Multiple sequence alignment - TraesCS6B01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G380400 chr6B 100.000 2649 0 0 1 2649 655068181 655065533 0.000000e+00 4892
1 TraesCS6B01G380400 chr6B 90.952 1702 137 9 295 1987 618934392 618936085 0.000000e+00 2274
2 TraesCS6B01G380400 chr6B 79.762 252 45 4 42 291 549032085 549032332 7.530000e-41 178
3 TraesCS6B01G380400 chr5B 93.408 1699 95 6 291 1987 54116580 54114897 0.000000e+00 2501
4 TraesCS6B01G380400 chr1B 93.047 1697 113 1 291 1987 61492795 61491104 0.000000e+00 2475
5 TraesCS6B01G380400 chr7D 92.033 1707 111 7 291 1987 621162271 621163962 0.000000e+00 2375
6 TraesCS6B01G380400 chr7D 81.349 252 41 4 42 291 110893545 110893792 1.610000e-47 200
7 TraesCS6B01G380400 chr3D 91.911 1706 111 7 291 1987 124068744 124067057 0.000000e+00 2361
8 TraesCS6B01G380400 chr3B 92.640 1644 113 5 291 1934 496764852 496766487 0.000000e+00 2359
9 TraesCS6B01G380400 chr3B 87.372 293 33 3 1 291 707908915 707908625 1.520000e-87 333
10 TraesCS6B01G380400 chr3B 89.496 238 22 2 1 236 11572367 11572131 5.540000e-77 298
11 TraesCS6B01G380400 chr7A 91.251 1703 132 7 294 1987 86218406 86216712 0.000000e+00 2303
12 TraesCS6B01G380400 chr7A 81.200 250 39 6 42 288 116022193 116022437 7.480000e-46 195
13 TraesCS6B01G380400 chr2A 91.576 1650 118 7 291 1931 706884692 706886329 0.000000e+00 2257
14 TraesCS6B01G380400 chr4B 90.281 1708 146 13 291 1987 483940090 483941788 0.000000e+00 2217
15 TraesCS6B01G380400 chr6D 85.249 583 50 21 1999 2559 433580707 433580139 3.830000e-158 568
16 TraesCS6B01G380400 chr3A 87.063 286 34 2 5 288 623006507 623006791 1.180000e-83 320
17 TraesCS6B01G380400 chr6A 80.446 404 43 19 2136 2529 579766010 579765633 2.600000e-70 276
18 TraesCS6B01G380400 chr2B 92.908 141 9 1 156 295 23129173 23129033 1.240000e-48 204
19 TraesCS6B01G380400 chr7B 80.159 252 44 4 42 291 69852516 69852763 1.620000e-42 183
20 TraesCS6B01G380400 chr7B 79.200 250 45 6 44 291 69995674 69995918 1.630000e-37 167
21 TraesCS6B01G380400 chr7B 78.968 252 46 5 42 291 70342652 70342898 5.870000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G380400 chr6B 655065533 655068181 2648 True 4892 4892 100.000 1 2649 1 chr6B.!!$R1 2648
1 TraesCS6B01G380400 chr6B 618934392 618936085 1693 False 2274 2274 90.952 295 1987 1 chr6B.!!$F2 1692
2 TraesCS6B01G380400 chr5B 54114897 54116580 1683 True 2501 2501 93.408 291 1987 1 chr5B.!!$R1 1696
3 TraesCS6B01G380400 chr1B 61491104 61492795 1691 True 2475 2475 93.047 291 1987 1 chr1B.!!$R1 1696
4 TraesCS6B01G380400 chr7D 621162271 621163962 1691 False 2375 2375 92.033 291 1987 1 chr7D.!!$F2 1696
5 TraesCS6B01G380400 chr3D 124067057 124068744 1687 True 2361 2361 91.911 291 1987 1 chr3D.!!$R1 1696
6 TraesCS6B01G380400 chr3B 496764852 496766487 1635 False 2359 2359 92.640 291 1934 1 chr3B.!!$F1 1643
7 TraesCS6B01G380400 chr7A 86216712 86218406 1694 True 2303 2303 91.251 294 1987 1 chr7A.!!$R1 1693
8 TraesCS6B01G380400 chr2A 706884692 706886329 1637 False 2257 2257 91.576 291 1931 1 chr2A.!!$F1 1640
9 TraesCS6B01G380400 chr4B 483940090 483941788 1698 False 2217 2217 90.281 291 1987 1 chr4B.!!$F1 1696
10 TraesCS6B01G380400 chr6D 433580139 433580707 568 True 568 568 85.249 1999 2559 1 chr6D.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 578 0.035534 TCCTAGTACACCGCGGTACA 60.036 55.0 33.7 19.21 44.76 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 1812 0.106708 ACCACACTTCGACAGCACAT 59.893 50.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.194433 CGGATGTCCTTGATAGATATTTGATG 57.806 38.462 0.00 0.00 0.00 3.07
26 27 8.037166 CGGATGTCCTTGATAGATATTTGATGA 58.963 37.037 0.00 0.00 0.00 2.92
27 28 9.381033 GGATGTCCTTGATAGATATTTGATGAG 57.619 37.037 0.00 0.00 0.00 2.90
30 31 9.372189 TGTCCTTGATAGATATTTGATGAGAGA 57.628 33.333 0.00 0.00 0.00 3.10
31 32 9.638239 GTCCTTGATAGATATTTGATGAGAGAC 57.362 37.037 0.00 0.00 0.00 3.36
32 33 9.599056 TCCTTGATAGATATTTGATGAGAGACT 57.401 33.333 0.00 0.00 0.00 3.24
33 34 9.859427 CCTTGATAGATATTTGATGAGAGACTC 57.141 37.037 0.00 0.00 0.00 3.36
34 35 9.859427 CTTGATAGATATTTGATGAGAGACTCC 57.141 37.037 0.00 0.00 0.00 3.85
35 36 8.359875 TGATAGATATTTGATGAGAGACTCCC 57.640 38.462 0.00 0.00 0.00 4.30
36 37 7.952368 TGATAGATATTTGATGAGAGACTCCCA 59.048 37.037 0.00 0.00 0.00 4.37
37 38 8.733092 ATAGATATTTGATGAGAGACTCCCAA 57.267 34.615 0.00 0.00 0.00 4.12
38 39 6.825610 AGATATTTGATGAGAGACTCCCAAC 58.174 40.000 0.00 0.00 0.00 3.77
39 40 3.703001 TTTGATGAGAGACTCCCAACC 57.297 47.619 0.00 0.00 0.00 3.77
40 41 2.630889 TGATGAGAGACTCCCAACCT 57.369 50.000 0.00 0.00 0.00 3.50
41 42 2.182827 TGATGAGAGACTCCCAACCTG 58.817 52.381 0.00 0.00 0.00 4.00
42 43 2.225369 TGATGAGAGACTCCCAACCTGA 60.225 50.000 0.00 0.00 0.00 3.86
43 44 2.398754 TGAGAGACTCCCAACCTGAA 57.601 50.000 0.00 0.00 0.00 3.02
44 45 2.689658 TGAGAGACTCCCAACCTGAAA 58.310 47.619 0.00 0.00 0.00 2.69
45 46 3.251484 TGAGAGACTCCCAACCTGAAAT 58.749 45.455 0.00 0.00 0.00 2.17
46 47 4.425772 TGAGAGACTCCCAACCTGAAATA 58.574 43.478 0.00 0.00 0.00 1.40
47 48 4.223032 TGAGAGACTCCCAACCTGAAATAC 59.777 45.833 0.00 0.00 0.00 1.89
48 49 4.430441 AGAGACTCCCAACCTGAAATACT 58.570 43.478 0.00 0.00 0.00 2.12
49 50 4.223923 AGAGACTCCCAACCTGAAATACTG 59.776 45.833 0.00 0.00 0.00 2.74
50 51 3.264450 AGACTCCCAACCTGAAATACTGG 59.736 47.826 0.00 0.00 42.26 4.00
51 52 3.256704 ACTCCCAACCTGAAATACTGGA 58.743 45.455 0.00 0.00 40.23 3.86
52 53 3.009143 ACTCCCAACCTGAAATACTGGAC 59.991 47.826 0.00 0.00 40.23 4.02
53 54 2.027561 TCCCAACCTGAAATACTGGACG 60.028 50.000 0.00 0.00 40.23 4.79
54 55 2.027561 CCCAACCTGAAATACTGGACGA 60.028 50.000 0.00 0.00 40.23 4.20
55 56 3.558321 CCCAACCTGAAATACTGGACGAA 60.558 47.826 0.00 0.00 40.23 3.85
56 57 4.261801 CCAACCTGAAATACTGGACGAAT 58.738 43.478 0.00 0.00 40.23 3.34
57 58 4.094887 CCAACCTGAAATACTGGACGAATG 59.905 45.833 0.00 0.00 40.23 2.67
58 59 3.270877 ACCTGAAATACTGGACGAATGC 58.729 45.455 0.00 0.00 40.23 3.56
59 60 3.055094 ACCTGAAATACTGGACGAATGCT 60.055 43.478 0.00 0.00 40.23 3.79
60 61 4.161565 ACCTGAAATACTGGACGAATGCTA 59.838 41.667 0.00 0.00 40.23 3.49
61 62 4.508124 CCTGAAATACTGGACGAATGCTAC 59.492 45.833 0.00 0.00 39.52 3.58
62 63 5.339008 TGAAATACTGGACGAATGCTACT 57.661 39.130 0.00 0.00 0.00 2.57
63 64 5.730550 TGAAATACTGGACGAATGCTACTT 58.269 37.500 0.00 0.00 0.00 2.24
64 65 6.170506 TGAAATACTGGACGAATGCTACTTT 58.829 36.000 0.00 0.00 0.00 2.66
65 66 6.653320 TGAAATACTGGACGAATGCTACTTTT 59.347 34.615 0.00 0.00 0.00 2.27
66 67 7.174253 TGAAATACTGGACGAATGCTACTTTTT 59.826 33.333 0.00 0.00 0.00 1.94
67 68 4.749245 ACTGGACGAATGCTACTTTTTG 57.251 40.909 0.00 0.00 0.00 2.44
68 69 3.502211 ACTGGACGAATGCTACTTTTTGG 59.498 43.478 0.00 0.00 0.00 3.28
69 70 3.482436 TGGACGAATGCTACTTTTTGGT 58.518 40.909 0.00 0.00 0.00 3.67
70 71 4.643463 TGGACGAATGCTACTTTTTGGTA 58.357 39.130 0.00 0.00 0.00 3.25
71 72 4.693566 TGGACGAATGCTACTTTTTGGTAG 59.306 41.667 0.00 0.00 41.31 3.18
72 73 4.933400 GGACGAATGCTACTTTTTGGTAGA 59.067 41.667 5.92 0.00 40.98 2.59
73 74 5.410439 GGACGAATGCTACTTTTTGGTAGAA 59.590 40.000 5.92 0.00 40.98 2.10
74 75 6.237313 ACGAATGCTACTTTTTGGTAGAAC 57.763 37.500 5.92 0.00 40.98 3.01
75 76 5.761234 ACGAATGCTACTTTTTGGTAGAACA 59.239 36.000 5.92 0.00 40.98 3.18
76 77 6.430000 ACGAATGCTACTTTTTGGTAGAACAT 59.570 34.615 5.92 0.00 40.98 2.71
77 78 6.742718 CGAATGCTACTTTTTGGTAGAACATG 59.257 38.462 5.92 0.00 40.98 3.21
78 79 7.360861 CGAATGCTACTTTTTGGTAGAACATGA 60.361 37.037 0.00 0.00 40.98 3.07
79 80 6.801539 TGCTACTTTTTGGTAGAACATGAG 57.198 37.500 0.00 0.00 40.98 2.90
80 81 5.705441 TGCTACTTTTTGGTAGAACATGAGG 59.295 40.000 0.00 0.00 40.98 3.86
81 82 5.392057 GCTACTTTTTGGTAGAACATGAGGC 60.392 44.000 0.00 0.00 40.98 4.70
82 83 3.502211 ACTTTTTGGTAGAACATGAGGCG 59.498 43.478 0.00 0.00 0.00 5.52
83 84 1.448985 TTTGGTAGAACATGAGGCGC 58.551 50.000 0.00 0.00 0.00 6.53
84 85 0.613260 TTGGTAGAACATGAGGCGCT 59.387 50.000 7.64 0.00 0.00 5.92
85 86 0.613260 TGGTAGAACATGAGGCGCTT 59.387 50.000 7.64 0.00 0.00 4.68
86 87 1.828595 TGGTAGAACATGAGGCGCTTA 59.171 47.619 7.64 0.00 0.00 3.09
87 88 2.434336 TGGTAGAACATGAGGCGCTTAT 59.566 45.455 7.64 0.00 0.00 1.73
88 89 3.118408 TGGTAGAACATGAGGCGCTTATT 60.118 43.478 7.64 0.00 0.00 1.40
89 90 3.248602 GGTAGAACATGAGGCGCTTATTG 59.751 47.826 7.64 3.23 0.00 1.90
90 91 1.672881 AGAACATGAGGCGCTTATTGC 59.327 47.619 7.64 0.00 38.57 3.56
91 92 1.672881 GAACATGAGGCGCTTATTGCT 59.327 47.619 7.64 0.00 40.11 3.91
92 93 1.755179 ACATGAGGCGCTTATTGCTT 58.245 45.000 7.64 0.00 40.11 3.91
93 94 2.917933 ACATGAGGCGCTTATTGCTTA 58.082 42.857 7.64 0.00 40.11 3.09
94 95 2.874701 ACATGAGGCGCTTATTGCTTAG 59.125 45.455 7.64 0.00 40.11 2.18
95 96 1.299541 TGAGGCGCTTATTGCTTAGC 58.700 50.000 7.64 0.00 40.11 3.09
96 97 0.588737 GAGGCGCTTATTGCTTAGCC 59.411 55.000 7.64 0.00 43.19 3.93
97 98 0.107214 AGGCGCTTATTGCTTAGCCA 60.107 50.000 7.64 0.00 44.60 4.75
98 99 0.954452 GGCGCTTATTGCTTAGCCAT 59.046 50.000 7.64 0.00 42.66 4.40
99 100 2.151202 GGCGCTTATTGCTTAGCCATA 58.849 47.619 7.64 0.00 42.66 2.74
100 101 2.095718 GGCGCTTATTGCTTAGCCATAC 60.096 50.000 7.64 0.00 42.66 2.39
101 102 2.095718 GCGCTTATTGCTTAGCCATACC 60.096 50.000 0.00 0.00 40.11 2.73
102 103 3.403038 CGCTTATTGCTTAGCCATACCT 58.597 45.455 0.29 0.00 40.11 3.08
103 104 3.815401 CGCTTATTGCTTAGCCATACCTT 59.185 43.478 0.29 0.00 40.11 3.50
104 105 4.275936 CGCTTATTGCTTAGCCATACCTTT 59.724 41.667 0.29 0.00 40.11 3.11
105 106 5.468746 CGCTTATTGCTTAGCCATACCTTTA 59.531 40.000 0.29 0.00 40.11 1.85
106 107 6.565999 CGCTTATTGCTTAGCCATACCTTTAC 60.566 42.308 0.29 0.00 40.11 2.01
107 108 6.294010 GCTTATTGCTTAGCCATACCTTTACC 60.294 42.308 0.29 0.00 38.95 2.85
108 109 4.577988 TTGCTTAGCCATACCTTTACCA 57.422 40.909 0.29 0.00 0.00 3.25
109 110 4.788925 TGCTTAGCCATACCTTTACCAT 57.211 40.909 0.29 0.00 0.00 3.55
110 111 5.124036 TGCTTAGCCATACCTTTACCATT 57.876 39.130 0.29 0.00 0.00 3.16
111 112 5.515106 TGCTTAGCCATACCTTTACCATTT 58.485 37.500 0.29 0.00 0.00 2.32
112 113 5.955355 TGCTTAGCCATACCTTTACCATTTT 59.045 36.000 0.29 0.00 0.00 1.82
113 114 7.120051 TGCTTAGCCATACCTTTACCATTTTA 58.880 34.615 0.29 0.00 0.00 1.52
114 115 7.284489 TGCTTAGCCATACCTTTACCATTTTAG 59.716 37.037 0.29 0.00 0.00 1.85
115 116 7.284716 GCTTAGCCATACCTTTACCATTTTAGT 59.715 37.037 0.00 0.00 0.00 2.24
116 117 9.841295 CTTAGCCATACCTTTACCATTTTAGTA 57.159 33.333 0.00 0.00 0.00 1.82
198 199 8.788325 AATAAAGTGAGTCTAACCCATTACAC 57.212 34.615 0.00 0.00 0.00 2.90
199 200 5.818678 AAGTGAGTCTAACCCATTACACA 57.181 39.130 0.00 0.00 0.00 3.72
200 201 6.374417 AAGTGAGTCTAACCCATTACACAT 57.626 37.500 0.00 0.00 0.00 3.21
201 202 7.490657 AAGTGAGTCTAACCCATTACACATA 57.509 36.000 0.00 0.00 0.00 2.29
202 203 7.676683 AGTGAGTCTAACCCATTACACATAT 57.323 36.000 0.00 0.00 0.00 1.78
203 204 8.090788 AGTGAGTCTAACCCATTACACATATT 57.909 34.615 0.00 0.00 0.00 1.28
204 205 9.209048 AGTGAGTCTAACCCATTACACATATTA 57.791 33.333 0.00 0.00 0.00 0.98
205 206 9.477484 GTGAGTCTAACCCATTACACATATTAG 57.523 37.037 0.00 0.00 0.00 1.73
206 207 9.209048 TGAGTCTAACCCATTACACATATTAGT 57.791 33.333 0.00 0.00 0.00 2.24
242 243 9.949174 ATGTGAAAATTGTTTGAAATTTTAGGC 57.051 25.926 7.42 3.34 45.31 3.93
243 244 8.401709 TGTGAAAATTGTTTGAAATTTTAGGCC 58.598 29.630 0.00 0.00 45.31 5.19
244 245 8.401709 GTGAAAATTGTTTGAAATTTTAGGCCA 58.598 29.630 5.01 0.00 45.31 5.36
245 246 8.401709 TGAAAATTGTTTGAAATTTTAGGCCAC 58.598 29.630 5.01 0.00 45.31 5.01
246 247 7.872113 AAATTGTTTGAAATTTTAGGCCACA 57.128 28.000 5.01 0.00 36.56 4.17
247 248 8.462589 AAATTGTTTGAAATTTTAGGCCACAT 57.537 26.923 5.01 0.00 36.56 3.21
248 249 8.462589 AATTGTTTGAAATTTTAGGCCACATT 57.537 26.923 5.01 0.00 0.00 2.71
249 250 7.872113 TTGTTTGAAATTTTAGGCCACATTT 57.128 28.000 5.01 3.17 0.00 2.32
250 251 7.872113 TGTTTGAAATTTTAGGCCACATTTT 57.128 28.000 5.01 0.00 0.00 1.82
251 252 7.701445 TGTTTGAAATTTTAGGCCACATTTTG 58.299 30.769 5.01 0.00 0.00 2.44
263 264 2.869192 CCACATTTTGGTTTTTGTCCGG 59.131 45.455 0.00 0.00 41.10 5.14
264 265 2.869192 CACATTTTGGTTTTTGTCCGGG 59.131 45.455 0.00 0.00 0.00 5.73
265 266 2.158885 ACATTTTGGTTTTTGTCCGGGG 60.159 45.455 0.00 0.00 0.00 5.73
266 267 0.178301 TTTTGGTTTTTGTCCGGGGC 59.822 50.000 0.00 0.00 0.00 5.80
267 268 1.687297 TTTGGTTTTTGTCCGGGGCC 61.687 55.000 0.00 0.00 0.00 5.80
268 269 3.307906 GGTTTTTGTCCGGGGCCC 61.308 66.667 15.76 15.76 0.00 5.80
269 270 3.307906 GTTTTTGTCCGGGGCCCC 61.308 66.667 33.22 33.22 0.00 5.80
270 271 4.624628 TTTTTGTCCGGGGCCCCC 62.625 66.667 36.13 22.05 41.09 5.40
275 276 4.392166 GTCCGGGGCCCCCAATTT 62.392 66.667 36.13 0.00 45.83 1.82
276 277 3.606242 TCCGGGGCCCCCAATTTT 61.606 61.111 36.13 0.00 45.83 1.82
277 278 2.609299 CCGGGGCCCCCAATTTTT 60.609 61.111 36.13 0.00 45.83 1.94
278 279 2.668024 CGGGGCCCCCAATTTTTG 59.332 61.111 36.13 14.93 45.83 2.44
288 289 3.812577 CAATTTTTGGAGACGGCCC 57.187 52.632 0.00 0.00 0.00 5.80
289 290 1.256812 CAATTTTTGGAGACGGCCCT 58.743 50.000 0.00 0.00 0.00 5.19
450 460 1.112113 GAGGTCGATCTGCCAGGTAA 58.888 55.000 0.91 0.00 0.00 2.85
497 507 2.045926 ATGTGCACCGCCTCTTCC 60.046 61.111 15.69 0.00 0.00 3.46
560 570 2.338577 TAGCCGTCTCCTAGTACACC 57.661 55.000 0.00 0.00 0.00 4.16
568 578 0.035534 TCCTAGTACACCGCGGTACA 60.036 55.000 33.70 19.21 44.76 2.90
587 597 0.988832 AACGGTCATTAGGAGCCCAA 59.011 50.000 0.00 0.00 40.99 4.12
596 606 5.307196 GTCATTAGGAGCCCAATAGGTCTTA 59.693 44.000 0.00 0.00 38.26 2.10
617 627 2.736670 ACTTGCACCACTTCTTCCTT 57.263 45.000 0.00 0.00 0.00 3.36
657 667 3.336122 GCCTGATTCATGGCCTAGG 57.664 57.895 3.67 3.67 43.11 3.02
750 760 5.303165 CCTTCATGAGCACTGCATTAGATA 58.697 41.667 3.30 0.00 0.00 1.98
797 807 2.086054 AGTTCGAGCACACCTTCATC 57.914 50.000 1.01 0.00 0.00 2.92
922 932 3.237741 GGCGATGGGGAGGAGGAG 61.238 72.222 0.00 0.00 0.00 3.69
962 973 0.794934 AGGGGGTGGGTAAGTAGTGA 59.205 55.000 0.00 0.00 0.00 3.41
1071 1085 0.250209 CTCTGTGCAGTGCCTGACTT 60.250 55.000 13.72 0.00 32.44 3.01
1149 1163 0.594796 GTTGACAACAAGGGCAAGCG 60.595 55.000 13.52 0.00 36.64 4.68
1177 1191 2.511600 CCAATGCCCGACGAGGTC 60.512 66.667 0.00 0.00 38.74 3.85
1213 1227 1.248785 CCGAGGAAGACCCGAAGACA 61.249 60.000 0.00 0.00 40.87 3.41
1219 1233 1.550976 GAAGACCCGAAGACACCTGAT 59.449 52.381 0.00 0.00 0.00 2.90
1338 1358 0.400213 AGGTCATCCTTGCACCGAAA 59.600 50.000 0.00 0.00 42.12 3.46
1386 1406 2.108157 ACCAAGCACTTCGTCGCA 59.892 55.556 0.00 0.00 0.00 5.10
1593 1613 0.036388 ACGACGATGGCATTGAGGTT 60.036 50.000 21.46 0.00 0.00 3.50
1647 1667 3.081409 GCCAAGGAGTAGGGCCGA 61.081 66.667 0.00 0.00 41.90 5.54
1667 1687 2.863137 GAGCCACTTCTTTCGAGCATAG 59.137 50.000 0.00 0.00 0.00 2.23
1672 1692 5.592054 CCACTTCTTTCGAGCATAGTATCA 58.408 41.667 0.00 0.00 0.00 2.15
1679 1699 5.836821 TTCGAGCATAGTATCAAGTCTGT 57.163 39.130 0.00 0.00 0.00 3.41
1696 1716 8.681806 TCAAGTCTGTTTTGAACATGTTTATGA 58.318 29.630 13.36 3.20 41.26 2.15
1829 1861 1.271597 ACCAGCTAGCCAAAGAGGTTG 60.272 52.381 12.13 0.00 40.61 3.77
1841 1873 1.496060 AGAGGTTGTCACACACCAGA 58.504 50.000 10.60 0.00 0.00 3.86
1854 1886 2.483877 CACACCAGACGTTGCATACAAT 59.516 45.455 0.00 0.00 38.27 2.71
1862 1894 3.550561 ACGTTGCATACAATCAAACACG 58.449 40.909 0.00 0.00 38.27 4.49
1881 1913 2.086869 CGATGCCTTGAGTTTGTCCAT 58.913 47.619 0.00 0.00 0.00 3.41
1888 1920 6.007076 TGCCTTGAGTTTGTCCATTAACATA 58.993 36.000 0.00 0.00 0.00 2.29
1904 1936 7.255451 CCATTAACATACAGACAACCAAACACT 60.255 37.037 0.00 0.00 0.00 3.55
1968 2000 4.244066 GCAACCAAACAACATGCATATGA 58.756 39.130 16.23 0.00 37.73 2.15
1988 2020 2.945447 TGCATTTGAGGCTGCATTAC 57.055 45.000 0.50 0.00 43.11 1.89
1989 2021 2.169330 TGCATTTGAGGCTGCATTACA 58.831 42.857 0.50 0.00 43.11 2.41
1990 2022 2.094597 TGCATTTGAGGCTGCATTACAC 60.095 45.455 0.50 0.00 43.11 2.90
1991 2023 2.736400 GCATTTGAGGCTGCATTACACC 60.736 50.000 0.50 0.00 38.28 4.16
1992 2024 1.544724 TTTGAGGCTGCATTACACCC 58.455 50.000 0.50 0.00 0.00 4.61
1993 2025 0.323360 TTGAGGCTGCATTACACCCC 60.323 55.000 0.50 0.00 0.00 4.95
1994 2026 1.453928 GAGGCTGCATTACACCCCC 60.454 63.158 0.50 0.00 0.00 5.40
1995 2027 2.210144 GAGGCTGCATTACACCCCCA 62.210 60.000 0.50 0.00 0.00 4.96
1996 2028 1.076044 GGCTGCATTACACCCCCAT 60.076 57.895 0.50 0.00 0.00 4.00
1997 2029 1.394266 GGCTGCATTACACCCCCATG 61.394 60.000 0.50 0.00 0.00 3.66
2054 2090 2.507992 CGCCTGGTCGAGAAGCTG 60.508 66.667 4.82 0.00 0.00 4.24
2095 2134 3.365265 CCCTTGCTTGTCCGGCAC 61.365 66.667 0.00 0.00 39.55 5.01
2134 2173 2.893398 GTTGCCGATCGGGAGTCT 59.107 61.111 33.98 0.00 36.83 3.24
2136 2175 2.771639 TTGCCGATCGGGAGTCTCG 61.772 63.158 33.98 5.91 36.83 4.04
2144 2183 0.253894 TCGGGAGTCTCGTGTCCATA 59.746 55.000 13.09 0.00 34.14 2.74
2157 2198 0.389757 GTCCATACCTTCCTCTCCGC 59.610 60.000 0.00 0.00 0.00 5.54
2187 2228 2.378634 CCCAGATTCCCCGCCTCTT 61.379 63.158 0.00 0.00 0.00 2.85
2189 2230 1.147153 CAGATTCCCCGCCTCTTCC 59.853 63.158 0.00 0.00 0.00 3.46
2290 2331 1.837051 ACCTCAGCCTCAACGTCCA 60.837 57.895 0.00 0.00 0.00 4.02
2309 2371 3.151022 CTCCTCCCAGTCTCCGCC 61.151 72.222 0.00 0.00 0.00 6.13
2314 2376 3.151022 CCCAGTCTCCGCCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
2319 2381 1.077357 GTCTCCGCCCTCTCTCTCA 60.077 63.158 0.00 0.00 0.00 3.27
2320 2382 0.681564 GTCTCCGCCCTCTCTCTCAA 60.682 60.000 0.00 0.00 0.00 3.02
2321 2383 0.039764 TCTCCGCCCTCTCTCTCAAA 59.960 55.000 0.00 0.00 0.00 2.69
2322 2384 1.118838 CTCCGCCCTCTCTCTCAAAT 58.881 55.000 0.00 0.00 0.00 2.32
2323 2385 1.484240 CTCCGCCCTCTCTCTCAAATT 59.516 52.381 0.00 0.00 0.00 1.82
2324 2386 1.482593 TCCGCCCTCTCTCTCAAATTC 59.517 52.381 0.00 0.00 0.00 2.17
2325 2387 1.484240 CCGCCCTCTCTCTCAAATTCT 59.516 52.381 0.00 0.00 0.00 2.40
2326 2388 2.482839 CCGCCCTCTCTCTCAAATTCTC 60.483 54.545 0.00 0.00 0.00 2.87
2334 2396 7.329499 CCTCTCTCTCAAATTCTCAATTCTCA 58.671 38.462 0.00 0.00 0.00 3.27
2345 2407 8.551682 AATTCTCAATTCTCACCTCTCTCTAT 57.448 34.615 0.00 0.00 0.00 1.98
2367 2429 1.973515 TCTCAGCTTCTCCTTCAGCAA 59.026 47.619 0.00 0.00 38.61 3.91
2368 2430 2.028294 TCTCAGCTTCTCCTTCAGCAAG 60.028 50.000 0.00 0.00 38.61 4.01
2370 2432 2.028294 TCAGCTTCTCCTTCAGCAAGAG 60.028 50.000 0.00 0.00 38.61 2.85
2371 2433 2.028294 CAGCTTCTCCTTCAGCAAGAGA 60.028 50.000 0.00 0.00 38.61 3.10
2372 2434 2.636893 AGCTTCTCCTTCAGCAAGAGAA 59.363 45.455 0.00 0.00 38.61 2.87
2373 2435 3.002102 GCTTCTCCTTCAGCAAGAGAAG 58.998 50.000 19.70 19.70 41.30 2.85
2397 2459 5.693104 GGATACTGTCGCGGTTAATTAATCA 59.307 40.000 6.13 0.00 0.00 2.57
2402 2464 5.812652 TGTCGCGGTTAATTAATCAAATCC 58.187 37.500 6.13 0.44 0.00 3.01
2408 2470 5.905181 CGGTTAATTAATCAAATCCGTTCCG 59.095 40.000 9.11 5.41 31.23 4.30
2421 2483 1.281656 GTTCCGGTCCGTTTTGCAG 59.718 57.895 11.06 0.00 0.00 4.41
2432 2494 1.810031 CGTTTTGCAGGTGAGGTGAGA 60.810 52.381 0.00 0.00 0.00 3.27
2455 2517 0.819259 TTGCTTGAAGCCGCTGTTCT 60.819 50.000 15.43 0.00 41.51 3.01
2459 2521 1.461127 CTTGAAGCCGCTGTTCTGTAC 59.539 52.381 0.00 0.00 0.00 2.90
2460 2522 0.391228 TGAAGCCGCTGTTCTGTACA 59.609 50.000 0.00 0.00 34.95 2.90
2486 2548 6.636562 ACGGAGTACTAGATGATTACCTTG 57.363 41.667 0.00 0.00 41.94 3.61
2498 2560 4.577096 TGATTACCTTGGGATGGGATAGT 58.423 43.478 0.00 0.00 0.00 2.12
2500 2562 2.587060 ACCTTGGGATGGGATAGTGA 57.413 50.000 0.00 0.00 0.00 3.41
2513 2575 4.081142 TGGGATAGTGAAGCTTCGATTTCA 60.081 41.667 21.11 10.47 0.00 2.69
2517 2579 3.188895 GTGAAGCTTCGATTTCACCAC 57.811 47.619 21.11 7.59 44.56 4.16
2541 2603 1.080025 GTGGTCGCCGCTAACTCTT 60.080 57.895 2.68 0.00 0.00 2.85
2554 2616 3.187432 GCTAACTCTTTCACAACCTGCTC 59.813 47.826 0.00 0.00 0.00 4.26
2559 2621 2.880268 TCTTTCACAACCTGCTCATGTG 59.120 45.455 0.00 0.00 44.45 3.21
2561 2623 1.882912 TCACAACCTGCTCATGTGAC 58.117 50.000 3.87 0.00 46.11 3.67
2562 2624 0.514255 CACAACCTGCTCATGTGACG 59.486 55.000 0.00 0.00 45.61 4.35
2563 2625 0.603707 ACAACCTGCTCATGTGACGG 60.604 55.000 0.00 0.43 0.00 4.79
2564 2626 1.672356 AACCTGCTCATGTGACGGC 60.672 57.895 0.00 0.00 0.00 5.68
2565 2627 2.116983 AACCTGCTCATGTGACGGCT 62.117 55.000 0.00 0.00 0.00 5.52
2566 2628 2.104859 CCTGCTCATGTGACGGCTG 61.105 63.158 0.00 0.00 0.00 4.85
2567 2629 1.079612 CTGCTCATGTGACGGCTGA 60.080 57.895 0.00 0.00 0.00 4.26
2568 2630 0.461516 CTGCTCATGTGACGGCTGAT 60.462 55.000 0.00 0.00 0.00 2.90
2569 2631 0.741927 TGCTCATGTGACGGCTGATG 60.742 55.000 0.00 0.00 0.00 3.07
2570 2632 0.742281 GCTCATGTGACGGCTGATGT 60.742 55.000 0.00 0.00 0.00 3.06
2571 2633 1.730501 CTCATGTGACGGCTGATGTT 58.269 50.000 0.00 0.00 0.00 2.71
2572 2634 1.662629 CTCATGTGACGGCTGATGTTC 59.337 52.381 0.00 0.00 0.00 3.18
2573 2635 1.276138 TCATGTGACGGCTGATGTTCT 59.724 47.619 0.00 0.00 0.00 3.01
2574 2636 2.495669 TCATGTGACGGCTGATGTTCTA 59.504 45.455 0.00 0.00 0.00 2.10
2575 2637 3.132824 TCATGTGACGGCTGATGTTCTAT 59.867 43.478 0.00 0.00 0.00 1.98
2576 2638 2.892374 TGTGACGGCTGATGTTCTATG 58.108 47.619 0.00 0.00 0.00 2.23
2577 2639 2.233676 TGTGACGGCTGATGTTCTATGT 59.766 45.455 0.00 0.00 0.00 2.29
2578 2640 2.860735 GTGACGGCTGATGTTCTATGTC 59.139 50.000 0.00 0.00 0.00 3.06
2579 2641 2.760650 TGACGGCTGATGTTCTATGTCT 59.239 45.455 0.00 0.00 0.00 3.41
2580 2642 3.119291 GACGGCTGATGTTCTATGTCTG 58.881 50.000 0.00 0.00 0.00 3.51
2581 2643 2.760650 ACGGCTGATGTTCTATGTCTGA 59.239 45.455 0.00 0.00 0.00 3.27
2582 2644 3.119291 CGGCTGATGTTCTATGTCTGAC 58.881 50.000 0.00 0.00 0.00 3.51
2583 2645 3.462021 GGCTGATGTTCTATGTCTGACC 58.538 50.000 5.17 0.00 0.00 4.02
2584 2646 3.118629 GGCTGATGTTCTATGTCTGACCA 60.119 47.826 5.17 0.00 0.00 4.02
2585 2647 4.444022 GGCTGATGTTCTATGTCTGACCAT 60.444 45.833 5.17 0.07 0.00 3.55
2586 2648 5.221521 GGCTGATGTTCTATGTCTGACCATA 60.222 44.000 5.17 3.10 0.00 2.74
2587 2649 5.925397 GCTGATGTTCTATGTCTGACCATAG 59.075 44.000 5.17 11.76 43.69 2.23
2588 2650 5.847304 TGATGTTCTATGTCTGACCATAGC 58.153 41.667 16.04 8.68 42.59 2.97
2589 2651 4.307443 TGTTCTATGTCTGACCATAGCG 57.693 45.455 16.04 0.00 42.59 4.26
2590 2652 3.699538 TGTTCTATGTCTGACCATAGCGT 59.300 43.478 16.04 0.00 42.59 5.07
2591 2653 3.990318 TCTATGTCTGACCATAGCGTG 57.010 47.619 16.04 0.00 42.59 5.34
2592 2654 2.034685 TCTATGTCTGACCATAGCGTGC 59.965 50.000 16.04 0.00 42.59 5.34
2593 2655 0.536724 ATGTCTGACCATAGCGTGCA 59.463 50.000 5.17 0.00 0.00 4.57
2594 2656 0.108662 TGTCTGACCATAGCGTGCAG 60.109 55.000 5.17 0.00 0.00 4.41
2595 2657 0.173481 GTCTGACCATAGCGTGCAGA 59.827 55.000 0.00 0.00 33.58 4.26
2596 2658 1.114627 TCTGACCATAGCGTGCAGAT 58.885 50.000 0.00 0.00 31.24 2.90
2597 2659 1.202452 TCTGACCATAGCGTGCAGATG 60.202 52.381 0.00 0.00 31.24 2.90
2598 2660 0.179076 TGACCATAGCGTGCAGATGG 60.179 55.000 18.81 18.81 44.84 3.51
2599 2661 0.882042 GACCATAGCGTGCAGATGGG 60.882 60.000 22.28 8.10 43.81 4.00
2600 2662 2.256591 CCATAGCGTGCAGATGGGC 61.257 63.158 14.70 0.00 37.13 5.36
2601 2663 1.227764 CATAGCGTGCAGATGGGCT 60.228 57.895 0.00 0.00 39.44 5.19
2603 2665 2.671370 ATAGCGTGCAGATGGGCTGG 62.671 60.000 0.00 0.00 45.03 4.85
2606 2668 3.731728 GTGCAGATGGGCTGGGGA 61.732 66.667 0.00 0.00 45.03 4.81
2607 2669 2.940467 TGCAGATGGGCTGGGGAA 60.940 61.111 0.00 0.00 45.03 3.97
2608 2670 2.123982 GCAGATGGGCTGGGGAAG 60.124 66.667 0.00 0.00 45.03 3.46
2609 2671 2.683465 GCAGATGGGCTGGGGAAGA 61.683 63.158 0.00 0.00 45.03 2.87
2610 2672 1.225704 CAGATGGGCTGGGGAAGAC 59.774 63.158 0.00 0.00 41.07 3.01
2623 2685 2.206576 GGAAGACCCTGCAACAATCT 57.793 50.000 0.00 0.00 0.00 2.40
2624 2686 2.087646 GGAAGACCCTGCAACAATCTC 58.912 52.381 0.00 0.00 0.00 2.75
2625 2687 2.290577 GGAAGACCCTGCAACAATCTCT 60.291 50.000 0.00 0.00 0.00 3.10
2626 2688 2.777832 AGACCCTGCAACAATCTCTC 57.222 50.000 0.00 0.00 0.00 3.20
2627 2689 2.264455 AGACCCTGCAACAATCTCTCT 58.736 47.619 0.00 0.00 0.00 3.10
2628 2690 3.445008 AGACCCTGCAACAATCTCTCTA 58.555 45.455 0.00 0.00 0.00 2.43
2629 2691 3.196685 AGACCCTGCAACAATCTCTCTAC 59.803 47.826 0.00 0.00 0.00 2.59
2630 2692 3.177228 ACCCTGCAACAATCTCTCTACT 58.823 45.455 0.00 0.00 0.00 2.57
2631 2693 3.055530 ACCCTGCAACAATCTCTCTACTG 60.056 47.826 0.00 0.00 0.00 2.74
2632 2694 3.196469 CCCTGCAACAATCTCTCTACTGA 59.804 47.826 0.00 0.00 0.00 3.41
2633 2695 4.431809 CCTGCAACAATCTCTCTACTGAG 58.568 47.826 0.00 0.00 41.51 3.35
2634 2696 3.854666 TGCAACAATCTCTCTACTGAGC 58.145 45.455 0.00 0.00 40.03 4.26
2635 2697 3.513119 TGCAACAATCTCTCTACTGAGCT 59.487 43.478 0.00 0.00 40.03 4.09
2636 2698 4.706962 TGCAACAATCTCTCTACTGAGCTA 59.293 41.667 0.00 0.00 40.03 3.32
2637 2699 5.040635 GCAACAATCTCTCTACTGAGCTAC 58.959 45.833 0.00 0.00 40.03 3.58
2638 2700 5.163561 GCAACAATCTCTCTACTGAGCTACT 60.164 44.000 0.00 0.00 40.03 2.57
2639 2701 6.627065 GCAACAATCTCTCTACTGAGCTACTT 60.627 42.308 0.00 0.00 40.03 2.24
2640 2702 6.449635 ACAATCTCTCTACTGAGCTACTTG 57.550 41.667 0.00 0.00 40.03 3.16
2641 2703 6.184068 ACAATCTCTCTACTGAGCTACTTGA 58.816 40.000 0.00 0.00 40.03 3.02
2642 2704 6.661377 ACAATCTCTCTACTGAGCTACTTGAA 59.339 38.462 0.00 0.00 40.03 2.69
2643 2705 6.942532 ATCTCTCTACTGAGCTACTTGAAG 57.057 41.667 0.00 0.00 40.03 3.02
2644 2706 6.056090 TCTCTCTACTGAGCTACTTGAAGA 57.944 41.667 0.00 0.00 40.03 2.87
2645 2707 6.658849 TCTCTCTACTGAGCTACTTGAAGAT 58.341 40.000 0.00 0.00 40.03 2.40
2646 2708 6.765989 TCTCTCTACTGAGCTACTTGAAGATC 59.234 42.308 0.00 0.00 40.03 2.75
2647 2709 6.418946 TCTCTACTGAGCTACTTGAAGATCA 58.581 40.000 0.00 0.00 39.47 2.92
2648 2710 6.887002 TCTCTACTGAGCTACTTGAAGATCAA 59.113 38.462 0.00 0.00 41.08 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.037166 TCATCAAATATCTATCAAGGACATCCG 58.963 37.037 0.00 0.00 42.08 4.18
1 2 9.381033 CTCATCAAATATCTATCAAGGACATCC 57.619 37.037 0.00 0.00 0.00 3.51
4 5 9.372189 TCTCTCATCAAATATCTATCAAGGACA 57.628 33.333 0.00 0.00 0.00 4.02
5 6 9.638239 GTCTCTCATCAAATATCTATCAAGGAC 57.362 37.037 0.00 0.00 0.00 3.85
6 7 9.599056 AGTCTCTCATCAAATATCTATCAAGGA 57.401 33.333 0.00 0.00 0.00 3.36
7 8 9.859427 GAGTCTCTCATCAAATATCTATCAAGG 57.141 37.037 0.00 0.00 0.00 3.61
8 9 9.859427 GGAGTCTCTCATCAAATATCTATCAAG 57.141 37.037 0.00 0.00 31.08 3.02
9 10 8.811017 GGGAGTCTCTCATCAAATATCTATCAA 58.189 37.037 0.00 0.00 31.08 2.57
10 11 7.952368 TGGGAGTCTCTCATCAAATATCTATCA 59.048 37.037 0.00 0.00 31.08 2.15
11 12 8.359875 TGGGAGTCTCTCATCAAATATCTATC 57.640 38.462 0.00 0.00 31.08 2.08
12 13 8.592809 GTTGGGAGTCTCTCATCAAATATCTAT 58.407 37.037 2.45 0.00 31.26 1.98
13 14 7.015682 GGTTGGGAGTCTCTCATCAAATATCTA 59.984 40.741 2.45 0.00 31.26 1.98
14 15 6.183361 GGTTGGGAGTCTCTCATCAAATATCT 60.183 42.308 2.45 0.00 31.26 1.98
15 16 5.994668 GGTTGGGAGTCTCTCATCAAATATC 59.005 44.000 2.45 0.00 31.26 1.63
16 17 5.669447 AGGTTGGGAGTCTCTCATCAAATAT 59.331 40.000 2.45 0.00 31.26 1.28
17 18 5.032846 AGGTTGGGAGTCTCTCATCAAATA 58.967 41.667 2.45 0.00 31.26 1.40
18 19 3.848975 AGGTTGGGAGTCTCTCATCAAAT 59.151 43.478 2.45 0.00 31.26 2.32
19 20 3.008375 CAGGTTGGGAGTCTCTCATCAAA 59.992 47.826 2.45 0.00 31.26 2.69
20 21 2.568956 CAGGTTGGGAGTCTCTCATCAA 59.431 50.000 2.45 0.00 31.08 2.57
21 22 2.182827 CAGGTTGGGAGTCTCTCATCA 58.817 52.381 2.45 0.00 31.08 3.07
22 23 2.461695 TCAGGTTGGGAGTCTCTCATC 58.538 52.381 2.45 2.50 31.08 2.92
23 24 2.630889 TCAGGTTGGGAGTCTCTCAT 57.369 50.000 2.45 0.00 31.08 2.90
24 25 2.398754 TTCAGGTTGGGAGTCTCTCA 57.601 50.000 0.00 0.00 31.08 3.27
25 26 3.990959 ATTTCAGGTTGGGAGTCTCTC 57.009 47.619 0.00 0.00 0.00 3.20
26 27 4.223923 CAGTATTTCAGGTTGGGAGTCTCT 59.776 45.833 0.00 0.00 0.00 3.10
27 28 4.508662 CAGTATTTCAGGTTGGGAGTCTC 58.491 47.826 0.00 0.00 0.00 3.36
28 29 3.264450 CCAGTATTTCAGGTTGGGAGTCT 59.736 47.826 0.00 0.00 0.00 3.24
29 30 3.263425 TCCAGTATTTCAGGTTGGGAGTC 59.737 47.826 0.00 0.00 0.00 3.36
30 31 3.009143 GTCCAGTATTTCAGGTTGGGAGT 59.991 47.826 0.00 0.00 0.00 3.85
31 32 3.610911 GTCCAGTATTTCAGGTTGGGAG 58.389 50.000 0.00 0.00 0.00 4.30
32 33 2.027561 CGTCCAGTATTTCAGGTTGGGA 60.028 50.000 0.00 0.00 0.00 4.37
33 34 2.027561 TCGTCCAGTATTTCAGGTTGGG 60.028 50.000 0.00 0.00 0.00 4.12
34 35 3.328382 TCGTCCAGTATTTCAGGTTGG 57.672 47.619 0.00 0.00 0.00 3.77
35 36 4.437390 GCATTCGTCCAGTATTTCAGGTTG 60.437 45.833 0.00 0.00 0.00 3.77
36 37 3.689649 GCATTCGTCCAGTATTTCAGGTT 59.310 43.478 0.00 0.00 0.00 3.50
37 38 3.055094 AGCATTCGTCCAGTATTTCAGGT 60.055 43.478 0.00 0.00 0.00 4.00
38 39 3.535561 AGCATTCGTCCAGTATTTCAGG 58.464 45.455 0.00 0.00 0.00 3.86
39 40 5.352284 AGTAGCATTCGTCCAGTATTTCAG 58.648 41.667 0.00 0.00 0.00 3.02
40 41 5.339008 AGTAGCATTCGTCCAGTATTTCA 57.661 39.130 0.00 0.00 0.00 2.69
41 42 6.663944 AAAGTAGCATTCGTCCAGTATTTC 57.336 37.500 0.00 0.00 0.00 2.17
42 43 7.305474 CAAAAAGTAGCATTCGTCCAGTATTT 58.695 34.615 0.00 0.00 0.00 1.40
43 44 6.128007 CCAAAAAGTAGCATTCGTCCAGTATT 60.128 38.462 0.00 0.00 0.00 1.89
44 45 5.354234 CCAAAAAGTAGCATTCGTCCAGTAT 59.646 40.000 0.00 0.00 0.00 2.12
45 46 4.693566 CCAAAAAGTAGCATTCGTCCAGTA 59.306 41.667 0.00 0.00 0.00 2.74
46 47 3.502211 CCAAAAAGTAGCATTCGTCCAGT 59.498 43.478 0.00 0.00 0.00 4.00
47 48 3.502211 ACCAAAAAGTAGCATTCGTCCAG 59.498 43.478 0.00 0.00 0.00 3.86
48 49 3.482436 ACCAAAAAGTAGCATTCGTCCA 58.518 40.909 0.00 0.00 0.00 4.02
49 50 4.933400 TCTACCAAAAAGTAGCATTCGTCC 59.067 41.667 0.00 0.00 39.71 4.79
50 51 6.073440 TGTTCTACCAAAAAGTAGCATTCGTC 60.073 38.462 0.00 0.00 39.71 4.20
51 52 5.761234 TGTTCTACCAAAAAGTAGCATTCGT 59.239 36.000 0.00 0.00 39.71 3.85
52 53 6.236017 TGTTCTACCAAAAAGTAGCATTCG 57.764 37.500 0.00 0.00 39.71 3.34
53 54 7.816640 TCATGTTCTACCAAAAAGTAGCATTC 58.183 34.615 0.00 0.00 39.71 2.67
54 55 7.094205 CCTCATGTTCTACCAAAAAGTAGCATT 60.094 37.037 0.00 0.00 39.71 3.56
55 56 6.375455 CCTCATGTTCTACCAAAAAGTAGCAT 59.625 38.462 0.00 0.00 39.71 3.79
56 57 5.705441 CCTCATGTTCTACCAAAAAGTAGCA 59.295 40.000 0.00 0.00 39.71 3.49
57 58 5.392057 GCCTCATGTTCTACCAAAAAGTAGC 60.392 44.000 0.00 0.00 39.71 3.58
58 59 5.163854 CGCCTCATGTTCTACCAAAAAGTAG 60.164 44.000 0.00 0.00 40.98 2.57
59 60 4.693566 CGCCTCATGTTCTACCAAAAAGTA 59.306 41.667 0.00 0.00 0.00 2.24
60 61 3.502211 CGCCTCATGTTCTACCAAAAAGT 59.498 43.478 0.00 0.00 0.00 2.66
61 62 3.670627 GCGCCTCATGTTCTACCAAAAAG 60.671 47.826 0.00 0.00 0.00 2.27
62 63 2.227865 GCGCCTCATGTTCTACCAAAAA 59.772 45.455 0.00 0.00 0.00 1.94
63 64 1.810151 GCGCCTCATGTTCTACCAAAA 59.190 47.619 0.00 0.00 0.00 2.44
64 65 1.003118 AGCGCCTCATGTTCTACCAAA 59.997 47.619 2.29 0.00 0.00 3.28
65 66 0.613260 AGCGCCTCATGTTCTACCAA 59.387 50.000 2.29 0.00 0.00 3.67
66 67 0.613260 AAGCGCCTCATGTTCTACCA 59.387 50.000 2.29 0.00 0.00 3.25
67 68 2.596904 TAAGCGCCTCATGTTCTACC 57.403 50.000 2.29 0.00 0.00 3.18
68 69 3.303395 GCAATAAGCGCCTCATGTTCTAC 60.303 47.826 2.29 0.00 0.00 2.59
69 70 2.872245 GCAATAAGCGCCTCATGTTCTA 59.128 45.455 2.29 0.00 0.00 2.10
70 71 1.672881 GCAATAAGCGCCTCATGTTCT 59.327 47.619 2.29 0.00 0.00 3.01
71 72 2.111041 GCAATAAGCGCCTCATGTTC 57.889 50.000 2.29 0.00 0.00 3.18
82 83 5.774498 AAAGGTATGGCTAAGCAATAAGC 57.226 39.130 0.00 0.00 46.19 3.09
83 84 6.770785 TGGTAAAGGTATGGCTAAGCAATAAG 59.229 38.462 0.00 0.00 0.00 1.73
84 85 6.664714 TGGTAAAGGTATGGCTAAGCAATAA 58.335 36.000 0.00 0.00 0.00 1.40
85 86 6.255294 TGGTAAAGGTATGGCTAAGCAATA 57.745 37.500 0.00 0.00 0.00 1.90
86 87 5.124036 TGGTAAAGGTATGGCTAAGCAAT 57.876 39.130 0.00 0.00 0.00 3.56
87 88 4.577988 TGGTAAAGGTATGGCTAAGCAA 57.422 40.909 0.00 0.00 0.00 3.91
88 89 4.788925 ATGGTAAAGGTATGGCTAAGCA 57.211 40.909 0.00 0.00 0.00 3.91
89 90 6.465439 AAAATGGTAAAGGTATGGCTAAGC 57.535 37.500 0.00 0.00 0.00 3.09
90 91 8.747538 ACTAAAATGGTAAAGGTATGGCTAAG 57.252 34.615 0.00 0.00 0.00 2.18
172 173 9.880157 GTGTAATGGGTTAGACTCACTTTATTA 57.120 33.333 0.00 0.00 27.00 0.98
173 174 8.380099 TGTGTAATGGGTTAGACTCACTTTATT 58.620 33.333 0.00 0.00 35.66 1.40
174 175 7.913789 TGTGTAATGGGTTAGACTCACTTTAT 58.086 34.615 0.00 0.00 35.66 1.40
175 176 7.305813 TGTGTAATGGGTTAGACTCACTTTA 57.694 36.000 0.00 0.00 35.66 1.85
176 177 6.182507 TGTGTAATGGGTTAGACTCACTTT 57.817 37.500 0.00 0.00 35.66 2.66
177 178 5.818678 TGTGTAATGGGTTAGACTCACTT 57.181 39.130 0.00 0.00 35.66 3.16
178 179 7.676683 ATATGTGTAATGGGTTAGACTCACT 57.323 36.000 0.00 0.00 35.66 3.41
179 180 9.477484 CTAATATGTGTAATGGGTTAGACTCAC 57.523 37.037 0.00 0.00 35.66 3.51
180 181 9.209048 ACTAATATGTGTAATGGGTTAGACTCA 57.791 33.333 0.00 0.00 35.66 3.41
216 217 9.949174 GCCTAAAATTTCAAACAATTTTCACAT 57.051 25.926 7.27 0.00 42.68 3.21
217 218 8.401709 GGCCTAAAATTTCAAACAATTTTCACA 58.598 29.630 7.27 0.00 42.68 3.58
218 219 8.401709 TGGCCTAAAATTTCAAACAATTTTCAC 58.598 29.630 3.32 0.81 42.68 3.18
219 220 8.401709 GTGGCCTAAAATTTCAAACAATTTTCA 58.598 29.630 3.32 0.00 42.68 2.69
220 221 8.401709 TGTGGCCTAAAATTTCAAACAATTTTC 58.598 29.630 3.32 0.00 42.68 2.29
221 222 8.286191 TGTGGCCTAAAATTTCAAACAATTTT 57.714 26.923 3.32 8.69 44.72 1.82
222 223 7.872113 TGTGGCCTAAAATTTCAAACAATTT 57.128 28.000 3.32 0.00 37.86 1.82
223 224 8.462589 AATGTGGCCTAAAATTTCAAACAATT 57.537 26.923 3.32 0.00 0.00 2.32
224 225 8.462589 AAATGTGGCCTAAAATTTCAAACAAT 57.537 26.923 3.32 0.00 0.00 2.71
225 226 7.872113 AAATGTGGCCTAAAATTTCAAACAA 57.128 28.000 3.32 0.00 0.00 2.83
226 227 7.201767 CCAAAATGTGGCCTAAAATTTCAAACA 60.202 33.333 3.32 0.00 41.72 2.83
227 228 7.138081 CCAAAATGTGGCCTAAAATTTCAAAC 58.862 34.615 3.32 0.00 41.72 2.93
228 229 7.269477 CCAAAATGTGGCCTAAAATTTCAAA 57.731 32.000 3.32 0.00 41.72 2.69
229 230 6.874288 CCAAAATGTGGCCTAAAATTTCAA 57.126 33.333 3.32 0.00 41.72 2.69
243 244 2.869192 CCCGGACAAAAACCAAAATGTG 59.131 45.455 0.73 0.00 0.00 3.21
244 245 2.158885 CCCCGGACAAAAACCAAAATGT 60.159 45.455 0.73 0.00 0.00 2.71
245 246 2.488952 CCCCGGACAAAAACCAAAATG 58.511 47.619 0.73 0.00 0.00 2.32
246 247 1.202710 GCCCCGGACAAAAACCAAAAT 60.203 47.619 0.73 0.00 0.00 1.82
247 248 0.178301 GCCCCGGACAAAAACCAAAA 59.822 50.000 0.73 0.00 0.00 2.44
248 249 1.687297 GGCCCCGGACAAAAACCAAA 61.687 55.000 0.73 0.00 0.00 3.28
249 250 2.134933 GGCCCCGGACAAAAACCAA 61.135 57.895 0.73 0.00 0.00 3.67
250 251 2.522193 GGCCCCGGACAAAAACCA 60.522 61.111 0.73 0.00 0.00 3.67
251 252 3.307906 GGGCCCCGGACAAAAACC 61.308 66.667 12.23 0.00 0.00 3.27
252 253 3.307906 GGGGCCCCGGACAAAAAC 61.308 66.667 29.50 0.00 0.00 2.43
253 254 4.624628 GGGGGCCCCGGACAAAAA 62.625 66.667 35.11 0.00 36.85 1.94
270 271 1.067635 CAGGGCCGTCTCCAAAAATTG 60.068 52.381 0.00 0.00 0.00 2.32
271 272 1.203001 TCAGGGCCGTCTCCAAAAATT 60.203 47.619 0.00 0.00 0.00 1.82
272 273 0.404040 TCAGGGCCGTCTCCAAAAAT 59.596 50.000 0.00 0.00 0.00 1.82
273 274 0.404040 ATCAGGGCCGTCTCCAAAAA 59.596 50.000 0.00 0.00 0.00 1.94
274 275 1.209504 CTATCAGGGCCGTCTCCAAAA 59.790 52.381 0.00 0.00 0.00 2.44
275 276 0.830648 CTATCAGGGCCGTCTCCAAA 59.169 55.000 0.00 0.00 0.00 3.28
276 277 1.048724 CCTATCAGGGCCGTCTCCAA 61.049 60.000 0.00 0.00 0.00 3.53
277 278 1.457643 CCTATCAGGGCCGTCTCCA 60.458 63.158 0.00 0.00 0.00 3.86
278 279 3.460995 CCTATCAGGGCCGTCTCC 58.539 66.667 0.00 0.00 0.00 3.71
287 288 2.106511 CCATTGTGTACCCCCTATCAGG 59.893 54.545 0.00 0.00 34.30 3.86
288 289 3.045634 TCCATTGTGTACCCCCTATCAG 58.954 50.000 0.00 0.00 0.00 2.90
289 290 3.138123 TCCATTGTGTACCCCCTATCA 57.862 47.619 0.00 0.00 0.00 2.15
560 570 0.918619 CTAATGACCGTTGTACCGCG 59.081 55.000 0.00 0.00 0.00 6.46
568 578 0.988832 TTGGGCTCCTAATGACCGTT 59.011 50.000 0.00 0.00 0.00 4.44
587 597 6.384305 AGAAGTGGTGCAAGTATAAGACCTAT 59.616 38.462 0.00 0.00 0.00 2.57
596 606 4.373156 AAGGAAGAAGTGGTGCAAGTAT 57.627 40.909 0.00 0.00 0.00 2.12
617 627 0.592637 TCTCCGACGACGCTAAACAA 59.407 50.000 0.64 0.00 38.29 2.83
750 760 3.353836 GCCGGACATGCACAACGT 61.354 61.111 5.05 0.00 0.00 3.99
797 807 0.232303 GCACCAAGTTCGAGAACACG 59.768 55.000 17.00 7.91 43.47 4.49
902 912 2.746359 CTCCTCCCCATCGCCATC 59.254 66.667 0.00 0.00 0.00 3.51
922 932 2.894126 TCTCTTCTCTCACTGTCAACCC 59.106 50.000 0.00 0.00 0.00 4.11
962 973 4.289672 CCTATATTTACTCACCCTGCCCAT 59.710 45.833 0.00 0.00 0.00 4.00
1071 1085 3.598299 TCGATCTGCACACAATTCATGA 58.402 40.909 0.00 0.00 0.00 3.07
1149 1163 3.076916 GCATTGGGTGAAGGGGCC 61.077 66.667 0.00 0.00 0.00 5.80
1253 1273 2.671177 CGACGCTTGTTGCTGGGAG 61.671 63.158 0.00 0.00 40.11 4.30
1254 1274 2.664851 CGACGCTTGTTGCTGGGA 60.665 61.111 0.00 0.00 40.11 4.37
1304 1324 3.281727 TGACCTTGCAGAAGTGAGTTT 57.718 42.857 0.00 0.00 0.00 2.66
1338 1358 0.682209 GCATGGGGATGCACTCAAGT 60.682 55.000 2.14 0.00 46.25 3.16
1358 1378 0.108585 GTGCTTGGTGAAGTCCAGGA 59.891 55.000 0.00 0.00 38.80 3.86
1386 1406 1.006102 CTTGAACTCCGTCGGCACT 60.006 57.895 6.34 0.00 0.00 4.40
1593 1613 1.300620 CTTCCCGCACTCGTTGACA 60.301 57.895 0.00 0.00 0.00 3.58
1622 1642 1.945354 CTACTCCTTGGCGGCGAAGA 61.945 60.000 23.83 9.56 0.00 2.87
1647 1667 2.234908 ACTATGCTCGAAAGAAGTGGCT 59.765 45.455 0.00 0.00 41.32 4.75
1653 1673 6.975197 CAGACTTGATACTATGCTCGAAAGAA 59.025 38.462 0.00 0.00 41.32 2.52
1667 1687 8.856490 AAACATGTTCAAAACAGACTTGATAC 57.144 30.769 12.39 0.00 45.95 2.24
1679 1699 9.416794 ACGCATAAATCATAAACATGTTCAAAA 57.583 25.926 12.39 0.00 0.00 2.44
1696 1716 9.109393 AGTATCATAACAGTTCAACGCATAAAT 57.891 29.630 0.00 0.00 0.00 1.40
1780 1812 0.106708 ACCACACTTCGACAGCACAT 59.893 50.000 0.00 0.00 0.00 3.21
1829 1861 1.087202 TGCAACGTCTGGTGTGTGAC 61.087 55.000 0.00 0.00 0.00 3.67
1841 1873 3.248841 TCGTGTTTGATTGTATGCAACGT 59.751 39.130 0.00 0.00 37.44 3.99
1854 1886 2.254546 ACTCAAGGCATCGTGTTTGA 57.745 45.000 0.00 0.00 0.00 2.69
1862 1894 5.048083 TGTTAATGGACAAACTCAAGGCATC 60.048 40.000 0.00 0.00 0.00 3.91
1881 1913 7.442969 CCTAGTGTTTGGTTGTCTGTATGTTAA 59.557 37.037 0.00 0.00 0.00 2.01
1888 1920 2.092646 TGCCTAGTGTTTGGTTGTCTGT 60.093 45.455 0.00 0.00 0.00 3.41
1904 1936 0.685097 GGACAGAACCACACTGCCTA 59.315 55.000 0.00 0.00 38.74 3.93
1993 2025 1.644786 GCTCGAACCCGAAACCATGG 61.645 60.000 11.19 11.19 45.04 3.66
1994 2026 1.644786 GGCTCGAACCCGAAACCATG 61.645 60.000 0.00 0.00 45.04 3.66
1995 2027 1.376812 GGCTCGAACCCGAAACCAT 60.377 57.895 0.00 0.00 45.04 3.55
1996 2028 2.031465 GGCTCGAACCCGAAACCA 59.969 61.111 0.00 0.00 45.04 3.67
2134 2173 2.376109 GAGAGGAAGGTATGGACACGA 58.624 52.381 0.00 0.00 0.00 4.35
2136 2175 1.409427 CGGAGAGGAAGGTATGGACAC 59.591 57.143 0.00 0.00 0.00 3.67
2144 2183 2.042843 ATCGGCGGAGAGGAAGGT 60.043 61.111 7.21 0.00 0.00 3.50
2269 2310 2.743928 CGTTGAGGCTGAGGTGGC 60.744 66.667 0.00 0.00 0.00 5.01
2272 2313 1.837051 TGGACGTTGAGGCTGAGGT 60.837 57.895 0.00 0.00 0.00 3.85
2283 2324 1.913762 CTGGGAGGAGGTGGACGTT 60.914 63.158 0.00 0.00 0.00 3.99
2290 2331 2.360980 CGGAGACTGGGAGGAGGT 59.639 66.667 0.00 0.00 0.00 3.85
2309 2371 7.278424 GTGAGAATTGAGAATTTGAGAGAGAGG 59.722 40.741 0.00 0.00 0.00 3.69
2314 2376 7.104939 AGAGGTGAGAATTGAGAATTTGAGAG 58.895 38.462 0.00 0.00 0.00 3.20
2319 2381 7.256494 AGAGAGAGGTGAGAATTGAGAATTT 57.744 36.000 0.00 0.00 0.00 1.82
2320 2382 6.872585 AGAGAGAGGTGAGAATTGAGAATT 57.127 37.500 0.00 0.00 0.00 2.17
2321 2383 9.827198 ATATAGAGAGAGGTGAGAATTGAGAAT 57.173 33.333 0.00 0.00 0.00 2.40
2322 2384 9.295825 GATATAGAGAGAGGTGAGAATTGAGAA 57.704 37.037 0.00 0.00 0.00 2.87
2323 2385 8.668653 AGATATAGAGAGAGGTGAGAATTGAGA 58.331 37.037 0.00 0.00 0.00 3.27
2324 2386 8.868522 AGATATAGAGAGAGGTGAGAATTGAG 57.131 38.462 0.00 0.00 0.00 3.02
2325 2387 8.443979 TGAGATATAGAGAGAGGTGAGAATTGA 58.556 37.037 0.00 0.00 0.00 2.57
2326 2388 8.634335 TGAGATATAGAGAGAGGTGAGAATTG 57.366 38.462 0.00 0.00 0.00 2.32
2334 2396 6.454223 AGAAGCTGAGATATAGAGAGAGGT 57.546 41.667 0.00 0.00 0.00 3.85
2345 2407 3.369175 TGCTGAAGGAGAAGCTGAGATA 58.631 45.455 0.00 0.00 40.21 1.98
2367 2429 1.025812 CCGCGACAGTATCCTTCTCT 58.974 55.000 8.23 0.00 0.00 3.10
2368 2430 0.739561 ACCGCGACAGTATCCTTCTC 59.260 55.000 8.23 0.00 0.00 2.87
2370 2432 2.857592 TAACCGCGACAGTATCCTTC 57.142 50.000 8.23 0.00 0.00 3.46
2371 2433 3.814005 ATTAACCGCGACAGTATCCTT 57.186 42.857 8.23 0.00 0.00 3.36
2372 2434 3.814005 AATTAACCGCGACAGTATCCT 57.186 42.857 8.23 0.00 0.00 3.24
2373 2435 5.693104 TGATTAATTAACCGCGACAGTATCC 59.307 40.000 8.23 0.00 0.00 2.59
2374 2436 6.758593 TGATTAATTAACCGCGACAGTATC 57.241 37.500 8.23 0.67 0.00 2.24
2375 2437 7.542534 TTTGATTAATTAACCGCGACAGTAT 57.457 32.000 8.23 0.00 0.00 2.12
2383 2445 5.684184 GGAACGGATTTGATTAATTAACCGC 59.316 40.000 17.72 7.00 42.29 5.68
2408 2470 1.515521 CCTCACCTGCAAAACGGACC 61.516 60.000 0.00 0.00 0.00 4.46
2411 2473 0.817634 TCACCTCACCTGCAAAACGG 60.818 55.000 0.00 0.00 0.00 4.44
2432 2494 1.529244 AGCGGCTTCAAGCAAAGGT 60.529 52.632 12.53 4.67 44.75 3.50
2455 2517 6.225981 TCATCTAGTACTCCGTACTGTACA 57.774 41.667 17.35 0.00 46.99 2.90
2459 2521 6.935771 AGGTAATCATCTAGTACTCCGTACTG 59.064 42.308 14.99 6.97 46.99 2.74
2461 2523 7.308469 CCAAGGTAATCATCTAGTACTCCGTAC 60.308 44.444 0.00 0.00 39.10 3.67
2462 2524 6.713903 CCAAGGTAATCATCTAGTACTCCGTA 59.286 42.308 0.00 0.00 0.00 4.02
2463 2525 5.535406 CCAAGGTAATCATCTAGTACTCCGT 59.465 44.000 0.00 0.00 0.00 4.69
2464 2526 5.047943 CCCAAGGTAATCATCTAGTACTCCG 60.048 48.000 0.00 0.00 0.00 4.63
2465 2527 6.075984 TCCCAAGGTAATCATCTAGTACTCC 58.924 44.000 0.00 0.00 0.00 3.85
2466 2528 7.310113 CCATCCCAAGGTAATCATCTAGTACTC 60.310 44.444 0.00 0.00 0.00 2.59
2467 2529 6.498651 CCATCCCAAGGTAATCATCTAGTACT 59.501 42.308 0.00 0.00 0.00 2.73
2468 2530 6.295916 CCCATCCCAAGGTAATCATCTAGTAC 60.296 46.154 0.00 0.00 0.00 2.73
2470 2532 4.599241 CCCATCCCAAGGTAATCATCTAGT 59.401 45.833 0.00 0.00 0.00 2.57
2471 2533 4.846367 TCCCATCCCAAGGTAATCATCTAG 59.154 45.833 0.00 0.00 0.00 2.43
2472 2534 4.838403 TCCCATCCCAAGGTAATCATCTA 58.162 43.478 0.00 0.00 0.00 1.98
2473 2535 3.680169 TCCCATCCCAAGGTAATCATCT 58.320 45.455 0.00 0.00 0.00 2.90
2474 2536 4.664688 ATCCCATCCCAAGGTAATCATC 57.335 45.455 0.00 0.00 0.00 2.92
2475 2537 5.014544 CACTATCCCATCCCAAGGTAATCAT 59.985 44.000 0.00 0.00 0.00 2.45
2476 2538 4.350816 CACTATCCCATCCCAAGGTAATCA 59.649 45.833 0.00 0.00 0.00 2.57
2477 2539 4.597507 TCACTATCCCATCCCAAGGTAATC 59.402 45.833 0.00 0.00 0.00 1.75
2478 2540 4.577096 TCACTATCCCATCCCAAGGTAAT 58.423 43.478 0.00 0.00 0.00 1.89
2479 2541 4.015617 TCACTATCCCATCCCAAGGTAA 57.984 45.455 0.00 0.00 0.00 2.85
2480 2542 3.717507 TCACTATCCCATCCCAAGGTA 57.282 47.619 0.00 0.00 0.00 3.08
2481 2543 2.587060 TCACTATCCCATCCCAAGGT 57.413 50.000 0.00 0.00 0.00 3.50
2484 2546 2.492025 AGCTTCACTATCCCATCCCAA 58.508 47.619 0.00 0.00 0.00 4.12
2486 2548 2.548920 CGAAGCTTCACTATCCCATCCC 60.549 54.545 25.47 0.00 0.00 3.85
2498 2560 1.798223 CGTGGTGAAATCGAAGCTTCA 59.202 47.619 25.47 13.28 0.00 3.02
2500 2562 2.163818 TCGTGGTGAAATCGAAGCTT 57.836 45.000 0.00 0.00 0.00 3.74
2517 2579 1.355796 TTAGCGGCGACCACAATTCG 61.356 55.000 12.98 0.00 39.56 3.34
2541 2603 2.636647 TCACATGAGCAGGTTGTGAA 57.363 45.000 0.00 0.00 44.85 3.18
2554 2616 1.730501 AGAACATCAGCCGTCACATG 58.269 50.000 0.00 0.00 0.00 3.21
2559 2621 3.119291 CAGACATAGAACATCAGCCGTC 58.881 50.000 0.00 0.00 0.00 4.79
2560 2622 2.760650 TCAGACATAGAACATCAGCCGT 59.239 45.455 0.00 0.00 0.00 5.68
2561 2623 3.119291 GTCAGACATAGAACATCAGCCG 58.881 50.000 0.00 0.00 0.00 5.52
2562 2624 3.118629 TGGTCAGACATAGAACATCAGCC 60.119 47.826 2.17 0.00 0.00 4.85
2563 2625 4.128925 TGGTCAGACATAGAACATCAGC 57.871 45.455 2.17 0.00 0.00 4.26
2573 2635 1.754226 TGCACGCTATGGTCAGACATA 59.246 47.619 2.17 0.00 32.39 2.29
2574 2636 0.536724 TGCACGCTATGGTCAGACAT 59.463 50.000 2.17 0.00 34.90 3.06
2575 2637 0.108662 CTGCACGCTATGGTCAGACA 60.109 55.000 2.17 0.00 0.00 3.41
2576 2638 0.173481 TCTGCACGCTATGGTCAGAC 59.827 55.000 0.00 0.00 0.00 3.51
2577 2639 1.114627 ATCTGCACGCTATGGTCAGA 58.885 50.000 0.00 0.00 38.05 3.27
2578 2640 1.215244 CATCTGCACGCTATGGTCAG 58.785 55.000 0.00 0.00 0.00 3.51
2579 2641 0.179076 CCATCTGCACGCTATGGTCA 60.179 55.000 12.95 0.00 36.26 4.02
2580 2642 0.882042 CCCATCTGCACGCTATGGTC 60.882 60.000 17.27 0.00 38.83 4.02
2581 2643 1.146930 CCCATCTGCACGCTATGGT 59.853 57.895 17.27 0.00 38.83 3.55
2582 2644 2.256591 GCCCATCTGCACGCTATGG 61.257 63.158 13.79 13.79 39.95 2.74
2583 2645 1.227764 AGCCCATCTGCACGCTATG 60.228 57.895 0.00 0.00 0.00 2.23
2584 2646 1.227764 CAGCCCATCTGCACGCTAT 60.228 57.895 0.00 0.00 35.78 2.97
2585 2647 2.187685 CAGCCCATCTGCACGCTA 59.812 61.111 0.00 0.00 35.78 4.26
2586 2648 4.790962 CCAGCCCATCTGCACGCT 62.791 66.667 0.00 0.00 41.50 5.07
2589 2651 3.286694 TTCCCCAGCCCATCTGCAC 62.287 63.158 0.00 0.00 41.50 4.57
2590 2652 2.940467 TTCCCCAGCCCATCTGCA 60.940 61.111 0.00 0.00 41.50 4.41
2591 2653 2.123982 CTTCCCCAGCCCATCTGC 60.124 66.667 0.00 0.00 41.50 4.26
2592 2654 1.225704 GTCTTCCCCAGCCCATCTG 59.774 63.158 0.00 0.00 42.49 2.90
2593 2655 2.003548 GGTCTTCCCCAGCCCATCT 61.004 63.158 0.00 0.00 0.00 2.90
2594 2656 2.597903 GGTCTTCCCCAGCCCATC 59.402 66.667 0.00 0.00 0.00 3.51
2604 2666 2.087646 GAGATTGTTGCAGGGTCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
2605 2667 3.006247 GAGAGATTGTTGCAGGGTCTTC 58.994 50.000 0.00 0.00 0.00 2.87
2606 2668 2.641815 AGAGAGATTGTTGCAGGGTCTT 59.358 45.455 0.00 0.00 0.00 3.01
2607 2669 2.264455 AGAGAGATTGTTGCAGGGTCT 58.736 47.619 0.00 0.00 0.00 3.85
2608 2670 2.777832 AGAGAGATTGTTGCAGGGTC 57.222 50.000 0.00 0.00 0.00 4.46
2609 2671 3.055530 CAGTAGAGAGATTGTTGCAGGGT 60.056 47.826 0.00 0.00 0.00 4.34
2610 2672 3.196469 TCAGTAGAGAGATTGTTGCAGGG 59.804 47.826 0.00 0.00 0.00 4.45
2611 2673 4.431809 CTCAGTAGAGAGATTGTTGCAGG 58.568 47.826 0.00 0.00 44.98 4.85
2612 2674 3.864583 GCTCAGTAGAGAGATTGTTGCAG 59.135 47.826 0.00 0.00 44.98 4.41
2613 2675 3.513119 AGCTCAGTAGAGAGATTGTTGCA 59.487 43.478 0.00 0.00 44.98 4.08
2614 2676 4.122143 AGCTCAGTAGAGAGATTGTTGC 57.878 45.455 0.00 0.00 44.98 4.17
2615 2677 6.449635 AGTAGCTCAGTAGAGAGATTGTTG 57.550 41.667 0.00 0.00 44.98 3.33
2616 2678 6.661377 TCAAGTAGCTCAGTAGAGAGATTGTT 59.339 38.462 0.00 0.00 44.98 2.83
2617 2679 6.184068 TCAAGTAGCTCAGTAGAGAGATTGT 58.816 40.000 0.00 0.00 44.98 2.71
2618 2680 6.691754 TCAAGTAGCTCAGTAGAGAGATTG 57.308 41.667 0.00 0.00 44.98 2.67
2619 2681 7.116075 TCTTCAAGTAGCTCAGTAGAGAGATT 58.884 38.462 0.00 0.00 44.98 2.40
2620 2682 6.658849 TCTTCAAGTAGCTCAGTAGAGAGAT 58.341 40.000 0.00 0.00 44.98 2.75
2621 2683 6.056090 TCTTCAAGTAGCTCAGTAGAGAGA 57.944 41.667 0.00 0.00 44.98 3.10
2622 2684 6.542005 TGATCTTCAAGTAGCTCAGTAGAGAG 59.458 42.308 0.00 0.00 44.98 3.20
2623 2685 6.418946 TGATCTTCAAGTAGCTCAGTAGAGA 58.581 40.000 0.00 0.00 44.98 3.10
2624 2686 6.691754 TGATCTTCAAGTAGCTCAGTAGAG 57.308 41.667 0.00 0.00 44.96 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.