Multiple sequence alignment - TraesCS6B01G381800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G381800 chr6B 100.000 4490 0 0 1 4490 656527438 656522949 0.000000e+00 8292
1 TraesCS6B01G381800 chr6B 91.089 505 45 0 3 507 89170372 89170876 0.000000e+00 684
2 TraesCS6B01G381800 chr6B 100.000 224 0 0 4806 5029 656522633 656522410 1.010000e-111 414
3 TraesCS6B01G381800 chr6D 94.595 3996 193 14 507 4490 434144082 434140098 0.000000e+00 6161
4 TraesCS6B01G381800 chr6D 89.697 165 9 5 4862 5018 434139960 434139796 2.370000e-48 204
5 TraesCS6B01G381800 chr6A 95.790 3729 136 11 580 4289 580302570 580298844 0.000000e+00 5997
6 TraesCS6B01G381800 chr1A 87.302 504 64 0 7 510 579796598 579796095 1.210000e-160 577
7 TraesCS6B01G381800 chr1A 86.193 507 70 0 4 510 97948172 97947666 2.650000e-152 549
8 TraesCS6B01G381800 chr1A 84.418 507 77 1 4 510 563263314 563262810 9.720000e-137 497
9 TraesCS6B01G381800 chr4A 90.361 332 32 0 1 332 622579356 622579025 2.150000e-118 436
10 TraesCS6B01G381800 chr4A 89.247 93 10 0 350 442 622565516 622565424 3.180000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G381800 chr6B 656522410 656527438 5028 True 4353.0 8292 100.000 1 5029 2 chr6B.!!$R1 5028
1 TraesCS6B01G381800 chr6B 89170372 89170876 504 False 684.0 684 91.089 3 507 1 chr6B.!!$F1 504
2 TraesCS6B01G381800 chr6D 434139796 434144082 4286 True 3182.5 6161 92.146 507 5018 2 chr6D.!!$R1 4511
3 TraesCS6B01G381800 chr6A 580298844 580302570 3726 True 5997.0 5997 95.790 580 4289 1 chr6A.!!$R1 3709
4 TraesCS6B01G381800 chr1A 579796095 579796598 503 True 577.0 577 87.302 7 510 1 chr1A.!!$R3 503
5 TraesCS6B01G381800 chr1A 97947666 97948172 506 True 549.0 549 86.193 4 510 1 chr1A.!!$R1 506
6 TraesCS6B01G381800 chr1A 563262810 563263314 504 True 497.0 497 84.418 4 510 1 chr1A.!!$R2 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 465 0.753262 GAAAGCCTCGAGCCTCCATA 59.247 55.000 6.99 0.0 45.47 2.74 F
974 992 2.027625 CCGAGCAAAGACCGACCAC 61.028 63.158 0.00 0.0 0.00 4.16 F
1959 1982 0.173708 GGCTCGTCGAGGAAAGATGT 59.826 55.000 23.09 0.0 0.00 3.06 F
3026 3050 0.625849 GGAAGAGGAGGATGGCCAAA 59.374 55.000 10.96 0.0 36.29 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1604 2.046507 ACGTAGACGCCGGAGTCT 60.047 61.111 37.46 37.46 43.15 3.24 R
2820 2844 2.125147 CGTGTCCCATGCCGATGT 60.125 61.111 0.00 0.00 0.00 3.06 R
3752 3776 1.377202 GTCCATGTGCACGGACCAT 60.377 57.895 25.37 6.77 45.03 3.55 R
4868 4896 0.259938 GAAGGGGGTGCAGAATGGAT 59.740 55.000 0.00 0.00 39.99 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.657824 CGCCCGAACGACCACACT 62.658 66.667 0.00 0.00 34.06 3.55
83 84 5.363580 ACTTTGGGTTTCTTGATCAACATGT 59.636 36.000 3.38 0.00 0.00 3.21
88 89 5.584649 GGGTTTCTTGATCAACATGTATCGA 59.415 40.000 3.38 0.00 0.00 3.59
121 122 0.825425 TTGGCAAGGTTGATCCGCAA 60.825 50.000 0.00 0.00 41.99 4.85
325 326 1.407258 CAGGAAGAGGTAAGGCGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
338 339 2.680352 GAGAGCGGGTCACCCTGA 60.680 66.667 12.38 0.00 42.67 3.86
377 378 2.348472 TCAAACCATCTCCCAGGAACT 58.652 47.619 0.00 0.00 43.88 3.01
464 465 0.753262 GAAAGCCTCGAGCCTCCATA 59.247 55.000 6.99 0.00 45.47 2.74
502 503 5.073144 TCTCCCAGTTAACTGAATCAAAGGT 59.927 40.000 32.50 0.00 46.59 3.50
510 511 7.229506 AGTTAACTGAATCAAAGGTCTTGAAGG 59.770 37.037 7.48 0.00 31.55 3.46
525 526 6.981559 GGTCTTGAAGGTATAGAATGTGAGAC 59.018 42.308 0.00 0.00 0.00 3.36
531 532 8.467598 TGAAGGTATAGAATGTGAGACTACAAC 58.532 37.037 0.00 0.00 33.69 3.32
534 535 8.812972 AGGTATAGAATGTGAGACTACAACAAA 58.187 33.333 0.00 0.00 33.69 2.83
535 536 8.870879 GGTATAGAATGTGAGACTACAACAAAC 58.129 37.037 0.00 0.00 33.69 2.93
547 548 3.312736 ACAACAAACTCCACTCCCAAT 57.687 42.857 0.00 0.00 0.00 3.16
553 554 6.156748 ACAAACTCCACTCCCAATTTTTAC 57.843 37.500 0.00 0.00 0.00 2.01
554 555 5.219633 CAAACTCCACTCCCAATTTTTACG 58.780 41.667 0.00 0.00 0.00 3.18
555 556 4.094830 ACTCCACTCCCAATTTTTACGT 57.905 40.909 0.00 0.00 0.00 3.57
557 558 5.243207 ACTCCACTCCCAATTTTTACGTAG 58.757 41.667 0.00 0.00 0.00 3.51
973 991 2.342279 CCGAGCAAAGACCGACCA 59.658 61.111 0.00 0.00 0.00 4.02
974 992 2.027625 CCGAGCAAAGACCGACCAC 61.028 63.158 0.00 0.00 0.00 4.16
976 994 2.027625 GAGCAAAGACCGACCACCG 61.028 63.158 0.00 0.00 38.18 4.94
977 995 2.029964 GCAAAGACCGACCACCGA 59.970 61.111 0.00 0.00 41.76 4.69
993 1016 4.570663 GACCGATCGAGCCCACCG 62.571 72.222 18.66 0.00 0.00 4.94
1959 1982 0.173708 GGCTCGTCGAGGAAAGATGT 59.826 55.000 23.09 0.00 0.00 3.06
2232 2256 1.214589 GCTCTCGCCGAGGTTGTAA 59.785 57.895 15.08 0.00 40.25 2.41
2505 2529 1.153549 GCTAGCACTCTCAACCCCG 60.154 63.158 10.63 0.00 0.00 5.73
2597 2621 4.697756 CAGGACAAGGCGCGGGAA 62.698 66.667 8.83 0.00 0.00 3.97
2855 2879 2.470286 GACGAAAAGGTGCTCGCG 59.530 61.111 0.00 0.00 38.64 5.87
3024 3048 1.694169 GGGAAGAGGAGGATGGCCA 60.694 63.158 8.56 8.56 36.29 5.36
3026 3050 0.625849 GGAAGAGGAGGATGGCCAAA 59.374 55.000 10.96 0.00 36.29 3.28
3050 3074 1.079127 CTCCGTGGCGATCTTTGGT 60.079 57.895 0.00 0.00 0.00 3.67
3197 3221 4.595538 TTCCGCGTCGTGGTGCTT 62.596 61.111 23.47 0.00 34.40 3.91
3491 3515 2.172505 TGACCTGAACTTGTCCATGTGT 59.827 45.455 0.00 0.00 0.00 3.72
3938 3962 2.279918 GGTGCAACGACGGTGAGT 60.280 61.111 18.96 0.00 38.12 3.41
4140 4164 4.556233 CATCGGAGATTAATTAGGCACGA 58.444 43.478 0.00 0.00 45.12 4.35
4143 4167 3.982058 CGGAGATTAATTAGGCACGAGAC 59.018 47.826 0.00 0.00 0.00 3.36
4213 4237 5.977129 GCGCCAAAATGCTAAACTTACATAT 59.023 36.000 0.00 0.00 0.00 1.78
4255 4282 6.616577 AGTTAGAAAAACATGGTTAAGGGGA 58.383 36.000 0.00 0.00 0.00 4.81
4256 4283 6.719829 AGTTAGAAAAACATGGTTAAGGGGAG 59.280 38.462 0.00 0.00 0.00 4.30
4279 4306 3.883489 AGTTTTCTCCCTCAACTTTTCGG 59.117 43.478 0.00 0.00 0.00 4.30
4293 4320 8.070034 TCAACTTTTCGGTATTAGGTAGATGA 57.930 34.615 0.00 0.00 0.00 2.92
4305 4332 2.769095 AGGTAGATGAAGAAGAGGTGGC 59.231 50.000 0.00 0.00 0.00 5.01
4325 4352 5.475564 GTGGCTTAAGTGAAAACATAGGGAA 59.524 40.000 4.02 0.00 0.00 3.97
4350 4377 0.323629 AGGAGCCCGTCGATTGAAAA 59.676 50.000 0.00 0.00 0.00 2.29
4351 4378 1.161843 GGAGCCCGTCGATTGAAAAA 58.838 50.000 0.00 0.00 0.00 1.94
4375 4402 5.823861 AAAATTGGGTCAGCCTATTTTGT 57.176 34.783 22.25 4.59 37.46 2.83
4380 4407 2.026262 GGGTCAGCCTATTTTGTGAGGA 60.026 50.000 0.00 0.00 34.46 3.71
4382 4409 3.879892 GGTCAGCCTATTTTGTGAGGATC 59.120 47.826 0.00 0.00 34.46 3.36
4440 4467 2.806818 GTCTTCTTCCTCCAACCGTTTC 59.193 50.000 0.00 0.00 0.00 2.78
4442 4469 1.430992 TCTTCCTCCAACCGTTTCCT 58.569 50.000 0.00 0.00 0.00 3.36
4445 4472 2.265589 TCCTCCAACCGTTTCCTTTC 57.734 50.000 0.00 0.00 0.00 2.62
4446 4473 1.772453 TCCTCCAACCGTTTCCTTTCT 59.228 47.619 0.00 0.00 0.00 2.52
4447 4474 2.974099 TCCTCCAACCGTTTCCTTTCTA 59.026 45.455 0.00 0.00 0.00 2.10
4448 4475 3.391955 TCCTCCAACCGTTTCCTTTCTAA 59.608 43.478 0.00 0.00 0.00 2.10
4449 4476 4.042435 TCCTCCAACCGTTTCCTTTCTAAT 59.958 41.667 0.00 0.00 0.00 1.73
4463 4491 8.842358 TTCCTTTCTAATAAACAGATCGTTGT 57.158 30.769 4.16 0.00 38.07 3.32
4481 4509 3.179443 TGTTGCTCGTGTTCTTCTTCT 57.821 42.857 0.00 0.00 0.00 2.85
4829 4857 2.187946 CTCTCCCCACCATCGTGC 59.812 66.667 0.00 0.00 38.79 5.34
4832 4860 4.408821 TCCCCACCATCGTGCTGC 62.409 66.667 0.00 0.00 38.79 5.25
4867 4895 2.286523 CCTCTCCGGTGAACCTGCT 61.287 63.158 7.75 0.00 0.00 4.24
4868 4896 0.970937 CCTCTCCGGTGAACCTGCTA 60.971 60.000 7.75 0.00 0.00 3.49
4869 4897 1.115467 CTCTCCGGTGAACCTGCTAT 58.885 55.000 7.75 0.00 0.00 2.97
4870 4898 1.067821 CTCTCCGGTGAACCTGCTATC 59.932 57.143 7.75 0.00 0.00 2.08
4872 4900 0.616395 TCCGGTGAACCTGCTATCCA 60.616 55.000 0.00 0.00 0.00 3.41
4897 4964 1.613520 GCACCCCCTTCACCTTAAGAC 60.614 57.143 3.36 0.00 0.00 3.01
4924 4991 1.426215 GGAGGTTGTTTGTTCCCCCTA 59.574 52.381 0.00 0.00 0.00 3.53
4962 5036 4.874977 GCCTCGGTGCTCTACGGC 62.875 72.222 0.00 0.00 0.00 5.68
4989 5063 6.545504 TTCTTTCTTCTCCAACAAATCGAG 57.454 37.500 0.00 0.00 0.00 4.04
4991 5065 6.755206 TCTTTCTTCTCCAACAAATCGAGTA 58.245 36.000 0.00 0.00 0.00 2.59
4999 5073 4.888239 TCCAACAAATCGAGTAACCCAAAA 59.112 37.500 0.00 0.00 0.00 2.44
5001 5075 5.861787 CCAACAAATCGAGTAACCCAAAATC 59.138 40.000 0.00 0.00 0.00 2.17
5026 5100 3.063526 AGGCGACTGACATGTGCT 58.936 55.556 1.15 0.00 41.13 4.40
5027 5101 1.079543 AGGCGACTGACATGTGCTC 60.080 57.895 1.15 0.00 41.13 4.26
5028 5102 1.079543 GGCGACTGACATGTGCTCT 60.080 57.895 1.15 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179145 CCGCAAACGTATCTCGGTCT 60.179 55.000 9.40 0.00 44.69 3.85
1 2 1.143969 CCCGCAAACGTATCTCGGTC 61.144 60.000 14.39 0.00 44.69 4.79
41 42 2.049248 GTGGTCGTTCGGGCGTTA 60.049 61.111 0.14 0.00 0.00 3.18
43 44 4.955774 GTGTGGTCGTTCGGGCGT 62.956 66.667 0.14 0.00 0.00 5.68
61 62 5.867903 ACATGTTGATCAAGAAACCCAAA 57.132 34.783 8.80 0.00 0.00 3.28
83 84 0.450583 AGAGCACGCTCGTTTCGATA 59.549 50.000 13.12 0.00 46.90 2.92
88 89 2.607892 GCCAAGAGCACGCTCGTTT 61.608 57.895 13.12 0.76 46.90 3.60
131 132 5.072736 TCAGATCCTGGATATGTTTGCTGAT 59.927 40.000 25.81 0.00 33.58 2.90
189 190 2.930040 CCGATGACACACTGGTTATCAC 59.070 50.000 0.00 0.00 34.46 3.06
338 339 2.224670 TGAAATAAAGTGTGGGCTCCGT 60.225 45.455 0.00 0.00 0.00 4.69
377 378 1.377202 GGCGGTCTTGCTGAATGGA 60.377 57.895 0.00 0.00 34.52 3.41
421 422 0.682292 TGCGTGGTGTGACTGGATTA 59.318 50.000 0.00 0.00 0.00 1.75
502 503 7.962995 AGTCTCACATTCTATACCTTCAAGA 57.037 36.000 0.00 0.00 0.00 3.02
510 511 9.640963 AGTTTGTTGTAGTCTCACATTCTATAC 57.359 33.333 0.00 0.00 0.00 1.47
525 526 3.485463 TGGGAGTGGAGTTTGTTGTAG 57.515 47.619 0.00 0.00 0.00 2.74
531 532 5.219633 CGTAAAAATTGGGAGTGGAGTTTG 58.780 41.667 0.00 0.00 0.00 2.93
534 535 4.094830 ACGTAAAAATTGGGAGTGGAGT 57.905 40.909 0.00 0.00 0.00 3.85
535 536 5.484715 TCTACGTAAAAATTGGGAGTGGAG 58.515 41.667 0.00 0.00 0.00 3.86
599 606 9.914131 GCTTTTCTTTGAATTCCTACAGTTTAT 57.086 29.630 2.27 0.00 0.00 1.40
600 607 8.908903 TGCTTTTCTTTGAATTCCTACAGTTTA 58.091 29.630 2.27 0.00 0.00 2.01
728 737 5.697633 AGATTGTTTAAGGTGCAAGCATTTG 59.302 36.000 0.00 0.00 36.26 2.32
809 818 1.239347 GAGGTGAAAGGTGAAGGTGC 58.761 55.000 0.00 0.00 0.00 5.01
963 981 3.677648 CGGTCGGTGGTCGGTCTT 61.678 66.667 0.00 0.00 39.77 3.01
976 994 4.570663 CGGTGGGCTCGATCGGTC 62.571 72.222 16.41 7.47 0.00 4.79
1278 1301 3.986006 TGGTGCTCCGTGGACGTC 61.986 66.667 7.13 7.13 37.93 4.34
1281 1304 3.936203 TGGTGGTGCTCCGTGGAC 61.936 66.667 0.00 0.00 36.30 4.02
1473 1496 4.570663 GGGTCGTCGAGGATGGCG 62.571 72.222 11.48 0.00 0.00 5.69
1581 1604 2.046507 ACGTAGACGCCGGAGTCT 60.047 61.111 37.46 37.46 43.15 3.24
1863 1886 2.502947 TGCCAGTAGCTCAGATGTGATT 59.497 45.455 0.00 0.00 44.23 2.57
1872 1895 4.082523 GCCGGTGCCAGTAGCTCA 62.083 66.667 1.90 0.00 44.23 4.26
2232 2256 8.783093 TCGTGACATAATCAAGAAAGATTTGTT 58.217 29.630 0.00 0.00 42.07 2.83
2439 2463 3.900892 CCGCTCGTAGCCGTCCAT 61.901 66.667 2.00 0.00 38.18 3.41
2468 2492 3.702555 GCATCGGCGTACGGCATC 61.703 66.667 36.23 19.93 46.16 3.91
2489 2513 2.656069 GGCGGGGTTGAGAGTGCTA 61.656 63.158 0.00 0.00 0.00 3.49
2493 2517 3.382832 CTCGGCGGGGTTGAGAGT 61.383 66.667 7.21 0.00 31.31 3.24
2495 2519 2.602267 TTCTCGGCGGGGTTGAGA 60.602 61.111 7.05 0.00 37.00 3.27
2505 2529 2.167861 GCGACATGGTCTTCTCGGC 61.168 63.158 0.00 0.00 0.00 5.54
2597 2621 2.125229 CGCCACAGCTCATCTGCT 60.125 61.111 0.00 0.00 46.76 4.24
2659 2683 3.358076 GAGCTCGTAACCGCTGGCT 62.358 63.158 0.00 0.00 36.45 4.75
2663 2687 2.749044 TCGGAGCTCGTAACCGCT 60.749 61.111 7.83 0.00 45.25 5.52
2820 2844 2.125147 CGTGTCCCATGCCGATGT 60.125 61.111 0.00 0.00 0.00 3.06
2855 2879 3.119096 GCCTCCGTGAGCCGTTTC 61.119 66.667 0.00 0.00 33.66 2.78
3197 3221 2.571757 GCGTGGTCGAGGTCATCA 59.428 61.111 0.00 0.00 39.71 3.07
3346 3370 4.778143 GCGAGCCGGTGGGTTGAT 62.778 66.667 1.90 0.00 36.76 2.57
3358 3382 2.825836 CCAGGTTCCATGGCGAGC 60.826 66.667 6.96 7.96 0.00 5.03
3431 3455 3.298115 TTTCACGCGCCGGTATCCA 62.298 57.895 5.73 0.00 0.00 3.41
3744 3768 2.747022 CACGGACCATCCACCACA 59.253 61.111 0.00 0.00 35.91 4.17
3752 3776 1.377202 GTCCATGTGCACGGACCAT 60.377 57.895 25.37 6.77 45.03 3.55
3917 3941 4.955774 ACCGTCGTTGCACCGTCC 62.956 66.667 2.82 0.00 0.00 4.79
3938 3962 2.281208 CCTTCCACGGCCGACAAA 60.281 61.111 35.90 20.15 0.00 2.83
4143 4167 7.910162 CCGGAAATGTGAACATACAATTTCTAG 59.090 37.037 0.00 0.00 35.10 2.43
4255 4282 4.816925 CGAAAAGTTGAGGGAGAAAACTCT 59.183 41.667 0.00 0.00 33.09 3.24
4256 4283 4.023963 CCGAAAAGTTGAGGGAGAAAACTC 60.024 45.833 0.00 0.00 33.09 3.01
4279 4306 7.662897 CCACCTCTTCTTCATCTACCTAATAC 58.337 42.308 0.00 0.00 0.00 1.89
4293 4320 4.706842 TTCACTTAAGCCACCTCTTCTT 57.293 40.909 1.29 0.00 0.00 2.52
4305 4332 6.378280 AGCCATTCCCTATGTTTTCACTTAAG 59.622 38.462 0.00 0.00 31.99 1.85
4352 4379 5.997129 CACAAAATAGGCTGACCCAATTTTT 59.003 36.000 0.00 0.00 38.80 1.94
4353 4380 5.306678 TCACAAAATAGGCTGACCCAATTTT 59.693 36.000 0.00 0.00 40.26 1.82
4354 4381 4.837860 TCACAAAATAGGCTGACCCAATTT 59.162 37.500 0.00 0.00 34.88 1.82
4355 4382 4.415596 TCACAAAATAGGCTGACCCAATT 58.584 39.130 0.00 0.00 36.11 2.32
4356 4383 4.019174 CTCACAAAATAGGCTGACCCAAT 58.981 43.478 0.00 0.00 36.11 3.16
4368 4395 6.885918 TGCTTCAGATTGATCCTCACAAAATA 59.114 34.615 0.00 0.00 0.00 1.40
4370 4397 5.072055 TGCTTCAGATTGATCCTCACAAAA 58.928 37.500 0.00 0.00 0.00 2.44
4374 4401 6.286758 TCTAATGCTTCAGATTGATCCTCAC 58.713 40.000 0.00 0.00 0.00 3.51
4375 4402 6.490241 TCTAATGCTTCAGATTGATCCTCA 57.510 37.500 0.00 0.00 0.00 3.86
4412 4439 1.139947 GAGGAAGAAGACGCGGGAG 59.860 63.158 12.47 0.00 0.00 4.30
4413 4440 2.348888 GGAGGAAGAAGACGCGGGA 61.349 63.158 12.47 0.00 0.00 5.14
4419 4446 2.545537 AACGGTTGGAGGAAGAAGAC 57.454 50.000 0.00 0.00 0.00 3.01
4440 4467 7.481798 GCAACAACGATCTGTTTATTAGAAAGG 59.518 37.037 0.00 0.00 39.29 3.11
4442 4469 8.094798 AGCAACAACGATCTGTTTATTAGAAA 57.905 30.769 0.00 0.00 39.29 2.52
4445 4472 6.178507 CGAGCAACAACGATCTGTTTATTAG 58.821 40.000 0.00 0.00 39.29 1.73
4446 4473 5.636121 ACGAGCAACAACGATCTGTTTATTA 59.364 36.000 0.00 0.00 39.29 0.98
4447 4474 4.451096 ACGAGCAACAACGATCTGTTTATT 59.549 37.500 0.00 0.00 39.29 1.40
4448 4475 3.994392 ACGAGCAACAACGATCTGTTTAT 59.006 39.130 0.00 0.00 39.29 1.40
4449 4476 3.183574 CACGAGCAACAACGATCTGTTTA 59.816 43.478 0.00 0.00 39.29 2.01
4463 4491 3.131396 GGAAGAAGAAGAACACGAGCAA 58.869 45.455 0.00 0.00 0.00 3.91
4809 4837 3.866582 CGATGGTGGGGAGAGGCC 61.867 72.222 0.00 0.00 0.00 5.19
4810 4838 3.083997 ACGATGGTGGGGAGAGGC 61.084 66.667 0.00 0.00 0.00 4.70
4842 4870 2.365635 CACCGGAGAGGGATGGGT 60.366 66.667 9.46 0.00 46.96 4.51
4867 4895 1.494721 GAAGGGGGTGCAGAATGGATA 59.505 52.381 0.00 0.00 39.99 2.59
4868 4896 0.259938 GAAGGGGGTGCAGAATGGAT 59.740 55.000 0.00 0.00 39.99 3.41
4869 4897 1.139498 TGAAGGGGGTGCAGAATGGA 61.139 55.000 0.00 0.00 35.86 3.41
4870 4898 0.967380 GTGAAGGGGGTGCAGAATGG 60.967 60.000 0.00 0.00 35.86 3.16
4872 4900 1.142688 AGGTGAAGGGGGTGCAGAAT 61.143 55.000 0.00 0.00 0.00 2.40
4897 4964 3.066760 GGAACAAACAACCTCCTTGTCTG 59.933 47.826 0.00 0.00 42.70 3.51
4915 4982 3.294214 TCTCGTCTATTGTAGGGGGAAC 58.706 50.000 0.00 0.00 0.00 3.62
4924 4991 4.184629 GCAGGTTTGATCTCGTCTATTGT 58.815 43.478 0.00 0.00 0.00 2.71
4962 5036 6.634436 CGATTTGTTGGAGAAGAAAGAAACAG 59.366 38.462 0.00 0.00 28.63 3.16
4989 5063 4.552355 CCTGAAAACGGATTTTGGGTTAC 58.448 43.478 0.00 0.00 38.17 2.50
4991 5065 2.224185 GCCTGAAAACGGATTTTGGGTT 60.224 45.455 0.00 0.00 38.17 4.11
4999 5073 0.320374 TCAGTCGCCTGAAAACGGAT 59.680 50.000 0.00 0.00 44.67 4.18
5001 5075 4.354155 TCAGTCGCCTGAAAACGG 57.646 55.556 0.00 0.00 44.67 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.