Multiple sequence alignment - TraesCS6B01G379600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G379600 chr6B 100.000 4336 0 0 1 4336 654736585 654732250 0.000000e+00 8008.0
1 TraesCS6B01G379600 chr6B 100.000 34 0 0 4626 4659 654731960 654731927 3.890000e-06 63.9
2 TraesCS6B01G379600 chr6A 91.999 4012 145 70 1 3946 579441007 579437106 0.000000e+00 5469.0
3 TraesCS6B01G379600 chr6A 91.489 94 2 1 4241 4334 493506225 493506138 1.760000e-24 124.0
4 TraesCS6B01G379600 chr6A 100.000 31 0 0 4626 4656 3619883 3619913 1.810000e-04 58.4
5 TraesCS6B01G379600 chr6D 90.848 3868 187 71 60 3858 433479649 433475880 0.000000e+00 5027.0
6 TraesCS6B01G379600 chr6D 90.308 681 35 10 1 652 433480324 433479646 0.000000e+00 863.0
7 TraesCS6B01G379600 chr6D 90.123 81 2 3 3856 3936 433475733 433475659 2.970000e-17 100.0
8 TraesCS6B01G379600 chr7A 85.450 1244 140 20 2162 3365 108237644 108236402 0.000000e+00 1256.0
9 TraesCS6B01G379600 chr7A 81.516 541 87 10 1044 1576 108238608 108238073 2.570000e-117 433.0
10 TraesCS6B01G379600 chr7B 85.370 1244 141 20 2162 3365 61910144 61908902 0.000000e+00 1251.0
11 TraesCS6B01G379600 chr7B 83.299 485 79 2 1044 1527 61911105 61910622 3.310000e-121 446.0
12 TraesCS6B01G379600 chr7D 85.004 1247 143 23 2162 3365 104091829 104090584 0.000000e+00 1227.0
13 TraesCS6B01G379600 chr7D 82.716 486 80 4 1044 1527 104092790 104092307 3.330000e-116 429.0
14 TraesCS6B01G379600 chr7D 89.503 181 15 2 4058 4237 98631211 98631388 4.690000e-55 226.0
15 TraesCS6B01G379600 chr7D 73.347 484 97 24 2682 3137 46839580 46839101 2.900000e-32 150.0
16 TraesCS6B01G379600 chr3D 78.732 1199 211 32 2170 3331 283316240 283317431 0.000000e+00 761.0
17 TraesCS6B01G379600 chr3D 100.000 31 0 0 4626 4656 27687196 27687226 1.810000e-04 58.4
18 TraesCS6B01G379600 chr3B 78.565 1199 213 32 2170 3331 377424470 377425661 0.000000e+00 750.0
19 TraesCS6B01G379600 chr3A 78.148 1199 218 32 2170 3331 370239450 370240641 0.000000e+00 723.0
20 TraesCS6B01G379600 chr2D 90.710 183 13 4 4058 4237 547787104 547787285 1.680000e-59 241.0
21 TraesCS6B01G379600 chr2D 88.333 180 18 3 4060 4237 103068177 103068355 3.650000e-51 213.0
22 TraesCS6B01G379600 chr2A 89.071 183 15 4 4060 4240 650601679 650601500 6.070000e-54 222.0
23 TraesCS6B01G379600 chr2A 100.000 31 0 0 4626 4656 1891096 1891126 1.810000e-04 58.4
24 TraesCS6B01G379600 chr2A 100.000 31 0 0 4626 4656 11195303 11195333 1.810000e-04 58.4
25 TraesCS6B01G379600 chr2B 88.525 183 18 3 4060 4240 720586569 720586388 7.850000e-53 219.0
26 TraesCS6B01G379600 chr1D 88.889 180 17 3 4060 4237 101104530 101104708 7.850000e-53 219.0
27 TraesCS6B01G379600 chr1D 100.000 31 0 0 4626 4656 379466764 379466734 1.810000e-04 58.4
28 TraesCS6B01G379600 chrUn 88.398 181 16 4 4060 4237 63609938 63610116 3.650000e-51 213.0
29 TraesCS6B01G379600 chr1B 87.978 183 19 3 4060 4240 629677572 629677391 3.650000e-51 213.0
30 TraesCS6B01G379600 chr1A 88.043 184 17 4 4060 4240 29008519 29008338 3.650000e-51 213.0
31 TraesCS6B01G379600 chr5A 96.629 89 3 0 4241 4329 125080904 125080992 1.040000e-31 148.0
32 TraesCS6B01G379600 chr5D 100.000 31 0 0 4626 4656 227774258 227774288 1.810000e-04 58.4
33 TraesCS6B01G379600 chr5D 100.000 31 0 0 4626 4656 499260661 499260691 1.810000e-04 58.4
34 TraesCS6B01G379600 chr4A 100.000 31 0 0 4626 4656 567037259 567037229 1.810000e-04 58.4
35 TraesCS6B01G379600 chr4A 100.000 29 0 0 2735 2763 115788505 115788533 2.000000e-03 54.7
36 TraesCS6B01G379600 chr5B 100.000 29 0 0 4630 4658 688519618 688519590 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G379600 chr6B 654731927 654736585 4658 True 4035.950000 8008 100.000000 1 4659 2 chr6B.!!$R1 4658
1 TraesCS6B01G379600 chr6A 579437106 579441007 3901 True 5469.000000 5469 91.999000 1 3946 1 chr6A.!!$R2 3945
2 TraesCS6B01G379600 chr6D 433475659 433480324 4665 True 1996.666667 5027 90.426333 1 3936 3 chr6D.!!$R1 3935
3 TraesCS6B01G379600 chr7A 108236402 108238608 2206 True 844.500000 1256 83.483000 1044 3365 2 chr7A.!!$R1 2321
4 TraesCS6B01G379600 chr7B 61908902 61911105 2203 True 848.500000 1251 84.334500 1044 3365 2 chr7B.!!$R1 2321
5 TraesCS6B01G379600 chr7D 104090584 104092790 2206 True 828.000000 1227 83.860000 1044 3365 2 chr7D.!!$R2 2321
6 TraesCS6B01G379600 chr3D 283316240 283317431 1191 False 761.000000 761 78.732000 2170 3331 1 chr3D.!!$F2 1161
7 TraesCS6B01G379600 chr3B 377424470 377425661 1191 False 750.000000 750 78.565000 2170 3331 1 chr3B.!!$F1 1161
8 TraesCS6B01G379600 chr3A 370239450 370240641 1191 False 723.000000 723 78.148000 2170 3331 1 chr3A.!!$F1 1161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1553 0.174617 GGAGGACCAAAGCGAGAGAG 59.825 60.0 0.0 0.0 35.97 3.20 F
2080 2802 0.104855 GTACCTCCATCATGCGAGCA 59.895 55.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2647 3433 1.002868 CACCTCCTGCTGGAACTGG 60.003 63.158 13.89 13.43 42.66 4.00 R
4002 4975 0.038166 ATGGACAATGCCAGTTCGGT 59.962 50.000 3.15 0.00 42.15 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.945191 TGGTGCATGATTTCTGAATTCTACA 59.055 36.000 7.05 6.26 0.00 2.74
121 122 8.292448 ACAAATAGTGTCACTAAATTGCAAGAG 58.708 33.333 26.33 4.77 34.38 2.85
269 274 5.560724 CCAGTCTCACCTATTCTTTCCAAA 58.439 41.667 0.00 0.00 0.00 3.28
434 455 0.320374 TGTAGACTTGAGTTGGGCCG 59.680 55.000 0.00 0.00 0.00 6.13
553 578 3.577848 TGGAACAATGCTTGGTGCTAAAT 59.422 39.130 6.91 0.00 39.69 1.40
554 579 3.928375 GGAACAATGCTTGGTGCTAAATG 59.072 43.478 0.00 0.00 43.37 2.32
555 580 4.559153 GAACAATGCTTGGTGCTAAATGT 58.441 39.130 1.84 0.00 43.37 2.71
586 615 3.101437 TGTTACTGGGTGATGACCGTAT 58.899 45.455 0.00 0.00 44.23 3.06
592 621 3.578716 CTGGGTGATGACCGTATAAGGAT 59.421 47.826 12.02 0.00 44.23 3.24
595 624 4.755123 GGGTGATGACCGTATAAGGATTTG 59.245 45.833 12.02 0.00 44.23 2.32
631 661 4.261197 GTTTGCCAAACTACTGAAGACCAG 60.261 45.833 12.98 0.00 42.04 4.00
658 1259 5.357257 AGTTTGTCTGTTGATAACGTCTGT 58.643 37.500 0.00 0.00 0.00 3.41
667 1268 6.893759 TGTTGATAACGTCTGTTTTGTATGG 58.106 36.000 0.00 0.00 39.54 2.74
675 1276 4.517453 CGTCTGTTTTGTATGGGGAAAGAA 59.483 41.667 0.00 0.00 0.00 2.52
719 1324 2.119457 CGCAAACTCAGCTGGAAAAAC 58.881 47.619 15.13 0.00 0.00 2.43
839 1444 2.443016 CTCCTCCCCTCCTGACCG 60.443 72.222 0.00 0.00 0.00 4.79
867 1472 2.175499 CCTCCCTTGGCAATCTTCCATA 59.825 50.000 0.00 0.00 32.92 2.74
871 1476 2.621998 CCTTGGCAATCTTCCATAGCTG 59.378 50.000 0.00 0.00 32.92 4.24
914 1526 2.557924 CAGGAGCATAGCCTAGAGACAG 59.442 54.545 0.00 0.00 33.51 3.51
915 1527 2.445145 AGGAGCATAGCCTAGAGACAGA 59.555 50.000 0.00 0.00 32.92 3.41
916 1528 2.556622 GGAGCATAGCCTAGAGACAGAC 59.443 54.545 0.00 0.00 0.00 3.51
917 1529 3.218453 GAGCATAGCCTAGAGACAGACA 58.782 50.000 0.00 0.00 0.00 3.41
934 1546 2.239907 AGACATTAGGGAGGACCAAAGC 59.760 50.000 0.00 0.00 43.89 3.51
941 1553 0.174617 GGAGGACCAAAGCGAGAGAG 59.825 60.000 0.00 0.00 35.97 3.20
942 1554 0.174617 GAGGACCAAAGCGAGAGAGG 59.825 60.000 0.00 0.00 0.00 3.69
946 1558 1.261238 ACCAAAGCGAGAGAGGGAGG 61.261 60.000 0.00 0.00 0.00 4.30
955 1567 2.666317 GAGAGAGGGAGGAGAAAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
966 1588 2.102925 GGAGAAAGGAGGCTGATCTGAG 59.897 54.545 3.42 0.00 0.00 3.35
1399 2021 2.029844 AGCTTCGTCCGCTTCAAGC 61.030 57.895 0.00 0.00 41.38 4.01
1464 2086 1.122849 GCGTCTACGTCGTCAACAAA 58.877 50.000 0.00 0.00 42.22 2.83
1716 2365 8.092521 ACTTCATCATGTAAGTCTTGTTTCTG 57.907 34.615 0.00 0.00 30.08 3.02
1729 2378 0.732880 GTTTCTGTGCTCGCTCGCTA 60.733 55.000 0.00 0.00 0.00 4.26
1748 2401 0.324614 AGTTCATGCATGGACGGACA 59.675 50.000 28.36 5.21 41.26 4.02
1749 2402 1.065199 AGTTCATGCATGGACGGACAT 60.065 47.619 28.36 11.30 41.26 3.06
2076 2798 1.956170 GCGGTACCTCCATCATGCG 60.956 63.158 10.90 0.00 35.57 4.73
2078 2800 0.319040 CGGTACCTCCATCATGCGAG 60.319 60.000 10.90 0.00 35.57 5.03
2079 2801 0.601311 GGTACCTCCATCATGCGAGC 60.601 60.000 4.06 0.00 35.97 5.03
2080 2802 0.104855 GTACCTCCATCATGCGAGCA 59.895 55.000 0.00 0.00 0.00 4.26
2081 2803 0.829990 TACCTCCATCATGCGAGCAA 59.170 50.000 0.57 0.00 0.00 3.91
2082 2804 0.745845 ACCTCCATCATGCGAGCAAC 60.746 55.000 0.57 0.00 0.00 4.17
2083 2805 0.745486 CCTCCATCATGCGAGCAACA 60.745 55.000 0.57 0.00 0.00 3.33
2084 2806 0.376152 CTCCATCATGCGAGCAACAC 59.624 55.000 0.57 0.00 0.00 3.32
2085 2807 1.061411 CCATCATGCGAGCAACACG 59.939 57.895 0.57 0.00 0.00 4.49
2125 2847 3.317430 CCTGCCTGCCATTAATCTTTCTC 59.683 47.826 0.00 0.00 0.00 2.87
2126 2848 2.945008 TGCCTGCCATTAATCTTTCTCG 59.055 45.455 0.00 0.00 0.00 4.04
2783 3569 1.536073 CCTGGACGACTGCCTCTTCA 61.536 60.000 0.00 0.00 0.00 3.02
2784 3570 0.318441 CTGGACGACTGCCTCTTCAA 59.682 55.000 0.00 0.00 0.00 2.69
3387 4185 3.299977 CATGATGGGCGGCATGGG 61.300 66.667 12.47 0.00 38.52 4.00
3449 4247 0.811616 CTCCGCCTACATGAGCAACC 60.812 60.000 0.00 0.00 0.00 3.77
3470 4268 2.212900 CTCCATGTCGCAGTCACGGA 62.213 60.000 0.00 0.00 35.34 4.69
3491 4298 4.201802 GGAACGTAAGAAAACCAACACGAA 60.202 41.667 0.00 0.00 43.62 3.85
3492 4299 5.488645 AACGTAAGAAAACCAACACGAAT 57.511 34.783 0.00 0.00 43.62 3.34
3501 4308 2.279741 ACCAACACGAATGATCATCCG 58.720 47.619 13.23 13.23 0.00 4.18
3527 4334 1.280133 TCTCATCCTCCTTGTTGCAGG 59.720 52.381 0.00 0.00 34.86 4.85
3528 4335 1.280133 CTCATCCTCCTTGTTGCAGGA 59.720 52.381 0.00 0.00 41.00 3.86
3529 4336 1.704628 TCATCCTCCTTGTTGCAGGAA 59.295 47.619 0.00 0.00 42.76 3.36
3530 4337 1.815003 CATCCTCCTTGTTGCAGGAAC 59.185 52.381 0.00 0.00 42.76 3.62
3531 4338 0.250295 TCCTCCTTGTTGCAGGAACG 60.250 55.000 0.00 0.00 42.76 3.95
3537 4344 0.865111 TTGTTGCAGGAACGACGATG 59.135 50.000 0.00 0.00 37.38 3.84
3561 4368 2.095853 CACTGACACGGGTAAATCATGC 59.904 50.000 0.00 0.00 0.00 4.06
3675 4491 3.392595 GATGCTGCGCTGTGCTTCC 62.393 63.158 16.05 3.37 46.63 3.46
3676 4492 4.933563 TGCTGCGCTGTGCTTCCA 62.934 61.111 16.05 5.91 46.63 3.53
3697 4513 4.272018 CCAAAGTTCTCAGATCATTAGGCG 59.728 45.833 0.00 0.00 0.00 5.52
3698 4514 3.742433 AGTTCTCAGATCATTAGGCGG 57.258 47.619 0.00 0.00 0.00 6.13
3700 4516 3.706594 AGTTCTCAGATCATTAGGCGGAA 59.293 43.478 0.00 0.00 0.00 4.30
3701 4517 4.054671 GTTCTCAGATCATTAGGCGGAAG 58.945 47.826 0.00 0.00 0.00 3.46
3702 4518 3.566351 TCTCAGATCATTAGGCGGAAGA 58.434 45.455 0.00 0.00 0.00 2.87
3703 4519 3.571828 TCTCAGATCATTAGGCGGAAGAG 59.428 47.826 0.00 0.00 0.00 2.85
3704 4520 2.036475 TCAGATCATTAGGCGGAAGAGC 59.964 50.000 0.00 0.00 0.00 4.09
3705 4521 2.042464 AGATCATTAGGCGGAAGAGCA 58.958 47.619 0.00 0.00 39.27 4.26
3706 4522 2.036992 AGATCATTAGGCGGAAGAGCAG 59.963 50.000 0.00 0.00 39.27 4.24
3707 4523 0.465705 TCATTAGGCGGAAGAGCAGG 59.534 55.000 0.00 0.00 39.27 4.85
3708 4524 0.533755 CATTAGGCGGAAGAGCAGGG 60.534 60.000 0.00 0.00 39.27 4.45
3709 4525 2.330924 ATTAGGCGGAAGAGCAGGGC 62.331 60.000 0.00 0.00 39.27 5.19
3715 4531 2.667418 GAAGAGCAGGGCAGAGCA 59.333 61.111 0.00 0.00 0.00 4.26
3719 4535 4.098722 AGCAGGGCAGAGCAGAGC 62.099 66.667 0.00 0.00 0.00 4.09
3737 4553 2.478894 GAGCGTTTCGAAGGTTCATCAA 59.521 45.455 0.00 0.00 0.00 2.57
3739 4555 3.125316 AGCGTTTCGAAGGTTCATCAATC 59.875 43.478 0.00 0.00 0.00 2.67
3740 4556 3.120338 GCGTTTCGAAGGTTCATCAATCA 60.120 43.478 0.00 0.00 0.00 2.57
3750 4566 8.023128 CGAAGGTTCATCAATCATAAACAAACT 58.977 33.333 0.00 0.00 0.00 2.66
3751 4567 9.132521 GAAGGTTCATCAATCATAAACAAACTG 57.867 33.333 0.00 0.00 0.00 3.16
3766 4584 3.880490 ACAAACTGTGTAATTCTTCGCCA 59.120 39.130 0.00 0.00 39.29 5.69
3803 4625 3.985925 GTCGTGGTTTCTTAATGTCGTCT 59.014 43.478 0.00 0.00 0.00 4.18
3823 4645 1.968017 TCGGTAGCCACTCGTCGTT 60.968 57.895 0.00 0.00 0.00 3.85
3946 4919 6.031751 TGTTTTAAACCACTGTTTCTTGCT 57.968 33.333 5.32 0.00 43.50 3.91
3947 4920 5.866633 TGTTTTAAACCACTGTTTCTTGCTG 59.133 36.000 5.32 0.00 43.50 4.41
3948 4921 5.906113 TTTAAACCACTGTTTCTTGCTGA 57.094 34.783 0.00 0.00 43.50 4.26
3949 4922 3.782889 AAACCACTGTTTCTTGCTGAC 57.217 42.857 0.00 0.00 40.68 3.51
3950 4923 1.299541 ACCACTGTTTCTTGCTGACG 58.700 50.000 0.00 0.00 0.00 4.35
3951 4924 0.588252 CCACTGTTTCTTGCTGACGG 59.412 55.000 0.00 0.00 0.00 4.79
3952 4925 1.299541 CACTGTTTCTTGCTGACGGT 58.700 50.000 0.00 0.00 33.36 4.83
3953 4926 1.003545 CACTGTTTCTTGCTGACGGTG 60.004 52.381 0.00 0.00 42.28 4.94
3954 4927 0.588252 CTGTTTCTTGCTGACGGTGG 59.412 55.000 0.00 0.00 0.00 4.61
3955 4928 0.107410 TGTTTCTTGCTGACGGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
3956 4929 1.139256 TGTTTCTTGCTGACGGTGGTA 59.861 47.619 0.00 0.00 0.00 3.25
3957 4930 1.798813 GTTTCTTGCTGACGGTGGTAG 59.201 52.381 0.00 0.00 0.00 3.18
3958 4931 0.320421 TTCTTGCTGACGGTGGTAGC 60.320 55.000 0.00 0.00 37.93 3.58
3959 4932 1.741770 CTTGCTGACGGTGGTAGCC 60.742 63.158 0.00 0.00 36.64 3.93
3960 4933 2.449031 CTTGCTGACGGTGGTAGCCA 62.449 60.000 0.00 0.00 36.64 4.75
3971 4944 1.604604 TGGTAGCCACTGTTTCTTGC 58.395 50.000 0.00 0.00 0.00 4.01
3972 4945 1.142870 TGGTAGCCACTGTTTCTTGCT 59.857 47.619 0.00 0.00 36.11 3.91
3973 4946 2.370519 TGGTAGCCACTGTTTCTTGCTA 59.629 45.455 0.00 0.00 33.63 3.49
3975 4948 2.938956 AGCCACTGTTTCTTGCTACT 57.061 45.000 0.00 0.00 0.00 2.57
3976 4949 2.498167 AGCCACTGTTTCTTGCTACTG 58.502 47.619 0.00 0.00 0.00 2.74
3977 4950 1.068954 GCCACTGTTTCTTGCTACTGC 60.069 52.381 0.00 0.00 40.20 4.40
3978 4951 2.498167 CCACTGTTTCTTGCTACTGCT 58.502 47.619 0.00 0.00 40.48 4.24
3979 4952 2.225019 CCACTGTTTCTTGCTACTGCTG 59.775 50.000 0.00 0.00 40.48 4.41
3980 4953 1.876156 ACTGTTTCTTGCTACTGCTGC 59.124 47.619 0.00 0.00 40.48 5.25
3981 4954 2.149578 CTGTTTCTTGCTACTGCTGCT 58.850 47.619 0.00 0.00 40.48 4.24
3982 4955 2.551459 CTGTTTCTTGCTACTGCTGCTT 59.449 45.455 0.00 0.00 40.48 3.91
3983 4956 2.549754 TGTTTCTTGCTACTGCTGCTTC 59.450 45.455 0.00 0.00 40.48 3.86
3984 4957 2.810852 GTTTCTTGCTACTGCTGCTTCT 59.189 45.455 0.00 0.00 40.48 2.85
3985 4958 2.847327 TCTTGCTACTGCTGCTTCTT 57.153 45.000 0.00 0.00 40.48 2.52
3986 4959 2.420642 TCTTGCTACTGCTGCTTCTTG 58.579 47.619 0.00 0.00 40.48 3.02
3987 4960 0.877071 TTGCTACTGCTGCTTCTTGC 59.123 50.000 0.00 0.00 40.48 4.01
3988 4961 0.957395 TGCTACTGCTGCTTCTTGCC 60.957 55.000 0.00 0.00 40.48 4.52
3989 4962 1.652167 GCTACTGCTGCTTCTTGCCC 61.652 60.000 0.00 0.00 42.00 5.36
3990 4963 0.035630 CTACTGCTGCTTCTTGCCCT 60.036 55.000 0.00 0.00 42.00 5.19
3991 4964 0.321919 TACTGCTGCTTCTTGCCCTG 60.322 55.000 0.00 0.00 42.00 4.45
3992 4965 1.602888 CTGCTGCTTCTTGCCCTGT 60.603 57.895 0.00 0.00 42.00 4.00
3993 4966 1.863662 CTGCTGCTTCTTGCCCTGTG 61.864 60.000 0.00 0.00 42.00 3.66
3994 4967 1.601759 GCTGCTTCTTGCCCTGTGA 60.602 57.895 0.00 0.00 42.00 3.58
3995 4968 0.964358 GCTGCTTCTTGCCCTGTGAT 60.964 55.000 0.00 0.00 42.00 3.06
3996 4969 1.542492 CTGCTTCTTGCCCTGTGATT 58.458 50.000 0.00 0.00 42.00 2.57
3997 4970 1.471684 CTGCTTCTTGCCCTGTGATTC 59.528 52.381 0.00 0.00 42.00 2.52
3998 4971 1.074405 TGCTTCTTGCCCTGTGATTCT 59.926 47.619 0.00 0.00 42.00 2.40
3999 4972 1.742268 GCTTCTTGCCCTGTGATTCTC 59.258 52.381 0.00 0.00 35.15 2.87
4000 4973 2.617532 GCTTCTTGCCCTGTGATTCTCT 60.618 50.000 0.00 0.00 35.15 3.10
4001 4974 3.683802 CTTCTTGCCCTGTGATTCTCTT 58.316 45.455 0.00 0.00 0.00 2.85
4002 4975 4.836825 CTTCTTGCCCTGTGATTCTCTTA 58.163 43.478 0.00 0.00 0.00 2.10
4003 4976 4.207891 TCTTGCCCTGTGATTCTCTTAC 57.792 45.455 0.00 0.00 0.00 2.34
4004 4977 3.055094 TCTTGCCCTGTGATTCTCTTACC 60.055 47.826 0.00 0.00 0.00 2.85
4005 4978 1.207089 TGCCCTGTGATTCTCTTACCG 59.793 52.381 0.00 0.00 0.00 4.02
4006 4979 1.480954 GCCCTGTGATTCTCTTACCGA 59.519 52.381 0.00 0.00 0.00 4.69
4007 4980 2.093658 GCCCTGTGATTCTCTTACCGAA 60.094 50.000 0.00 0.00 0.00 4.30
4008 4981 3.522553 CCCTGTGATTCTCTTACCGAAC 58.477 50.000 0.00 0.00 0.00 3.95
4009 4982 3.195825 CCCTGTGATTCTCTTACCGAACT 59.804 47.826 0.00 0.00 0.00 3.01
4010 4983 4.177026 CCTGTGATTCTCTTACCGAACTG 58.823 47.826 0.00 0.00 0.00 3.16
4011 4984 4.177026 CTGTGATTCTCTTACCGAACTGG 58.823 47.826 0.00 0.00 46.41 4.00
4012 4985 2.930682 GTGATTCTCTTACCGAACTGGC 59.069 50.000 0.00 0.00 43.94 4.85
4013 4986 2.565391 TGATTCTCTTACCGAACTGGCA 59.435 45.455 0.00 0.00 43.94 4.92
4014 4987 3.197766 TGATTCTCTTACCGAACTGGCAT 59.802 43.478 0.00 0.00 43.94 4.40
4015 4988 3.695830 TTCTCTTACCGAACTGGCATT 57.304 42.857 0.00 0.00 43.94 3.56
4016 4989 2.972625 TCTCTTACCGAACTGGCATTG 58.027 47.619 0.00 0.00 43.94 2.82
4017 4990 2.301870 TCTCTTACCGAACTGGCATTGT 59.698 45.455 0.00 0.00 43.94 2.71
4018 4991 2.673368 CTCTTACCGAACTGGCATTGTC 59.327 50.000 0.00 0.00 43.94 3.18
4019 4992 1.737793 CTTACCGAACTGGCATTGTCC 59.262 52.381 0.00 0.00 43.94 4.02
4020 4993 0.687920 TACCGAACTGGCATTGTCCA 59.312 50.000 0.00 0.88 43.94 4.02
4021 4994 0.038166 ACCGAACTGGCATTGTCCAT 59.962 50.000 0.00 0.00 43.94 3.41
4022 4995 1.280710 ACCGAACTGGCATTGTCCATA 59.719 47.619 0.00 0.00 43.94 2.74
4023 4996 1.942657 CCGAACTGGCATTGTCCATAG 59.057 52.381 0.00 0.00 35.22 2.23
4024 4997 2.419990 CCGAACTGGCATTGTCCATAGA 60.420 50.000 0.00 0.00 35.22 1.98
4025 4998 3.270027 CGAACTGGCATTGTCCATAGAA 58.730 45.455 0.00 0.00 35.22 2.10
4026 4999 3.310774 CGAACTGGCATTGTCCATAGAAG 59.689 47.826 0.00 0.00 35.22 2.85
4027 5000 4.265073 GAACTGGCATTGTCCATAGAAGT 58.735 43.478 0.00 0.00 35.22 3.01
4028 5001 3.614092 ACTGGCATTGTCCATAGAAGTG 58.386 45.455 0.00 0.00 35.22 3.16
4029 5002 2.357009 CTGGCATTGTCCATAGAAGTGC 59.643 50.000 0.00 0.00 35.22 4.40
4030 5003 2.290832 TGGCATTGTCCATAGAAGTGCA 60.291 45.455 0.00 0.00 31.20 4.57
4031 5004 2.357009 GGCATTGTCCATAGAAGTGCAG 59.643 50.000 0.00 0.00 31.20 4.41
4032 5005 2.223433 GCATTGTCCATAGAAGTGCAGC 60.223 50.000 0.00 0.00 0.00 5.25
4033 5006 3.276857 CATTGTCCATAGAAGTGCAGCT 58.723 45.455 0.00 0.00 0.00 4.24
4034 5007 3.423539 TTGTCCATAGAAGTGCAGCTT 57.576 42.857 0.00 0.00 40.76 3.74
4035 5008 3.423539 TGTCCATAGAAGTGCAGCTTT 57.576 42.857 0.00 0.00 37.59 3.51
4036 5009 3.754965 TGTCCATAGAAGTGCAGCTTTT 58.245 40.909 0.00 0.00 37.59 2.27
4037 5010 4.905429 TGTCCATAGAAGTGCAGCTTTTA 58.095 39.130 0.00 0.00 37.59 1.52
4038 5011 4.937620 TGTCCATAGAAGTGCAGCTTTTAG 59.062 41.667 0.00 0.00 37.59 1.85
4039 5012 5.178797 GTCCATAGAAGTGCAGCTTTTAGA 58.821 41.667 0.00 0.00 37.59 2.10
4040 5013 5.643777 GTCCATAGAAGTGCAGCTTTTAGAA 59.356 40.000 0.00 0.00 37.59 2.10
4041 5014 6.149474 GTCCATAGAAGTGCAGCTTTTAGAAA 59.851 38.462 0.00 0.00 37.59 2.52
4042 5015 6.714810 TCCATAGAAGTGCAGCTTTTAGAAAA 59.285 34.615 0.00 0.00 37.59 2.29
4043 5016 7.230510 TCCATAGAAGTGCAGCTTTTAGAAAAA 59.769 33.333 0.00 0.00 37.59 1.94
4044 5017 8.031277 CCATAGAAGTGCAGCTTTTAGAAAAAT 58.969 33.333 0.00 0.00 37.59 1.82
4047 5020 7.087007 AGAAGTGCAGCTTTTAGAAAAATAGC 58.913 34.615 0.00 0.00 37.59 2.97
4048 5021 6.331369 AGTGCAGCTTTTAGAAAAATAGCA 57.669 33.333 0.00 0.00 34.20 3.49
4049 5022 6.152379 AGTGCAGCTTTTAGAAAAATAGCAC 58.848 36.000 19.65 19.65 42.51 4.40
4050 5023 6.015940 AGTGCAGCTTTTAGAAAAATAGCACT 60.016 34.615 21.99 21.99 44.65 4.40
4051 5024 7.174946 AGTGCAGCTTTTAGAAAAATAGCACTA 59.825 33.333 24.13 0.00 45.90 2.74
4052 5025 7.271438 GTGCAGCTTTTAGAAAAATAGCACTAC 59.729 37.037 19.82 6.48 40.97 2.73
4053 5026 7.040755 TGCAGCTTTTAGAAAAATAGCACTACA 60.041 33.333 0.00 0.00 34.20 2.74
4054 5027 7.483059 GCAGCTTTTAGAAAAATAGCACTACAG 59.517 37.037 0.00 0.00 34.20 2.74
4055 5028 8.507249 CAGCTTTTAGAAAAATAGCACTACAGT 58.493 33.333 0.00 0.00 34.20 3.55
4056 5029 9.067986 AGCTTTTAGAAAAATAGCACTACAGTT 57.932 29.630 0.00 0.00 34.20 3.16
4061 5034 9.649167 TTAGAAAAATAGCACTACAGTTAGGTC 57.351 33.333 0.00 0.00 0.00 3.85
4062 5035 7.104290 AGAAAAATAGCACTACAGTTAGGTCC 58.896 38.462 0.00 0.00 0.00 4.46
4063 5036 5.354842 AAATAGCACTACAGTTAGGTCCC 57.645 43.478 0.00 0.00 0.00 4.46
4064 5037 1.569653 AGCACTACAGTTAGGTCCCC 58.430 55.000 0.00 0.00 0.00 4.81
4065 5038 1.078989 AGCACTACAGTTAGGTCCCCT 59.921 52.381 0.00 0.00 37.71 4.79
4066 5039 1.207329 GCACTACAGTTAGGTCCCCTG 59.793 57.143 0.00 0.43 34.61 4.45
4067 5040 2.537143 CACTACAGTTAGGTCCCCTGT 58.463 52.381 10.37 10.37 41.93 4.00
4068 5041 2.233922 CACTACAGTTAGGTCCCCTGTG 59.766 54.545 13.92 8.34 39.63 3.66
4069 5042 1.207329 CTACAGTTAGGTCCCCTGTGC 59.793 57.143 13.92 0.00 39.63 4.57
4070 5043 1.299976 CAGTTAGGTCCCCTGTGCC 59.700 63.158 0.00 0.00 34.61 5.01
4071 5044 2.267961 GTTAGGTCCCCTGTGCCG 59.732 66.667 0.00 0.00 34.61 5.69
4072 5045 3.712907 TTAGGTCCCCTGTGCCGC 61.713 66.667 0.00 0.00 34.61 6.53
4073 5046 4.715130 TAGGTCCCCTGTGCCGCT 62.715 66.667 0.00 0.00 34.61 5.52
4111 5084 2.973420 GAACCCTAGTTCGCCATCG 58.027 57.895 0.00 0.00 42.85 3.84
4112 5085 1.152383 GAACCCTAGTTCGCCATCGC 61.152 60.000 0.00 0.00 42.85 4.58
4113 5086 2.280186 CCCTAGTTCGCCATCGCC 60.280 66.667 0.00 0.00 35.26 5.54
4114 5087 2.658593 CCTAGTTCGCCATCGCCG 60.659 66.667 0.00 0.00 35.26 6.46
4115 5088 3.330853 CTAGTTCGCCATCGCCGC 61.331 66.667 0.00 0.00 35.26 6.53
4116 5089 4.884257 TAGTTCGCCATCGCCGCC 62.884 66.667 0.00 0.00 35.26 6.13
4123 5096 4.569180 CCATCGCCGCCATCCCTT 62.569 66.667 0.00 0.00 0.00 3.95
4124 5097 2.516930 CATCGCCGCCATCCCTTT 60.517 61.111 0.00 0.00 0.00 3.11
4125 5098 2.203209 ATCGCCGCCATCCCTTTC 60.203 61.111 0.00 0.00 0.00 2.62
4126 5099 2.746375 ATCGCCGCCATCCCTTTCT 61.746 57.895 0.00 0.00 0.00 2.52
4127 5100 2.270874 ATCGCCGCCATCCCTTTCTT 62.271 55.000 0.00 0.00 0.00 2.52
4128 5101 2.764314 CGCCGCCATCCCTTTCTTG 61.764 63.158 0.00 0.00 0.00 3.02
4129 5102 3.068729 GCCGCCATCCCTTTCTTGC 62.069 63.158 0.00 0.00 0.00 4.01
4130 5103 2.418083 CCGCCATCCCTTTCTTGCC 61.418 63.158 0.00 0.00 0.00 4.52
4131 5104 1.379044 CGCCATCCCTTTCTTGCCT 60.379 57.895 0.00 0.00 0.00 4.75
4132 5105 0.967380 CGCCATCCCTTTCTTGCCTT 60.967 55.000 0.00 0.00 0.00 4.35
4133 5106 0.820226 GCCATCCCTTTCTTGCCTTC 59.180 55.000 0.00 0.00 0.00 3.46
4134 5107 1.478631 CCATCCCTTTCTTGCCTTCC 58.521 55.000 0.00 0.00 0.00 3.46
4135 5108 1.006400 CCATCCCTTTCTTGCCTTCCT 59.994 52.381 0.00 0.00 0.00 3.36
4136 5109 2.373224 CATCCCTTTCTTGCCTTCCTC 58.627 52.381 0.00 0.00 0.00 3.71
4137 5110 0.698818 TCCCTTTCTTGCCTTCCTCC 59.301 55.000 0.00 0.00 0.00 4.30
4138 5111 0.701147 CCCTTTCTTGCCTTCCTCCT 59.299 55.000 0.00 0.00 0.00 3.69
4139 5112 1.340502 CCCTTTCTTGCCTTCCTCCTC 60.341 57.143 0.00 0.00 0.00 3.71
4140 5113 1.340502 CCTTTCTTGCCTTCCTCCTCC 60.341 57.143 0.00 0.00 0.00 4.30
4141 5114 0.698818 TTTCTTGCCTTCCTCCTCCC 59.301 55.000 0.00 0.00 0.00 4.30
4142 5115 0.178861 TTCTTGCCTTCCTCCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
4143 5116 0.178861 TCTTGCCTTCCTCCTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
4144 5117 0.034670 CTTGCCTTCCTCCTCCCTTG 60.035 60.000 0.00 0.00 0.00 3.61
4145 5118 2.142292 TTGCCTTCCTCCTCCCTTGC 62.142 60.000 0.00 0.00 0.00 4.01
4146 5119 3.002371 CCTTCCTCCTCCCTTGCC 58.998 66.667 0.00 0.00 0.00 4.52
4147 5120 2.586792 CTTCCTCCTCCCTTGCCG 59.413 66.667 0.00 0.00 0.00 5.69
4148 5121 3.689002 CTTCCTCCTCCCTTGCCGC 62.689 68.421 0.00 0.00 0.00 6.53
4151 5124 4.168291 CTCCTCCCTTGCCGCCTC 62.168 72.222 0.00 0.00 0.00 4.70
4154 5127 4.479993 CTCCCTTGCCGCCTCCAG 62.480 72.222 0.00 0.00 0.00 3.86
4158 5131 4.785453 CTTGCCGCCTCCAGGGAC 62.785 72.222 0.00 0.00 37.23 4.46
4164 5137 4.083862 GCCTCCAGGGACACCGTC 62.084 72.222 0.00 0.00 43.47 4.79
4165 5138 3.760035 CCTCCAGGGACACCGTCG 61.760 72.222 0.00 0.00 43.47 5.12
4166 5139 2.989824 CTCCAGGGACACCGTCGT 60.990 66.667 0.00 0.00 43.47 4.34
4167 5140 3.282745 CTCCAGGGACACCGTCGTG 62.283 68.421 0.00 0.00 46.11 4.35
4169 5142 4.293648 CAGGGACACCGTCGTGCA 62.294 66.667 0.00 0.00 44.40 4.57
4170 5143 3.542676 AGGGACACCGTCGTGCAA 61.543 61.111 0.00 0.00 44.40 4.08
4171 5144 2.589442 GGGACACCGTCGTGCAAA 60.589 61.111 0.00 0.00 44.40 3.68
4172 5145 2.604174 GGGACACCGTCGTGCAAAG 61.604 63.158 0.00 0.00 44.40 2.77
4173 5146 2.248431 GACACCGTCGTGCAAAGC 59.752 61.111 0.00 0.00 44.40 3.51
4174 5147 3.236618 GACACCGTCGTGCAAAGCC 62.237 63.158 0.00 0.00 44.40 4.35
4175 5148 4.025401 CACCGTCGTGCAAAGCCC 62.025 66.667 0.00 0.00 32.04 5.19
4176 5149 4.555709 ACCGTCGTGCAAAGCCCA 62.556 61.111 0.00 0.00 0.00 5.36
4177 5150 4.025401 CCGTCGTGCAAAGCCCAC 62.025 66.667 0.00 0.00 0.00 4.61
4182 5155 4.980903 GTGCAAAGCCCACGCGTG 62.981 66.667 31.77 31.77 41.18 5.34
4217 5190 2.904866 CTCCTCCCCTCTCGCGAG 60.905 72.222 30.03 30.03 37.01 5.03
4225 5198 3.898509 CTCTCGCGAGGCTCCTGG 61.899 72.222 33.98 8.90 33.51 4.45
4244 5217 4.944372 CGGCGCGGGATGGACTAC 62.944 72.222 8.83 0.00 0.00 2.73
4245 5218 3.845259 GGCGCGGGATGGACTACA 61.845 66.667 8.83 0.00 0.00 2.74
4246 5219 2.185867 GCGCGGGATGGACTACAA 59.814 61.111 8.83 0.00 0.00 2.41
4247 5220 2.171725 GCGCGGGATGGACTACAAC 61.172 63.158 8.83 0.00 0.00 3.32
4248 5221 1.216977 CGCGGGATGGACTACAACA 59.783 57.895 0.00 0.00 0.00 3.33
4249 5222 0.390603 CGCGGGATGGACTACAACAA 60.391 55.000 0.00 0.00 0.00 2.83
4250 5223 1.816074 GCGGGATGGACTACAACAAA 58.184 50.000 0.00 0.00 0.00 2.83
4251 5224 1.467342 GCGGGATGGACTACAACAAAC 59.533 52.381 0.00 0.00 0.00 2.93
4252 5225 2.773487 CGGGATGGACTACAACAAACA 58.227 47.619 0.00 0.00 0.00 2.83
4253 5226 2.482721 CGGGATGGACTACAACAAACAC 59.517 50.000 0.00 0.00 0.00 3.32
4254 5227 2.817844 GGGATGGACTACAACAAACACC 59.182 50.000 0.00 0.00 0.00 4.16
4255 5228 2.817844 GGATGGACTACAACAAACACCC 59.182 50.000 0.00 0.00 0.00 4.61
4256 5229 2.351706 TGGACTACAACAAACACCCC 57.648 50.000 0.00 0.00 0.00 4.95
4257 5230 1.564818 TGGACTACAACAAACACCCCA 59.435 47.619 0.00 0.00 0.00 4.96
4258 5231 1.951602 GGACTACAACAAACACCCCAC 59.048 52.381 0.00 0.00 0.00 4.61
4259 5232 2.422377 GGACTACAACAAACACCCCACT 60.422 50.000 0.00 0.00 0.00 4.00
4260 5233 3.181452 GGACTACAACAAACACCCCACTA 60.181 47.826 0.00 0.00 0.00 2.74
4261 5234 4.506095 GGACTACAACAAACACCCCACTAT 60.506 45.833 0.00 0.00 0.00 2.12
4262 5235 5.280113 GGACTACAACAAACACCCCACTATA 60.280 44.000 0.00 0.00 0.00 1.31
4263 5236 5.554070 ACTACAACAAACACCCCACTATAC 58.446 41.667 0.00 0.00 0.00 1.47
4264 5237 3.758425 ACAACAAACACCCCACTATACC 58.242 45.455 0.00 0.00 0.00 2.73
4265 5238 3.138653 ACAACAAACACCCCACTATACCA 59.861 43.478 0.00 0.00 0.00 3.25
4266 5239 4.145807 CAACAAACACCCCACTATACCAA 58.854 43.478 0.00 0.00 0.00 3.67
4267 5240 3.758425 ACAAACACCCCACTATACCAAC 58.242 45.455 0.00 0.00 0.00 3.77
4268 5241 3.138653 ACAAACACCCCACTATACCAACA 59.861 43.478 0.00 0.00 0.00 3.33
4269 5242 3.428413 AACACCCCACTATACCAACAC 57.572 47.619 0.00 0.00 0.00 3.32
4270 5243 2.340731 ACACCCCACTATACCAACACA 58.659 47.619 0.00 0.00 0.00 3.72
4271 5244 2.712087 ACACCCCACTATACCAACACAA 59.288 45.455 0.00 0.00 0.00 3.33
4272 5245 3.244770 ACACCCCACTATACCAACACAAG 60.245 47.826 0.00 0.00 0.00 3.16
4273 5246 2.983898 ACCCCACTATACCAACACAAGT 59.016 45.455 0.00 0.00 0.00 3.16
4274 5247 3.008704 ACCCCACTATACCAACACAAGTC 59.991 47.826 0.00 0.00 0.00 3.01
4275 5248 3.263425 CCCCACTATACCAACACAAGTCT 59.737 47.826 0.00 0.00 0.00 3.24
4276 5249 4.468510 CCCCACTATACCAACACAAGTCTA 59.531 45.833 0.00 0.00 0.00 2.59
4277 5250 5.395324 CCCCACTATACCAACACAAGTCTAG 60.395 48.000 0.00 0.00 0.00 2.43
4278 5251 5.109903 CCACTATACCAACACAAGTCTAGC 58.890 45.833 0.00 0.00 0.00 3.42
4279 5252 5.337250 CCACTATACCAACACAAGTCTAGCA 60.337 44.000 0.00 0.00 0.00 3.49
4280 5253 6.163476 CACTATACCAACACAAGTCTAGCAA 58.837 40.000 0.00 0.00 0.00 3.91
4281 5254 6.090898 CACTATACCAACACAAGTCTAGCAAC 59.909 42.308 0.00 0.00 0.00 4.17
4282 5255 2.210116 ACCAACACAAGTCTAGCAACG 58.790 47.619 0.00 0.00 0.00 4.10
4283 5256 2.159014 ACCAACACAAGTCTAGCAACGA 60.159 45.455 0.00 0.00 0.00 3.85
4284 5257 3.067106 CCAACACAAGTCTAGCAACGAT 58.933 45.455 0.00 0.00 0.00 3.73
4285 5258 3.120546 CCAACACAAGTCTAGCAACGATG 60.121 47.826 0.00 0.00 0.00 3.84
4286 5259 3.660501 ACACAAGTCTAGCAACGATGA 57.339 42.857 0.00 0.00 0.00 2.92
4287 5260 4.193826 ACACAAGTCTAGCAACGATGAT 57.806 40.909 0.00 0.00 0.00 2.45
4288 5261 3.928992 ACACAAGTCTAGCAACGATGATG 59.071 43.478 0.00 0.00 0.00 3.07
4289 5262 4.176271 CACAAGTCTAGCAACGATGATGA 58.824 43.478 0.00 0.00 0.00 2.92
4290 5263 4.807834 CACAAGTCTAGCAACGATGATGAT 59.192 41.667 0.00 0.00 0.00 2.45
4291 5264 5.979517 CACAAGTCTAGCAACGATGATGATA 59.020 40.000 0.00 0.00 0.00 2.15
4292 5265 6.476706 CACAAGTCTAGCAACGATGATGATAA 59.523 38.462 0.00 0.00 0.00 1.75
4293 5266 6.477033 ACAAGTCTAGCAACGATGATGATAAC 59.523 38.462 0.00 0.00 0.00 1.89
4294 5267 6.149129 AGTCTAGCAACGATGATGATAACA 57.851 37.500 0.00 0.00 0.00 2.41
4295 5268 6.753180 AGTCTAGCAACGATGATGATAACAT 58.247 36.000 0.00 0.00 39.67 2.71
4296 5269 6.644181 AGTCTAGCAACGATGATGATAACATG 59.356 38.462 0.00 0.00 36.82 3.21
4297 5270 6.422100 GTCTAGCAACGATGATGATAACATGT 59.578 38.462 0.00 0.00 36.82 3.21
4298 5271 5.413969 AGCAACGATGATGATAACATGTG 57.586 39.130 0.00 0.00 36.82 3.21
4299 5272 4.877823 AGCAACGATGATGATAACATGTGT 59.122 37.500 0.00 0.00 36.82 3.72
4300 5273 5.355071 AGCAACGATGATGATAACATGTGTT 59.645 36.000 0.00 3.64 41.73 3.32
4301 5274 5.453266 GCAACGATGATGATAACATGTGTTG 59.547 40.000 0.00 6.56 40.11 3.33
4302 5275 6.545508 CAACGATGATGATAACATGTGTTGT 58.454 36.000 0.00 1.69 41.53 3.32
4304 5277 7.144722 ACGATGATGATAACATGTGTTGTTT 57.855 32.000 0.00 0.00 46.51 2.83
4305 5278 7.022979 ACGATGATGATAACATGTGTTGTTTG 58.977 34.615 0.00 0.00 46.51 2.93
4306 5279 6.469915 CGATGATGATAACATGTGTTGTTTGG 59.530 38.462 0.00 0.00 46.51 3.28
4307 5280 6.023357 TGATGATAACATGTGTTGTTTGGG 57.977 37.500 0.00 0.00 46.51 4.12
4308 5281 5.538053 TGATGATAACATGTGTTGTTTGGGT 59.462 36.000 0.00 0.00 46.51 4.51
4309 5282 5.860941 TGATAACATGTGTTGTTTGGGTT 57.139 34.783 0.00 0.00 46.51 4.11
4310 5283 6.961360 TGATAACATGTGTTGTTTGGGTTA 57.039 33.333 0.00 0.00 46.51 2.85
4311 5284 7.531857 TGATAACATGTGTTGTTTGGGTTAT 57.468 32.000 0.00 0.00 46.51 1.89
4312 5285 7.598278 TGATAACATGTGTTGTTTGGGTTATC 58.402 34.615 0.00 12.32 46.51 1.75
4313 5286 4.864704 ACATGTGTTGTTTGGGTTATCC 57.135 40.909 0.00 0.00 33.74 2.59
4314 5287 4.479158 ACATGTGTTGTTTGGGTTATCCT 58.521 39.130 0.00 0.00 33.74 3.24
4315 5288 4.522789 ACATGTGTTGTTTGGGTTATCCTC 59.477 41.667 0.00 0.00 33.74 3.71
4316 5289 3.492337 TGTGTTGTTTGGGTTATCCTCC 58.508 45.455 0.00 0.00 36.20 4.30
4317 5290 2.823747 GTGTTGTTTGGGTTATCCTCCC 59.176 50.000 0.00 0.00 44.81 4.30
4323 5296 2.541177 GGGTTATCCTCCCACCTCC 58.459 63.158 0.00 0.00 44.05 4.30
4324 5297 1.060743 GGGTTATCCTCCCACCTCCC 61.061 65.000 0.00 0.00 44.05 4.30
4325 5298 1.060743 GGTTATCCTCCCACCTCCCC 61.061 65.000 0.00 0.00 0.00 4.81
4326 5299 1.060743 GTTATCCTCCCACCTCCCCC 61.061 65.000 0.00 0.00 0.00 5.40
4327 5300 1.542093 TTATCCTCCCACCTCCCCCA 61.542 60.000 0.00 0.00 0.00 4.96
4328 5301 2.265890 TATCCTCCCACCTCCCCCAC 62.266 65.000 0.00 0.00 0.00 4.61
4329 5302 4.354943 CCTCCCACCTCCCCCACT 62.355 72.222 0.00 0.00 0.00 4.00
4330 5303 2.204151 CTCCCACCTCCCCCACTT 60.204 66.667 0.00 0.00 0.00 3.16
4331 5304 1.082206 CTCCCACCTCCCCCACTTA 59.918 63.158 0.00 0.00 0.00 2.24
4332 5305 0.327576 CTCCCACCTCCCCCACTTAT 60.328 60.000 0.00 0.00 0.00 1.73
4333 5306 1.028638 TCCCACCTCCCCCACTTATA 58.971 55.000 0.00 0.00 0.00 0.98
4334 5307 1.588583 TCCCACCTCCCCCACTTATAT 59.411 52.381 0.00 0.00 0.00 0.86
4335 5308 1.985895 CCCACCTCCCCCACTTATATC 59.014 57.143 0.00 0.00 0.00 1.63
4645 5618 4.413800 GCGCACCGGCCGAAAATT 62.414 61.111 30.73 1.41 36.38 1.82
4646 5619 2.257067 CGCACCGGCCGAAAATTT 59.743 55.556 30.73 0.00 36.38 1.82
4647 5620 1.799916 CGCACCGGCCGAAAATTTC 60.800 57.895 30.73 7.07 36.38 2.17
4657 5630 3.694889 GAAAATTTCGGCCGGTCTG 57.305 52.632 27.83 0.78 0.00 3.51
4658 5631 0.879090 GAAAATTTCGGCCGGTCTGT 59.121 50.000 27.83 6.58 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.182627 AGAATTCAGAAATCATGCACCACTA 58.817 36.000 8.44 0.00 0.00 2.74
65 66 5.014858 AGAATTCAGAAATCATGCACCACT 58.985 37.500 8.44 0.00 0.00 4.00
121 122 3.065648 TCCACAGTTGAACGTTTTAAGGC 59.934 43.478 0.46 0.00 0.00 4.35
335 342 1.287442 TGGCCTGCCAGGAAATCAATA 59.713 47.619 16.85 0.00 41.89 1.90
553 578 7.727578 TCACCCAGTAACAGAAGATATAACA 57.272 36.000 0.00 0.00 0.00 2.41
554 579 8.421784 TCATCACCCAGTAACAGAAGATATAAC 58.578 37.037 0.00 0.00 0.00 1.89
555 580 8.421784 GTCATCACCCAGTAACAGAAGATATAA 58.578 37.037 0.00 0.00 0.00 0.98
609 638 3.882888 CTGGTCTTCAGTAGTTTGGCAAA 59.117 43.478 8.93 8.93 38.64 3.68
613 642 3.070018 CTGCTGGTCTTCAGTAGTTTGG 58.930 50.000 3.51 0.00 46.68 3.28
645 676 5.413213 CCCCATACAAAACAGACGTTATCAA 59.587 40.000 0.00 0.00 33.99 2.57
658 1259 6.042552 TGCTCATTTTCTTTCCCCATACAAAA 59.957 34.615 0.00 0.00 0.00 2.44
667 1268 5.184671 ACAGATTCTGCTCATTTTCTTTCCC 59.815 40.000 13.64 0.00 34.37 3.97
675 1276 3.755378 GTGACCACAGATTCTGCTCATTT 59.245 43.478 13.64 0.00 34.37 2.32
719 1324 5.154222 GCTCTTACAAAGGGAATGTTTTCG 58.846 41.667 0.00 0.00 32.28 3.46
839 1444 2.129555 TTGCCAAGGGAGGAGCTGTC 62.130 60.000 0.00 0.00 0.00 3.51
867 1472 1.493871 CTCCCAAGGATCATTCCAGCT 59.506 52.381 0.00 0.00 45.30 4.24
871 1476 3.320256 GCAATTCTCCCAAGGATCATTCC 59.680 47.826 0.00 0.00 42.96 3.01
878 1483 1.283029 CTCCTGCAATTCTCCCAAGGA 59.717 52.381 0.00 0.00 0.00 3.36
914 1526 2.644676 GCTTTGGTCCTCCCTAATGTC 58.355 52.381 0.00 0.00 0.00 3.06
915 1527 1.065418 CGCTTTGGTCCTCCCTAATGT 60.065 52.381 0.00 0.00 0.00 2.71
916 1528 1.209504 TCGCTTTGGTCCTCCCTAATG 59.790 52.381 0.00 0.00 0.00 1.90
917 1529 1.486726 CTCGCTTTGGTCCTCCCTAAT 59.513 52.381 0.00 0.00 0.00 1.73
934 1546 1.064314 TCCTTTCTCCTCCCTCTCTCG 60.064 57.143 0.00 0.00 0.00 4.04
941 1553 0.618968 TCAGCCTCCTTTCTCCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
942 1554 1.416030 GATCAGCCTCCTTTCTCCTCC 59.584 57.143 0.00 0.00 0.00 4.30
946 1558 2.483538 GCTCAGATCAGCCTCCTTTCTC 60.484 54.545 0.00 0.00 32.76 2.87
955 1567 1.524165 CAGCCAGCTCAGATCAGCC 60.524 63.158 1.57 0.00 40.65 4.85
1464 2086 4.021925 GAGGTGACCTTGCCGCCT 62.022 66.667 5.21 0.00 46.32 5.52
1529 2151 4.552365 CGCCGCCCTGGATCATGT 62.552 66.667 0.00 0.00 42.00 3.21
1689 2332 9.125026 AGAAACAAGACTTACATGATGAAGTTT 57.875 29.630 0.00 0.00 36.04 2.66
1716 2365 0.526524 ATGAACTAGCGAGCGAGCAC 60.527 55.000 9.01 1.16 40.15 4.40
1729 2378 0.324614 TGTCCGTCCATGCATGAACT 59.675 50.000 28.31 0.00 0.00 3.01
1748 2401 4.613925 ACCATGATCGATCAAGCTACAT 57.386 40.909 30.41 10.76 40.69 2.29
1749 2402 4.406648 AACCATGATCGATCAAGCTACA 57.593 40.909 30.41 7.68 40.69 2.74
1750 2403 4.383052 CGTAACCATGATCGATCAAGCTAC 59.617 45.833 30.41 24.70 40.69 3.58
1751 2404 4.037565 ACGTAACCATGATCGATCAAGCTA 59.962 41.667 30.41 17.42 40.69 3.32
1752 2405 3.181475 ACGTAACCATGATCGATCAAGCT 60.181 43.478 30.41 18.35 40.69 3.74
1952 2671 1.067364 TCGAAGCTGTTGTGGTCGTAA 59.933 47.619 2.02 0.00 0.00 3.18
2076 2798 2.391821 CGATCGTGCGTGTTGCTC 59.608 61.111 7.03 0.00 46.63 4.26
2078 2800 4.794241 GGCGATCGTGCGTGTTGC 62.794 66.667 17.81 0.00 46.70 4.17
2079 2801 2.739704 ATGGCGATCGTGCGTGTTG 61.740 57.895 17.81 0.00 35.06 3.33
2080 2802 2.434185 ATGGCGATCGTGCGTGTT 60.434 55.556 17.81 0.00 35.06 3.32
2081 2803 3.188100 CATGGCGATCGTGCGTGT 61.188 61.111 17.81 0.00 35.06 4.49
2082 2804 4.580044 GCATGGCGATCGTGCGTG 62.580 66.667 17.81 11.54 46.81 5.34
2086 2808 2.051614 GCATGCATGGCGATCGTG 60.052 61.111 27.34 8.44 35.53 4.35
2109 2831 3.128589 GCAACCGAGAAAGATTAATGGCA 59.871 43.478 0.00 0.00 0.00 4.92
2110 2832 3.128589 TGCAACCGAGAAAGATTAATGGC 59.871 43.478 0.00 0.00 0.00 4.40
2111 2833 4.963276 TGCAACCGAGAAAGATTAATGG 57.037 40.909 0.00 0.00 0.00 3.16
2112 2834 7.253422 AGATTTGCAACCGAGAAAGATTAATG 58.747 34.615 0.00 0.00 0.00 1.90
2125 2847 2.350899 TGCATTGAGATTTGCAACCG 57.649 45.000 0.00 0.00 45.30 4.44
2157 2883 1.043116 CGCCTCCATGTCCTCCTACA 61.043 60.000 0.00 0.00 0.00 2.74
2647 3433 1.002868 CACCTCCTGCTGGAACTGG 60.003 63.158 13.89 13.43 42.66 4.00
3370 4168 3.299977 CCCATGCCGCCCATCATG 61.300 66.667 0.00 0.00 39.67 3.07
3449 4247 1.448540 GTGACTGCGACATGGAGGG 60.449 63.158 0.00 0.00 41.01 4.30
3470 4268 4.943142 TTCGTGTTGGTTTTCTTACGTT 57.057 36.364 0.00 0.00 33.68 3.99
3491 4298 3.497103 TGAGAAATGGCGGATGATCAT 57.503 42.857 8.25 8.25 0.00 2.45
3492 4299 3.405831 GATGAGAAATGGCGGATGATCA 58.594 45.455 0.00 0.00 0.00 2.92
3501 4308 3.010200 ACAAGGAGGATGAGAAATGGC 57.990 47.619 0.00 0.00 0.00 4.40
3527 4334 0.435008 GTCAGTGTGCATCGTCGTTC 59.565 55.000 0.00 0.00 0.00 3.95
3528 4335 0.249280 TGTCAGTGTGCATCGTCGTT 60.249 50.000 0.00 0.00 0.00 3.85
3529 4336 0.939577 GTGTCAGTGTGCATCGTCGT 60.940 55.000 0.00 0.00 0.00 4.34
3530 4337 1.775344 GTGTCAGTGTGCATCGTCG 59.225 57.895 0.00 0.00 0.00 5.12
3531 4338 1.617755 CCGTGTCAGTGTGCATCGTC 61.618 60.000 0.00 0.00 0.00 4.20
3537 4344 1.463444 GATTTACCCGTGTCAGTGTGC 59.537 52.381 0.00 0.00 0.00 4.57
3561 4368 1.153309 TCATCTGGTCCTGCATGCG 60.153 57.895 14.09 7.87 0.00 4.73
3572 4387 0.936764 CGAACGGATCGCTCATCTGG 60.937 60.000 0.00 0.00 45.89 3.86
3573 4388 2.499981 CGAACGGATCGCTCATCTG 58.500 57.895 0.00 0.82 45.89 2.90
3675 4491 4.272018 CCGCCTAATGATCTGAGAACTTTG 59.728 45.833 0.00 0.00 0.00 2.77
3676 4492 4.162320 TCCGCCTAATGATCTGAGAACTTT 59.838 41.667 0.00 0.00 0.00 2.66
3697 4513 2.124778 GCTCTGCCCTGCTCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
3698 4514 1.449956 CTGCTCTGCCCTGCTCTTC 60.450 63.158 0.00 0.00 0.00 2.87
3700 4516 2.284478 TCTGCTCTGCCCTGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
3701 4517 2.187424 CTCTGCTCTGCCCTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
3702 4518 4.098722 GCTCTGCTCTGCCCTGCT 62.099 66.667 0.00 0.00 0.00 4.24
3704 4520 3.602513 AACGCTCTGCTCTGCCCTG 62.603 63.158 0.00 0.00 0.00 4.45
3705 4521 2.794820 GAAACGCTCTGCTCTGCCCT 62.795 60.000 0.00 0.00 0.00 5.19
3706 4522 2.359230 AAACGCTCTGCTCTGCCC 60.359 61.111 0.00 0.00 0.00 5.36
3707 4523 2.734673 CGAAACGCTCTGCTCTGCC 61.735 63.158 0.00 0.00 0.00 4.85
3708 4524 1.284982 TTCGAAACGCTCTGCTCTGC 61.285 55.000 0.00 0.00 0.00 4.26
3709 4525 0.712775 CTTCGAAACGCTCTGCTCTG 59.287 55.000 0.00 0.00 0.00 3.35
3715 4531 2.288825 TGATGAACCTTCGAAACGCTCT 60.289 45.455 0.00 0.00 0.00 4.09
3719 4535 4.661993 TGATTGATGAACCTTCGAAACG 57.338 40.909 0.00 0.00 0.00 3.60
3737 4553 9.825972 CGAAGAATTACACAGTTTGTTTATGAT 57.174 29.630 0.00 0.00 39.91 2.45
3739 4555 7.060633 GGCGAAGAATTACACAGTTTGTTTATG 59.939 37.037 0.00 0.00 39.91 1.90
3740 4556 7.081976 GGCGAAGAATTACACAGTTTGTTTAT 58.918 34.615 0.00 0.00 39.91 1.40
3750 4566 3.259876 AGGTACTGGCGAAGAATTACACA 59.740 43.478 0.00 0.00 37.18 3.72
3751 4567 3.858247 AGGTACTGGCGAAGAATTACAC 58.142 45.455 0.00 0.00 37.18 2.90
3766 4584 4.347607 ACCACGACCAAGTATTAGGTACT 58.652 43.478 0.00 0.00 45.56 2.73
3803 4625 2.683859 CGACGAGTGGCTACCGACA 61.684 63.158 15.69 0.00 0.00 4.35
3823 4645 1.503294 TTACAACAACGAGCGCATGA 58.497 45.000 11.47 0.00 0.00 3.07
3870 4843 4.909305 CGTTTTACACACGATTGCTTTCAT 59.091 37.500 0.00 0.00 40.20 2.57
3898 4871 5.998981 AGAGCTGGATCAAGAAATCATCATC 59.001 40.000 0.00 0.00 0.00 2.92
3899 4872 5.942961 AGAGCTGGATCAAGAAATCATCAT 58.057 37.500 0.00 0.00 0.00 2.45
3900 4873 5.369409 AGAGCTGGATCAAGAAATCATCA 57.631 39.130 0.00 0.00 0.00 3.07
3952 4925 1.142870 AGCAAGAAACAGTGGCTACCA 59.857 47.619 0.00 0.00 32.09 3.25
3953 4926 1.897560 AGCAAGAAACAGTGGCTACC 58.102 50.000 0.00 0.00 32.09 3.18
3955 4928 3.664107 CAGTAGCAAGAAACAGTGGCTA 58.336 45.455 0.00 0.00 36.10 3.93
3956 4929 2.498167 CAGTAGCAAGAAACAGTGGCT 58.502 47.619 0.00 0.00 38.55 4.75
3957 4930 1.068954 GCAGTAGCAAGAAACAGTGGC 60.069 52.381 0.00 0.00 41.58 5.01
3958 4931 2.225019 CAGCAGTAGCAAGAAACAGTGG 59.775 50.000 0.00 0.00 45.49 4.00
3959 4932 2.350197 GCAGCAGTAGCAAGAAACAGTG 60.350 50.000 0.00 0.00 45.49 3.66
3960 4933 1.876156 GCAGCAGTAGCAAGAAACAGT 59.124 47.619 0.00 0.00 45.49 3.55
3961 4934 2.149578 AGCAGCAGTAGCAAGAAACAG 58.850 47.619 0.00 0.00 45.49 3.16
3962 4935 2.260844 AGCAGCAGTAGCAAGAAACA 57.739 45.000 0.00 0.00 45.49 2.83
3963 4936 2.810852 AGAAGCAGCAGTAGCAAGAAAC 59.189 45.455 0.00 0.00 45.49 2.78
3964 4937 3.131709 AGAAGCAGCAGTAGCAAGAAA 57.868 42.857 0.00 0.00 45.49 2.52
3965 4938 2.810274 CAAGAAGCAGCAGTAGCAAGAA 59.190 45.455 0.00 0.00 45.49 2.52
3966 4939 2.420642 CAAGAAGCAGCAGTAGCAAGA 58.579 47.619 0.00 0.00 45.49 3.02
3967 4940 1.135746 GCAAGAAGCAGCAGTAGCAAG 60.136 52.381 0.00 0.00 45.49 4.01
3968 4941 0.877071 GCAAGAAGCAGCAGTAGCAA 59.123 50.000 0.00 0.00 45.49 3.91
3969 4942 2.548178 GCAAGAAGCAGCAGTAGCA 58.452 52.632 0.00 0.00 45.49 3.49
3977 4950 4.727556 GAGAATCACAGGGCAAGAAGCAG 61.728 52.174 0.00 0.00 39.55 4.24
3978 4951 2.877300 GAGAATCACAGGGCAAGAAGCA 60.877 50.000 0.00 0.00 39.55 3.91
3979 4952 1.742268 GAGAATCACAGGGCAAGAAGC 59.258 52.381 0.00 0.00 37.58 3.86
3980 4953 3.347077 AGAGAATCACAGGGCAAGAAG 57.653 47.619 0.00 0.00 37.82 2.85
3981 4954 3.795688 AAGAGAATCACAGGGCAAGAA 57.204 42.857 0.00 0.00 37.82 2.52
3982 4955 3.055094 GGTAAGAGAATCACAGGGCAAGA 60.055 47.826 0.00 0.00 37.82 3.02
3983 4956 3.274288 GGTAAGAGAATCACAGGGCAAG 58.726 50.000 0.00 0.00 37.82 4.01
3984 4957 2.354704 CGGTAAGAGAATCACAGGGCAA 60.355 50.000 0.00 0.00 37.82 4.52
3985 4958 1.207089 CGGTAAGAGAATCACAGGGCA 59.793 52.381 0.00 0.00 37.82 5.36
3986 4959 1.480954 TCGGTAAGAGAATCACAGGGC 59.519 52.381 0.00 0.00 37.82 5.19
3987 4960 3.195825 AGTTCGGTAAGAGAATCACAGGG 59.804 47.826 0.00 0.00 37.82 4.45
3988 4961 4.177026 CAGTTCGGTAAGAGAATCACAGG 58.823 47.826 0.00 0.00 37.82 4.00
3989 4962 4.177026 CCAGTTCGGTAAGAGAATCACAG 58.823 47.826 0.00 0.00 37.82 3.66
3990 4963 3.616560 GCCAGTTCGGTAAGAGAATCACA 60.617 47.826 0.00 0.00 35.07 3.58
3991 4964 2.930682 GCCAGTTCGGTAAGAGAATCAC 59.069 50.000 0.00 0.00 35.07 3.06
3992 4965 2.565391 TGCCAGTTCGGTAAGAGAATCA 59.435 45.455 0.00 0.00 35.07 2.57
3993 4966 3.247006 TGCCAGTTCGGTAAGAGAATC 57.753 47.619 0.00 0.00 36.97 2.52
3994 4967 3.914426 ATGCCAGTTCGGTAAGAGAAT 57.086 42.857 0.00 0.00 36.97 2.40
3995 4968 3.244422 ACAATGCCAGTTCGGTAAGAGAA 60.244 43.478 0.00 0.00 36.97 2.87
3996 4969 2.301870 ACAATGCCAGTTCGGTAAGAGA 59.698 45.455 0.00 0.00 36.97 3.10
3997 4970 2.673368 GACAATGCCAGTTCGGTAAGAG 59.327 50.000 0.00 0.00 36.97 2.85
3998 4971 2.614481 GGACAATGCCAGTTCGGTAAGA 60.614 50.000 0.00 0.00 36.97 2.10
3999 4972 1.737793 GGACAATGCCAGTTCGGTAAG 59.262 52.381 0.00 0.00 36.97 2.34
4000 4973 1.072489 TGGACAATGCCAGTTCGGTAA 59.928 47.619 0.00 0.00 36.97 2.85
4001 4974 0.687920 TGGACAATGCCAGTTCGGTA 59.312 50.000 0.00 0.00 36.97 4.02
4002 4975 0.038166 ATGGACAATGCCAGTTCGGT 59.962 50.000 3.15 0.00 42.15 4.69
4003 4976 1.942657 CTATGGACAATGCCAGTTCGG 59.057 52.381 3.15 0.00 42.15 4.30
4004 4977 2.905075 TCTATGGACAATGCCAGTTCG 58.095 47.619 3.15 0.00 42.15 3.95
4005 4978 4.095483 CACTTCTATGGACAATGCCAGTTC 59.905 45.833 3.15 0.00 42.15 3.01
4006 4979 4.012374 CACTTCTATGGACAATGCCAGTT 58.988 43.478 3.15 0.00 42.15 3.16
4007 4980 3.614092 CACTTCTATGGACAATGCCAGT 58.386 45.455 3.15 0.00 42.15 4.00
4008 4981 2.357009 GCACTTCTATGGACAATGCCAG 59.643 50.000 3.15 0.00 42.15 4.85
4009 4982 2.290832 TGCACTTCTATGGACAATGCCA 60.291 45.455 6.09 0.00 43.23 4.92
4010 4983 2.357009 CTGCACTTCTATGGACAATGCC 59.643 50.000 6.09 0.00 0.00 4.40
4011 4984 2.223433 GCTGCACTTCTATGGACAATGC 60.223 50.000 0.00 2.45 0.00 3.56
4012 4985 3.276857 AGCTGCACTTCTATGGACAATG 58.723 45.455 1.02 0.00 0.00 2.82
4013 4986 3.641434 AGCTGCACTTCTATGGACAAT 57.359 42.857 1.02 0.00 0.00 2.71
4014 4987 3.423539 AAGCTGCACTTCTATGGACAA 57.576 42.857 1.02 0.00 30.77 3.18
4015 4988 3.423539 AAAGCTGCACTTCTATGGACA 57.576 42.857 1.02 0.00 37.75 4.02
4016 4989 5.178797 TCTAAAAGCTGCACTTCTATGGAC 58.821 41.667 1.02 0.00 37.75 4.02
4017 4990 5.420725 TCTAAAAGCTGCACTTCTATGGA 57.579 39.130 1.02 0.00 37.75 3.41
4018 4991 6.500684 TTTCTAAAAGCTGCACTTCTATGG 57.499 37.500 1.02 0.00 37.75 2.74
4019 4992 8.976986 ATTTTTCTAAAAGCTGCACTTCTATG 57.023 30.769 1.02 0.00 37.75 2.23
4021 4994 8.237267 GCTATTTTTCTAAAAGCTGCACTTCTA 58.763 33.333 1.02 0.00 37.75 2.10
4022 4995 7.087007 GCTATTTTTCTAAAAGCTGCACTTCT 58.913 34.615 1.02 0.00 37.75 2.85
4023 4996 6.863126 TGCTATTTTTCTAAAAGCTGCACTTC 59.137 34.615 1.02 0.00 37.75 3.01
4024 4997 6.642540 GTGCTATTTTTCTAAAAGCTGCACTT 59.357 34.615 20.86 0.00 40.85 3.16
4025 4998 6.015940 AGTGCTATTTTTCTAAAAGCTGCACT 60.016 34.615 22.91 22.91 44.32 4.40
4026 4999 6.152379 AGTGCTATTTTTCTAAAAGCTGCAC 58.848 36.000 20.73 20.73 42.30 4.57
4027 5000 6.331369 AGTGCTATTTTTCTAAAAGCTGCA 57.669 33.333 1.02 0.00 32.96 4.41
4028 5001 7.305474 TGTAGTGCTATTTTTCTAAAAGCTGC 58.695 34.615 0.00 0.00 32.96 5.25
4029 5002 8.507249 ACTGTAGTGCTATTTTTCTAAAAGCTG 58.493 33.333 0.00 0.00 32.96 4.24
4030 5003 8.622948 ACTGTAGTGCTATTTTTCTAAAAGCT 57.377 30.769 0.00 0.00 32.96 3.74
4035 5008 9.649167 GACCTAACTGTAGTGCTATTTTTCTAA 57.351 33.333 0.00 0.00 0.00 2.10
4036 5009 8.255905 GGACCTAACTGTAGTGCTATTTTTCTA 58.744 37.037 0.00 0.00 0.00 2.10
4037 5010 7.104290 GGACCTAACTGTAGTGCTATTTTTCT 58.896 38.462 0.00 0.00 0.00 2.52
4038 5011 6.315642 GGGACCTAACTGTAGTGCTATTTTTC 59.684 42.308 0.00 0.00 0.00 2.29
4039 5012 6.178324 GGGACCTAACTGTAGTGCTATTTTT 58.822 40.000 0.00 0.00 0.00 1.94
4040 5013 5.742063 GGGACCTAACTGTAGTGCTATTTT 58.258 41.667 0.00 0.00 0.00 1.82
4041 5014 5.354842 GGGACCTAACTGTAGTGCTATTT 57.645 43.478 0.00 0.00 0.00 1.40
4089 5062 2.510918 GCGAACTAGGGTTCCGCC 60.511 66.667 0.00 0.00 46.46 6.13
4090 5063 2.510918 GGCGAACTAGGGTTCCGC 60.511 66.667 0.00 0.00 46.46 5.54
4091 5064 0.529992 GATGGCGAACTAGGGTTCCG 60.530 60.000 0.00 0.00 46.46 4.30
4092 5065 0.529992 CGATGGCGAACTAGGGTTCC 60.530 60.000 0.00 0.00 46.46 3.62
4093 5066 1.152383 GCGATGGCGAACTAGGGTTC 61.152 60.000 0.00 0.00 45.91 3.62
4094 5067 1.153429 GCGATGGCGAACTAGGGTT 60.153 57.895 0.00 0.00 40.82 4.11
4095 5068 2.499685 GCGATGGCGAACTAGGGT 59.500 61.111 0.00 0.00 40.82 4.34
4096 5069 2.280186 GGCGATGGCGAACTAGGG 60.280 66.667 0.00 0.00 41.24 3.53
4106 5079 4.569180 AAGGGATGGCGGCGATGG 62.569 66.667 12.98 0.00 0.00 3.51
4107 5080 2.516930 AAAGGGATGGCGGCGATG 60.517 61.111 12.98 0.00 0.00 3.84
4108 5081 2.203209 GAAAGGGATGGCGGCGAT 60.203 61.111 12.98 0.00 0.00 4.58
4109 5082 2.966732 AAGAAAGGGATGGCGGCGA 61.967 57.895 12.98 0.00 0.00 5.54
4110 5083 2.438434 AAGAAAGGGATGGCGGCG 60.438 61.111 0.51 0.51 0.00 6.46
4111 5084 3.068729 GCAAGAAAGGGATGGCGGC 62.069 63.158 0.00 0.00 0.00 6.53
4112 5085 2.418083 GGCAAGAAAGGGATGGCGG 61.418 63.158 0.00 0.00 0.00 6.13
4113 5086 0.967380 AAGGCAAGAAAGGGATGGCG 60.967 55.000 0.00 0.00 43.66 5.69
4114 5087 0.820226 GAAGGCAAGAAAGGGATGGC 59.180 55.000 0.00 0.00 39.69 4.40
4115 5088 1.006400 AGGAAGGCAAGAAAGGGATGG 59.994 52.381 0.00 0.00 0.00 3.51
4116 5089 2.373224 GAGGAAGGCAAGAAAGGGATG 58.627 52.381 0.00 0.00 0.00 3.51
4117 5090 1.286257 GGAGGAAGGCAAGAAAGGGAT 59.714 52.381 0.00 0.00 0.00 3.85
4118 5091 0.698818 GGAGGAAGGCAAGAAAGGGA 59.301 55.000 0.00 0.00 0.00 4.20
4119 5092 0.701147 AGGAGGAAGGCAAGAAAGGG 59.299 55.000 0.00 0.00 0.00 3.95
4120 5093 1.340502 GGAGGAGGAAGGCAAGAAAGG 60.341 57.143 0.00 0.00 0.00 3.11
4121 5094 1.340502 GGGAGGAGGAAGGCAAGAAAG 60.341 57.143 0.00 0.00 0.00 2.62
4122 5095 0.698818 GGGAGGAGGAAGGCAAGAAA 59.301 55.000 0.00 0.00 0.00 2.52
4123 5096 0.178861 AGGGAGGAGGAAGGCAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
4124 5097 0.178861 AAGGGAGGAGGAAGGCAAGA 60.179 55.000 0.00 0.00 0.00 3.02
4125 5098 0.034670 CAAGGGAGGAGGAAGGCAAG 60.035 60.000 0.00 0.00 0.00 4.01
4126 5099 2.078452 CAAGGGAGGAGGAAGGCAA 58.922 57.895 0.00 0.00 0.00 4.52
4127 5100 2.606587 GCAAGGGAGGAGGAAGGCA 61.607 63.158 0.00 0.00 0.00 4.75
4128 5101 2.273776 GCAAGGGAGGAGGAAGGC 59.726 66.667 0.00 0.00 0.00 4.35
4129 5102 3.002371 GGCAAGGGAGGAGGAAGG 58.998 66.667 0.00 0.00 0.00 3.46
4130 5103 2.586792 CGGCAAGGGAGGAGGAAG 59.413 66.667 0.00 0.00 0.00 3.46
4131 5104 3.717294 GCGGCAAGGGAGGAGGAA 61.717 66.667 0.00 0.00 0.00 3.36
4134 5107 4.168291 GAGGCGGCAAGGGAGGAG 62.168 72.222 13.08 0.00 0.00 3.69
4137 5110 4.479993 CTGGAGGCGGCAAGGGAG 62.480 72.222 13.08 0.00 0.00 4.30
4141 5114 4.785453 GTCCCTGGAGGCGGCAAG 62.785 72.222 13.08 5.51 34.51 4.01
4147 5120 4.083862 GACGGTGTCCCTGGAGGC 62.084 72.222 0.00 0.00 34.51 4.70
4148 5121 3.760035 CGACGGTGTCCCTGGAGG 61.760 72.222 0.00 0.00 0.00 4.30
4149 5122 2.989824 ACGACGGTGTCCCTGGAG 60.990 66.667 0.00 0.00 0.00 3.86
4150 5123 3.299977 CACGACGGTGTCCCTGGA 61.300 66.667 0.00 0.00 39.38 3.86
4152 5125 3.800685 TTGCACGACGGTGTCCCTG 62.801 63.158 0.00 0.00 46.13 4.45
4153 5126 2.989055 CTTTGCACGACGGTGTCCCT 62.989 60.000 0.00 0.00 46.13 4.20
4154 5127 2.589442 TTTGCACGACGGTGTCCC 60.589 61.111 0.00 0.00 46.13 4.46
4155 5128 2.935955 CTTTGCACGACGGTGTCC 59.064 61.111 0.00 0.00 46.13 4.02
4156 5129 2.248431 GCTTTGCACGACGGTGTC 59.752 61.111 0.00 0.00 46.13 3.67
4157 5130 3.276846 GGCTTTGCACGACGGTGT 61.277 61.111 0.00 0.00 46.13 4.16
4159 5132 4.555709 TGGGCTTTGCACGACGGT 62.556 61.111 0.00 0.00 32.76 4.83
4160 5133 4.025401 GTGGGCTTTGCACGACGG 62.025 66.667 0.00 0.00 32.76 4.79
4161 5134 4.368808 CGTGGGCTTTGCACGACG 62.369 66.667 8.07 0.00 44.06 5.12
4162 5135 4.683334 GCGTGGGCTTTGCACGAC 62.683 66.667 16.36 5.69 44.06 4.34
4165 5138 4.980903 CACGCGTGGGCTTTGCAC 62.981 66.667 31.15 0.00 36.88 4.57
4227 5200 4.944372 GTAGTCCATCCCGCGCCG 62.944 72.222 0.00 0.00 0.00 6.46
4228 5201 3.379865 TTGTAGTCCATCCCGCGCC 62.380 63.158 0.00 0.00 0.00 6.53
4229 5202 2.171725 GTTGTAGTCCATCCCGCGC 61.172 63.158 0.00 0.00 0.00 6.86
4230 5203 0.390603 TTGTTGTAGTCCATCCCGCG 60.391 55.000 0.00 0.00 0.00 6.46
4231 5204 1.467342 GTTTGTTGTAGTCCATCCCGC 59.533 52.381 0.00 0.00 0.00 6.13
4232 5205 2.482721 GTGTTTGTTGTAGTCCATCCCG 59.517 50.000 0.00 0.00 0.00 5.14
4233 5206 2.817844 GGTGTTTGTTGTAGTCCATCCC 59.182 50.000 0.00 0.00 0.00 3.85
4234 5207 2.817844 GGGTGTTTGTTGTAGTCCATCC 59.182 50.000 0.00 0.00 0.00 3.51
4235 5208 2.817844 GGGGTGTTTGTTGTAGTCCATC 59.182 50.000 0.00 0.00 0.00 3.51
4236 5209 2.175931 TGGGGTGTTTGTTGTAGTCCAT 59.824 45.455 0.00 0.00 0.00 3.41
4237 5210 1.564818 TGGGGTGTTTGTTGTAGTCCA 59.435 47.619 0.00 0.00 0.00 4.02
4238 5211 1.951602 GTGGGGTGTTTGTTGTAGTCC 59.048 52.381 0.00 0.00 0.00 3.85
4239 5212 2.927028 AGTGGGGTGTTTGTTGTAGTC 58.073 47.619 0.00 0.00 0.00 2.59
4240 5213 4.717279 ATAGTGGGGTGTTTGTTGTAGT 57.283 40.909 0.00 0.00 0.00 2.73
4241 5214 4.939439 GGTATAGTGGGGTGTTTGTTGTAG 59.061 45.833 0.00 0.00 0.00 2.74
4242 5215 4.350225 TGGTATAGTGGGGTGTTTGTTGTA 59.650 41.667 0.00 0.00 0.00 2.41
4243 5216 3.138653 TGGTATAGTGGGGTGTTTGTTGT 59.861 43.478 0.00 0.00 0.00 3.32
4244 5217 3.757270 TGGTATAGTGGGGTGTTTGTTG 58.243 45.455 0.00 0.00 0.00 3.33
4245 5218 4.146564 GTTGGTATAGTGGGGTGTTTGTT 58.853 43.478 0.00 0.00 0.00 2.83
4246 5219 3.138653 TGTTGGTATAGTGGGGTGTTTGT 59.861 43.478 0.00 0.00 0.00 2.83
4247 5220 3.504520 GTGTTGGTATAGTGGGGTGTTTG 59.495 47.826 0.00 0.00 0.00 2.93
4248 5221 3.138653 TGTGTTGGTATAGTGGGGTGTTT 59.861 43.478 0.00 0.00 0.00 2.83
4249 5222 2.712087 TGTGTTGGTATAGTGGGGTGTT 59.288 45.455 0.00 0.00 0.00 3.32
4250 5223 2.340731 TGTGTTGGTATAGTGGGGTGT 58.659 47.619 0.00 0.00 0.00 4.16
4251 5224 3.244770 ACTTGTGTTGGTATAGTGGGGTG 60.245 47.826 0.00 0.00 0.00 4.61
4252 5225 2.983898 ACTTGTGTTGGTATAGTGGGGT 59.016 45.455 0.00 0.00 0.00 4.95
4253 5226 3.263425 AGACTTGTGTTGGTATAGTGGGG 59.737 47.826 0.00 0.00 0.00 4.96
4254 5227 4.553330 AGACTTGTGTTGGTATAGTGGG 57.447 45.455 0.00 0.00 0.00 4.61
4255 5228 5.109903 GCTAGACTTGTGTTGGTATAGTGG 58.890 45.833 0.00 0.00 32.06 4.00
4256 5229 5.720202 TGCTAGACTTGTGTTGGTATAGTG 58.280 41.667 0.00 0.00 32.06 2.74
4257 5230 5.995565 TGCTAGACTTGTGTTGGTATAGT 57.004 39.130 0.00 0.00 32.06 2.12
4258 5231 5.288712 CGTTGCTAGACTTGTGTTGGTATAG 59.711 44.000 0.00 0.00 32.45 1.31
4259 5232 5.047872 TCGTTGCTAGACTTGTGTTGGTATA 60.048 40.000 0.00 0.00 0.00 1.47
4260 5233 3.994392 CGTTGCTAGACTTGTGTTGGTAT 59.006 43.478 0.00 0.00 0.00 2.73
4261 5234 3.068448 TCGTTGCTAGACTTGTGTTGGTA 59.932 43.478 0.00 0.00 0.00 3.25
4262 5235 2.159014 TCGTTGCTAGACTTGTGTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
4263 5236 2.479837 TCGTTGCTAGACTTGTGTTGG 58.520 47.619 0.00 0.00 0.00 3.77
4264 5237 3.740832 TCATCGTTGCTAGACTTGTGTTG 59.259 43.478 0.00 0.00 0.00 3.33
4265 5238 3.990092 TCATCGTTGCTAGACTTGTGTT 58.010 40.909 0.00 0.00 0.00 3.32
4266 5239 3.660501 TCATCGTTGCTAGACTTGTGT 57.339 42.857 0.00 0.00 0.00 3.72
4267 5240 4.176271 TCATCATCGTTGCTAGACTTGTG 58.824 43.478 0.00 0.00 0.00 3.33
4268 5241 4.456280 TCATCATCGTTGCTAGACTTGT 57.544 40.909 0.00 0.00 0.00 3.16
4269 5242 6.476706 TGTTATCATCATCGTTGCTAGACTTG 59.523 38.462 0.00 0.00 0.00 3.16
4270 5243 6.573434 TGTTATCATCATCGTTGCTAGACTT 58.427 36.000 0.00 0.00 0.00 3.01
4271 5244 6.149129 TGTTATCATCATCGTTGCTAGACT 57.851 37.500 0.00 0.00 0.00 3.24
4272 5245 6.422100 ACATGTTATCATCATCGTTGCTAGAC 59.578 38.462 0.00 0.00 31.15 2.59
4273 5246 6.421801 CACATGTTATCATCATCGTTGCTAGA 59.578 38.462 0.00 0.00 31.15 2.43
4274 5247 6.201615 ACACATGTTATCATCATCGTTGCTAG 59.798 38.462 0.00 0.00 31.15 3.42
4275 5248 6.048509 ACACATGTTATCATCATCGTTGCTA 58.951 36.000 0.00 0.00 31.15 3.49
4276 5249 4.877823 ACACATGTTATCATCATCGTTGCT 59.122 37.500 0.00 0.00 31.15 3.91
4277 5250 5.160699 ACACATGTTATCATCATCGTTGC 57.839 39.130 0.00 0.00 31.15 4.17
4278 5251 6.545508 ACAACACATGTTATCATCATCGTTG 58.454 36.000 13.61 13.61 40.06 4.10
4279 5252 6.741992 ACAACACATGTTATCATCATCGTT 57.258 33.333 0.00 0.00 40.06 3.85
4288 5261 7.093945 AGGATAACCCAAACAACACATGTTATC 60.094 37.037 0.00 0.00 43.59 1.75
4289 5262 6.723977 AGGATAACCCAAACAACACATGTTAT 59.276 34.615 0.00 0.00 43.59 1.89
4290 5263 6.071984 AGGATAACCCAAACAACACATGTTA 58.928 36.000 0.00 0.00 43.59 2.41
4291 5264 4.898861 AGGATAACCCAAACAACACATGTT 59.101 37.500 0.00 0.00 45.10 2.71
4292 5265 4.479158 AGGATAACCCAAACAACACATGT 58.521 39.130 0.00 0.00 40.20 3.21
4293 5266 4.082245 GGAGGATAACCCAAACAACACATG 60.082 45.833 0.00 0.00 37.41 3.21
4294 5267 4.086457 GGAGGATAACCCAAACAACACAT 58.914 43.478 0.00 0.00 37.41 3.21
4295 5268 3.492337 GGAGGATAACCCAAACAACACA 58.508 45.455 0.00 0.00 37.41 3.72
4296 5269 2.823747 GGGAGGATAACCCAAACAACAC 59.176 50.000 0.00 0.00 46.05 3.32
4297 5270 3.163616 GGGAGGATAACCCAAACAACA 57.836 47.619 0.00 0.00 46.05 3.33
4305 5278 1.060743 GGGAGGTGGGAGGATAACCC 61.061 65.000 0.00 0.00 46.87 4.11
4306 5279 1.060743 GGGGAGGTGGGAGGATAACC 61.061 65.000 0.00 0.00 0.00 2.85
4307 5280 1.060743 GGGGGAGGTGGGAGGATAAC 61.061 65.000 0.00 0.00 0.00 1.89
4308 5281 1.320512 GGGGGAGGTGGGAGGATAA 59.679 63.158 0.00 0.00 0.00 1.75
4309 5282 1.950000 TGGGGGAGGTGGGAGGATA 60.950 63.158 0.00 0.00 0.00 2.59
4310 5283 3.300962 TGGGGGAGGTGGGAGGAT 61.301 66.667 0.00 0.00 0.00 3.24
4311 5284 4.348495 GTGGGGGAGGTGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
4312 5285 2.486410 TAAGTGGGGGAGGTGGGAGG 62.486 65.000 0.00 0.00 0.00 4.30
4313 5286 0.327576 ATAAGTGGGGGAGGTGGGAG 60.328 60.000 0.00 0.00 0.00 4.30
4314 5287 1.028638 TATAAGTGGGGGAGGTGGGA 58.971 55.000 0.00 0.00 0.00 4.37
4315 5288 1.985895 GATATAAGTGGGGGAGGTGGG 59.014 57.143 0.00 0.00 0.00 4.61
4628 5601 3.907481 AAATTTTCGGCCGGTGCGC 62.907 57.895 27.83 0.00 38.85 6.09
4629 5602 1.799916 GAAATTTTCGGCCGGTGCG 60.800 57.895 27.83 0.00 38.85 5.34
4630 5603 4.162640 GAAATTTTCGGCCGGTGC 57.837 55.556 27.83 4.28 0.00 5.01
4639 5612 0.879090 ACAGACCGGCCGAAATTTTC 59.121 50.000 30.73 12.41 0.00 2.29
4640 5613 3.030415 ACAGACCGGCCGAAATTTT 57.970 47.368 30.73 2.50 0.00 1.82
4641 5614 4.813346 ACAGACCGGCCGAAATTT 57.187 50.000 30.73 4.43 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.