 0.00 45.38 3.91
5301 8539 2.512515 GCGTGATGCCCCTCAGTC 60.513 66.667 0.00 0.00 37.76 3.51
5302 8540 2.202797 CGTGATGCCCCTCAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
5303 8541 2.982130 GTGATGCCCCTCAGTCGT 59.018 61.111 0.00 0.00 0.00 4.34
5304 8542 1.448540 GTGATGCCCCTCAGTCGTG 60.449 63.158 0.00 0.00 0.00 4.35
5305 8543 2.187946 GATGCCCCTCAGTCGTGG 59.812 66.667 0.00 0.00 0.00 4.94
5306 8544 4.101448 ATGCCCCTCAGTCGTGGC 62.101 66.667 0.00 0.00 44.27 5.01
5312 8550 4.457496 CTCAGTCGTGGCGCCCAT 62.457 66.667 26.77 1.43 35.28 4.00
5313 8551 4.758251 TCAGTCGTGGCGCCCATG 62.758 66.667 26.77 17.24 41.56 3.66
5315 8553 3.387091 AGTCGTGGCGCCCATGTA 61.387 61.111 26.77 0.09 41.03 2.29
5316 8554 2.203015 GTCGTGGCGCCCATGTAT 60.203 61.111 26.77 0.00 41.03 2.29
5317 8555 1.817941 GTCGTGGCGCCCATGTATT 60.818 57.895 26.77 0.00 41.03 1.89
5318 8556 1.078072 TCGTGGCGCCCATGTATTT 60.078 52.632 26.77 0.00 41.03 1.40
5319 8557 0.678366 TCGTGGCGCCCATGTATTTT 60.678 50.000 26.77 0.00 41.03 1.82
5320 8558 0.172352 CGTGGCGCCCATGTATTTTT 59.828 50.000 26.77 0.00 35.92 1.94
5321 8559 1.639280 GTGGCGCCCATGTATTTTTG 58.361 50.000 26.77 0.00 35.28 2.44
5322 8560 1.203523 GTGGCGCCCATGTATTTTTGA 59.796 47.619 26.77 0.00 35.28 2.69
5323 8561 1.895798 TGGCGCCCATGTATTTTTGAA 59.104 42.857 26.77 0.00 0.00 2.69
5324 8562 2.300152 TGGCGCCCATGTATTTTTGAAA 59.700 40.909 26.77 0.00 0.00 2.69
5325 8563 3.244215 TGGCGCCCATGTATTTTTGAAAA 60.244 39.130 26.77 0.00 0.00 2.29
5326 8564 3.938334 GGCGCCCATGTATTTTTGAAAAT 59.062 39.130 18.11 6.88 41.24 1.82
5327 8565 4.394610 GGCGCCCATGTATTTTTGAAAATT 59.605 37.500 18.11 0.00 39.24 1.82
5328 8566 5.106357 GGCGCCCATGTATTTTTGAAAATTT 60.106 36.000 18.11 0.00 39.24 1.82
5329 8567 6.092807 GGCGCCCATGTATTTTTGAAAATTTA 59.907 34.615 18.11 0.00 39.24 1.40
5330 8568 7.361286 GGCGCCCATGTATTTTTGAAAATTTAA 60.361 33.333 18.11 0.00 39.24 1.52
5331 8569 8.017946 GCGCCCATGTATTTTTGAAAATTTAAA 58.982 29.630 6.98 0.00 39.24 1.52
5344 8582 9.704098 TTTGAAAATTTAAATTACGGCACAAAC 57.296 25.926 13.68 0.00 0.00 2.93
5345 8583 8.420374 TGAAAATTTAAATTACGGCACAAACA 57.580 26.923 13.68 1.31 0.00 2.83
5346 8584 9.046296 TGAAAATTTAAATTACGGCACAAACAT 57.954 25.926 13.68 0.00 0.00 2.71
5347 8585 9.312146 GAAAATTTAAATTACGGCACAAACATG 57.688 29.630 13.68 0.00 0.00 3.21
5348 8586 6.959671 ATTTAAATTACGGCACAAACATGG 57.040 33.333 0.00 0.00 0.00 3.66
5349 8587 2.362169 AATTACGGCACAAACATGGC 57.638 45.000 0.00 0.00 41.61 4.40
5350 8588 1.252175 ATTACGGCACAAACATGGCA 58.748 45.000 0.00 0.00 45.18 4.92
5351 8589 0.312416 TTACGGCACAAACATGGCAC 59.688 50.000 0.00 0.00 45.18 5.01
5352 8590 0.819666 TACGGCACAAACATGGCACA 60.820 50.000 0.00 0.00 45.18 4.57
5366 8604 3.902881 TGGCACAAATTCAACCAAACT 57.097 38.095 0.00 0.00 31.92 2.66
5367 8605 4.213564 TGGCACAAATTCAACCAAACTT 57.786 36.364 0.00 0.00 31.92 2.66
5368 8606 4.583871 TGGCACAAATTCAACCAAACTTT 58.416 34.783 0.00 0.00 31.92 2.66
5369 8607 4.394300 TGGCACAAATTCAACCAAACTTTG 59.606 37.500 0.00 0.00 31.92 2.77
5378 8616 1.207593 CCAAACTTTGGCGAGCTCG 59.792 57.895 31.37 31.37 45.17 5.03
5379 8617 1.507141 CCAAACTTTGGCGAGCTCGT 61.507 55.000 34.46 13.39 45.17 4.18
5380 8618 0.307760 CAAACTTTGGCGAGCTCGTT 59.692 50.000 34.46 18.58 42.22 3.85
5381 8619 0.586802 AAACTTTGGCGAGCTCGTTC 59.413 50.000 34.46 26.28 42.22 3.95
5382 8620 0.531974 AACTTTGGCGAGCTCGTTCA 60.532 50.000 34.46 28.29 42.22 3.18
5383 8621 0.320771 ACTTTGGCGAGCTCGTTCAT 60.321 50.000 34.46 16.63 42.22 2.57
5384 8622 1.067142 ACTTTGGCGAGCTCGTTCATA 60.067 47.619 34.46 24.52 42.22 2.15
5385 8623 2.205074 CTTTGGCGAGCTCGTTCATAT 58.795 47.619 34.46 0.00 42.22 1.78
5386 8624 2.309528 TTGGCGAGCTCGTTCATATT 57.690 45.000 34.46 0.00 42.22 1.28
5387 8625 2.309528 TGGCGAGCTCGTTCATATTT 57.690 45.000 34.46 0.00 42.22 1.40
5388 8626 3.446310 TGGCGAGCTCGTTCATATTTA 57.554 42.857 34.46 9.86 42.22 1.40
5389 8627 3.787785 TGGCGAGCTCGTTCATATTTAA 58.212 40.909 34.46 9.22 42.22 1.52
5390 8628 4.185394 TGGCGAGCTCGTTCATATTTAAA 58.815 39.130 34.46 8.56 42.22 1.52
5391 8629 4.632251 TGGCGAGCTCGTTCATATTTAAAA 59.368 37.500 34.46 7.93 42.22 1.52
5392 8630 5.122554 TGGCGAGCTCGTTCATATTTAAAAA 59.877 36.000 34.46 7.28 42.22 1.94
5393 8631 6.183360 TGGCGAGCTCGTTCATATTTAAAAAT 60.183 34.615 34.46 0.00 42.22 1.82
5394 8632 7.011576 TGGCGAGCTCGTTCATATTTAAAAATA 59.988 33.333 34.46 6.65 42.22 1.40
5395 8633 8.015658 GGCGAGCTCGTTCATATTTAAAAATAT 58.984 33.333 34.46 2.73 40.35 1.28
5396 8634 9.382244 GCGAGCTCGTTCATATTTAAAAATATT 57.618 29.630 34.46 0.00 39.14 1.28
5423 8661 2.700722 AAAAGCTACTAGGCTGCTCC 57.299 50.000 0.00 0.00 42.24 4.70
5425 8663 1.408969 AAGCTACTAGGCTGCTCCTC 58.591 55.000 0.00 0.00 43.20 3.71
5426 8664 0.821711 AGCTACTAGGCTGCTCCTCG 60.822 60.000 0.00 0.00 43.20 4.63
5427 8665 1.104577 GCTACTAGGCTGCTCCTCGT 61.105 60.000 0.00 4.96 43.20 4.18
5428 8666 1.394618 CTACTAGGCTGCTCCTCGTT 58.605 55.000 0.00 0.00 43.20 3.85
5448 8686 1.073763 TGCCCTTGCAGTTCTACATGT 59.926 47.619 2.69 2.69 44.23 3.21
5476 8714 1.614385 CTGTAGAACCGCGTGTAGTG 58.386 55.000 4.92 0.00 0.00 2.74
5477 8715 0.387622 TGTAGAACCGCGTGTAGTGC 60.388 55.000 4.92 0.00 0.00 4.40
5479 8717 2.531927 TAGAACCGCGTGTAGTGCCG 62.532 60.000 4.92 0.00 0.00 5.69
5574 9550 2.109799 CCGGCGCTGATTCTCCAT 59.890 61.111 20.25 0.00 0.00 3.41
5599 9575 4.465512 GCACTTGCATGTCCGGCG 62.466 66.667 0.00 0.00 41.59 6.46
5647 9623 1.226156 CGAGCTTCGTCCTCGTGAG 60.226 63.158 11.82 0.00 45.17 3.51
5738 9714 1.106944 GGCGAGAGGAGAGGGAAGAG 61.107 65.000 0.00 0.00 0.00 2.85
5773 9749 4.415332 GCGTCGGCGGTGAAGAGA 62.415 66.667 13.05 0.00 38.78 3.10
5780 9756 2.375766 GCGGTGAAGAGACTGTGCG 61.376 63.158 0.00 0.00 0.00 5.34
5868 9863 3.758035 CGCACGTCGTTCGGTATT 58.242 55.556 9.62 0.00 44.69 1.89
5869 9864 1.622269 CGCACGTCGTTCGGTATTC 59.378 57.895 9.62 0.00 44.69 1.75
5870 9865 1.736249 CGCACGTCGTTCGGTATTCC 61.736 60.000 9.62 0.00 44.69 3.01
5889 9884 0.524816 CGTACGGTATTCACTGCGCT 60.525 55.000 9.73 0.00 34.04 5.92
5945 9940 4.926860 GCAGTTTTGGCATTAATTCACC 57.073 40.909 0.00 0.00 0.00 4.02
5946 9941 4.314121 GCAGTTTTGGCATTAATTCACCA 58.686 39.130 0.00 0.00 0.00 4.17
5947 9942 4.152223 GCAGTTTTGGCATTAATTCACCAC 59.848 41.667 1.88 0.00 0.00 4.16
5948 9943 4.385447 CAGTTTTGGCATTAATTCACCACG 59.615 41.667 1.88 0.00 0.00 4.94
5949 9944 4.279671 AGTTTTGGCATTAATTCACCACGA 59.720 37.500 0.00 0.00 0.00 4.35
5950 9945 4.855715 TTTGGCATTAATTCACCACGAA 57.144 36.364 0.00 0.00 38.22 3.85
5951 9946 4.855715 TTGGCATTAATTCACCACGAAA 57.144 36.364 0.00 0.00 37.12 3.46
5952 9947 4.855715 TGGCATTAATTCACCACGAAAA 57.144 36.364 0.00 0.00 37.12 2.29
5953 9948 5.201713 TGGCATTAATTCACCACGAAAAA 57.798 34.783 0.00 0.00 37.12 1.94
5954 9949 4.985409 TGGCATTAATTCACCACGAAAAAC 59.015 37.500 0.00 0.00 37.12 2.43
5956 9951 4.912766 GCATTAATTCACCACGAAAAACGA 59.087 37.500 0.00 0.00 45.77 3.85
5957 9952 5.059221 GCATTAATTCACCACGAAAAACGAG 59.941 40.000 0.00 0.00 45.77 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 0.827507 TTGGAGGCAAGCCAACCTTC 60.828 55.000 21.39 8.35 40.32 3.46
46 48 1.232792 TTGGAGGCAAGCCAACCTT 59.767 52.632 21.39 0.00 40.32 3.50
60 62 1.910580 GCCGAATCTGGAGGGTTGGA 61.911 60.000 0.00 0.00 0.00 3.53
61 63 1.452108 GCCGAATCTGGAGGGTTGG 60.452 63.158 0.00 0.00 0.00 3.77
65 67 2.190578 GGTGCCGAATCTGGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
149 158 0.167908 TTTGACATCAACCGCGATGC 59.832 50.000 8.23 0.43 45.56 3.91
158 167 2.286713 CCTGACGCGTTTTTGACATCAA 60.287 45.455 15.53 0.00 0.00 2.57
159 168 1.262950 CCTGACGCGTTTTTGACATCA 59.737 47.619 15.53 1.68 0.00 3.07
160 169 1.950472 CCTGACGCGTTTTTGACATC 58.050 50.000 15.53 0.00 0.00 3.06
181 190 2.087646 GCATGACTTCTTTCCCCACTC 58.912 52.381 0.00 0.00 0.00 3.51
182 191 1.272147 GGCATGACTTCTTTCCCCACT 60.272 52.381 0.00 0.00 0.00 4.00
230 239 1.735198 CTTTTCCTCGCCGTACGCA 60.735 57.895 10.49 0.00 43.23 5.24
234 243 3.018856 TGATCTACTTTTCCTCGCCGTA 58.981 45.455 0.00 0.00 0.00 4.02
237 246 3.134458 CCATGATCTACTTTTCCTCGCC 58.866 50.000 0.00 0.00 0.00 5.54
272 281 1.606601 GGCCTTCTTGGGACCCAAC 60.607 63.158 22.74 11.86 38.75 3.77
300 309 3.054655 ACCAAATGTATAACCTGGCGAGT 60.055 43.478 0.00 0.00 0.00 4.18
307 317 4.705023 GGCAAGACACCAAATGTATAACCT 59.295 41.667 0.00 0.00 43.56 3.50
313 323 1.529226 CGGGCAAGACACCAAATGTA 58.471 50.000 0.00 0.00 43.56 2.29
317 327 1.826054 CACCGGGCAAGACACCAAA 60.826 57.895 6.32 0.00 0.00 3.28
318 328 2.203280 CACCGGGCAAGACACCAA 60.203 61.111 6.32 0.00 0.00 3.67
319 329 3.164977 TCACCGGGCAAGACACCA 61.165 61.111 6.32 0.00 0.00 4.17
372 382 4.217550 CACGTATCAGAATTGGTTTTGGGT 59.782 41.667 0.00 0.00 0.00 4.51
476 505 0.547471 TCTTCCCCATGTCTGGCAGA 60.547 55.000 14.43 14.43 41.64 4.26
581 612 8.356657 TGATTTTCATACAAACTGGACGAAAAT 58.643 29.630 5.57 5.57 41.67 1.82
610 649 3.915437 GGGTGAATTATATGCAACCCG 57.085 47.619 3.29 0.00 33.25 5.28
669 708 2.440980 GGGAGCTGGCCATCCAAC 60.441 66.667 23.85 6.78 42.91 3.77
692 731 5.507077 TGAAAAAGAAAAGATCCGTCAACG 58.493 37.500 0.00 0.00 39.44 4.10
693 732 6.363357 CCATGAAAAAGAAAAGATCCGTCAAC 59.637 38.462 0.00 0.00 0.00 3.18
694 733 6.264292 TCCATGAAAAAGAAAAGATCCGTCAA 59.736 34.615 0.00 0.00 0.00 3.18
695 734 5.767665 TCCATGAAAAAGAAAAGATCCGTCA 59.232 36.000 0.00 0.00 0.00 4.35
699 738 5.183140 TCCGTCCATGAAAAAGAAAAGATCC 59.817 40.000 0.00 0.00 0.00 3.36
700 739 6.254281 TCCGTCCATGAAAAAGAAAAGATC 57.746 37.500 0.00 0.00 0.00 2.75
706 745 3.153130 TGCATCCGTCCATGAAAAAGAA 58.847 40.909 0.00 0.00 0.00 2.52
707 746 2.749076 CTGCATCCGTCCATGAAAAAGA 59.251 45.455 0.00 0.00 0.00 2.52
716 755 2.559698 TTTTCTTCTGCATCCGTCCA 57.440 45.000 0.00 0.00 0.00 4.02
722 761 4.387862 CACCTGCAAATTTTCTTCTGCATC 59.612 41.667 0.96 0.00 43.42 3.91
732 771 3.071312 TCCAATGCTCACCTGCAAATTTT 59.929 39.130 0.00 0.00 46.61 1.82
823 862 3.275832 GATCTCCTAGGAGCGCGGC 62.276 68.421 30.99 15.09 41.71 6.53
824 863 1.175983 AAGATCTCCTAGGAGCGCGG 61.176 60.000 30.99 11.11 41.71 6.46
825 864 0.671251 AAAGATCTCCTAGGAGCGCG 59.329 55.000 30.99 11.50 41.71 6.86
826 865 1.270041 CCAAAGATCTCCTAGGAGCGC 60.270 57.143 30.99 23.77 41.71 5.92
827 866 2.035321 GTCCAAAGATCTCCTAGGAGCG 59.965 54.545 30.99 12.62 41.71 5.03
828 867 2.367241 GGTCCAAAGATCTCCTAGGAGC 59.633 54.545 30.99 19.24 41.71 4.70
829 868 3.922375 AGGTCCAAAGATCTCCTAGGAG 58.078 50.000 30.15 30.15 43.21 3.69
830 869 4.033709 CAAGGTCCAAAGATCTCCTAGGA 58.966 47.826 11.98 11.98 29.72 2.94
831 870 3.432890 GCAAGGTCCAAAGATCTCCTAGG 60.433 52.174 0.82 0.82 29.72 3.02
832 871 3.198635 TGCAAGGTCCAAAGATCTCCTAG 59.801 47.826 0.00 0.00 29.72 3.02
833 872 3.181329 TGCAAGGTCCAAAGATCTCCTA 58.819 45.455 0.00 0.00 29.72 2.94
834 873 1.988107 TGCAAGGTCCAAAGATCTCCT 59.012 47.619 0.00 0.00 29.72 3.69
835 874 2.290577 ACTGCAAGGTCCAAAGATCTCC 60.291 50.000 0.00 0.00 39.30 3.71
836 875 3.064900 ACTGCAAGGTCCAAAGATCTC 57.935 47.619 0.00 0.00 39.30 2.75
837 876 3.152341 CAACTGCAAGGTCCAAAGATCT 58.848 45.455 0.00 0.00 39.30 2.75
838 877 2.229784 CCAACTGCAAGGTCCAAAGATC 59.770 50.000 0.00 0.00 39.30 2.75
839 878 2.242043 CCAACTGCAAGGTCCAAAGAT 58.758 47.619 0.00 0.00 39.30 2.40
840 879 1.691196 CCAACTGCAAGGTCCAAAGA 58.309 50.000 0.00 0.00 39.30 2.52
841 880 0.675633 CCCAACTGCAAGGTCCAAAG 59.324 55.000 0.00 0.00 39.30 2.77
842 881 1.398958 GCCCAACTGCAAGGTCCAAA 61.399 55.000 0.00 0.00 39.30 3.28
1095 1135 4.346129 CACCGAATTAGCAGCTCAAAATC 58.654 43.478 0.00 0.00 0.00 2.17
1377 1608 3.110031 AGCACCCCAACCCAACCT 61.110 61.111 0.00 0.00 0.00 3.50
1385 1616 2.425592 CTCGACACAGCACCCCAA 59.574 61.111 0.00 0.00 0.00 4.12
1401 1632 1.051812 CCCAATCGTCCTATGCTCCT 58.948 55.000 0.00 0.00 0.00 3.69
1403 1634 1.871080 CACCCAATCGTCCTATGCTC 58.129 55.000 0.00 0.00 0.00 4.26
1456 1687 1.441729 CACATCTATGACCGGGCGT 59.558 57.895 7.48 7.48 0.00 5.68
1459 1690 3.492102 AAATCCACATCTATGACCGGG 57.508 47.619 6.32 0.00 0.00 5.73
1481 1712 3.058016 CCAGTTGCCACAATGAACACTAG 60.058 47.826 0.00 0.00 0.00 2.57
1485 1716 0.388659 GCCAGTTGCCACAATGAACA 59.611 50.000 0.00 0.00 0.00 3.18
1502 1733 0.108089 AAAACAAACCACCGGTTGCC 60.108 50.000 2.97 0.00 46.20 4.52
1503 1734 1.003108 CAAAACAAACCACCGGTTGC 58.997 50.000 2.97 0.00 46.20 4.17
1504 1735 2.656560 TCAAAACAAACCACCGGTTG 57.343 45.000 2.97 3.38 46.20 3.77
1506 1737 2.172679 ACTTCAAAACAAACCACCGGT 58.827 42.857 0.00 0.00 37.65 5.28
1507 1738 2.951457 ACTTCAAAACAAACCACCGG 57.049 45.000 0.00 0.00 0.00 5.28
1508 1739 3.369451 CCAAACTTCAAAACAAACCACCG 59.631 43.478 0.00 0.00 0.00 4.94
1509 1740 4.570930 TCCAAACTTCAAAACAAACCACC 58.429 39.130 0.00 0.00 0.00 4.61
1672 1913 5.722263 TCCATTCGGTAAAAACAGATCGTA 58.278 37.500 0.00 0.00 0.00 3.43
1676 1917 8.980481 ATATTCTCCATTCGGTAAAAACAGAT 57.020 30.769 0.00 0.00 0.00 2.90
1678 1930 8.438676 AGATATTCTCCATTCGGTAAAAACAG 57.561 34.615 0.00 0.00 0.00 3.16
2023 2285 0.539438 TGTTGTTAGGGGCAAGCCTG 60.539 55.000 11.40 0.00 36.10 4.85
2289 2556 8.541899 AAGGTACAGTTAAGGAAATGGAAAAA 57.458 30.769 0.00 0.00 34.92 1.94
2290 2557 8.417884 CAAAGGTACAGTTAAGGAAATGGAAAA 58.582 33.333 0.00 0.00 34.92 2.29
2291 2558 7.562088 ACAAAGGTACAGTTAAGGAAATGGAAA 59.438 33.333 0.00 0.00 34.92 3.13
2320 2590 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
2321 2591 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2322 2592 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2323 2593 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2324 2594 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
2325 2595 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2326 2596 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
2327 2597 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
2328 2598 3.495377 CACGACAAGTAATTTGGAACGGA 59.505 43.478 0.00 0.00 41.25 4.69
2329 2599 3.364565 CCACGACAAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 41.25 4.44
2330 2600 3.249080 ACCACGACAAGTAATTTGGAACG 59.751 43.478 0.00 0.00 41.25 3.95
2331 2601 4.823790 ACCACGACAAGTAATTTGGAAC 57.176 40.909 0.00 0.00 41.25 3.62
2332 2602 5.838531 AAACCACGACAAGTAATTTGGAA 57.161 34.783 0.00 0.00 41.25 3.53
2333 2603 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
2334 2604 6.731164 ACTAAAACCACGACAAGTAATTTGG 58.269 36.000 0.00 0.00 41.25 3.28
2335 2605 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
2336 2606 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
2337 2607 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
2338 2608 7.556733 TTGAACTAAAACCACGACAAGTAAT 57.443 32.000 0.00 0.00 0.00 1.89
2339 2609 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
2340 2610 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
2341 2611 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
2342 2612 7.486551 TCAAATTTGAACTAAAACCACGACAAG 59.513 33.333 18.45 0.00 33.55 3.16
2343 2613 7.313646 TCAAATTTGAACTAAAACCACGACAA 58.686 30.769 18.45 0.00 33.55 3.18
2344 2614 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
2345 2615 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2358 2628 8.191446 TCGTCATGGTTTTAGTTCAAATTTGAA 58.809 29.630 26.01 26.01 44.31 2.69
2359 2629 7.708051 TCGTCATGGTTTTAGTTCAAATTTGA 58.292 30.769 16.91 16.91 34.92 2.69
2360 2630 7.647715 ACTCGTCATGGTTTTAGTTCAAATTTG 59.352 33.333 12.15 12.15 0.00 2.32
2361 2631 7.712797 ACTCGTCATGGTTTTAGTTCAAATTT 58.287 30.769 0.00 0.00 0.00 1.82
2362 2632 7.272037 ACTCGTCATGGTTTTAGTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
2363 2633 6.877611 ACTCGTCATGGTTTTAGTTCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
2364 2634 7.789273 TTACTCGTCATGGTTTTAGTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
2365 2635 7.972832 ATTACTCGTCATGGTTTTAGTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
2366 2636 7.972832 AATTACTCGTCATGGTTTTAGTTCA 57.027 32.000 0.00 0.00 0.00 3.18
2367 2637 7.749126 CCAAATTACTCGTCATGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
2368 2638 7.446013 TCCAAATTACTCGTCATGGTTTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
2369 2639 6.938030 TCCAAATTACTCGTCATGGTTTTAGT 59.062 34.615 0.00 0.00 0.00 2.24
2370 2640 7.372451 TCCAAATTACTCGTCATGGTTTTAG 57.628 36.000 0.00 0.00 0.00 1.85
2371 2641 7.571613 CGTTCCAAATTACTCGTCATGGTTTTA 60.572 37.037 0.00 0.00 0.00 1.52
2372 2642 6.443792 GTTCCAAATTACTCGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
2373 2643 5.334569 CGTTCCAAATTACTCGTCATGGTTT 60.335 40.000 0.00 0.00 0.00 3.27
2374 2644 4.153475 CGTTCCAAATTACTCGTCATGGTT 59.847 41.667 0.00 0.00 0.00 3.67
2375 2645 3.682858 CGTTCCAAATTACTCGTCATGGT 59.317 43.478 0.00 0.00 0.00 3.55
2376 2646 3.063452 CCGTTCCAAATTACTCGTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
2377 2647 3.930229 TCCGTTCCAAATTACTCGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
2378 2648 4.181578 CTCCGTTCCAAATTACTCGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2379 2649 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
2380 2650 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2381 2651 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2382 2652 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2383 2653 3.622166 TCCCTCCGTTCCAAATTACTC 57.378 47.619 0.00 0.00 0.00 2.59
2384 2654 4.586306 ATTCCCTCCGTTCCAAATTACT 57.414 40.909 0.00 0.00 0.00 2.24
2385 2655 5.434408 ACTATTCCCTCCGTTCCAAATTAC 58.566 41.667 0.00 0.00 0.00 1.89
2386 2656 5.703730 ACTATTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2387 2657 4.586306 ACTATTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2388 2658 4.263771 ACAACTATTCCCTCCGTTCCAAAT 60.264 41.667 0.00 0.00 0.00 2.32
2389 2659 3.073356 ACAACTATTCCCTCCGTTCCAAA 59.927 43.478 0.00 0.00 0.00 3.28
2390 2660 2.640826 ACAACTATTCCCTCCGTTCCAA 59.359 45.455 0.00 0.00 0.00 3.53
2391 2661 2.027561 CACAACTATTCCCTCCGTTCCA 60.028 50.000 0.00 0.00 0.00 3.53
2392 2662 2.027469 ACACAACTATTCCCTCCGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
2393 2663 3.329929 ACACAACTATTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
2394 2664 4.468510 TCATACACAACTATTCCCTCCGTT 59.531 41.667 0.00 0.00 0.00 4.44
2395 2665 4.028131 TCATACACAACTATTCCCTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
2396 2666 4.665833 TCATACACAACTATTCCCTCCG 57.334 45.455 0.00 0.00 0.00 4.63
2397 2667 8.140112 AGATATCATACACAACTATTCCCTCC 57.860 38.462 5.32 0.00 0.00 4.30
2398 2668 9.030452 AGAGATATCATACACAACTATTCCCTC 57.970 37.037 5.32 0.00 0.00 4.30
2399 2669 8.964533 AGAGATATCATACACAACTATTCCCT 57.035 34.615 5.32 0.00 0.00 4.20
2549 4254 6.538742 ACCAGCAATATATACGCCAATATGTC 59.461 38.462 3.95 0.00 0.00 3.06
2815 4874 3.601443 AGTGAGTGATTCAGTAGCACC 57.399 47.619 8.83 0.00 37.70 5.01
2829 4888 9.520515 AACATATCATAAACTGGAAAAGTGAGT 57.479 29.630 0.00 0.00 39.81 3.41
3580 6612 6.656270 TCTGTAAGTAGATTCGGACACAGTTA 59.344 38.462 0.00 0.00 34.99 2.24
3830 6875 5.873179 TTTCAAATCGGTACTTGTCATCC 57.127 39.130 0.00 0.00 0.00 3.51
3951 7005 9.471702 CATTGCTATTGAGATAATAAGGGGAAT 57.528 33.333 0.00 0.00 0.00 3.01
4005 7059 5.357089 CATTGCAGAAAAACGTCAAATTCG 58.643 37.500 0.00 0.00 0.00 3.34
4339 7434 1.973812 GGGCAGTCTGTTTGCTCCC 60.974 63.158 0.93 0.00 41.27 4.30
4530 7697 6.055588 AGCATACAGTACACCCATAAATCAC 58.944 40.000 0.00 0.00 0.00 3.06
4541 7716 2.933495 TGACCGAGCATACAGTACAC 57.067 50.000 0.00 0.00 0.00 2.90
4610 7785 7.869937 AGATCCATCTTGTAAGTATCATTGACG 59.130 37.037 0.00 0.00 31.97 4.35
4718 7927 3.208747 ACACGGAGTTCTTCAAACCAT 57.791 42.857 0.00 0.00 41.61 3.55
4758 7967 6.006449 CCGATGGGAAAAATATCAGAGGAAT 58.994 40.000 0.00 0.00 34.06 3.01
4793 8002 9.181061 TCGATCGGTTAATATGAGGACATAATA 57.819 33.333 16.41 0.00 41.46 0.98
4833 8042 8.772250 TCCATTGAGATATTCTTAACCTGAGTT 58.228 33.333 0.00 0.00 40.15 3.01
4981 8190 2.040679 AGGCGGTGTAAGGTGGTTAAAT 59.959 45.455 0.00 0.00 0.00 1.40
5026 8238 0.462759 CCTCCGAAGATGTTCAGGGC 60.463 60.000 3.24 0.00 32.36 5.19
5042 8254 0.757188 TTCCCTGGATCTCTCGCCTC 60.757 60.000 0.00 0.00 0.00 4.70
5064 8276 1.559831 GGCGCCTAACAATTTGATGC 58.440 50.000 22.15 0.00 0.00 3.91
5126 8364 8.969260 TTTGTATGATACAGAAATCAGATGCT 57.031 30.769 5.34 0.00 39.18 3.79
5190 8428 5.394663 GCTGGAGATGCTCTAAGAACAAGTA 60.395 44.000 0.00 0.00 0.00 2.24
5223 8461 2.904178 ATTTTTAGCGCCTCCCGGGG 62.904 60.000 23.50 6.77 45.54 5.73
5224 8462 1.444917 GATTTTTAGCGCCTCCCGGG 61.445 60.000 16.85 16.85 37.44 5.73
5225 8463 1.772063 CGATTTTTAGCGCCTCCCGG 61.772 60.000 2.29 0.00 37.44 5.73
5226 8464 1.641677 CGATTTTTAGCGCCTCCCG 59.358 57.895 2.29 0.00 40.75 5.14
5227 8465 1.355563 GCGATTTTTAGCGCCTCCC 59.644 57.895 2.29 0.00 46.93 4.30
5228 8466 4.998294 GCGATTTTTAGCGCCTCC 57.002 55.556 2.29 0.00 46.93 4.30
5233 8471 0.100503 CCAAGGGGCGATTTTTAGCG 59.899 55.000 0.00 0.00 0.00 4.26
5234 8472 0.459899 CCCAAGGGGCGATTTTTAGC 59.540 55.000 0.00 0.00 35.35 3.09
5262 8500 1.514014 CAACATGCGGTTTAGCGCC 60.514 57.895 21.57 6.38 37.72 6.53
5263 8501 1.514014 CCAACATGCGGTTTAGCGC 60.514 57.895 18.31 18.31 37.72 5.92
5264 8502 1.136565 CCCAACATGCGGTTTAGCG 59.863 57.895 0.00 0.00 37.72 4.26
5265 8503 1.510844 CCCCAACATGCGGTTTAGC 59.489 57.895 0.00 0.00 37.72 3.09
5266 8504 1.944234 GCCCCCAACATGCGGTTTAG 61.944 60.000 0.00 0.00 37.72 1.85
5267 8505 1.979693 GCCCCCAACATGCGGTTTA 60.980 57.895 0.00 0.00 37.72 2.01
5268 8506 3.310307 GCCCCCAACATGCGGTTT 61.310 61.111 0.00 0.00 37.72 3.27
5273 8511 2.755469 ATCACGCCCCCAACATGC 60.755 61.111 0.00 0.00 0.00 4.06
5274 8512 3.067480 GCATCACGCCCCCAACATG 62.067 63.158 0.00 0.00 32.94 3.21
5275 8513 2.755469 GCATCACGCCCCCAACAT 60.755 61.111 0.00 0.00 32.94 2.71
5284 8522 2.512515 GACTGAGGGGCATCACGC 60.513 66.667 0.00 0.00 41.28 5.34
5285 8523 2.202797 CGACTGAGGGGCATCACG 60.203 66.667 0.00 0.00 0.00 4.35
5286 8524 1.448540 CACGACTGAGGGGCATCAC 60.449 63.158 0.00 0.00 0.00 3.06
5287 8525 2.659063 CCACGACTGAGGGGCATCA 61.659 63.158 0.00 0.00 0.00 3.07
5288 8526 2.187946 CCACGACTGAGGGGCATC 59.812 66.667 0.00 0.00 0.00 3.91
5289 8527 4.101448 GCCACGACTGAGGGGCAT 62.101 66.667 14.28 0.00 45.70 4.40
5295 8533 4.457496 ATGGGCGCCACGACTGAG 62.457 66.667 30.85 0.00 35.80 3.35
5296 8534 4.758251 CATGGGCGCCACGACTGA 62.758 66.667 30.85 2.23 35.80 3.41
5297 8535 2.923426 ATACATGGGCGCCACGACTG 62.923 60.000 30.85 18.69 35.80 3.51
5298 8536 2.252072 AATACATGGGCGCCACGACT 62.252 55.000 30.85 8.49 35.80 4.18
5299 8537 1.373590 AAATACATGGGCGCCACGAC 61.374 55.000 30.85 11.60 35.80 4.34
5300 8538 0.678366 AAAATACATGGGCGCCACGA 60.678 50.000 30.85 12.11 35.80 4.35
5301 8539 0.172352 AAAAATACATGGGCGCCACG 59.828 50.000 30.85 18.13 35.80 4.94
5302 8540 1.203523 TCAAAAATACATGGGCGCCAC 59.796 47.619 30.85 18.39 35.80 5.01
5303 8541 1.550327 TCAAAAATACATGGGCGCCA 58.450 45.000 30.85 15.30 38.19 5.69
5304 8542 2.663826 TTCAAAAATACATGGGCGCC 57.336 45.000 21.18 21.18 0.00 6.53
5305 8543 5.544136 AATTTTCAAAAATACATGGGCGC 57.456 34.783 0.00 0.00 37.62 6.53
5318 8556 9.704098 GTTTGTGCCGTAATTTAAATTTTCAAA 57.296 25.926 18.14 15.27 0.00 2.69
5319 8557 8.879759 TGTTTGTGCCGTAATTTAAATTTTCAA 58.120 25.926 18.14 11.38 0.00 2.69
5320 8558 8.420374 TGTTTGTGCCGTAATTTAAATTTTCA 57.580 26.923 18.14 8.77 0.00 2.69
5321 8559 9.312146 CATGTTTGTGCCGTAATTTAAATTTTC 57.688 29.630 18.14 11.04 0.00 2.29
5322 8560 8.286097 CCATGTTTGTGCCGTAATTTAAATTTT 58.714 29.630 18.14 0.00 0.00 1.82
5323 8561 7.572168 GCCATGTTTGTGCCGTAATTTAAATTT 60.572 33.333 18.14 0.00 0.00 1.82
5324 8562 6.128418 GCCATGTTTGTGCCGTAATTTAAATT 60.128 34.615 17.18 17.18 0.00 1.82
5325 8563 5.350091 GCCATGTTTGTGCCGTAATTTAAAT 59.650 36.000 0.00 0.00 0.00 1.40
5326 8564 4.686554 GCCATGTTTGTGCCGTAATTTAAA 59.313 37.500 0.00 0.00 0.00 1.52
5327 8565 4.238514 GCCATGTTTGTGCCGTAATTTAA 58.761 39.130 0.00 0.00 0.00 1.52
5328 8566 3.255888 TGCCATGTTTGTGCCGTAATTTA 59.744 39.130 0.00 0.00 0.00 1.40
5329 8567 2.036475 TGCCATGTTTGTGCCGTAATTT 59.964 40.909 0.00 0.00 0.00 1.82
5330 8568 1.615883 TGCCATGTTTGTGCCGTAATT 59.384 42.857 0.00 0.00 0.00 1.40
5331 8569 1.067915 GTGCCATGTTTGTGCCGTAAT 60.068 47.619 0.00 0.00 0.00 1.89
5332 8570 0.312416 GTGCCATGTTTGTGCCGTAA 59.688 50.000 0.00 0.00 0.00 3.18
5333 8571 0.819666 TGTGCCATGTTTGTGCCGTA 60.820 50.000 0.00 0.00 0.00 4.02
5334 8572 1.670949 TTGTGCCATGTTTGTGCCGT 61.671 50.000 0.00 0.00 0.00 5.68
5335 8573 0.529337 TTTGTGCCATGTTTGTGCCG 60.529 50.000 0.00 0.00 0.00 5.69
5336 8574 1.881591 ATTTGTGCCATGTTTGTGCC 58.118 45.000 0.00 0.00 0.00 5.01
5337 8575 2.871022 TGAATTTGTGCCATGTTTGTGC 59.129 40.909 0.00 0.00 0.00 4.57
5338 8576 4.260702 GGTTGAATTTGTGCCATGTTTGTG 60.261 41.667 0.00 0.00 0.00 3.33
5339 8577 3.876320 GGTTGAATTTGTGCCATGTTTGT 59.124 39.130 0.00 0.00 0.00 2.83
5340 8578 3.875727 TGGTTGAATTTGTGCCATGTTTG 59.124 39.130 0.00 0.00 0.00 2.93
5341 8579 4.148128 TGGTTGAATTTGTGCCATGTTT 57.852 36.364 0.00 0.00 0.00 2.83
5342 8580 3.834489 TGGTTGAATTTGTGCCATGTT 57.166 38.095 0.00 0.00 0.00 2.71
5343 8581 3.834489 TTGGTTGAATTTGTGCCATGT 57.166 38.095 0.00 0.00 0.00 3.21
5344 8582 4.128643 AGTTTGGTTGAATTTGTGCCATG 58.871 39.130 0.00 0.00 0.00 3.66
5345 8583 4.420522 AGTTTGGTTGAATTTGTGCCAT 57.579 36.364 0.00 0.00 0.00 4.40
5346 8584 3.902881 AGTTTGGTTGAATTTGTGCCA 57.097 38.095 0.00 0.00 0.00 4.92
5347 8585 4.201901 CCAAAGTTTGGTTGAATTTGTGCC 60.202 41.667 24.17 0.00 45.93 5.01
5348 8586 4.907579 CCAAAGTTTGGTTGAATTTGTGC 58.092 39.130 24.17 0.00 45.93 4.57
5361 8599 0.307760 AACGAGCTCGCCAAAGTTTG 59.692 50.000 34.83 8.73 44.43 2.93
5362 8600 0.586802 GAACGAGCTCGCCAAAGTTT 59.413 50.000 34.83 19.90 44.43 2.66
5363 8601 0.531974 TGAACGAGCTCGCCAAAGTT 60.532 50.000 34.83 20.65 44.43 2.66
5364 8602 0.320771 ATGAACGAGCTCGCCAAAGT 60.321 50.000 34.83 15.49 44.43 2.66
5365 8603 1.640428 TATGAACGAGCTCGCCAAAG 58.360 50.000 34.83 9.33 44.43 2.77
5366 8604 2.309528 ATATGAACGAGCTCGCCAAA 57.690 45.000 34.83 18.76 44.43 3.28
5367 8605 2.309528 AATATGAACGAGCTCGCCAA 57.690 45.000 34.83 20.59 44.43 4.52
5368 8606 2.309528 AAATATGAACGAGCTCGCCA 57.690 45.000 34.83 30.18 44.43 5.69
5369 8607 4.789095 TTTAAATATGAACGAGCTCGCC 57.211 40.909 34.83 25.87 44.43 5.54
5370 8608 8.934973 ATATTTTTAAATATGAACGAGCTCGC 57.065 30.769 34.83 20.44 40.05 5.03
5403 8641 2.992593 GGAGCAGCCTAGTAGCTTTTT 58.007 47.619 0.00 0.00 42.61 1.94
5404 8642 2.700722 GGAGCAGCCTAGTAGCTTTT 57.299 50.000 0.00 0.00 42.61 2.27
5416 8654 3.909086 AAGGGCAACGAGGAGCAGC 62.909 63.158 0.00 0.00 37.60 5.25
5417 8655 2.037136 CAAGGGCAACGAGGAGCAG 61.037 63.158 0.00 0.00 37.60 4.24
5418 8656 2.032528 CAAGGGCAACGAGGAGCA 59.967 61.111 0.00 0.00 37.60 4.26
5419 8657 3.435186 GCAAGGGCAACGAGGAGC 61.435 66.667 0.00 0.00 40.72 4.70
5448 8686 1.030488 CGGTTCTACAGCCTCCTCGA 61.030 60.000 0.00 0.00 0.00 4.04
5698 9674 1.524621 CTCCAGTTAGCATGGCCGG 60.525 63.158 0.00 0.00 37.76 6.13
5763 9739 1.007271 ACGCACAGTCTCTTCACCG 60.007 57.895 0.00 0.00 0.00 4.94
5768 9744 3.274393 GTGACACGCACAGTCTCTT 57.726 52.632 0.00 0.00 46.91 2.85
5863 9858 4.293415 CAGTGAATACCGTACGGAATACC 58.707 47.826 39.52 22.44 38.96 2.73
5864 9859 3.732721 GCAGTGAATACCGTACGGAATAC 59.267 47.826 39.52 26.25 38.96 1.89
5865 9860 3.548616 CGCAGTGAATACCGTACGGAATA 60.549 47.826 39.52 22.98 38.96 1.75
5866 9861 2.797087 CGCAGTGAATACCGTACGGAAT 60.797 50.000 39.52 23.84 38.96 3.01
5867 9862 1.467883 CGCAGTGAATACCGTACGGAA 60.468 52.381 39.52 16.47 38.96 4.30
5868 9863 0.099259 CGCAGTGAATACCGTACGGA 59.901 55.000 39.52 23.13 38.96 4.69
5869 9864 1.477030 GCGCAGTGAATACCGTACGG 61.477 60.000 32.22 32.22 42.03 4.02
5870 9865 0.524816 AGCGCAGTGAATACCGTACG 60.525 55.000 11.47 8.69 0.00 3.67
5871 9866 0.921347 CAGCGCAGTGAATACCGTAC 59.079 55.000 11.47 0.00 0.00 3.67
5872 9867 0.804544 GCAGCGCAGTGAATACCGTA 60.805 55.000 11.47 0.00 0.00 4.02
5873 9868 2.100631 GCAGCGCAGTGAATACCGT 61.101 57.895 11.47 0.00 0.00 4.83
5878 9873 4.704833 ACGGGCAGCGCAGTGAAT 62.705 61.111 11.47 0.00 0.00 2.57
5928 9923 4.855715 TCGTGGTGAATTAATGCCAAAA 57.144 36.364 7.86 0.00 32.26 2.44
5929 9924 4.855715 TTCGTGGTGAATTAATGCCAAA 57.144 36.364 7.86 0.00 32.26 3.28
5930 9925 4.855715 TTTCGTGGTGAATTAATGCCAA 57.144 36.364 7.86 0.00 36.22 4.52
5931 9926 4.855715 TTTTCGTGGTGAATTAATGCCA 57.144 36.364 0.00 0.00 36.22 4.92
5932 9927 4.089351 CGTTTTTCGTGGTGAATTAATGCC 59.911 41.667 0.00 0.00 36.22 4.40
5933 9928 4.912766 TCGTTTTTCGTGGTGAATTAATGC 59.087 37.500 0.00 0.00 40.80 3.56
5934 9929 5.567534 CCTCGTTTTTCGTGGTGAATTAATG 59.432 40.000 0.00 0.00 44.86 1.90
5935 9930 5.695818 CCTCGTTTTTCGTGGTGAATTAAT 58.304 37.500 0.00 0.00 44.86 1.40
5936 9931 5.098218 CCTCGTTTTTCGTGGTGAATTAA 57.902 39.130 0.00 0.00 44.86 1.40
5937 9932 4.735662 CCTCGTTTTTCGTGGTGAATTA 57.264 40.909 0.00 0.00 44.86 1.40
5938 9933 3.619233 CCTCGTTTTTCGTGGTGAATT 57.381 42.857 0.00 0.00 44.86 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.