Multiple sequence alignment - TraesCS6B01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G381700 chr6B 100.000 4554 0 0 1 4554 656516057 656511504 0.000000e+00 8410
1 TraesCS6B01G381700 chr6D 95.607 865 32 3 2695 3557 434021692 434020832 0.000000e+00 1382
2 TraesCS6B01G381700 chr6D 92.805 959 40 17 3598 4554 434020821 434019890 0.000000e+00 1362
3 TraesCS6B01G381700 chr6D 89.197 1009 58 17 1741 2714 434022695 434021703 0.000000e+00 1212
4 TraesCS6B01G381700 chr6D 81.693 437 53 16 554 975 434023444 434023020 5.640000e-89 339
5 TraesCS6B01G381700 chr6D 93.694 222 8 4 1 217 434024003 434023783 1.220000e-85 327
6 TraesCS6B01G381700 chr6A 92.505 974 60 6 2695 3660 580281634 580280666 0.000000e+00 1382
7 TraesCS6B01G381700 chr6A 93.726 797 28 10 3758 4554 580280511 580279737 0.000000e+00 1175
8 TraesCS6B01G381700 chr6A 79.416 1302 138 57 1 1236 580284581 580283344 0.000000e+00 800
9 TraesCS6B01G381700 chr6A 87.422 644 45 18 1586 2215 580282848 580282227 0.000000e+00 708
10 TraesCS6B01G381700 chr6A 92.857 224 14 2 2491 2714 580281866 580281645 1.580000e-84 324
11 TraesCS6B01G381700 chr6A 86.071 280 29 4 2215 2494 580282174 580281905 4.460000e-75 292
12 TraesCS6B01G381700 chr6A 91.463 82 7 0 3618 3699 580280604 580280523 3.720000e-21 113
13 TraesCS6B01G381700 chr4A 84.813 428 56 7 4127 4554 559946909 559946491 5.450000e-114 422
14 TraesCS6B01G381700 chr5A 82.236 501 75 10 4000 4491 597798684 597799179 1.960000e-113 420
15 TraesCS6B01G381700 chr4D 84.112 428 59 7 4127 4554 40123649 40124067 5.490000e-109 405
16 TraesCS6B01G381700 chr4B 83.371 445 62 9 4113 4554 58597942 58598377 7.100000e-108 401
17 TraesCS6B01G381700 chr5D 84.698 281 40 3 4084 4364 478965662 478965939 1.250000e-70 278
18 TraesCS6B01G381700 chr5D 91.304 138 9 2 3687 3824 240136089 240135955 7.780000e-43 185
19 TraesCS6B01G381700 chr5D 90.580 138 10 2 3687 3824 6202893 6203027 3.620000e-41 180
20 TraesCS6B01G381700 chrUn 91.304 138 9 2 3687 3824 440189664 440189530 7.780000e-43 185
21 TraesCS6B01G381700 chr7D 91.304 138 9 2 3687 3824 231553139 231553005 7.780000e-43 185
22 TraesCS6B01G381700 chr3D 90.580 138 10 2 3687 3824 21903009 21902875 3.620000e-41 180
23 TraesCS6B01G381700 chr2D 90.580 138 10 2 3687 3824 334230877 334230743 3.620000e-41 180
24 TraesCS6B01G381700 chr1D 90.580 138 10 2 3687 3824 19956400 19956266 3.620000e-41 180
25 TraesCS6B01G381700 chr1D 90.580 138 10 2 3687 3824 483916219 483916353 3.620000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G381700 chr6B 656511504 656516057 4553 True 8410.000000 8410 100.000000 1 4554 1 chr6B.!!$R1 4553
1 TraesCS6B01G381700 chr6D 434019890 434024003 4113 True 924.400000 1382 90.599200 1 4554 5 chr6D.!!$R1 4553
2 TraesCS6B01G381700 chr6A 580279737 580284581 4844 True 684.857143 1382 89.065714 1 4554 7 chr6A.!!$R1 4553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 729 0.031994 AGTTGTTTGCATTGTCCGGC 59.968 50.0 0.00 0.0 0.00 6.13 F
1206 1303 0.033504 ACCATCACATCGGCGGATAC 59.966 55.0 7.21 0.0 0.00 2.24 F
1565 1908 0.032615 TGGAGTGGTGCAGGGTTTTT 60.033 50.0 0.00 0.0 0.00 1.94 F
1743 2131 0.401738 AGTCACAACACCATCCTGGG 59.598 55.0 0.00 0.0 43.37 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1889 0.032615 AAAAACCCTGCACCACTCCA 60.033 50.0 0.00 0.00 0.00 3.86 R
2860 3393 0.175989 GGGTCTCCTCATCGACAACC 59.824 60.0 0.00 0.00 31.88 3.77 R
3346 3879 0.585764 ATCATTCGTCGTCGTCGTCG 60.586 55.0 14.18 14.18 46.06 5.12 R
3686 4335 0.834687 TACGCTTGGTGGGTTCTCCT 60.835 55.0 0.00 0.00 42.13 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.124238 TCGGTAAACAAACTTCCACTGAG 58.876 43.478 0.00 0.00 0.00 3.35
36 37 3.303791 GGTAAACAAACTTCCACTGAGCG 60.304 47.826 0.00 0.00 0.00 5.03
37 38 2.325583 AACAAACTTCCACTGAGCGA 57.674 45.000 0.00 0.00 0.00 4.93
38 39 1.583054 ACAAACTTCCACTGAGCGAC 58.417 50.000 0.00 0.00 0.00 5.19
40 41 0.468226 AAACTTCCACTGAGCGACCA 59.532 50.000 0.00 0.00 0.00 4.02
41 42 0.249911 AACTTCCACTGAGCGACCAC 60.250 55.000 0.00 0.00 0.00 4.16
43 44 2.099652 CTTCCACTGAGCGACCACCA 62.100 60.000 0.00 0.00 0.00 4.17
44 45 2.047844 CCACTGAGCGACCACCAG 60.048 66.667 0.00 0.00 0.00 4.00
106 112 4.351054 GGGGCAGTGGACAGTGGG 62.351 72.222 9.03 0.00 32.50 4.61
166 172 2.757099 CTCCAGGTTGCATGGGCC 60.757 66.667 5.01 0.00 40.13 5.80
221 238 4.383118 GGTGGTGTCTAGTGCATGATTAGT 60.383 45.833 0.00 0.00 0.00 2.24
237 254 8.454106 GCATGATTAGTGTTCAGTGTTTCTTAT 58.546 33.333 0.00 0.00 0.00 1.73
282 318 7.134362 TGAGGAAAGAGCATCATCTATTCTT 57.866 36.000 0.00 0.00 37.82 2.52
285 321 8.820153 AGGAAAGAGCATCATCTATTCTTTTT 57.180 30.769 0.06 0.00 37.99 1.94
305 341 6.584185 TTTTTCTTTTAGGCTGGTGGTATC 57.416 37.500 0.00 0.00 0.00 2.24
306 342 5.514500 TTTCTTTTAGGCTGGTGGTATCT 57.486 39.130 0.00 0.00 0.00 1.98
307 343 6.630203 TTTCTTTTAGGCTGGTGGTATCTA 57.370 37.500 0.00 0.00 0.00 1.98
308 344 5.871396 TCTTTTAGGCTGGTGGTATCTAG 57.129 43.478 0.00 0.00 0.00 2.43
309 345 5.278061 TCTTTTAGGCTGGTGGTATCTAGT 58.722 41.667 0.00 0.00 0.00 2.57
310 346 5.128827 TCTTTTAGGCTGGTGGTATCTAGTG 59.871 44.000 0.00 0.00 0.00 2.74
311 347 1.123928 AGGCTGGTGGTATCTAGTGC 58.876 55.000 0.00 0.00 0.00 4.40
346 382 7.042797 TGCTATTTTAATGGGATTGAGAAGC 57.957 36.000 0.00 0.00 0.00 3.86
366 402 8.635877 AGAAGCAACTATCTACATTTAAGTCG 57.364 34.615 0.00 0.00 0.00 4.18
377 413 7.478322 TCTACATTTAAGTCGCCACTAACTAG 58.522 38.462 0.00 0.00 30.14 2.57
378 414 5.416947 ACATTTAAGTCGCCACTAACTAGG 58.583 41.667 0.00 0.00 30.14 3.02
379 415 5.186409 ACATTTAAGTCGCCACTAACTAGGA 59.814 40.000 0.00 0.00 30.14 2.94
380 416 4.978083 TTAAGTCGCCACTAACTAGGAG 57.022 45.455 0.00 0.00 30.14 3.69
381 417 2.510928 AGTCGCCACTAACTAGGAGT 57.489 50.000 0.00 0.00 0.00 3.85
382 418 2.367486 AGTCGCCACTAACTAGGAGTC 58.633 52.381 0.00 0.00 0.00 3.36
383 419 2.026075 AGTCGCCACTAACTAGGAGTCT 60.026 50.000 0.00 0.00 0.00 3.24
384 420 3.199508 AGTCGCCACTAACTAGGAGTCTA 59.800 47.826 0.00 0.00 0.00 2.59
396 432 3.157750 AGGAGTCTAAGACGGACAAGT 57.842 47.619 0.00 0.00 37.67 3.16
399 435 3.255149 GGAGTCTAAGACGGACAAGTGAA 59.745 47.826 0.00 0.00 37.67 3.18
406 442 3.458189 AGACGGACAAGTGAAACAAGAG 58.542 45.455 0.00 0.00 41.43 2.85
426 462 5.502079 AGAGGATATTGATCGGACGACTAT 58.498 41.667 0.00 0.00 32.28 2.12
447 491 8.366671 ACTATTGATGTCGCCTAAGAAATAAC 57.633 34.615 0.00 0.00 0.00 1.89
456 500 6.627671 GTCGCCTAAGAAATAACTATTTTGCG 59.372 38.462 0.00 0.00 36.13 4.85
470 514 2.411628 TTTGCGAGCCAGCCTAAATA 57.588 45.000 0.00 0.00 36.02 1.40
471 515 2.638480 TTGCGAGCCAGCCTAAATAT 57.362 45.000 0.00 0.00 36.02 1.28
473 517 3.319137 TGCGAGCCAGCCTAAATATAG 57.681 47.619 0.00 0.00 36.02 1.31
475 519 3.254892 GCGAGCCAGCCTAAATATAGTC 58.745 50.000 0.00 0.00 0.00 2.59
476 520 3.306088 GCGAGCCAGCCTAAATATAGTCA 60.306 47.826 0.00 0.00 0.00 3.41
477 521 4.238514 CGAGCCAGCCTAAATATAGTCAC 58.761 47.826 0.00 0.00 0.00 3.67
478 522 4.021894 CGAGCCAGCCTAAATATAGTCACT 60.022 45.833 0.00 0.00 0.00 3.41
479 523 5.474825 GAGCCAGCCTAAATATAGTCACTC 58.525 45.833 0.00 0.00 0.00 3.51
480 524 4.901849 AGCCAGCCTAAATATAGTCACTCA 59.098 41.667 0.00 0.00 0.00 3.41
481 525 4.991687 GCCAGCCTAAATATAGTCACTCAC 59.008 45.833 0.00 0.00 0.00 3.51
482 526 5.221541 GCCAGCCTAAATATAGTCACTCACT 60.222 44.000 0.00 0.00 39.41 3.41
483 527 6.451393 CCAGCCTAAATATAGTCACTCACTC 58.549 44.000 0.00 0.00 36.43 3.51
484 528 6.040955 CCAGCCTAAATATAGTCACTCACTCA 59.959 42.308 0.00 0.00 36.43 3.41
485 529 7.256119 CCAGCCTAAATATAGTCACTCACTCAT 60.256 40.741 0.00 0.00 36.43 2.90
486 530 8.147058 CAGCCTAAATATAGTCACTCACTCATT 58.853 37.037 0.00 0.00 36.43 2.57
487 531 8.709308 AGCCTAAATATAGTCACTCACTCATTT 58.291 33.333 0.00 0.00 36.43 2.32
488 532 9.331282 GCCTAAATATAGTCACTCACTCATTTT 57.669 33.333 0.00 0.00 36.43 1.82
528 573 8.826710 TCCATCGATATTGAAACATAGTGAAAC 58.173 33.333 0.00 0.00 0.00 2.78
579 656 3.616379 ACTTTGTGGAAATTGTTGCAACG 59.384 39.130 23.79 7.78 36.77 4.10
592 669 1.104577 TGCAACGGTCAAAGGAACCC 61.105 55.000 0.00 0.00 0.00 4.11
597 674 0.671796 CGGTCAAAGGAACCCAAACC 59.328 55.000 0.00 0.00 0.00 3.27
613 690 3.191371 CCAAACCATAGCTTGAGTTCACC 59.809 47.826 0.00 0.00 0.00 4.02
626 703 4.985538 TGAGTTCACCCTTCAAAGCTAAT 58.014 39.130 0.00 0.00 0.00 1.73
627 704 5.003804 TGAGTTCACCCTTCAAAGCTAATC 58.996 41.667 0.00 0.00 0.00 1.75
630 707 2.017049 CACCCTTCAAAGCTAATCGGG 58.983 52.381 6.50 6.50 36.30 5.14
645 722 1.686355 TCGGGTGAGTTGTTTGCATT 58.314 45.000 0.00 0.00 0.00 3.56
650 727 2.384382 GTGAGTTGTTTGCATTGTCCG 58.616 47.619 0.00 0.00 0.00 4.79
652 729 0.031994 AGTTGTTTGCATTGTCCGGC 59.968 50.000 0.00 0.00 0.00 6.13
660 737 1.672030 CATTGTCCGGCTGCAGTGA 60.672 57.895 16.64 7.10 0.00 3.41
663 740 2.280797 GTCCGGCTGCAGTGAACA 60.281 61.111 16.64 0.00 0.00 3.18
665 742 1.073025 TCCGGCTGCAGTGAACAAT 59.927 52.632 16.64 0.00 0.00 2.71
675 752 5.106396 GCTGCAGTGAACAATGATTCTAGTT 60.106 40.000 16.64 0.00 0.00 2.24
678 755 6.072508 TGCAGTGAACAATGATTCTAGTTTCC 60.073 38.462 6.44 0.00 0.00 3.13
699 789 3.694566 CCAAGCCATTTGTAGTAACCCTC 59.305 47.826 0.00 0.00 34.87 4.30
735 825 3.703052 GCCCACCATCAAGATCAAGAATT 59.297 43.478 0.00 0.00 0.00 2.17
736 826 4.889409 GCCCACCATCAAGATCAAGAATTA 59.111 41.667 0.00 0.00 0.00 1.40
737 827 5.360714 GCCCACCATCAAGATCAAGAATTAA 59.639 40.000 0.00 0.00 0.00 1.40
739 829 6.377996 CCCACCATCAAGATCAAGAATTAACA 59.622 38.462 0.00 0.00 0.00 2.41
740 830 7.415989 CCCACCATCAAGATCAAGAATTAACAG 60.416 40.741 0.00 0.00 0.00 3.16
741 831 7.415989 CCACCATCAAGATCAAGAATTAACAGG 60.416 40.741 0.00 0.00 0.00 4.00
742 832 6.604795 ACCATCAAGATCAAGAATTAACAGGG 59.395 38.462 0.00 0.00 0.00 4.45
748 841 9.007901 CAAGATCAAGAATTAACAGGGGATATC 57.992 37.037 0.00 0.00 0.00 1.63
759 852 2.227388 CAGGGGATATCGCTTGCAATTC 59.773 50.000 17.11 0.50 36.43 2.17
763 856 3.565482 GGGATATCGCTTGCAATTCAGAA 59.435 43.478 12.31 0.00 0.00 3.02
772 865 5.164119 CGCTTGCAATTCAGAAGATTTTGAC 60.164 40.000 0.00 0.00 0.00 3.18
786 879 6.926630 AGATTTTGACAGGAGAGTAAGAGT 57.073 37.500 0.00 0.00 0.00 3.24
788 881 6.495181 AGATTTTGACAGGAGAGTAAGAGTGA 59.505 38.462 0.00 0.00 0.00 3.41
790 883 7.776618 TTTTGACAGGAGAGTAAGAGTGATA 57.223 36.000 0.00 0.00 0.00 2.15
795 888 6.606069 ACAGGAGAGTAAGAGTGATATAGCA 58.394 40.000 0.00 0.00 0.00 3.49
796 889 6.488683 ACAGGAGAGTAAGAGTGATATAGCAC 59.511 42.308 13.25 13.25 39.05 4.40
829 923 5.237344 GTGTTGCATGGATAACTCTACCATC 59.763 44.000 0.00 0.00 41.68 3.51
860 955 8.319057 AGGAGTTAATTGTCATGGATGTAGTA 57.681 34.615 0.00 0.00 0.00 1.82
893 988 6.478512 AGAAACAGGTAAAAAGGATTTGCA 57.521 33.333 0.00 0.00 39.02 4.08
899 994 6.710295 ACAGGTAAAAAGGATTTGCATTTTCC 59.290 34.615 0.00 0.00 39.34 3.13
910 1005 5.815233 TTTGCATTTTCCCCATCAACTAA 57.185 34.783 0.00 0.00 0.00 2.24
916 1011 6.625960 GCATTTTCCCCATCAACTAAGAAGTC 60.626 42.308 0.00 0.00 33.75 3.01
926 1021 3.870633 ACTAAGAAGTCGTTGCCTAGG 57.129 47.619 3.67 3.67 0.00 3.02
930 1025 3.589495 AGAAGTCGTTGCCTAGGTAAC 57.411 47.619 27.58 27.58 37.36 2.50
948 1043 6.095947 GGTAACTAGAGAAAAATGCGACAG 57.904 41.667 0.00 0.00 0.00 3.51
952 1047 6.861065 ACTAGAGAAAAATGCGACAGAAAA 57.139 33.333 0.00 0.00 0.00 2.29
956 1051 6.507023 AGAGAAAAATGCGACAGAAAAACAT 58.493 32.000 0.00 0.00 0.00 2.71
961 1056 2.980586 TGCGACAGAAAAACATGAACG 58.019 42.857 0.00 0.00 0.00 3.95
965 1060 5.121611 TGCGACAGAAAAACATGAACGATAT 59.878 36.000 0.00 0.00 0.00 1.63
969 1064 8.985694 CGACAGAAAAACATGAACGATATAAAC 58.014 33.333 0.00 0.00 0.00 2.01
994 1090 3.105283 CCACTACCTACCAAGTTAGCCT 58.895 50.000 0.00 0.00 0.00 4.58
1003 1099 2.976882 ACCAAGTTAGCCTAGAACACCA 59.023 45.455 0.00 0.00 0.00 4.17
1005 1101 3.335579 CAAGTTAGCCTAGAACACCACC 58.664 50.000 0.00 0.00 0.00 4.61
1006 1102 2.616524 AGTTAGCCTAGAACACCACCA 58.383 47.619 0.00 0.00 0.00 4.17
1007 1103 2.976882 AGTTAGCCTAGAACACCACCAA 59.023 45.455 0.00 0.00 0.00 3.67
1015 1111 4.343814 CCTAGAACACCACCAACCAAAATT 59.656 41.667 0.00 0.00 0.00 1.82
1020 1116 3.261897 ACACCACCAACCAAAATTTCACA 59.738 39.130 0.00 0.00 0.00 3.58
1030 1126 7.960195 CCAACCAAAATTTCACAACAAAGTAAC 59.040 33.333 0.00 0.00 0.00 2.50
1036 1132 9.665719 AAAATTTCACAACAAAGTAACCTCAAT 57.334 25.926 0.00 0.00 0.00 2.57
1042 1138 9.733556 TCACAACAAAGTAACCTCAATATATGT 57.266 29.630 0.00 0.00 0.00 2.29
1044 1140 8.879759 ACAACAAAGTAACCTCAATATATGTCG 58.120 33.333 0.00 0.00 0.00 4.35
1045 1141 7.478520 ACAAAGTAACCTCAATATATGTCGC 57.521 36.000 0.00 0.00 0.00 5.19
1056 1152 6.159293 TCAATATATGTCGCTGAGGTGATTC 58.841 40.000 0.00 0.00 34.31 2.52
1059 1155 0.388520 TGTCGCTGAGGTGATTCGTG 60.389 55.000 0.00 0.00 34.31 4.35
1063 1159 2.165641 TCGCTGAGGTGATTCGTGTATT 59.834 45.455 0.00 0.00 0.00 1.89
1075 1171 5.236263 TGATTCGTGTATTGATATGCACCAC 59.764 40.000 0.00 0.00 42.37 4.16
1077 1173 2.548057 CGTGTATTGATATGCACCACCC 59.452 50.000 0.00 0.00 42.37 4.61
1078 1174 3.744214 CGTGTATTGATATGCACCACCCT 60.744 47.826 0.00 0.00 42.37 4.34
1079 1175 3.565482 GTGTATTGATATGCACCACCCTG 59.435 47.826 0.00 0.00 40.31 4.45
1092 1188 2.304092 CCACCCTGATCATCACCATTG 58.696 52.381 0.00 0.00 0.00 2.82
1097 1193 0.466007 TGATCATCACCATTGCCCCG 60.466 55.000 0.00 0.00 0.00 5.73
1098 1194 0.466189 GATCATCACCATTGCCCCGT 60.466 55.000 0.00 0.00 0.00 5.28
1099 1195 0.843309 ATCATCACCATTGCCCCGTA 59.157 50.000 0.00 0.00 0.00 4.02
1123 1219 2.159421 TCGATCGCTCTTACTTCACCAC 60.159 50.000 11.09 0.00 0.00 4.16
1127 1223 1.719780 CGCTCTTACTTCACCACGAAC 59.280 52.381 0.00 0.00 0.00 3.95
1134 1230 6.518493 TCTTACTTCACCACGAACAAACTAT 58.482 36.000 0.00 0.00 0.00 2.12
1135 1231 6.422701 TCTTACTTCACCACGAACAAACTATG 59.577 38.462 0.00 0.00 0.00 2.23
1155 1251 2.250188 GGAACATTTCAATGAACGCCG 58.750 47.619 6.53 0.00 39.67 6.46
1167 1264 3.355203 AACGCCGCAAATCCATGCC 62.355 57.895 0.00 0.00 43.47 4.40
1170 1267 2.799452 GCCGCAAATCCATGCCCAT 61.799 57.895 0.00 0.00 43.47 4.00
1176 1273 3.656559 GCAAATCCATGCCCATTGATAC 58.343 45.455 0.00 0.00 40.49 2.24
1177 1274 3.069872 GCAAATCCATGCCCATTGATACA 59.930 43.478 0.00 0.00 40.49 2.29
1178 1275 4.443175 GCAAATCCATGCCCATTGATACAA 60.443 41.667 0.00 0.00 40.49 2.41
1184 1281 5.301551 TCCATGCCCATTGATACAATACAAC 59.698 40.000 0.00 0.00 0.00 3.32
1196 1293 6.889177 TGATACAATACAACCAACCATCACAT 59.111 34.615 0.00 0.00 0.00 3.21
1206 1303 0.033504 ACCATCACATCGGCGGATAC 59.966 55.000 7.21 0.00 0.00 2.24
1236 1333 8.859090 ACTCCAATTTTGATGATTTGACTTGTA 58.141 29.630 0.00 0.00 0.00 2.41
1242 1339 8.939201 TTTTGATGATTTGACTTGTAAAAGCA 57.061 26.923 4.30 4.30 36.26 3.91
1243 1340 8.939201 TTTGATGATTTGACTTGTAAAAGCAA 57.061 26.923 5.75 0.00 35.54 3.91
1246 1343 8.816144 TGATGATTTGACTTGTAAAAGCAAAAC 58.184 29.630 14.91 13.39 35.54 2.43
1247 1344 8.715191 ATGATTTGACTTGTAAAAGCAAAACA 57.285 26.923 18.50 18.50 35.54 2.83
1248 1345 8.715191 TGATTTGACTTGTAAAAGCAAAACAT 57.285 26.923 14.91 4.25 33.24 2.71
1258 1529 0.318955 AGCAAAACATCGCACAAGCC 60.319 50.000 0.00 0.00 37.52 4.35
1280 1551 1.202405 TGTGACGATCATCCCATGACG 60.202 52.381 0.00 0.00 43.01 4.35
1281 1552 0.389025 TGACGATCATCCCATGACGG 59.611 55.000 0.00 0.00 43.01 4.79
1282 1553 0.389391 GACGATCATCCCATGACGGT 59.611 55.000 0.00 3.45 43.01 4.83
1284 1555 0.601046 CGATCATCCCATGACGGTGG 60.601 60.000 0.00 0.00 43.01 4.61
1286 1557 0.918983 ATCATCCCATGACGGTGGTT 59.081 50.000 0.00 0.00 43.01 3.67
1297 1568 0.536233 ACGGTGGTTGCATTGTGCTA 60.536 50.000 3.41 0.00 45.31 3.49
1303 1574 0.243636 GTTGCATTGTGCTACCCACC 59.756 55.000 5.42 0.00 45.31 4.61
1305 1576 0.178978 TGCATTGTGCTACCCACCAA 60.179 50.000 3.41 0.00 45.31 3.67
1315 1586 1.136961 TACCCACCAATGCCACCTCA 61.137 55.000 0.00 0.00 0.00 3.86
1318 1589 0.323633 CCACCAATGCCACCTCATGA 60.324 55.000 0.00 0.00 0.00 3.07
1319 1590 1.687054 CCACCAATGCCACCTCATGAT 60.687 52.381 0.00 0.00 0.00 2.45
1327 1598 1.362768 CCACCTCATGATGTGTGTCG 58.637 55.000 24.01 9.63 0.00 4.35
1330 1601 1.618343 ACCTCATGATGTGTGTCGTCA 59.382 47.619 2.52 0.00 44.76 4.35
1334 1605 2.094752 TCATGATGTGTGTCGTCATCGT 60.095 45.455 0.00 0.00 46.23 3.73
1336 1607 2.324860 TGATGTGTGTCGTCATCGTTC 58.675 47.619 0.00 0.00 42.05 3.95
1340 1611 1.804326 GTGTCGTCATCGTTCCCCG 60.804 63.158 0.00 0.00 38.33 5.73
1359 1663 0.179129 GCCGCATCTTGGTGAATTGG 60.179 55.000 0.00 0.00 0.00 3.16
1372 1676 3.243839 GGTGAATTGGTGTGCAAGAACAT 60.244 43.478 0.00 0.00 31.49 2.71
1377 1681 3.769739 TGGTGTGCAAGAACATCTAGT 57.230 42.857 0.00 0.00 32.11 2.57
1382 1686 4.692625 GTGTGCAAGAACATCTAGTCATGT 59.307 41.667 0.00 0.00 38.74 3.21
1398 1702 1.800586 CATGTTGTCAGGAGACCAACG 59.199 52.381 0.00 0.00 44.33 4.10
1404 1708 3.093814 TGTCAGGAGACCAACGCTAATA 58.906 45.455 0.00 0.00 44.33 0.98
1429 1733 1.037493 TCGAGCACTGTTGGTACTGT 58.963 50.000 0.00 0.00 36.96 3.55
1437 1741 3.990469 CACTGTTGGTACTGTAAGCTCTG 59.010 47.826 0.00 0.00 37.60 3.35
1440 1744 5.031066 TGTTGGTACTGTAAGCTCTGTTT 57.969 39.130 0.00 0.00 37.60 2.83
1442 1746 3.399330 TGGTACTGTAAGCTCTGTTTGC 58.601 45.455 0.00 0.00 37.60 3.68
1503 1846 2.690840 AGGTAGGAGTGGTGACAAGTT 58.309 47.619 0.00 0.00 46.06 2.66
1504 1847 3.046374 AGGTAGGAGTGGTGACAAGTTT 58.954 45.455 0.00 0.00 46.06 2.66
1505 1848 3.071167 AGGTAGGAGTGGTGACAAGTTTC 59.929 47.826 0.00 0.00 46.06 2.78
1506 1849 3.071167 GGTAGGAGTGGTGACAAGTTTCT 59.929 47.826 0.00 0.00 46.06 2.52
1507 1850 4.282703 GGTAGGAGTGGTGACAAGTTTCTA 59.717 45.833 0.00 0.00 46.06 2.10
1508 1851 5.046520 GGTAGGAGTGGTGACAAGTTTCTAT 60.047 44.000 0.00 0.00 46.06 1.98
1509 1852 5.568620 AGGAGTGGTGACAAGTTTCTATT 57.431 39.130 0.00 0.00 46.06 1.73
1510 1853 5.941788 AGGAGTGGTGACAAGTTTCTATTT 58.058 37.500 0.00 0.00 46.06 1.40
1511 1854 6.365520 AGGAGTGGTGACAAGTTTCTATTTT 58.634 36.000 0.00 0.00 46.06 1.82
1512 1855 7.514721 AGGAGTGGTGACAAGTTTCTATTTTA 58.485 34.615 0.00 0.00 46.06 1.52
1513 1856 7.661847 AGGAGTGGTGACAAGTTTCTATTTTAG 59.338 37.037 0.00 0.00 46.06 1.85
1514 1857 7.444487 GGAGTGGTGACAAGTTTCTATTTTAGT 59.556 37.037 0.00 0.00 46.06 2.24
1515 1858 8.154649 AGTGGTGACAAGTTTCTATTTTAGTG 57.845 34.615 0.00 0.00 46.06 2.74
1516 1859 7.990886 AGTGGTGACAAGTTTCTATTTTAGTGA 59.009 33.333 0.00 0.00 46.06 3.41
1517 1860 8.617809 GTGGTGACAAGTTTCTATTTTAGTGAA 58.382 33.333 0.00 0.00 46.06 3.18
1518 1861 8.836413 TGGTGACAAGTTTCTATTTTAGTGAAG 58.164 33.333 0.00 0.00 37.44 3.02
1519 1862 8.290325 GGTGACAAGTTTCTATTTTAGTGAAGG 58.710 37.037 0.00 0.00 0.00 3.46
1520 1863 9.052759 GTGACAAGTTTCTATTTTAGTGAAGGA 57.947 33.333 0.00 0.00 0.00 3.36
1521 1864 9.273016 TGACAAGTTTCTATTTTAGTGAAGGAG 57.727 33.333 0.00 0.00 0.00 3.69
1522 1865 9.274206 GACAAGTTTCTATTTTAGTGAAGGAGT 57.726 33.333 0.00 0.00 0.00 3.85
1523 1866 9.057089 ACAAGTTTCTATTTTAGTGAAGGAGTG 57.943 33.333 0.00 0.00 0.00 3.51
1524 1867 8.507249 CAAGTTTCTATTTTAGTGAAGGAGTGG 58.493 37.037 0.00 0.00 0.00 4.00
1525 1868 7.746703 AGTTTCTATTTTAGTGAAGGAGTGGT 58.253 34.615 0.00 0.00 0.00 4.16
1526 1869 7.661847 AGTTTCTATTTTAGTGAAGGAGTGGTG 59.338 37.037 0.00 0.00 0.00 4.17
1527 1870 5.488341 TCTATTTTAGTGAAGGAGTGGTGC 58.512 41.667 0.00 0.00 0.00 5.01
1528 1871 2.163818 TTTAGTGAAGGAGTGGTGCG 57.836 50.000 0.00 0.00 0.00 5.34
1529 1872 1.334160 TTAGTGAAGGAGTGGTGCGA 58.666 50.000 0.00 0.00 0.00 5.10
1530 1873 0.888619 TAGTGAAGGAGTGGTGCGAG 59.111 55.000 0.00 0.00 0.00 5.03
1531 1874 1.115930 AGTGAAGGAGTGGTGCGAGT 61.116 55.000 0.00 0.00 0.00 4.18
1532 1875 0.249911 GTGAAGGAGTGGTGCGAGTT 60.250 55.000 0.00 0.00 0.00 3.01
1533 1876 0.468226 TGAAGGAGTGGTGCGAGTTT 59.532 50.000 0.00 0.00 0.00 2.66
1534 1877 1.134220 TGAAGGAGTGGTGCGAGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
1535 1878 1.531578 GAAGGAGTGGTGCGAGTTTTC 59.468 52.381 0.00 0.00 0.00 2.29
1536 1879 0.759346 AGGAGTGGTGCGAGTTTTCT 59.241 50.000 0.00 0.00 0.00 2.52
1537 1880 1.141053 AGGAGTGGTGCGAGTTTTCTT 59.859 47.619 0.00 0.00 0.00 2.52
1538 1881 1.947456 GGAGTGGTGCGAGTTTTCTTT 59.053 47.619 0.00 0.00 0.00 2.52
1539 1882 2.357952 GGAGTGGTGCGAGTTTTCTTTT 59.642 45.455 0.00 0.00 0.00 2.27
1540 1883 3.562557 GGAGTGGTGCGAGTTTTCTTTTA 59.437 43.478 0.00 0.00 0.00 1.52
1541 1884 4.319549 GGAGTGGTGCGAGTTTTCTTTTAG 60.320 45.833 0.00 0.00 0.00 1.85
1542 1885 4.448210 AGTGGTGCGAGTTTTCTTTTAGA 58.552 39.130 0.00 0.00 0.00 2.10
1543 1886 4.272748 AGTGGTGCGAGTTTTCTTTTAGAC 59.727 41.667 0.00 0.00 0.00 2.59
1544 1887 4.034742 GTGGTGCGAGTTTTCTTTTAGACA 59.965 41.667 0.00 0.00 0.00 3.41
1545 1888 4.636648 TGGTGCGAGTTTTCTTTTAGACAA 59.363 37.500 0.00 0.00 0.00 3.18
1546 1889 5.298276 TGGTGCGAGTTTTCTTTTAGACAAT 59.702 36.000 0.00 0.00 0.00 2.71
1547 1890 5.625311 GGTGCGAGTTTTCTTTTAGACAATG 59.375 40.000 0.00 0.00 0.00 2.82
1548 1891 5.625311 GTGCGAGTTTTCTTTTAGACAATGG 59.375 40.000 0.00 0.00 0.00 3.16
1549 1892 5.529430 TGCGAGTTTTCTTTTAGACAATGGA 59.471 36.000 0.00 0.00 0.00 3.41
1550 1893 6.080406 GCGAGTTTTCTTTTAGACAATGGAG 58.920 40.000 0.00 0.00 0.00 3.86
1551 1894 6.293462 GCGAGTTTTCTTTTAGACAATGGAGT 60.293 38.462 0.00 0.00 0.00 3.85
1552 1895 7.072030 CGAGTTTTCTTTTAGACAATGGAGTG 58.928 38.462 0.00 0.00 0.00 3.51
1553 1896 7.277174 AGTTTTCTTTTAGACAATGGAGTGG 57.723 36.000 0.00 0.00 0.00 4.00
1554 1897 6.833933 AGTTTTCTTTTAGACAATGGAGTGGT 59.166 34.615 0.00 0.00 0.00 4.16
1555 1898 6.633500 TTTCTTTTAGACAATGGAGTGGTG 57.367 37.500 0.00 0.00 0.00 4.17
1556 1899 4.072131 TCTTTTAGACAATGGAGTGGTGC 58.928 43.478 0.00 0.00 0.00 5.01
1557 1900 3.500448 TTTAGACAATGGAGTGGTGCA 57.500 42.857 0.00 0.00 0.00 4.57
1558 1901 2.768253 TAGACAATGGAGTGGTGCAG 57.232 50.000 0.00 0.00 0.00 4.41
1559 1902 0.037303 AGACAATGGAGTGGTGCAGG 59.963 55.000 0.00 0.00 0.00 4.85
1560 1903 0.962356 GACAATGGAGTGGTGCAGGG 60.962 60.000 0.00 0.00 0.00 4.45
1561 1904 1.075482 CAATGGAGTGGTGCAGGGT 59.925 57.895 0.00 0.00 0.00 4.34
1562 1905 0.540365 CAATGGAGTGGTGCAGGGTT 60.540 55.000 0.00 0.00 0.00 4.11
1563 1906 0.188342 AATGGAGTGGTGCAGGGTTT 59.812 50.000 0.00 0.00 0.00 3.27
1564 1907 0.188342 ATGGAGTGGTGCAGGGTTTT 59.812 50.000 0.00 0.00 0.00 2.43
1565 1908 0.032615 TGGAGTGGTGCAGGGTTTTT 60.033 50.000 0.00 0.00 0.00 1.94
1591 1934 8.980481 TCTTTTCTTTTTGAGACAATAGGAGT 57.020 30.769 0.00 0.00 33.02 3.85
1592 1935 8.840321 TCTTTTCTTTTTGAGACAATAGGAGTG 58.160 33.333 0.00 0.00 33.02 3.51
1593 1936 7.510549 TTTCTTTTTGAGACAATAGGAGTGG 57.489 36.000 0.00 0.00 33.02 4.00
1594 1937 6.187727 TCTTTTTGAGACAATAGGAGTGGT 57.812 37.500 0.00 0.00 0.00 4.16
1595 1938 5.997746 TCTTTTTGAGACAATAGGAGTGGTG 59.002 40.000 0.00 0.00 0.00 4.17
1596 1939 4.974645 TTTGAGACAATAGGAGTGGTGT 57.025 40.909 0.00 0.00 0.00 4.16
1597 1940 6.428083 TTTTGAGACAATAGGAGTGGTGTA 57.572 37.500 0.00 0.00 0.00 2.90
1598 1941 5.661056 TTGAGACAATAGGAGTGGTGTAG 57.339 43.478 0.00 0.00 0.00 2.74
1599 1942 4.023980 TGAGACAATAGGAGTGGTGTAGG 58.976 47.826 0.00 0.00 0.00 3.18
1600 1943 4.024670 GAGACAATAGGAGTGGTGTAGGT 58.975 47.826 0.00 0.00 0.00 3.08
1615 1960 6.539103 GTGGTGTAGGTGAAAAAGATAGGATC 59.461 42.308 0.00 0.00 0.00 3.36
1616 1961 6.443849 TGGTGTAGGTGAAAAAGATAGGATCT 59.556 38.462 0.00 0.00 42.61 2.75
1623 1968 5.415701 GTGAAAAAGATAGGATCTGTGGCAA 59.584 40.000 0.00 0.00 40.13 4.52
1624 1969 6.009589 TGAAAAAGATAGGATCTGTGGCAAA 58.990 36.000 0.00 0.00 40.13 3.68
1631 1976 3.028850 AGGATCTGTGGCAAATGAATGG 58.971 45.455 0.00 0.00 0.00 3.16
1649 2037 3.408157 TGGATGGGCCTAGTACTGTAA 57.592 47.619 5.39 0.00 37.63 2.41
1654 2042 6.387513 TGGATGGGCCTAGTACTGTAATTTTA 59.612 38.462 5.39 0.00 37.63 1.52
1658 2046 6.444493 TGGGCCTAGTACTGTAATTTTAGGAA 59.556 38.462 5.39 0.00 31.42 3.36
1663 2051 8.827677 CCTAGTACTGTAATTTTAGGAACATGC 58.172 37.037 5.39 0.00 31.42 4.06
1685 2073 6.073981 TGCATGAATAATAGTATTTGGGCCA 58.926 36.000 0.00 0.00 29.69 5.36
1687 2075 6.868339 GCATGAATAATAGTATTTGGGCCAAC 59.132 38.462 20.79 8.85 29.69 3.77
1690 2078 7.001674 TGAATAATAGTATTTGGGCCAACGAT 58.998 34.615 20.79 13.66 29.69 3.73
1695 2083 2.525105 ATTTGGGCCAACGATTACCT 57.475 45.000 20.79 0.00 0.00 3.08
1696 2084 2.296073 TTTGGGCCAACGATTACCTT 57.704 45.000 20.79 0.00 0.00 3.50
1697 2085 2.296073 TTGGGCCAACGATTACCTTT 57.704 45.000 16.66 0.00 0.00 3.11
1699 2087 2.599677 TGGGCCAACGATTACCTTTTT 58.400 42.857 2.13 0.00 0.00 1.94
1716 2104 2.911552 TTTTTAGGGGTGGGCCTAAG 57.088 50.000 4.53 0.00 34.45 2.18
1717 2105 2.062773 TTTTAGGGGTGGGCCTAAGA 57.937 50.000 4.53 0.00 34.45 2.10
1718 2106 2.296943 TTTAGGGGTGGGCCTAAGAT 57.703 50.000 4.53 0.00 34.45 2.40
1719 2107 2.296943 TTAGGGGTGGGCCTAAGATT 57.703 50.000 4.53 0.00 34.45 2.40
1720 2108 3.441505 TTAGGGGTGGGCCTAAGATTA 57.558 47.619 4.53 0.00 34.45 1.75
1723 2111 1.519498 GGGTGGGCCTAAGATTACCT 58.481 55.000 4.53 0.00 34.45 3.08
1724 2112 2.697967 GGGTGGGCCTAAGATTACCTA 58.302 52.381 4.53 0.00 34.45 3.08
1725 2113 2.638363 GGGTGGGCCTAAGATTACCTAG 59.362 54.545 4.53 0.00 34.45 3.02
1728 2116 3.965347 GTGGGCCTAAGATTACCTAGTCA 59.035 47.826 4.53 0.00 0.00 3.41
1729 2117 3.965347 TGGGCCTAAGATTACCTAGTCAC 59.035 47.826 4.53 0.00 0.00 3.67
1730 2118 3.965347 GGGCCTAAGATTACCTAGTCACA 59.035 47.826 0.84 0.00 0.00 3.58
1731 2119 4.407945 GGGCCTAAGATTACCTAGTCACAA 59.592 45.833 0.84 0.00 0.00 3.33
1733 2121 5.105064 GGCCTAAGATTACCTAGTCACAACA 60.105 44.000 0.00 0.00 0.00 3.33
1736 2124 5.818678 AAGATTACCTAGTCACAACACCA 57.181 39.130 0.00 0.00 0.00 4.17
1737 2125 6.374417 AAGATTACCTAGTCACAACACCAT 57.626 37.500 0.00 0.00 0.00 3.55
1738 2126 5.978814 AGATTACCTAGTCACAACACCATC 58.021 41.667 0.00 0.00 0.00 3.51
1739 2127 4.546829 TTACCTAGTCACAACACCATCC 57.453 45.455 0.00 0.00 0.00 3.51
1740 2128 2.621070 ACCTAGTCACAACACCATCCT 58.379 47.619 0.00 0.00 0.00 3.24
1741 2129 2.303022 ACCTAGTCACAACACCATCCTG 59.697 50.000 0.00 0.00 0.00 3.86
1742 2130 2.355108 CCTAGTCACAACACCATCCTGG 60.355 54.545 0.00 0.00 45.02 4.45
1743 2131 0.401738 AGTCACAACACCATCCTGGG 59.598 55.000 0.00 0.00 43.37 4.45
1744 2132 1.074775 TCACAACACCATCCTGGGC 59.925 57.895 0.00 0.00 43.37 5.36
1745 2133 1.075482 CACAACACCATCCTGGGCT 59.925 57.895 0.00 0.00 43.37 5.19
1746 2134 0.962356 CACAACACCATCCTGGGCTC 60.962 60.000 0.00 0.00 43.37 4.70
1747 2135 1.379044 CAACACCATCCTGGGCTCC 60.379 63.158 0.00 0.00 43.37 4.70
1748 2136 2.971598 AACACCATCCTGGGCTCCG 61.972 63.158 0.00 0.00 43.37 4.63
1772 2160 1.051556 GGGCCTAGCTAAGAGCCACT 61.052 60.000 23.42 0.00 43.77 4.00
1773 2161 0.833949 GGCCTAGCTAAGAGCCACTT 59.166 55.000 19.34 0.00 43.77 3.16
1797 2185 1.149101 AGGCCCAGAAAAGGAACAGA 58.851 50.000 0.00 0.00 0.00 3.41
1875 2263 0.469917 CCGTCATGGCAGGACCTAAT 59.530 55.000 24.73 0.00 40.22 1.73
2041 2443 4.855340 TCAGGGTTTCCATCTCCAATTAC 58.145 43.478 0.00 0.00 34.83 1.89
2110 2513 1.193874 CAACTTAGGACGTCGGTTTGC 59.806 52.381 9.92 0.00 0.00 3.68
2161 2564 3.519510 TCTTGGGATTCTTGAATCTCGGT 59.480 43.478 18.96 0.00 32.31 4.69
2176 2579 0.468226 TCGGTCCTCTGCAGTTTGTT 59.532 50.000 14.67 0.00 0.00 2.83
2177 2580 1.689813 TCGGTCCTCTGCAGTTTGTTA 59.310 47.619 14.67 0.00 0.00 2.41
2178 2581 2.069273 CGGTCCTCTGCAGTTTGTTAG 58.931 52.381 14.67 1.93 0.00 2.34
2179 2582 2.548067 CGGTCCTCTGCAGTTTGTTAGT 60.548 50.000 14.67 0.00 0.00 2.24
2213 2616 3.244875 TGAATCTTGGCCTTCTGCAGTTA 60.245 43.478 14.67 2.24 43.89 2.24
2214 2617 3.659183 ATCTTGGCCTTCTGCAGTTAT 57.341 42.857 14.67 0.00 43.89 1.89
2257 2717 8.875803 CAGTTAGTTACACACTTTACTGTCAAA 58.124 33.333 0.00 0.00 39.66 2.69
2258 2718 9.095065 AGTTAGTTACACACTTTACTGTCAAAG 57.905 33.333 7.66 7.66 40.62 2.77
2278 2738 5.852282 AAGTGTCAAGTGCTTTGGTTAAT 57.148 34.783 2.44 0.00 37.39 1.40
2280 2740 4.887071 AGTGTCAAGTGCTTTGGTTAATGA 59.113 37.500 2.44 0.00 37.39 2.57
2314 2774 5.123027 CAGTTGCAGTTTTATTCTCCTCCTC 59.877 44.000 0.00 0.00 0.00 3.71
2315 2775 5.013599 AGTTGCAGTTTTATTCTCCTCCTCT 59.986 40.000 0.00 0.00 0.00 3.69
2318 2778 7.200434 TGCAGTTTTATTCTCCTCCTCTATT 57.800 36.000 0.00 0.00 0.00 1.73
2319 2779 7.050377 TGCAGTTTTATTCTCCTCCTCTATTG 58.950 38.462 0.00 0.00 0.00 1.90
2320 2780 7.092891 TGCAGTTTTATTCTCCTCCTCTATTGA 60.093 37.037 0.00 0.00 0.00 2.57
2378 2840 7.687941 ATTGTACTACCATTTCTTTGACTGG 57.312 36.000 0.00 0.00 34.84 4.00
2386 2848 3.943671 TTTCTTTGACTGGACCTTGGA 57.056 42.857 0.00 0.00 0.00 3.53
2395 2857 5.147032 TGACTGGACCTTGGAAATTTTCAT 58.853 37.500 11.09 0.00 0.00 2.57
2401 2863 3.840078 ACCTTGGAAATTTTCATCCTGGG 59.160 43.478 11.09 2.74 36.64 4.45
2451 2913 4.568072 ATTGCAGTCACCATACCAGTAA 57.432 40.909 0.00 0.00 0.00 2.24
2463 2925 6.018994 CACCATACCAGTAAATAGCTTCGTTC 60.019 42.308 0.00 0.00 0.00 3.95
2530 3034 5.720041 AGGTATGCTTAGTCCTCAGTGTAAA 59.280 40.000 0.00 0.00 0.00 2.01
2577 3082 1.002468 CACTTGGTTGAGTTGCTTCCG 60.002 52.381 0.00 0.00 0.00 4.30
2592 3097 2.549349 GCTTCCGTTCACCCTGTTTAGA 60.549 50.000 0.00 0.00 0.00 2.10
2688 3193 4.572985 TCTCTGTTTGTTGCAAGGAATG 57.427 40.909 0.00 0.00 0.00 2.67
2794 3327 1.153489 CAGCATCCTCCCTCACGTG 60.153 63.158 9.94 9.94 0.00 4.49
2848 3381 3.188786 GACGCCGACACTGCCATC 61.189 66.667 0.00 0.00 0.00 3.51
3331 3864 1.746615 GCTCATGTGCGTCCACCAT 60.747 57.895 3.67 0.00 41.35 3.55
3344 3877 1.227764 CACCATGCCTCCCATCTCG 60.228 63.158 0.00 0.00 29.71 4.04
3345 3878 1.383109 ACCATGCCTCCCATCTCGA 60.383 57.895 0.00 0.00 29.71 4.04
3346 3879 1.070445 CCATGCCTCCCATCTCGAC 59.930 63.158 0.00 0.00 29.71 4.20
3369 3902 1.704006 CGACGACGACGAATGATCATC 59.296 52.381 15.32 2.05 42.66 2.92
3387 3920 2.800881 TCGAAGATGGATGATGACCG 57.199 50.000 0.00 0.00 0.00 4.79
3596 4137 1.340017 CCCTCGTCCCACATCAATTGT 60.340 52.381 5.13 0.00 39.91 2.71
3607 4148 2.095768 ACATCAATTGTCGCTCAAACCG 60.096 45.455 5.13 0.00 39.62 4.44
3616 4157 3.123804 GTCGCTCAAACCGATGTATCAT 58.876 45.455 0.00 0.00 37.04 2.45
3620 4210 3.871006 GCTCAAACCGATGTATCATGACA 59.129 43.478 0.00 0.00 0.00 3.58
3631 4225 6.795593 CGATGTATCATGACAGATTTCAATGC 59.204 38.462 0.00 0.00 31.51 3.56
3632 4226 7.307811 CGATGTATCATGACAGATTTCAATGCT 60.308 37.037 0.00 0.00 31.51 3.79
3633 4227 7.255491 TGTATCATGACAGATTTCAATGCTC 57.745 36.000 0.00 0.00 0.00 4.26
3634 4228 6.824704 TGTATCATGACAGATTTCAATGCTCA 59.175 34.615 0.00 0.00 0.00 4.26
3686 4335 3.148412 CTGGTCACCATGAAATGTCACA 58.852 45.455 0.00 0.00 44.81 3.58
3722 4371 1.386748 CGTATAGCATTCCATCACGCG 59.613 52.381 3.53 3.53 0.00 6.01
3727 4376 0.882042 GCATTCCATCACGCGAGGAT 60.882 55.000 15.93 12.97 0.00 3.24
3731 4380 3.469008 TTCCATCACGCGAGGATTATT 57.531 42.857 15.93 0.00 0.00 1.40
3740 4389 2.797156 CGCGAGGATTATTCTTCACCAG 59.203 50.000 0.00 0.00 0.00 4.00
3742 4391 3.742640 GCGAGGATTATTCTTCACCAGCT 60.743 47.826 0.00 0.00 0.00 4.24
3743 4392 4.501571 GCGAGGATTATTCTTCACCAGCTA 60.502 45.833 0.00 0.00 0.00 3.32
3745 4394 5.221342 CGAGGATTATTCTTCACCAGCTAGT 60.221 44.000 0.00 0.00 0.00 2.57
3746 4395 5.923204 AGGATTATTCTTCACCAGCTAGTG 58.077 41.667 5.87 5.87 39.20 2.74
3747 4396 4.513318 GGATTATTCTTCACCAGCTAGTGC 59.487 45.833 7.48 0.00 37.68 4.40
3878 4527 4.332268 GGCAGATTCTCAACTGATCTTGAC 59.668 45.833 0.00 0.00 36.38 3.18
3880 4529 5.485620 CAGATTCTCAACTGATCTTGACCA 58.514 41.667 0.00 0.00 36.38 4.02
3911 4560 4.006319 GCAAAGAGAAGCAAGTGGAGTAT 58.994 43.478 0.00 0.00 0.00 2.12
3942 4591 6.808212 CCAAATGAAGCAACAGGTATACAAAG 59.192 38.462 5.01 0.00 0.00 2.77
3971 4620 8.623903 TGATGAAATATAAACTCAAGTGCCATC 58.376 33.333 0.00 0.00 0.00 3.51
3997 4646 7.438160 CCCTTAAGAAATTCACTTTTTCACCAC 59.562 37.037 3.36 0.00 35.90 4.16
4030 4679 7.054491 AGTTATTCTCAACAAGGCAAAACAT 57.946 32.000 0.00 0.00 0.00 2.71
4052 4702 1.396996 ACACAAGCTCACGACACAAAC 59.603 47.619 0.00 0.00 0.00 2.93
4057 4707 0.158096 GCTCACGACACAAACGTACG 59.842 55.000 15.01 15.01 42.07 3.67
4274 4925 0.803768 CAGTCTTCTGATCCACCGCG 60.804 60.000 0.00 0.00 43.76 6.46
4277 4928 1.215382 CTTCTGATCCACCGCGACA 59.785 57.895 8.23 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.665185 GTGGTCACTGGTGGTCGC 60.665 66.667 0.70 0.00 0.00 5.19
36 37 1.071471 CCTGTGGTCACTGGTGGTC 59.929 63.158 15.92 0.00 43.06 4.02
37 38 2.452064 CCCTGTGGTCACTGGTGGT 61.452 63.158 20.43 0.00 45.55 4.16
38 39 2.116983 CTCCCTGTGGTCACTGGTGG 62.117 65.000 20.43 11.73 45.55 4.61
40 41 0.833834 CTCTCCCTGTGGTCACTGGT 60.834 60.000 20.43 0.00 45.55 4.00
41 42 0.542938 TCTCTCCCTGTGGTCACTGG 60.543 60.000 16.85 16.85 46.26 4.00
43 44 1.566211 CATCTCTCCCTGTGGTCACT 58.434 55.000 2.66 0.00 0.00 3.41
44 45 0.539051 CCATCTCTCCCTGTGGTCAC 59.461 60.000 0.00 0.00 0.00 3.67
145 151 2.360350 CATGCAACCTGGAGCGGT 60.360 61.111 0.00 0.00 39.48 5.68
183 189 2.234414 CACCACCAGCCTATGCAATTTT 59.766 45.455 0.00 0.00 41.13 1.82
195 201 0.036010 ATGCACTAGACACCACCAGC 60.036 55.000 0.00 0.00 0.00 4.85
221 238 9.706691 CCTCTAAGTAATAAGAAACACTGAACA 57.293 33.333 0.00 0.00 0.00 3.18
237 254 6.121776 TCATTGCTTGTTCCCTCTAAGTAA 57.878 37.500 0.00 0.00 32.18 2.24
240 257 3.944015 CCTCATTGCTTGTTCCCTCTAAG 59.056 47.826 0.00 0.00 0.00 2.18
244 261 2.496899 TCCTCATTGCTTGTTCCCTC 57.503 50.000 0.00 0.00 0.00 4.30
282 318 6.311735 AGATACCACCAGCCTAAAAGAAAAA 58.688 36.000 0.00 0.00 0.00 1.94
285 321 5.724854 ACTAGATACCACCAGCCTAAAAGAA 59.275 40.000 0.00 0.00 0.00 2.52
286 322 5.128827 CACTAGATACCACCAGCCTAAAAGA 59.871 44.000 0.00 0.00 0.00 2.52
287 323 5.360591 CACTAGATACCACCAGCCTAAAAG 58.639 45.833 0.00 0.00 0.00 2.27
290 326 2.698797 GCACTAGATACCACCAGCCTAA 59.301 50.000 0.00 0.00 0.00 2.69
292 328 1.123928 GCACTAGATACCACCAGCCT 58.876 55.000 0.00 0.00 0.00 4.58
293 329 0.830648 TGCACTAGATACCACCAGCC 59.169 55.000 0.00 0.00 0.00 4.85
294 330 2.918712 ATGCACTAGATACCACCAGC 57.081 50.000 0.00 0.00 0.00 4.85
295 331 4.336433 CCAAAATGCACTAGATACCACCAG 59.664 45.833 0.00 0.00 0.00 4.00
296 332 4.263727 ACCAAAATGCACTAGATACCACCA 60.264 41.667 0.00 0.00 0.00 4.17
297 333 4.270008 ACCAAAATGCACTAGATACCACC 58.730 43.478 0.00 0.00 0.00 4.61
298 334 5.897377 AACCAAAATGCACTAGATACCAC 57.103 39.130 0.00 0.00 0.00 4.16
299 335 6.686630 CAAAACCAAAATGCACTAGATACCA 58.313 36.000 0.00 0.00 0.00 3.25
300 336 5.576774 GCAAAACCAAAATGCACTAGATACC 59.423 40.000 0.00 0.00 39.81 2.73
301 337 6.389906 AGCAAAACCAAAATGCACTAGATAC 58.610 36.000 0.00 0.00 42.45 2.24
302 338 6.588719 AGCAAAACCAAAATGCACTAGATA 57.411 33.333 0.00 0.00 42.45 1.98
303 339 5.473066 AGCAAAACCAAAATGCACTAGAT 57.527 34.783 0.00 0.00 42.45 1.98
304 340 4.935352 AGCAAAACCAAAATGCACTAGA 57.065 36.364 0.00 0.00 42.45 2.43
305 341 7.656707 AAATAGCAAAACCAAAATGCACTAG 57.343 32.000 0.00 0.00 42.45 2.57
306 342 9.547753 TTAAAATAGCAAAACCAAAATGCACTA 57.452 25.926 0.00 0.00 42.45 2.74
307 343 6.940831 AAAATAGCAAAACCAAAATGCACT 57.059 29.167 0.00 0.00 42.45 4.40
308 344 9.116054 CATTAAAATAGCAAAACCAAAATGCAC 57.884 29.630 0.00 0.00 42.45 4.57
309 345 8.295288 CCATTAAAATAGCAAAACCAAAATGCA 58.705 29.630 0.00 0.00 42.45 3.96
310 346 7.754475 CCCATTAAAATAGCAAAACCAAAATGC 59.246 33.333 0.00 0.00 40.34 3.56
311 347 9.007901 TCCCATTAAAATAGCAAAACCAAAATG 57.992 29.630 0.00 0.00 0.00 2.32
346 382 6.757010 AGTGGCGACTTAAATGTAGATAGTTG 59.243 38.462 0.00 0.00 0.00 3.16
366 402 4.035441 CGTCTTAGACTCCTAGTTAGTGGC 59.965 50.000 10.83 0.00 0.00 5.01
377 413 2.818432 TCACTTGTCCGTCTTAGACTCC 59.182 50.000 10.83 0.00 35.21 3.85
378 414 4.500603 TTCACTTGTCCGTCTTAGACTC 57.499 45.455 10.83 2.07 35.21 3.36
379 415 4.098960 TGTTTCACTTGTCCGTCTTAGACT 59.901 41.667 10.83 0.00 35.21 3.24
380 416 4.365723 TGTTTCACTTGTCCGTCTTAGAC 58.634 43.478 1.64 1.64 34.72 2.59
381 417 4.659111 TGTTTCACTTGTCCGTCTTAGA 57.341 40.909 0.00 0.00 0.00 2.10
382 418 5.047847 TCTTGTTTCACTTGTCCGTCTTAG 58.952 41.667 0.00 0.00 0.00 2.18
383 419 5.013568 TCTTGTTTCACTTGTCCGTCTTA 57.986 39.130 0.00 0.00 0.00 2.10
384 420 3.869065 TCTTGTTTCACTTGTCCGTCTT 58.131 40.909 0.00 0.00 0.00 3.01
396 432 6.049149 GTCCGATCAATATCCTCTTGTTTCA 58.951 40.000 0.00 0.00 0.00 2.69
399 435 4.341235 TCGTCCGATCAATATCCTCTTGTT 59.659 41.667 0.00 0.00 0.00 2.83
406 442 5.950883 TCAATAGTCGTCCGATCAATATCC 58.049 41.667 0.00 0.00 0.00 2.59
426 462 8.958119 AATAGTTATTTCTTAGGCGACATCAA 57.042 30.769 0.00 0.00 0.00 2.57
435 471 7.132863 GGCTCGCAAAATAGTTATTTCTTAGG 58.867 38.462 0.00 0.00 35.00 2.69
437 473 7.618502 TGGCTCGCAAAATAGTTATTTCTTA 57.381 32.000 0.00 0.00 35.00 2.10
440 484 4.735338 GCTGGCTCGCAAAATAGTTATTTC 59.265 41.667 0.00 0.00 35.00 2.17
443 487 2.618709 GGCTGGCTCGCAAAATAGTTAT 59.381 45.455 0.00 0.00 0.00 1.89
447 491 1.953559 TAGGCTGGCTCGCAAAATAG 58.046 50.000 7.13 0.00 0.00 1.73
456 500 5.011125 TGAGTGACTATATTTAGGCTGGCTC 59.989 44.000 7.13 4.03 34.23 4.70
470 514 9.436957 AACGAAATAAAATGAGTGAGTGACTAT 57.563 29.630 0.00 0.00 33.83 2.12
471 515 8.827177 AACGAAATAAAATGAGTGAGTGACTA 57.173 30.769 0.00 0.00 33.83 2.59
492 536 9.710979 GTTTCAATATCGATGGAAAAATAACGA 57.289 29.630 17.60 0.00 36.85 3.85
493 537 9.497030 TGTTTCAATATCGATGGAAAAATAACG 57.503 29.630 17.60 0.00 36.85 3.18
579 656 1.783071 TGGTTTGGGTTCCTTTGACC 58.217 50.000 0.00 0.00 36.41 4.02
592 669 3.191371 GGGTGAACTCAAGCTATGGTTTG 59.809 47.826 0.00 0.00 35.44 2.93
597 674 3.942829 TGAAGGGTGAACTCAAGCTATG 58.057 45.455 0.00 0.00 0.00 2.23
613 690 2.939103 CTCACCCGATTAGCTTTGAAGG 59.061 50.000 0.00 0.00 0.00 3.46
626 703 1.336440 CAATGCAAACAACTCACCCGA 59.664 47.619 0.00 0.00 0.00 5.14
627 704 1.066908 ACAATGCAAACAACTCACCCG 59.933 47.619 0.00 0.00 0.00 5.28
630 707 2.384382 CGGACAATGCAAACAACTCAC 58.616 47.619 0.00 0.00 0.00 3.51
645 722 2.280797 GTTCACTGCAGCCGGACA 60.281 61.111 15.27 0.00 0.00 4.02
650 727 2.490903 AGAATCATTGTTCACTGCAGCC 59.509 45.455 15.27 0.00 0.00 4.85
652 729 6.492007 AACTAGAATCATTGTTCACTGCAG 57.508 37.500 13.48 13.48 0.00 4.41
660 737 5.774690 TGGCTTGGAAACTAGAATCATTGTT 59.225 36.000 0.00 0.00 34.95 2.83
663 740 7.038799 ACAAATGGCTTGGAAACTAGAATCATT 60.039 33.333 0.00 0.00 39.56 2.57
665 742 5.774690 ACAAATGGCTTGGAAACTAGAATCA 59.225 36.000 0.00 0.00 39.56 2.57
675 752 4.083565 GGGTTACTACAAATGGCTTGGAA 58.916 43.478 0.00 0.00 39.56 3.53
678 755 3.374058 CGAGGGTTACTACAAATGGCTTG 59.626 47.826 0.00 0.00 41.19 4.01
699 789 0.105039 GTGGGCTCCTCAAGGATACG 59.895 60.000 0.00 0.00 44.46 3.06
735 825 1.765904 TGCAAGCGATATCCCCTGTTA 59.234 47.619 0.00 0.00 0.00 2.41
736 826 0.546122 TGCAAGCGATATCCCCTGTT 59.454 50.000 0.00 0.00 0.00 3.16
737 827 0.546122 TTGCAAGCGATATCCCCTGT 59.454 50.000 0.00 0.00 0.00 4.00
739 829 2.158623 TGAATTGCAAGCGATATCCCCT 60.159 45.455 4.94 0.00 0.00 4.79
740 830 2.227388 CTGAATTGCAAGCGATATCCCC 59.773 50.000 4.94 0.00 0.00 4.81
741 831 3.141398 TCTGAATTGCAAGCGATATCCC 58.859 45.455 4.94 0.00 0.00 3.85
742 832 4.512944 TCTTCTGAATTGCAAGCGATATCC 59.487 41.667 4.94 0.00 0.00 2.59
748 841 4.919168 TCAAAATCTTCTGAATTGCAAGCG 59.081 37.500 4.94 0.00 0.00 4.68
759 852 7.382110 TCTTACTCTCCTGTCAAAATCTTCTG 58.618 38.462 0.00 0.00 0.00 3.02
763 856 6.495181 TCACTCTTACTCTCCTGTCAAAATCT 59.505 38.462 0.00 0.00 0.00 2.40
772 865 6.714810 AGTGCTATATCACTCTTACTCTCCTG 59.285 42.308 3.35 0.00 43.28 3.86
795 888 1.677576 CCATGCAACACTGAACACAGT 59.322 47.619 0.00 0.00 44.39 3.55
796 889 1.948834 TCCATGCAACACTGAACACAG 59.051 47.619 0.00 0.00 37.63 3.66
798 891 4.216257 AGTTATCCATGCAACACTGAACAC 59.784 41.667 0.00 0.00 0.00 3.32
799 892 4.397420 AGTTATCCATGCAACACTGAACA 58.603 39.130 0.00 0.00 0.00 3.18
800 893 4.697352 AGAGTTATCCATGCAACACTGAAC 59.303 41.667 0.00 0.00 0.00 3.18
801 894 4.910195 AGAGTTATCCATGCAACACTGAA 58.090 39.130 0.00 0.00 0.00 3.02
802 895 4.558226 AGAGTTATCCATGCAACACTGA 57.442 40.909 0.00 0.00 0.00 3.41
803 896 4.572389 GGTAGAGTTATCCATGCAACACTG 59.428 45.833 0.00 0.00 30.00 3.66
804 897 4.225042 TGGTAGAGTTATCCATGCAACACT 59.775 41.667 0.00 7.68 31.77 3.55
829 923 4.637534 CCATGACAATTAACTCCTCCACTG 59.362 45.833 0.00 0.00 0.00 3.66
879 974 6.192970 TGGGGAAAATGCAAATCCTTTTTA 57.807 33.333 13.51 0.00 33.61 1.52
881 976 4.720775 TGGGGAAAATGCAAATCCTTTT 57.279 36.364 13.51 5.40 33.61 2.27
887 982 4.914177 AGTTGATGGGGAAAATGCAAAT 57.086 36.364 0.00 0.00 0.00 2.32
893 988 5.648092 CGACTTCTTAGTTGATGGGGAAAAT 59.352 40.000 0.00 0.00 37.92 1.82
899 994 3.125316 GCAACGACTTCTTAGTTGATGGG 59.875 47.826 11.15 0.00 45.66 4.00
910 1005 3.163467 AGTTACCTAGGCAACGACTTCT 58.837 45.455 17.48 0.00 46.39 2.85
916 1011 4.978083 TTCTCTAGTTACCTAGGCAACG 57.022 45.455 17.48 6.37 40.98 4.10
926 1021 6.946229 TCTGTCGCATTTTTCTCTAGTTAC 57.054 37.500 0.00 0.00 0.00 2.50
930 1025 7.132213 TGTTTTTCTGTCGCATTTTTCTCTAG 58.868 34.615 0.00 0.00 0.00 2.43
942 1037 3.247563 TCGTTCATGTTTTTCTGTCGC 57.752 42.857 0.00 0.00 0.00 5.19
944 1039 8.985694 CGTTTATATCGTTCATGTTTTTCTGTC 58.014 33.333 0.00 0.00 0.00 3.51
945 1040 7.480542 GCGTTTATATCGTTCATGTTTTTCTGT 59.519 33.333 0.00 0.00 0.00 3.41
946 1041 7.480229 TGCGTTTATATCGTTCATGTTTTTCTG 59.520 33.333 0.00 0.00 0.00 3.02
948 1043 7.253190 GGTGCGTTTATATCGTTCATGTTTTTC 60.253 37.037 0.00 0.00 0.00 2.29
952 1047 4.632251 TGGTGCGTTTATATCGTTCATGTT 59.368 37.500 0.00 0.00 0.00 2.71
956 1051 3.852286 AGTGGTGCGTTTATATCGTTCA 58.148 40.909 0.00 0.00 0.00 3.18
961 1056 5.221303 TGGTAGGTAGTGGTGCGTTTATATC 60.221 44.000 0.00 0.00 0.00 1.63
965 1060 2.246469 TGGTAGGTAGTGGTGCGTTTA 58.754 47.619 0.00 0.00 0.00 2.01
969 1064 0.606604 ACTTGGTAGGTAGTGGTGCG 59.393 55.000 0.00 0.00 0.00 5.34
994 1090 5.422331 TGAAATTTTGGTTGGTGGTGTTCTA 59.578 36.000 0.00 0.00 0.00 2.10
1003 1099 6.000840 ACTTTGTTGTGAAATTTTGGTTGGT 58.999 32.000 0.00 0.00 0.00 3.67
1005 1101 7.960195 GGTTACTTTGTTGTGAAATTTTGGTTG 59.040 33.333 0.00 0.00 0.00 3.77
1006 1102 7.880713 AGGTTACTTTGTTGTGAAATTTTGGTT 59.119 29.630 0.00 0.00 0.00 3.67
1007 1103 7.390823 AGGTTACTTTGTTGTGAAATTTTGGT 58.609 30.769 0.00 0.00 0.00 3.67
1020 1116 7.769044 AGCGACATATATTGAGGTTACTTTGTT 59.231 33.333 0.00 0.00 0.00 2.83
1036 1132 3.568430 ACGAATCACCTCAGCGACATATA 59.432 43.478 0.00 0.00 0.00 0.86
1042 1138 1.170442 TACACGAATCACCTCAGCGA 58.830 50.000 0.00 0.00 0.00 4.93
1044 1140 3.521560 TCAATACACGAATCACCTCAGC 58.478 45.455 0.00 0.00 0.00 4.26
1045 1141 6.128715 GCATATCAATACACGAATCACCTCAG 60.129 42.308 0.00 0.00 0.00 3.35
1056 1152 2.548057 GGGTGGTGCATATCAATACACG 59.452 50.000 0.00 0.00 31.10 4.49
1059 1155 4.085357 TCAGGGTGGTGCATATCAATAC 57.915 45.455 0.00 0.00 0.00 1.89
1063 1159 2.126057 TGATCAGGGTGGTGCATATCA 58.874 47.619 0.00 0.00 0.00 2.15
1075 1171 1.325355 GGCAATGGTGATGATCAGGG 58.675 55.000 0.09 0.00 0.00 4.45
1077 1173 1.325355 GGGGCAATGGTGATGATCAG 58.675 55.000 0.09 0.00 0.00 2.90
1078 1174 0.466007 CGGGGCAATGGTGATGATCA 60.466 55.000 0.00 0.00 0.00 2.92
1079 1175 0.466189 ACGGGGCAATGGTGATGATC 60.466 55.000 0.00 0.00 0.00 2.92
1092 1188 4.642542 GCGATCGACCTACGGGGC 62.643 72.222 21.57 0.00 42.82 5.80
1097 1193 3.311871 TGAAGTAAGAGCGATCGACCTAC 59.688 47.826 21.57 14.83 0.00 3.18
1098 1194 3.311871 GTGAAGTAAGAGCGATCGACCTA 59.688 47.826 21.57 3.18 0.00 3.08
1099 1195 2.097791 GTGAAGTAAGAGCGATCGACCT 59.902 50.000 21.57 11.62 0.00 3.85
1101 1197 2.159421 TGGTGAAGTAAGAGCGATCGAC 60.159 50.000 21.57 11.92 0.00 4.20
1108 1204 2.750948 TGTTCGTGGTGAAGTAAGAGC 58.249 47.619 0.00 0.00 37.23 4.09
1123 1219 7.807433 TCATTGAAATGTTCCATAGTTTGTTCG 59.193 33.333 3.10 0.00 37.65 3.95
1127 1223 7.410728 GCGTTCATTGAAATGTTCCATAGTTTG 60.411 37.037 0.00 0.00 37.65 2.93
1134 1230 2.351253 CGGCGTTCATTGAAATGTTCCA 60.351 45.455 0.00 0.00 37.65 3.53
1135 1231 2.250188 CGGCGTTCATTGAAATGTTCC 58.750 47.619 0.00 0.00 37.65 3.62
1143 1239 0.170116 GGATTTGCGGCGTTCATTGA 59.830 50.000 9.37 0.00 0.00 2.57
1147 1243 1.505807 CATGGATTTGCGGCGTTCA 59.494 52.632 9.37 0.00 0.00 3.18
1151 1247 4.573950 GGGCATGGATTTGCGGCG 62.574 66.667 0.51 0.51 43.71 6.46
1155 1251 2.922740 ATCAATGGGCATGGATTTGC 57.077 45.000 0.00 0.00 42.01 3.68
1167 1264 6.522625 TGGTTGGTTGTATTGTATCAATGG 57.477 37.500 5.40 0.00 0.00 3.16
1170 1267 6.717084 TGTGATGGTTGGTTGTATTGTATCAA 59.283 34.615 0.00 0.00 0.00 2.57
1176 1273 4.438608 CCGATGTGATGGTTGGTTGTATTG 60.439 45.833 0.00 0.00 0.00 1.90
1177 1274 3.694072 CCGATGTGATGGTTGGTTGTATT 59.306 43.478 0.00 0.00 0.00 1.89
1178 1275 3.278574 CCGATGTGATGGTTGGTTGTAT 58.721 45.455 0.00 0.00 0.00 2.29
1184 1281 2.472059 CCGCCGATGTGATGGTTGG 61.472 63.158 0.00 0.00 0.00 3.77
1206 1303 5.634439 TCAAATCATCAAAATTGGAGTTGCG 59.366 36.000 0.00 0.00 35.86 4.85
1210 1307 7.729116 ACAAGTCAAATCATCAAAATTGGAGT 58.271 30.769 0.00 0.00 0.00 3.85
1220 1317 8.816144 GTTTTGCTTTTACAAGTCAAATCATCA 58.184 29.630 10.12 0.00 36.63 3.07
1221 1318 8.816144 TGTTTTGCTTTTACAAGTCAAATCATC 58.184 29.630 12.83 7.01 36.63 2.92
1236 1333 2.284952 GCTTGTGCGATGTTTTGCTTTT 59.715 40.909 0.00 0.00 33.01 2.27
1238 1335 1.490621 GCTTGTGCGATGTTTTGCTT 58.509 45.000 0.00 0.00 33.01 3.91
1239 1336 0.318955 GGCTTGTGCGATGTTTTGCT 60.319 50.000 0.00 0.00 40.82 3.91
1240 1337 0.318955 AGGCTTGTGCGATGTTTTGC 60.319 50.000 0.00 0.00 40.82 3.68
1241 1338 1.788308 CAAGGCTTGTGCGATGTTTTG 59.212 47.619 19.07 0.00 40.82 2.44
1242 1339 1.408702 ACAAGGCTTGTGCGATGTTTT 59.591 42.857 30.71 2.88 43.48 2.43
1243 1340 1.032014 ACAAGGCTTGTGCGATGTTT 58.968 45.000 30.71 3.66 43.48 2.83
1258 1529 2.868583 GTCATGGGATGATCGTCACAAG 59.131 50.000 23.29 18.88 42.04 3.16
1265 1536 0.601046 CCACCGTCATGGGATGATCG 60.601 60.000 0.00 0.00 44.64 3.69
1267 1538 0.918983 AACCACCGTCATGGGATGAT 59.081 50.000 0.00 0.00 44.81 2.45
1268 1539 0.035534 CAACCACCGTCATGGGATGA 60.036 55.000 0.00 0.00 44.81 2.92
1281 1552 4.533296 GTGGGTAGCACAATGCAACCAC 62.533 54.545 18.24 18.24 46.51 4.16
1297 1568 1.803453 ATGAGGTGGCATTGGTGGGT 61.803 55.000 0.00 0.00 0.00 4.51
1299 1570 0.323633 TCATGAGGTGGCATTGGTGG 60.324 55.000 0.00 0.00 0.00 4.61
1303 1574 2.097036 ACACATCATGAGGTGGCATTG 58.903 47.619 35.68 16.54 46.27 2.82
1305 1576 1.005097 ACACACATCATGAGGTGGCAT 59.995 47.619 35.68 21.78 46.27 4.40
1315 1586 2.654749 ACGATGACGACACACATCAT 57.345 45.000 0.00 0.00 41.75 2.45
1318 1589 1.671850 GGGAACGATGACGACACACAT 60.672 52.381 0.00 0.00 42.66 3.21
1319 1590 0.319211 GGGAACGATGACGACACACA 60.319 55.000 0.00 0.00 42.66 3.72
1334 1605 4.794648 CCAAGATGCGGCGGGGAA 62.795 66.667 9.78 0.00 0.00 3.97
1340 1611 0.179129 CCAATTCACCAAGATGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
1343 1614 2.927871 GCACACCAATTCACCAAGATGC 60.928 50.000 0.00 0.00 0.00 3.91
1359 1663 4.692625 ACATGACTAGATGTTCTTGCACAC 59.307 41.667 0.00 0.00 32.38 3.82
1372 1676 3.764434 GGTCTCCTGACAACATGACTAGA 59.236 47.826 0.00 0.00 44.61 2.43
1377 1681 2.547855 CGTTGGTCTCCTGACAACATGA 60.548 50.000 0.00 0.00 44.61 3.07
1382 1686 1.334160 TAGCGTTGGTCTCCTGACAA 58.666 50.000 0.00 0.00 44.61 3.18
1410 1714 1.037493 ACAGTACCAACAGTGCTCGA 58.963 50.000 0.00 0.00 39.74 4.04
1412 1716 2.737252 GCTTACAGTACCAACAGTGCTC 59.263 50.000 0.00 0.00 39.74 4.26
1413 1717 2.368875 AGCTTACAGTACCAACAGTGCT 59.631 45.455 0.00 0.00 42.94 4.40
1417 1721 4.258702 ACAGAGCTTACAGTACCAACAG 57.741 45.455 0.00 0.00 0.00 3.16
1418 1722 4.682778 AACAGAGCTTACAGTACCAACA 57.317 40.909 0.00 0.00 0.00 3.33
1423 1727 3.057734 ACGCAAACAGAGCTTACAGTAC 58.942 45.455 0.00 0.00 0.00 2.73
1473 1782 5.104277 TCACCACTCCTACCTTTCTTTTCAA 60.104 40.000 0.00 0.00 0.00 2.69
1474 1783 4.410883 TCACCACTCCTACCTTTCTTTTCA 59.589 41.667 0.00 0.00 0.00 2.69
1475 1784 4.755629 GTCACCACTCCTACCTTTCTTTTC 59.244 45.833 0.00 0.00 0.00 2.29
1476 1785 4.165372 TGTCACCACTCCTACCTTTCTTTT 59.835 41.667 0.00 0.00 0.00 2.27
1480 1789 3.071167 ACTTGTCACCACTCCTACCTTTC 59.929 47.826 0.00 0.00 0.00 2.62
1484 1827 3.071167 AGAAACTTGTCACCACTCCTACC 59.929 47.826 0.00 0.00 0.00 3.18
1503 1846 5.938125 GCACCACTCCTTCACTAAAATAGAA 59.062 40.000 0.00 0.00 0.00 2.10
1504 1847 5.488341 GCACCACTCCTTCACTAAAATAGA 58.512 41.667 0.00 0.00 0.00 1.98
1505 1848 4.330074 CGCACCACTCCTTCACTAAAATAG 59.670 45.833 0.00 0.00 0.00 1.73
1506 1849 4.020928 TCGCACCACTCCTTCACTAAAATA 60.021 41.667 0.00 0.00 0.00 1.40
1507 1850 3.074412 CGCACCACTCCTTCACTAAAAT 58.926 45.455 0.00 0.00 0.00 1.82
1508 1851 2.103432 TCGCACCACTCCTTCACTAAAA 59.897 45.455 0.00 0.00 0.00 1.52
1509 1852 1.689813 TCGCACCACTCCTTCACTAAA 59.310 47.619 0.00 0.00 0.00 1.85
1510 1853 1.272490 CTCGCACCACTCCTTCACTAA 59.728 52.381 0.00 0.00 0.00 2.24
1511 1854 0.888619 CTCGCACCACTCCTTCACTA 59.111 55.000 0.00 0.00 0.00 2.74
1512 1855 1.115930 ACTCGCACCACTCCTTCACT 61.116 55.000 0.00 0.00 0.00 3.41
1513 1856 0.249911 AACTCGCACCACTCCTTCAC 60.250 55.000 0.00 0.00 0.00 3.18
1514 1857 0.468226 AAACTCGCACCACTCCTTCA 59.532 50.000 0.00 0.00 0.00 3.02
1515 1858 1.531578 GAAAACTCGCACCACTCCTTC 59.468 52.381 0.00 0.00 0.00 3.46
1516 1859 1.141053 AGAAAACTCGCACCACTCCTT 59.859 47.619 0.00 0.00 0.00 3.36
1517 1860 0.759346 AGAAAACTCGCACCACTCCT 59.241 50.000 0.00 0.00 0.00 3.69
1518 1861 1.594331 AAGAAAACTCGCACCACTCC 58.406 50.000 0.00 0.00 0.00 3.85
1519 1862 3.692791 AAAAGAAAACTCGCACCACTC 57.307 42.857 0.00 0.00 0.00 3.51
1520 1863 4.272748 GTCTAAAAGAAAACTCGCACCACT 59.727 41.667 0.00 0.00 0.00 4.00
1521 1864 4.034742 TGTCTAAAAGAAAACTCGCACCAC 59.965 41.667 0.00 0.00 0.00 4.16
1522 1865 4.193090 TGTCTAAAAGAAAACTCGCACCA 58.807 39.130 0.00 0.00 0.00 4.17
1523 1866 4.806342 TGTCTAAAAGAAAACTCGCACC 57.194 40.909 0.00 0.00 0.00 5.01
1524 1867 5.625311 CCATTGTCTAAAAGAAAACTCGCAC 59.375 40.000 0.00 0.00 0.00 5.34
1525 1868 5.529430 TCCATTGTCTAAAAGAAAACTCGCA 59.471 36.000 0.00 0.00 0.00 5.10
1526 1869 5.997385 TCCATTGTCTAAAAGAAAACTCGC 58.003 37.500 0.00 0.00 0.00 5.03
1527 1870 7.072030 CACTCCATTGTCTAAAAGAAAACTCG 58.928 38.462 0.00 0.00 0.00 4.18
1528 1871 7.013369 ACCACTCCATTGTCTAAAAGAAAACTC 59.987 37.037 0.00 0.00 0.00 3.01
1529 1872 6.833933 ACCACTCCATTGTCTAAAAGAAAACT 59.166 34.615 0.00 0.00 0.00 2.66
1530 1873 6.918022 CACCACTCCATTGTCTAAAAGAAAAC 59.082 38.462 0.00 0.00 0.00 2.43
1531 1874 6.460953 GCACCACTCCATTGTCTAAAAGAAAA 60.461 38.462 0.00 0.00 0.00 2.29
1532 1875 5.009610 GCACCACTCCATTGTCTAAAAGAAA 59.990 40.000 0.00 0.00 0.00 2.52
1533 1876 4.518970 GCACCACTCCATTGTCTAAAAGAA 59.481 41.667 0.00 0.00 0.00 2.52
1534 1877 4.072131 GCACCACTCCATTGTCTAAAAGA 58.928 43.478 0.00 0.00 0.00 2.52
1535 1878 3.820467 TGCACCACTCCATTGTCTAAAAG 59.180 43.478 0.00 0.00 0.00 2.27
1536 1879 3.820467 CTGCACCACTCCATTGTCTAAAA 59.180 43.478 0.00 0.00 0.00 1.52
1537 1880 3.411446 CTGCACCACTCCATTGTCTAAA 58.589 45.455 0.00 0.00 0.00 1.85
1538 1881 2.290260 CCTGCACCACTCCATTGTCTAA 60.290 50.000 0.00 0.00 0.00 2.10
1539 1882 1.278985 CCTGCACCACTCCATTGTCTA 59.721 52.381 0.00 0.00 0.00 2.59
1540 1883 0.037303 CCTGCACCACTCCATTGTCT 59.963 55.000 0.00 0.00 0.00 3.41
1541 1884 0.962356 CCCTGCACCACTCCATTGTC 60.962 60.000 0.00 0.00 0.00 3.18
1542 1885 1.075482 CCCTGCACCACTCCATTGT 59.925 57.895 0.00 0.00 0.00 2.71
1543 1886 0.540365 AACCCTGCACCACTCCATTG 60.540 55.000 0.00 0.00 0.00 2.82
1544 1887 0.188342 AAACCCTGCACCACTCCATT 59.812 50.000 0.00 0.00 0.00 3.16
1545 1888 0.188342 AAAACCCTGCACCACTCCAT 59.812 50.000 0.00 0.00 0.00 3.41
1546 1889 0.032615 AAAAACCCTGCACCACTCCA 60.033 50.000 0.00 0.00 0.00 3.86
1547 1890 2.820845 AAAAACCCTGCACCACTCC 58.179 52.632 0.00 0.00 0.00 3.85
1565 1908 9.408648 ACTCCTATTGTCTCAAAAAGAAAAGAA 57.591 29.630 0.00 0.00 34.63 2.52
1566 1909 8.840321 CACTCCTATTGTCTCAAAAAGAAAAGA 58.160 33.333 0.00 0.00 34.63 2.52
1567 1910 8.078596 CCACTCCTATTGTCTCAAAAAGAAAAG 58.921 37.037 0.00 0.00 34.63 2.27
1568 1911 7.559897 ACCACTCCTATTGTCTCAAAAAGAAAA 59.440 33.333 0.00 0.00 35.64 2.29
1569 1912 7.013274 CACCACTCCTATTGTCTCAAAAAGAAA 59.987 37.037 0.00 0.00 35.21 2.52
1570 1913 6.486657 CACCACTCCTATTGTCTCAAAAAGAA 59.513 38.462 0.00 0.00 35.21 2.52
1571 1914 5.997746 CACCACTCCTATTGTCTCAAAAAGA 59.002 40.000 0.00 0.00 0.00 2.52
1572 1915 5.765182 ACACCACTCCTATTGTCTCAAAAAG 59.235 40.000 0.00 0.00 0.00 2.27
1573 1916 5.690865 ACACCACTCCTATTGTCTCAAAAA 58.309 37.500 0.00 0.00 0.00 1.94
1574 1917 5.304686 ACACCACTCCTATTGTCTCAAAA 57.695 39.130 0.00 0.00 0.00 2.44
1575 1918 4.974645 ACACCACTCCTATTGTCTCAAA 57.025 40.909 0.00 0.00 0.00 2.69
1576 1919 4.466370 CCTACACCACTCCTATTGTCTCAA 59.534 45.833 0.00 0.00 0.00 3.02
1577 1920 4.023980 CCTACACCACTCCTATTGTCTCA 58.976 47.826 0.00 0.00 0.00 3.27
1578 1921 4.024670 ACCTACACCACTCCTATTGTCTC 58.975 47.826 0.00 0.00 0.00 3.36
1579 1922 3.769844 CACCTACACCACTCCTATTGTCT 59.230 47.826 0.00 0.00 0.00 3.41
1580 1923 3.767673 TCACCTACACCACTCCTATTGTC 59.232 47.826 0.00 0.00 0.00 3.18
1581 1924 3.786553 TCACCTACACCACTCCTATTGT 58.213 45.455 0.00 0.00 0.00 2.71
1582 1925 4.819105 TTCACCTACACCACTCCTATTG 57.181 45.455 0.00 0.00 0.00 1.90
1583 1926 5.836024 TTTTCACCTACACCACTCCTATT 57.164 39.130 0.00 0.00 0.00 1.73
1584 1927 5.546499 TCTTTTTCACCTACACCACTCCTAT 59.454 40.000 0.00 0.00 0.00 2.57
1585 1928 4.903049 TCTTTTTCACCTACACCACTCCTA 59.097 41.667 0.00 0.00 0.00 2.94
1586 1929 3.714798 TCTTTTTCACCTACACCACTCCT 59.285 43.478 0.00 0.00 0.00 3.69
1587 1930 4.081322 TCTTTTTCACCTACACCACTCC 57.919 45.455 0.00 0.00 0.00 3.85
1588 1931 5.875359 CCTATCTTTTTCACCTACACCACTC 59.125 44.000 0.00 0.00 0.00 3.51
1589 1932 5.546499 TCCTATCTTTTTCACCTACACCACT 59.454 40.000 0.00 0.00 0.00 4.00
1590 1933 5.801380 TCCTATCTTTTTCACCTACACCAC 58.199 41.667 0.00 0.00 0.00 4.16
1591 1934 6.443849 AGATCCTATCTTTTTCACCTACACCA 59.556 38.462 0.00 0.00 35.76 4.17
1592 1935 6.763610 CAGATCCTATCTTTTTCACCTACACC 59.236 42.308 0.00 0.00 37.58 4.16
1593 1936 7.278868 CACAGATCCTATCTTTTTCACCTACAC 59.721 40.741 0.00 0.00 37.58 2.90
1594 1937 7.331026 CACAGATCCTATCTTTTTCACCTACA 58.669 38.462 0.00 0.00 37.58 2.74
1595 1938 6.763610 CCACAGATCCTATCTTTTTCACCTAC 59.236 42.308 0.00 0.00 37.58 3.18
1596 1939 6.632672 GCCACAGATCCTATCTTTTTCACCTA 60.633 42.308 0.00 0.00 37.58 3.08
1597 1940 5.749462 CCACAGATCCTATCTTTTTCACCT 58.251 41.667 0.00 0.00 37.58 4.00
1598 1941 4.336713 GCCACAGATCCTATCTTTTTCACC 59.663 45.833 0.00 0.00 37.58 4.02
1599 1942 4.943705 TGCCACAGATCCTATCTTTTTCAC 59.056 41.667 0.00 0.00 37.58 3.18
1600 1943 5.178096 TGCCACAGATCCTATCTTTTTCA 57.822 39.130 0.00 0.00 37.58 2.69
1615 1960 2.159014 CCCATCCATTCATTTGCCACAG 60.159 50.000 0.00 0.00 0.00 3.66
1616 1961 1.832366 CCCATCCATTCATTTGCCACA 59.168 47.619 0.00 0.00 0.00 4.17
1623 1968 3.983410 AGTACTAGGCCCATCCATTCATT 59.017 43.478 0.00 0.00 37.29 2.57
1624 1969 3.328931 CAGTACTAGGCCCATCCATTCAT 59.671 47.826 0.00 0.00 37.29 2.57
1631 1976 6.935208 CCTAAAATTACAGTACTAGGCCCATC 59.065 42.308 0.00 0.00 0.00 3.51
1658 2046 7.309990 GGCCCAAATACTATTATTCATGCATGT 60.310 37.037 25.43 10.70 0.00 3.21
1663 2051 7.040755 TCGTTGGCCCAAATACTATTATTCATG 60.041 37.037 0.00 0.00 0.00 3.07
1697 2085 2.360230 TCTTAGGCCCACCCCTAAAAA 58.640 47.619 0.00 0.00 44.54 1.94
1699 2087 2.296943 ATCTTAGGCCCACCCCTAAA 57.703 50.000 0.00 0.00 44.54 1.85
1700 2088 2.296943 AATCTTAGGCCCACCCCTAA 57.703 50.000 0.00 1.20 43.39 2.69
1701 2089 2.697967 GTAATCTTAGGCCCACCCCTA 58.302 52.381 0.00 0.00 36.41 3.53
1702 2090 1.519498 GTAATCTTAGGCCCACCCCT 58.481 55.000 0.00 0.00 39.05 4.79
1703 2091 0.477204 GGTAATCTTAGGCCCACCCC 59.523 60.000 0.00 0.00 36.11 4.95
1704 2092 1.519498 AGGTAATCTTAGGCCCACCC 58.481 55.000 0.00 0.00 36.11 4.61
1705 2093 3.315596 ACTAGGTAATCTTAGGCCCACC 58.684 50.000 0.00 0.00 0.00 4.61
1706 2094 3.965347 TGACTAGGTAATCTTAGGCCCAC 59.035 47.826 0.00 0.00 31.25 4.61
1707 2095 3.965347 GTGACTAGGTAATCTTAGGCCCA 59.035 47.826 0.00 0.00 31.25 5.36
1708 2096 3.965347 TGTGACTAGGTAATCTTAGGCCC 59.035 47.826 0.00 0.00 31.25 5.80
1709 2097 5.105064 TGTTGTGACTAGGTAATCTTAGGCC 60.105 44.000 0.00 0.00 31.25 5.19
1710 2098 5.811100 GTGTTGTGACTAGGTAATCTTAGGC 59.189 44.000 0.00 0.00 32.68 3.93
1711 2099 6.070995 TGGTGTTGTGACTAGGTAATCTTAGG 60.071 42.308 0.00 0.00 0.00 2.69
1712 2100 6.931838 TGGTGTTGTGACTAGGTAATCTTAG 58.068 40.000 0.00 0.00 0.00 2.18
1713 2101 6.921486 TGGTGTTGTGACTAGGTAATCTTA 57.079 37.500 0.00 0.00 0.00 2.10
1715 2103 5.104900 GGATGGTGTTGTGACTAGGTAATCT 60.105 44.000 0.00 0.00 0.00 2.40
1716 2104 5.104900 AGGATGGTGTTGTGACTAGGTAATC 60.105 44.000 0.00 0.00 0.00 1.75
1717 2105 4.783227 AGGATGGTGTTGTGACTAGGTAAT 59.217 41.667 0.00 0.00 0.00 1.89
1718 2106 4.020573 CAGGATGGTGTTGTGACTAGGTAA 60.021 45.833 0.00 0.00 0.00 2.85
1719 2107 3.513912 CAGGATGGTGTTGTGACTAGGTA 59.486 47.826 0.00 0.00 0.00 3.08
1720 2108 2.303022 CAGGATGGTGTTGTGACTAGGT 59.697 50.000 0.00 0.00 0.00 3.08
1736 2124 1.840650 CCATCTCGGAGCCCAGGAT 60.841 63.158 0.00 0.00 36.56 3.24
1737 2125 2.444706 CCATCTCGGAGCCCAGGA 60.445 66.667 0.00 0.00 36.56 3.86
1738 2126 3.554342 CCCATCTCGGAGCCCAGG 61.554 72.222 0.00 0.00 36.56 4.45
1739 2127 4.247380 GCCCATCTCGGAGCCCAG 62.247 72.222 0.00 0.00 36.56 4.45
1742 2130 2.524394 TAGGCCCATCTCGGAGCC 60.524 66.667 0.00 0.00 46.30 4.70
1743 2131 3.055580 CTAGGCCCATCTCGGAGC 58.944 66.667 0.00 0.00 36.56 4.70
1744 2132 0.251386 TAGCTAGGCCCATCTCGGAG 60.251 60.000 0.00 0.00 36.56 4.63
1745 2133 0.187606 TTAGCTAGGCCCATCTCGGA 59.812 55.000 0.00 0.00 36.56 4.55
1746 2134 0.605589 CTTAGCTAGGCCCATCTCGG 59.394 60.000 0.00 0.00 0.00 4.63
1747 2135 1.543802 CTCTTAGCTAGGCCCATCTCG 59.456 57.143 0.00 0.00 0.00 4.04
1748 2136 1.275010 GCTCTTAGCTAGGCCCATCTC 59.725 57.143 0.00 0.00 38.45 2.75
1772 2160 3.603965 TCCTTTTCTGGGCCTTTGTAA 57.396 42.857 4.53 0.00 0.00 2.41
1773 2161 3.227614 GTTCCTTTTCTGGGCCTTTGTA 58.772 45.455 4.53 0.00 0.00 2.41
1797 2185 7.079451 TCCTTTGTTATGTTCTCCTCTCTTT 57.921 36.000 0.00 0.00 0.00 2.52
1875 2263 3.580084 GCCATAGCTGGGGATGGA 58.420 61.111 16.05 0.00 44.72 3.41
1986 2386 2.659610 GAGAGGCCTCACAAGCGT 59.340 61.111 33.90 12.11 39.24 5.07
2041 2443 2.054687 TTTTGCTCAATTCAGCGCAG 57.945 45.000 11.47 0.00 42.92 5.18
2110 2513 0.538057 TACCTGATACTACCGGCCGG 60.538 60.000 42.17 42.17 42.03 6.13
2161 2564 4.628074 GTGTACTAACAAACTGCAGAGGA 58.372 43.478 23.35 0.00 37.36 3.71
2176 2579 6.097356 CCAAGATTCAGTAAAGCGTGTACTA 58.903 40.000 0.00 0.00 31.85 1.82
2177 2580 4.929808 CCAAGATTCAGTAAAGCGTGTACT 59.070 41.667 0.00 0.00 31.85 2.73
2178 2581 4.435651 GCCAAGATTCAGTAAAGCGTGTAC 60.436 45.833 0.00 0.00 31.85 2.90
2179 2582 3.682858 GCCAAGATTCAGTAAAGCGTGTA 59.317 43.478 0.00 0.00 31.85 2.90
2213 2616 2.291411 ACTGCAGAAGGCCAAGATTCAT 60.291 45.455 23.35 0.00 43.89 2.57
2214 2617 1.074405 ACTGCAGAAGGCCAAGATTCA 59.926 47.619 23.35 0.00 43.89 2.57
2257 2717 4.887071 TCATTAACCAAAGCACTTGACACT 59.113 37.500 0.38 0.00 37.17 3.55
2258 2718 5.181690 TCATTAACCAAAGCACTTGACAC 57.818 39.130 0.38 0.00 37.17 3.67
2259 2719 7.517614 TTATCATTAACCAAAGCACTTGACA 57.482 32.000 0.38 0.00 37.17 3.58
2260 2720 8.986477 AATTATCATTAACCAAAGCACTTGAC 57.014 30.769 0.38 0.00 37.17 3.18
2278 2738 6.588719 AAACTGCAACTGGCTTAATTATCA 57.411 33.333 0.00 0.00 45.15 2.15
2280 2740 9.586435 GAATAAAACTGCAACTGGCTTAATTAT 57.414 29.630 0.00 0.00 45.15 1.28
2318 2778 6.995686 TGCCTACTACTTGAGTTCATTTTTCA 59.004 34.615 0.00 0.00 39.81 2.69
2319 2779 7.387948 TCTGCCTACTACTTGAGTTCATTTTTC 59.612 37.037 0.00 0.00 39.81 2.29
2320 2780 7.224297 TCTGCCTACTACTTGAGTTCATTTTT 58.776 34.615 0.00 0.00 39.81 1.94
2328 2788 7.719871 TTATCTTTCTGCCTACTACTTGAGT 57.280 36.000 0.00 0.00 42.69 3.41
2378 2840 4.081476 CCCAGGATGAAAATTTCCAAGGTC 60.081 45.833 3.00 0.00 39.69 3.85
2386 2848 5.127682 CGAATTCCTCCCAGGATGAAAATTT 59.872 40.000 8.25 0.00 45.34 1.82
2395 2857 1.486211 GACTCGAATTCCTCCCAGGA 58.514 55.000 0.00 0.00 44.10 3.86
2401 2863 3.873910 TGAATTGGGACTCGAATTCCTC 58.126 45.455 11.57 3.60 43.16 3.71
2451 2913 7.148272 ACGAGAAAGTAGTAGAACGAAGCTATT 60.148 37.037 0.00 0.00 0.00 1.73
2463 2925 8.452534 ACATTGAGACTAACGAGAAAGTAGTAG 58.547 37.037 0.00 0.00 0.00 2.57
2530 3034 9.403110 GCAAATAATGCGATCAATAAGAAGATT 57.597 29.630 0.00 0.00 46.87 2.40
2577 3082 6.940867 AGTTCCTTAATCTAAACAGGGTGAAC 59.059 38.462 0.00 0.00 0.00 3.18
2688 3193 6.765989 TGGTCAGCCACATTAATCATAGTAAC 59.234 38.462 0.00 0.00 40.46 2.50
2794 3327 4.847444 GCTGCCTCCCCGCTCTTC 62.847 72.222 0.00 0.00 0.00 2.87
2860 3393 0.175989 GGGTCTCCTCATCGACAACC 59.824 60.000 0.00 0.00 31.88 3.77
2992 3525 2.050168 TCGTAGAACCGCGCGTTT 60.050 55.556 29.95 22.74 33.74 3.60
3013 3546 3.387947 AGGTCGCCGTCCCGAAAT 61.388 61.111 0.00 0.00 39.17 2.17
3055 3588 1.373812 GTACACGTGCTCCCCCTTT 59.626 57.895 17.22 0.00 0.00 3.11
3331 3864 2.044352 TCGTCGAGATGGGAGGCA 60.044 61.111 0.00 0.00 0.00 4.75
3344 3877 1.225583 ATTCGTCGTCGTCGTCGTC 60.226 57.895 18.44 5.52 45.27 4.20
3345 3878 1.508539 CATTCGTCGTCGTCGTCGT 60.509 57.895 18.44 1.12 45.27 4.34
3346 3879 0.585764 ATCATTCGTCGTCGTCGTCG 60.586 55.000 14.18 14.18 46.06 5.12
3369 3902 1.606480 CCCGGTCATCATCCATCTTCG 60.606 57.143 0.00 0.00 0.00 3.79
3387 3920 2.113243 AACCTCCTGTGCTCGAACCC 62.113 60.000 0.00 0.00 0.00 4.11
3607 4148 7.872881 AGCATTGAAATCTGTCATGATACATC 58.127 34.615 0.00 0.00 0.00 3.06
3616 4157 5.049198 GTCACTTGAGCATTGAAATCTGTCA 60.049 40.000 0.00 0.00 0.00 3.58
3620 4210 3.438087 CCGTCACTTGAGCATTGAAATCT 59.562 43.478 0.00 0.00 0.00 2.40
3631 4225 4.332819 AGAAAACAACTTCCGTCACTTGAG 59.667 41.667 0.00 0.00 0.00 3.02
3632 4226 4.258543 AGAAAACAACTTCCGTCACTTGA 58.741 39.130 0.00 0.00 0.00 3.02
3633 4227 4.616181 AGAAAACAACTTCCGTCACTTG 57.384 40.909 0.00 0.00 0.00 3.16
3634 4228 5.182380 TGAAAGAAAACAACTTCCGTCACTT 59.818 36.000 0.00 0.00 0.00 3.16
3686 4335 0.834687 TACGCTTGGTGGGTTCTCCT 60.835 55.000 0.00 0.00 42.13 3.69
3715 4364 4.051922 GTGAAGAATAATCCTCGCGTGAT 58.948 43.478 10.21 8.85 0.00 3.06
3722 4371 5.988561 CACTAGCTGGTGAAGAATAATCCTC 59.011 44.000 24.71 0.00 39.34 3.71
3740 4389 8.874816 GCCTGATAATAACTAATAAGCACTAGC 58.125 37.037 0.00 0.00 42.56 3.42
3743 4392 9.277783 CTTGCCTGATAATAACTAATAAGCACT 57.722 33.333 0.00 0.00 0.00 4.40
3745 4394 8.436778 TCCTTGCCTGATAATAACTAATAAGCA 58.563 33.333 0.00 0.00 0.00 3.91
3746 4395 8.722394 GTCCTTGCCTGATAATAACTAATAAGC 58.278 37.037 0.00 0.00 0.00 3.09
3747 4396 9.778741 TGTCCTTGCCTGATAATAACTAATAAG 57.221 33.333 0.00 0.00 0.00 1.73
3748 4397 9.555727 GTGTCCTTGCCTGATAATAACTAATAA 57.444 33.333 0.00 0.00 0.00 1.40
3750 4399 6.998673 GGTGTCCTTGCCTGATAATAACTAAT 59.001 38.462 0.00 0.00 0.00 1.73
3751 4400 6.069905 TGGTGTCCTTGCCTGATAATAACTAA 60.070 38.462 0.00 0.00 0.00 2.24
3752 4401 5.427157 TGGTGTCCTTGCCTGATAATAACTA 59.573 40.000 0.00 0.00 0.00 2.24
3753 4402 4.227300 TGGTGTCCTTGCCTGATAATAACT 59.773 41.667 0.00 0.00 0.00 2.24
3754 4403 4.523083 TGGTGTCCTTGCCTGATAATAAC 58.477 43.478 0.00 0.00 0.00 1.89
3763 4412 2.683211 AAATTCTGGTGTCCTTGCCT 57.317 45.000 0.00 0.00 0.00 4.75
3798 4447 4.603231 TTTCGCGAACTTTGTGTAACTT 57.397 36.364 23.33 0.00 38.04 2.66
3839 4488 2.093500 TCTGCCGATTTCACTATGCTGT 60.093 45.455 0.00 0.00 0.00 4.40
3840 4489 2.554142 TCTGCCGATTTCACTATGCTG 58.446 47.619 0.00 0.00 0.00 4.41
3841 4490 2.988010 TCTGCCGATTTCACTATGCT 57.012 45.000 0.00 0.00 0.00 3.79
3842 4491 3.812053 AGAATCTGCCGATTTCACTATGC 59.188 43.478 4.76 0.00 39.89 3.14
3843 4492 5.052481 TGAGAATCTGCCGATTTCACTATG 58.948 41.667 4.76 0.00 39.89 2.23
3844 4493 5.282055 TGAGAATCTGCCGATTTCACTAT 57.718 39.130 4.76 0.00 39.89 2.12
3845 4494 4.736126 TGAGAATCTGCCGATTTCACTA 57.264 40.909 4.76 0.00 39.89 2.74
3846 4495 3.616956 TGAGAATCTGCCGATTTCACT 57.383 42.857 4.76 0.00 39.89 3.41
3847 4496 3.686726 AGTTGAGAATCTGCCGATTTCAC 59.313 43.478 4.76 0.91 39.89 3.18
3848 4497 3.686241 CAGTTGAGAATCTGCCGATTTCA 59.314 43.478 4.76 7.88 39.89 2.69
3849 4498 3.935203 TCAGTTGAGAATCTGCCGATTTC 59.065 43.478 4.76 5.69 39.89 2.17
3850 4499 3.942829 TCAGTTGAGAATCTGCCGATTT 58.057 40.909 4.76 0.00 39.89 2.17
3851 4500 3.616956 TCAGTTGAGAATCTGCCGATT 57.383 42.857 2.68 2.68 42.41 3.34
3878 4527 3.539604 CTTCTCTTTGCTACCTGGATGG 58.460 50.000 0.00 0.00 42.93 3.51
3880 4529 2.573462 TGCTTCTCTTTGCTACCTGGAT 59.427 45.455 0.00 0.00 0.00 3.41
3911 4560 5.381757 ACCTGTTGCTTCATTTGGTTACTA 58.618 37.500 0.00 0.00 0.00 1.82
3942 4591 7.433425 GGCACTTGAGTTTATATTTCATCAAGC 59.567 37.037 11.53 1.67 44.66 4.01
3971 4620 7.438160 GTGGTGAAAAAGTGAATTTCTTAAGGG 59.562 37.037 1.85 0.00 37.60 3.95
3997 4646 6.591834 CCTTGTTGAGAATAACTACACTCTGG 59.408 42.308 0.00 0.00 0.00 3.86
4030 4679 0.174617 TGTGTCGTGAGCTTGTGTCA 59.825 50.000 0.00 0.00 0.00 3.58
4052 4702 1.268743 GGTCTCCGAAATACCCGTACG 60.269 57.143 8.69 8.69 0.00 3.67
4057 4707 5.223449 TCATTATGGTCTCCGAAATACCC 57.777 43.478 0.00 0.00 31.97 3.69
4274 4925 3.347411 GGTCAGCCGTGTCTATGTC 57.653 57.895 0.00 0.00 0.00 3.06
4343 4994 2.631062 TGTCCGTGTTACCAATCTGTCT 59.369 45.455 0.00 0.00 0.00 3.41
4365 5016 1.337817 CGCAGGAACGACGAGAACAG 61.338 60.000 0.00 0.00 33.61 3.16
4366 5017 1.371267 CGCAGGAACGACGAGAACA 60.371 57.895 0.00 0.00 33.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.