Multiple sequence alignment - TraesCS6B01G378800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G378800 chr6B 100.000 4553 0 0 1 4553 653713742 653709190 0.000000e+00 8408
1 TraesCS6B01G378800 chr6B 88.491 1173 107 12 984 2142 653784432 653783274 0.000000e+00 1393
2 TraesCS6B01G378800 chr6B 83.405 1386 171 27 2298 3637 653772753 653771381 0.000000e+00 1230
3 TraesCS6B01G378800 chr6B 94.361 798 24 8 1 788 653786889 653786103 0.000000e+00 1205
4 TraesCS6B01G378800 chr6B 81.010 1564 177 56 2368 3866 653109048 653107540 0.000000e+00 1133
5 TraesCS6B01G378800 chr6B 89.262 922 75 10 2921 3829 653851161 653850251 0.000000e+00 1133
6 TraesCS6B01G378800 chr6B 89.987 799 63 8 2968 3757 653183610 653182820 0.000000e+00 1016
7 TraesCS6B01G378800 chr6B 76.155 1883 284 101 426 2210 653231068 653229253 0.000000e+00 837
8 TraesCS6B01G378800 chr6B 86.985 753 87 8 1412 2162 653763339 653762596 0.000000e+00 837
9 TraesCS6B01G378800 chr6B 80.182 1100 170 28 1164 2221 653110305 653109212 0.000000e+00 780
10 TraesCS6B01G378800 chr6B 79.068 1094 166 35 1161 2203 653852916 653851835 0.000000e+00 693
11 TraesCS6B01G378800 chr6B 87.145 599 71 1 2922 3514 653220191 653220789 0.000000e+00 675
12 TraesCS6B01G378800 chr6B 89.549 488 34 12 3632 4114 653767336 653766861 1.810000e-168 603
13 TraesCS6B01G378800 chr6B 80.429 792 114 29 1164 1926 653338382 653337603 2.380000e-157 566
14 TraesCS6B01G378800 chr6B 86.374 455 40 9 3757 4199 653182723 653182279 1.150000e-130 477
15 TraesCS6B01G378800 chr6B 83.183 553 55 15 2370 2885 653851718 653851167 5.330000e-129 472
16 TraesCS6B01G378800 chr6B 82.246 552 62 14 2370 2885 653184196 653183645 1.160000e-120 444
17 TraesCS6B01G378800 chr6B 89.744 351 22 11 3769 4114 653759951 653759610 1.940000e-118 436
18 TraesCS6B01G378800 chr6B 91.026 312 24 4 4120 4430 653759409 653759101 7.040000e-113 418
19 TraesCS6B01G378800 chr6B 91.026 312 24 4 4120 4430 653849492 653849184 7.040000e-113 418
20 TraesCS6B01G378800 chr6B 80.034 596 76 22 1648 2203 653184905 653184313 7.090000e-108 401
21 TraesCS6B01G378800 chr6B 90.615 309 18 6 4130 4430 653766674 653766369 2.550000e-107 399
22 TraesCS6B01G378800 chr6B 87.066 317 37 4 1599 1913 653214414 653214728 5.600000e-94 355
23 TraesCS6B01G378800 chr6B 83.038 395 63 3 1792 2185 653417313 653416922 5.600000e-94 355
24 TraesCS6B01G378800 chr6B 90.262 267 18 5 3850 4115 653849951 653849692 4.360000e-90 342
25 TraesCS6B01G378800 chr6B 85.762 302 41 2 1921 2221 653216188 653216488 7.350000e-83 318
26 TraesCS6B01G378800 chr6B 79.043 439 54 22 420 843 653765180 653764765 2.700000e-67 267
27 TraesCS6B01G378800 chr6B 92.222 180 10 4 4253 4430 653182278 653182101 7.560000e-63 252
28 TraesCS6B01G378800 chr6B 77.474 475 62 35 420 864 653181768 653181309 4.550000e-60 243
29 TraesCS6B01G378800 chr6B 89.674 184 14 4 1164 1345 653758057 653757877 3.540000e-56 230
30 TraesCS6B01G378800 chr6B 88.587 184 16 4 1164 1345 653848140 653847960 7.670000e-53 219
31 TraesCS6B01G378800 chr6B 96.667 120 4 0 4425 4544 46511993 46512112 2.780000e-47 200
32 TraesCS6B01G378800 chr6B 96.581 117 4 0 4424 4540 534978511 534978395 1.290000e-45 195
33 TraesCS6B01G378800 chr6B 88.776 98 2 6 775 864 653764614 653764518 1.340000e-20 111
34 TraesCS6B01G378800 chr6D 89.737 2280 143 35 1 2251 432911612 432909395 0.000000e+00 2830
35 TraesCS6B01G378800 chr6D 82.961 1479 161 39 2298 3723 432909382 432907942 0.000000e+00 1251
36 TraesCS6B01G378800 chr6D 82.606 1397 177 36 2368 3711 432965652 432964269 0.000000e+00 1173
37 TraesCS6B01G378800 chr6D 77.553 1283 211 46 899 2116 432967373 432966103 0.000000e+00 702
38 TraesCS6B01G378800 chr6D 77.355 1104 192 31 1167 2221 433581759 433582853 6.520000e-168 601
39 TraesCS6B01G378800 chr6D 78.279 732 119 27 870 1570 433256592 433255870 7.000000e-118 435
40 TraesCS6B01G378800 chr6D 78.207 569 86 17 2370 2913 433582995 433583550 3.400000e-86 329
41 TraesCS6B01G378800 chr6D 92.000 75 4 1 4025 4097 37464424 37464498 2.240000e-18 104
42 TraesCS6B01G378800 chr6A 87.776 1358 126 22 2370 3711 579024565 579023232 0.000000e+00 1552
43 TraesCS6B01G378800 chr6A 83.993 1187 145 18 2370 3514 579111617 579110434 0.000000e+00 1098
44 TraesCS6B01G378800 chr6A 79.825 1026 145 26 1230 2203 579112758 579111743 0.000000e+00 691
45 TraesCS6B01G378800 chr6A 82.812 576 85 7 1159 1726 579034430 579033861 1.890000e-138 503
46 TraesCS6B01G378800 chr6A 87.799 418 29 12 3519 3921 579102227 579101817 1.920000e-128 470
47 TraesCS6B01G378800 chr6A 85.467 289 39 2 1935 2220 579024959 579024671 9.580000e-77 298
48 TraesCS6B01G378800 chr6A 78.615 491 67 18 1764 2230 579767812 579768288 1.600000e-74 291
49 TraesCS6B01G378800 chr6A 92.308 91 7 0 4025 4115 48906490 48906580 3.700000e-26 130
50 TraesCS6B01G378800 chr1B 96.721 122 4 0 4421 4542 72765804 72765925 2.150000e-48 204
51 TraesCS6B01G378800 chr1B 96.748 123 2 2 4421 4542 591426332 591426211 2.150000e-48 204
52 TraesCS6B01G378800 chr1B 95.902 122 5 0 4421 4542 72798692 72798813 9.990000e-47 198
53 TraesCS6B01G378800 chr1B 95.902 122 5 0 4421 4542 72876073 72876194 9.990000e-47 198
54 TraesCS6B01G378800 chr5B 96.721 122 2 2 4425 4544 469125872 469125993 7.720000e-48 202
55 TraesCS6B01G378800 chr4A 96.667 120 4 0 4425 4544 660714289 660714408 2.780000e-47 200
56 TraesCS6B01G378800 chr3B 93.182 132 8 1 4415 4545 545060682 545060813 4.650000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G378800 chr6B 653709190 653713742 4552 True 8408.000000 8408 100.000000 1 4553 1 chr6B.!!$R5 4552
1 TraesCS6B01G378800 chr6B 653783274 653786889 3615 True 1299.000000 1393 91.426000 1 2142 2 chr6B.!!$R10 2141
2 TraesCS6B01G378800 chr6B 653771381 653772753 1372 True 1230.000000 1230 83.405000 2298 3637 1 chr6B.!!$R6 1339
3 TraesCS6B01G378800 chr6B 653107540 653110305 2765 True 956.500000 1133 80.596000 1164 3866 2 chr6B.!!$R7 2702
4 TraesCS6B01G378800 chr6B 653229253 653231068 1815 True 837.000000 837 76.155000 426 2210 1 chr6B.!!$R2 1784
5 TraesCS6B01G378800 chr6B 653337603 653338382 779 True 566.000000 566 80.429000 1164 1926 1 chr6B.!!$R3 762
6 TraesCS6B01G378800 chr6B 653847960 653852916 4956 True 546.166667 1133 86.898000 1161 4430 6 chr6B.!!$R11 3269
7 TraesCS6B01G378800 chr6B 653181309 653184905 3596 True 472.166667 1016 84.722833 420 4430 6 chr6B.!!$R8 4010
8 TraesCS6B01G378800 chr6B 653214414 653220789 6375 False 449.333333 675 86.657667 1599 3514 3 chr6B.!!$F2 1915
9 TraesCS6B01G378800 chr6B 653757877 653767336 9459 True 412.625000 837 88.176500 420 4430 8 chr6B.!!$R9 4010
10 TraesCS6B01G378800 chr6D 432907942 432911612 3670 True 2040.500000 2830 86.349000 1 3723 2 chr6D.!!$R2 3722
11 TraesCS6B01G378800 chr6D 432964269 432967373 3104 True 937.500000 1173 80.079500 899 3711 2 chr6D.!!$R3 2812
12 TraesCS6B01G378800 chr6D 433581759 433583550 1791 False 465.000000 601 77.781000 1167 2913 2 chr6D.!!$F2 1746
13 TraesCS6B01G378800 chr6D 433255870 433256592 722 True 435.000000 435 78.279000 870 1570 1 chr6D.!!$R1 700
14 TraesCS6B01G378800 chr6A 579023232 579024959 1727 True 925.000000 1552 86.621500 1935 3711 2 chr6A.!!$R3 1776
15 TraesCS6B01G378800 chr6A 579110434 579112758 2324 True 894.500000 1098 81.909000 1230 3514 2 chr6A.!!$R4 2284
16 TraesCS6B01G378800 chr6A 579033861 579034430 569 True 503.000000 503 82.812000 1159 1726 1 chr6A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 3142 0.036732 TTCCTGCTGAACTCCGCAAT 59.963 50.0 0.0 0.0 35.46 3.56 F
1110 5104 0.034670 GCTGCCAGGAGACTTCCAAT 60.035 55.0 0.0 0.0 46.64 3.16 F
2531 10405 0.174617 CTTGAAGCTCTCTCCCGTCC 59.825 60.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 8300 0.250901 AGTGATTGTGTGCAGTCCCC 60.251 55.0 0.0 0.0 31.28 4.81 R
2620 11051 0.545309 AGCCAGAGCCAGGTAAGACA 60.545 55.0 0.0 0.0 41.25 3.41 R
4115 15399 0.036952 CATCACGGCTGAGTGGACTT 60.037 55.0 0.0 0.0 42.10 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
456 2201 3.290710 GGGTTGATGGTGTAATCATGCT 58.709 45.455 0.00 0.00 36.48 3.79
485 2234 4.148838 TGAAAGATCCAACGGAAAACCAT 58.851 39.130 0.00 0.00 34.34 3.55
662 2433 9.920946 AAAAGATAAAGATAAGCATCCCTTGTA 57.079 29.630 0.00 0.00 34.95 2.41
665 2436 9.512588 AGATAAAGATAAGCATCCCTTGTATTG 57.487 33.333 0.00 0.00 34.95 1.90
666 2437 9.289782 GATAAAGATAAGCATCCCTTGTATTGT 57.710 33.333 0.00 0.00 34.95 2.71
707 2487 4.737054 CAGGACCATTACAAATGTGCTTC 58.263 43.478 0.00 0.00 0.00 3.86
710 2490 4.380867 GGACCATTACAAATGTGCTTCTGG 60.381 45.833 0.00 0.00 0.00 3.86
826 2827 0.098905 CGACTTCTCCGCTTGATCGA 59.901 55.000 0.00 0.00 0.00 3.59
922 3127 6.363167 TTGATGGCTTTTCATTCATTTCCT 57.637 33.333 0.00 0.00 0.00 3.36
937 3142 0.036732 TTCCTGCTGAACTCCGCAAT 59.963 50.000 0.00 0.00 35.46 3.56
1032 5009 6.183360 TGTGCCGAAAATTTATACTGATGTCC 60.183 38.462 0.00 0.00 0.00 4.02
1048 5030 3.832615 TGTCCACATCTGATCATCAGG 57.167 47.619 14.96 2.11 44.39 3.86
1074 5056 2.484770 GGCGGACAATTCTACCTGCATA 60.485 50.000 0.00 0.00 0.00 3.14
1110 5104 0.034670 GCTGCCAGGAGACTTCCAAT 60.035 55.000 0.00 0.00 46.64 3.16
1116 5110 3.321968 GCCAGGAGACTTCCAATTGTTTT 59.678 43.478 4.43 0.00 46.64 2.43
1118 5112 5.564848 GCCAGGAGACTTCCAATTGTTTTAC 60.565 44.000 4.43 0.00 46.64 2.01
1195 5198 2.581354 GAGTGGAGGCGATGCTGT 59.419 61.111 0.00 0.00 0.00 4.40
1242 5245 1.006454 GGTCGGAATAGGCGCCTAC 60.006 63.158 37.53 25.72 0.00 3.18
1335 5499 5.635417 TCATATCTTATGTCCTCTCTGCG 57.365 43.478 0.00 0.00 0.00 5.18
1347 5511 1.961277 CTCTGCGTTTGGCTCCGTT 60.961 57.895 0.00 0.00 44.05 4.44
1351 5515 2.978010 CGTTTGGCTCCGTTGGCT 60.978 61.111 0.75 0.00 0.00 4.75
1373 5537 5.698545 GCTATGAGTTTGATGTCACTATCCC 59.301 44.000 0.00 0.00 0.00 3.85
1436 5620 7.235399 TCACACATACATGGTCATAGTATCCAT 59.765 37.037 0.00 0.00 41.88 3.41
1560 5751 6.187682 AGGAATTTGGATAGTTTACCTGGTG 58.812 40.000 10.23 0.00 0.00 4.17
1878 6105 0.401395 TGGAGGAGGTTCAACAGGGT 60.401 55.000 0.00 0.00 0.00 4.34
1976 7655 4.794278 TTAAGTTGCTCAGGTGTCGATA 57.206 40.909 0.00 0.00 0.00 2.92
2033 7712 8.868522 ATAGAGACATTCAAATTTGTCAGGAA 57.131 30.769 17.47 5.01 43.72 3.36
2071 7750 2.160417 GGTGAACATGAAAGAGCCTTCG 59.840 50.000 0.00 0.00 0.00 3.79
2072 7751 1.806542 TGAACATGAAAGAGCCTTCGC 59.193 47.619 0.00 0.00 0.00 4.70
2251 8256 2.086869 ACATTGCTGTTCGGAATCCTG 58.913 47.619 0.00 0.00 30.52 3.86
2254 8259 0.321564 TGCTGTTCGGAATCCTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
2263 8268 6.126883 TGTTCGGAATCCTGTGGAGTATATTT 60.127 38.462 0.00 0.00 34.05 1.40
2265 8270 6.895782 TCGGAATCCTGTGGAGTATATTTTT 58.104 36.000 0.00 0.00 34.05 1.94
2286 8291 4.986054 TTTTGAGCCCTAACACTAAGGA 57.014 40.909 0.00 0.00 36.08 3.36
2287 8292 4.553330 TTTGAGCCCTAACACTAAGGAG 57.447 45.455 0.00 0.00 36.08 3.69
2288 8293 3.185880 TGAGCCCTAACACTAAGGAGT 57.814 47.619 0.00 0.00 36.08 3.85
2289 8294 4.326600 TGAGCCCTAACACTAAGGAGTA 57.673 45.455 0.00 0.00 36.08 2.59
2290 8295 4.880164 TGAGCCCTAACACTAAGGAGTAT 58.120 43.478 0.00 0.00 36.08 2.12
2291 8296 4.894114 TGAGCCCTAACACTAAGGAGTATC 59.106 45.833 0.00 0.00 36.08 2.24
2293 8298 3.005578 GCCCTAACACTAAGGAGTATCGG 59.994 52.174 0.00 0.00 36.08 4.18
2294 8299 3.005578 CCCTAACACTAAGGAGTATCGGC 59.994 52.174 0.00 0.00 36.08 5.54
2295 8300 2.865343 AACACTAAGGAGTATCGGCG 57.135 50.000 0.00 0.00 33.32 6.46
2324 9677 3.189080 GCACACAATCACTTGCATCTACA 59.811 43.478 0.00 0.00 35.69 2.74
2337 9690 3.191162 TGCATCTACAATTGTCAACAGGC 59.809 43.478 15.85 12.69 0.00 4.85
2366 9728 3.982576 AAAGCCAGGACGTAAACAAAG 57.017 42.857 0.00 0.00 0.00 2.77
2531 10405 0.174617 CTTGAAGCTCTCTCCCGTCC 59.825 60.000 0.00 0.00 0.00 4.79
2630 11061 3.754188 GCTCATTGCTTGTCTTACCTG 57.246 47.619 0.00 0.00 38.95 4.00
2633 11064 2.040278 TCATTGCTTGTCTTACCTGGCT 59.960 45.455 0.00 0.00 0.00 4.75
2761 11741 1.144913 AGCAAAGGCACAACTTCCCTA 59.855 47.619 0.00 0.00 44.61 3.53
2864 11844 2.989639 CCACGGCCATCCTTGAGA 59.010 61.111 2.24 0.00 33.76 3.27
2886 11866 0.682209 AGGCATCTGCACCATCAACC 60.682 55.000 4.33 0.00 44.36 3.77
2931 13757 1.153524 TGCATGGTGGCAGGTCTTT 59.846 52.632 0.00 0.00 39.25 2.52
3025 13863 3.551863 CCGAGCTACTTCCTGATGATGAC 60.552 52.174 0.00 0.00 0.00 3.06
3031 13869 2.093288 ACTTCCTGATGATGACGCATGT 60.093 45.455 0.00 0.00 0.00 3.21
3067 13905 4.589908 ACAACAAAGTCAAGAAGGACACT 58.410 39.130 0.00 0.00 40.29 3.55
3115 13962 4.386951 CCGGTGTCGCCCATGTCA 62.387 66.667 0.00 0.00 34.56 3.58
3272 14119 1.453155 CGGGTTTTGGTCAGAGATGG 58.547 55.000 0.00 0.00 0.00 3.51
3357 14210 2.025767 CTGATCACGCTCCTCTGGGG 62.026 65.000 0.00 0.00 0.00 4.96
3388 14241 1.338020 CACATCGGGATCATCGACAGA 59.662 52.381 11.63 0.00 39.55 3.41
3413 14266 2.516930 ACACCGCTGCAAGTGCTT 60.517 55.556 16.95 0.00 44.90 3.91
3474 14332 4.024302 CACACACTGATATGCATGCTTAGG 60.024 45.833 20.33 12.83 0.00 2.69
3514 14376 2.933906 TCGTTGTTCTCTTGGTTGTGAC 59.066 45.455 0.00 0.00 0.00 3.67
3519 14381 3.689161 TGTTCTCTTGGTTGTGACTTGTG 59.311 43.478 0.00 0.00 0.00 3.33
3681 14571 2.297033 GCTTCTGGATTGTGGCTTTTCA 59.703 45.455 0.00 0.00 0.00 2.69
3695 14585 4.237724 GGCTTTTCAAGTGCCAAAGATAC 58.762 43.478 0.00 0.00 45.46 2.24
3722 14612 5.121221 AGTTTGTGGTGCTATTTTACTGC 57.879 39.130 0.00 0.00 0.00 4.40
3723 14613 4.582656 AGTTTGTGGTGCTATTTTACTGCA 59.417 37.500 0.00 0.00 0.00 4.41
3724 14614 4.764679 TTGTGGTGCTATTTTACTGCAG 57.235 40.909 13.48 13.48 37.39 4.41
3741 14631 1.457346 CAGCTTCTGGGAATGTGACC 58.543 55.000 0.00 0.00 0.00 4.02
3842 14849 0.037326 GTCCATGTCGTTGAGGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
3848 14855 0.798776 GTCGTTGAGGAGCACAATGG 59.201 55.000 0.00 0.00 35.68 3.16
3985 15264 2.791927 CCGCATCGAGTCGAGTCA 59.208 61.111 21.36 7.81 39.91 3.41
3996 15275 0.456312 GTCGAGTCATGGGTCGTCAC 60.456 60.000 14.66 5.88 37.46 3.67
4001 15280 2.509336 CATGGGTCGTCACTCGCC 60.509 66.667 0.00 0.00 39.67 5.54
4010 15289 1.595382 GTCACTCGCCAGCACTGTT 60.595 57.895 0.00 0.00 0.00 3.16
4024 15304 2.263077 CACTGTTCACCTCATACGCTC 58.737 52.381 0.00 0.00 0.00 5.03
4034 15314 3.006967 ACCTCATACGCTCTGAAGTTTGT 59.993 43.478 0.00 0.00 0.00 2.83
4099 15383 1.427368 AGGGAAATACTGCACCCACAA 59.573 47.619 10.23 0.00 44.25 3.33
4115 15399 3.628487 CCCACAAGAAAAGTACGGTTTCA 59.372 43.478 20.39 0.00 37.43 2.69
4116 15400 4.096682 CCCACAAGAAAAGTACGGTTTCAA 59.903 41.667 20.39 0.00 37.43 2.69
4202 15681 1.416049 CGTGTCGCAAATGTCCTCG 59.584 57.895 0.00 0.00 0.00 4.63
4249 15728 2.992114 AGGCGAACGAGCTGTCCT 60.992 61.111 0.00 0.00 37.29 3.85
4283 15762 2.086251 ACCGACGCAGTTTTACGGGA 62.086 55.000 0.00 0.00 46.43 5.14
4287 15766 1.666054 ACGCAGTTTTACGGGAAACA 58.334 45.000 15.31 0.00 37.78 2.83
4288 15767 2.223745 ACGCAGTTTTACGGGAAACAT 58.776 42.857 15.31 2.12 37.78 2.71
4290 15769 2.224549 CGCAGTTTTACGGGAAACATCA 59.775 45.455 15.31 0.00 40.98 3.07
4319 15798 6.490040 TCTCTTTTCAAAGGATTTTCGGATGT 59.510 34.615 0.00 0.00 35.03 3.06
4336 15815 2.691409 TGTATTTTGGAGAGCCGGAG 57.309 50.000 5.05 0.00 36.79 4.63
4344 15823 0.827368 GGAGAGCCGGAGTCTTTGAT 59.173 55.000 5.05 0.00 0.00 2.57
4427 15906 8.129211 GCGGATTTCATAGCACTAAATTTTACT 58.871 33.333 0.00 0.00 0.00 2.24
4428 15907 9.651718 CGGATTTCATAGCACTAAATTTTACTC 57.348 33.333 0.00 0.00 0.00 2.59
4429 15908 9.952188 GGATTTCATAGCACTAAATTTTACTCC 57.048 33.333 0.00 0.00 0.00 3.85
4430 15909 9.952188 GATTTCATAGCACTAAATTTTACTCCC 57.048 33.333 0.00 0.00 0.00 4.30
4431 15910 9.700831 ATTTCATAGCACTAAATTTTACTCCCT 57.299 29.630 0.00 0.00 0.00 4.20
4432 15911 8.732746 TTCATAGCACTAAATTTTACTCCCTC 57.267 34.615 0.00 0.00 0.00 4.30
4433 15912 7.280356 TCATAGCACTAAATTTTACTCCCTCC 58.720 38.462 0.00 0.00 0.00 4.30
4434 15913 4.514401 AGCACTAAATTTTACTCCCTCCG 58.486 43.478 0.00 0.00 0.00 4.63
4435 15914 4.019591 AGCACTAAATTTTACTCCCTCCGT 60.020 41.667 0.00 0.00 0.00 4.69
4436 15915 4.698780 GCACTAAATTTTACTCCCTCCGTT 59.301 41.667 0.00 0.00 0.00 4.44
4437 15916 5.163784 GCACTAAATTTTACTCCCTCCGTTC 60.164 44.000 0.00 0.00 0.00 3.95
4438 15917 5.063060 CACTAAATTTTACTCCCTCCGTTCG 59.937 44.000 0.00 0.00 0.00 3.95
4439 15918 2.685850 ATTTTACTCCCTCCGTTCGG 57.314 50.000 4.74 4.74 0.00 4.30
4440 15919 1.631405 TTTTACTCCCTCCGTTCGGA 58.369 50.000 13.34 13.34 0.00 4.55
4441 15920 1.631405 TTTACTCCCTCCGTTCGGAA 58.369 50.000 14.79 0.04 33.41 4.30
4442 15921 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
4443 15922 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4444 15923 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4445 15924 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4446 15925 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4447 15926 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
4448 15927 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
4449 15928 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
4450 15929 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
4451 15930 2.086869 TCCGTTCGGAATTACTCGTCT 58.913 47.619 11.66 0.00 0.00 4.18
4452 15931 3.270027 TCCGTTCGGAATTACTCGTCTA 58.730 45.455 11.66 0.00 0.00 2.59
4453 15932 3.689161 TCCGTTCGGAATTACTCGTCTAA 59.311 43.478 11.66 0.00 0.00 2.10
4454 15933 4.033684 CCGTTCGGAATTACTCGTCTAAG 58.966 47.826 5.19 0.00 0.00 2.18
4455 15934 4.201851 CCGTTCGGAATTACTCGTCTAAGA 60.202 45.833 5.19 0.00 0.00 2.10
4456 15935 5.327091 CGTTCGGAATTACTCGTCTAAGAA 58.673 41.667 0.00 0.00 0.00 2.52
4457 15936 5.796935 CGTTCGGAATTACTCGTCTAAGAAA 59.203 40.000 0.00 0.00 0.00 2.52
4458 15937 6.471519 CGTTCGGAATTACTCGTCTAAGAAAT 59.528 38.462 0.00 0.00 0.00 2.17
4459 15938 7.513196 CGTTCGGAATTACTCGTCTAAGAAATG 60.513 40.741 0.00 0.00 0.00 2.32
4460 15939 7.092137 TCGGAATTACTCGTCTAAGAAATGA 57.908 36.000 0.00 0.00 0.00 2.57
4461 15940 7.541162 TCGGAATTACTCGTCTAAGAAATGAA 58.459 34.615 0.00 0.00 0.00 2.57
4462 15941 8.195436 TCGGAATTACTCGTCTAAGAAATGAAT 58.805 33.333 0.00 0.00 0.00 2.57
4463 15942 8.269424 CGGAATTACTCGTCTAAGAAATGAATG 58.731 37.037 0.00 0.00 0.00 2.67
4464 15943 9.099454 GGAATTACTCGTCTAAGAAATGAATGT 57.901 33.333 0.00 0.00 0.00 2.71
4530 16009 9.834628 TCATTTTTATGACAAGTAATTCCGAAC 57.165 29.630 0.00 0.00 0.00 3.95
4531 16010 8.785101 CATTTTTATGACAAGTAATTCCGAACG 58.215 33.333 0.00 0.00 0.00 3.95
4532 16011 6.411630 TTTATGACAAGTAATTCCGAACGG 57.588 37.500 6.94 6.94 0.00 4.44
4533 16012 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
4534 16013 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
4535 16014 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4536 16015 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4537 16016 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4538 16017 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4539 16018 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4540 16019 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4541 16020 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
456 2201 4.900684 TCCGTTGGATCTTTCATGTGTAA 58.099 39.130 0.00 0.00 0.00 2.41
485 2234 9.042008 GTGGCTATGTCTTATCTTTATTCGAAA 57.958 33.333 0.00 0.00 0.00 3.46
505 2254 0.537143 CAAAGCACCCTGTGTGGCTA 60.537 55.000 0.00 0.00 45.55 3.93
662 2433 4.384208 GCAGGACCTGTCTTACCATACAAT 60.384 45.833 22.58 0.00 33.43 2.71
663 2434 3.055385 GCAGGACCTGTCTTACCATACAA 60.055 47.826 22.58 0.00 33.43 2.41
664 2435 2.500098 GCAGGACCTGTCTTACCATACA 59.500 50.000 22.58 0.00 33.43 2.29
665 2436 2.500098 TGCAGGACCTGTCTTACCATAC 59.500 50.000 22.58 2.63 33.43 2.39
666 2437 2.766263 CTGCAGGACCTGTCTTACCATA 59.234 50.000 22.58 0.00 33.43 2.74
694 2474 8.100791 ACTAGTAAATCCAGAAGCACATTTGTA 58.899 33.333 0.00 0.00 0.00 2.41
805 2806 1.551145 GATCAAGCGGAGAAGTCGAC 58.449 55.000 7.70 7.70 0.00 4.20
826 2827 1.916777 CCTTGTGGGTCGTAGGGGT 60.917 63.158 0.00 0.00 0.00 4.95
895 3099 9.165035 GGAAATGAATGAAAAGCCATCAAATTA 57.835 29.630 0.00 0.00 0.00 1.40
896 3100 7.886446 AGGAAATGAATGAAAAGCCATCAAATT 59.114 29.630 0.00 0.00 0.00 1.82
897 3101 7.335924 CAGGAAATGAATGAAAAGCCATCAAAT 59.664 33.333 0.00 0.00 0.00 2.32
922 3127 1.580942 GCAATTGCGGAGTTCAGCA 59.419 52.632 15.87 2.80 44.83 4.41
937 3142 2.434185 CGCTCTAACGGCAGGCAA 60.434 61.111 0.00 0.00 0.00 4.52
1048 5030 1.940613 GGTAGAATTGTCCGCCATGAC 59.059 52.381 0.00 0.00 35.77 3.06
1110 5104 0.938713 CGGTGCAGTCGGTAAAACAA 59.061 50.000 0.00 0.00 0.00 2.83
1116 5110 2.717044 CCCATCGGTGCAGTCGGTA 61.717 63.158 9.14 0.00 0.00 4.02
1118 5112 4.838152 CCCCATCGGTGCAGTCGG 62.838 72.222 9.14 0.00 0.00 4.79
1195 5198 1.573829 GCAAGGATGGCGTTGACGAA 61.574 55.000 7.85 0.00 41.21 3.85
1335 5499 0.451783 CATAGCCAACGGAGCCAAAC 59.548 55.000 0.00 0.00 0.00 2.93
1347 5511 4.558226 AGTGACATCAAACTCATAGCCA 57.442 40.909 0.00 0.00 0.00 4.75
1351 5515 5.905331 AGGGGATAGTGACATCAAACTCATA 59.095 40.000 0.00 0.00 0.00 2.15
1436 5620 2.816087 GCAGAAATCAGAACAAGGCAGA 59.184 45.455 0.00 0.00 0.00 4.26
1560 5751 2.733227 CGGAATTGCTTTGGTGCTGATC 60.733 50.000 0.00 0.00 0.00 2.92
1572 5763 6.575162 AGTTTACTTTCATTCGGAATTGCT 57.425 33.333 0.00 0.00 34.91 3.91
1739 5942 5.468409 TCACTTGCATGTTGATCGTTTTCTA 59.532 36.000 1.83 0.00 0.00 2.10
1746 5949 2.349590 TCCTCACTTGCATGTTGATCG 58.650 47.619 1.83 0.00 0.00 3.69
1976 7655 5.477984 ACATTGGTGAGTTTGTATCTTGCAT 59.522 36.000 0.00 0.00 0.00 3.96
2033 7712 4.574674 TCACCATCCTTTAGCAAGATGT 57.425 40.909 0.00 0.00 30.57 3.06
2071 7750 1.227639 AGCTCATCTGCAATCATCGC 58.772 50.000 0.00 0.00 34.99 4.58
2072 7751 3.560481 AGAAAGCTCATCTGCAATCATCG 59.440 43.478 1.42 0.00 34.99 3.84
2265 8270 4.349930 ACTCCTTAGTGTTAGGGCTCAAAA 59.650 41.667 0.00 0.00 33.57 2.44
2266 8271 3.908103 ACTCCTTAGTGTTAGGGCTCAAA 59.092 43.478 0.00 0.00 33.57 2.69
2268 8273 3.185880 ACTCCTTAGTGTTAGGGCTCA 57.814 47.619 0.00 0.00 33.57 4.26
2269 8274 4.023021 CGATACTCCTTAGTGTTAGGGCTC 60.023 50.000 0.00 0.00 36.36 4.70
2274 8279 3.304525 CCGCCGATACTCCTTAGTGTTAG 60.305 52.174 0.00 0.00 36.36 2.34
2275 8280 2.620115 CCGCCGATACTCCTTAGTGTTA 59.380 50.000 0.00 0.00 36.36 2.41
2277 8282 1.030457 CCGCCGATACTCCTTAGTGT 58.970 55.000 0.00 0.00 36.36 3.55
2278 8283 0.314302 CCCGCCGATACTCCTTAGTG 59.686 60.000 0.00 0.00 36.36 2.74
2279 8284 0.826672 CCCCGCCGATACTCCTTAGT 60.827 60.000 0.00 0.00 39.91 2.24
2281 8286 0.825010 GTCCCCGCCGATACTCCTTA 60.825 60.000 0.00 0.00 0.00 2.69
2282 8287 2.132352 GTCCCCGCCGATACTCCTT 61.132 63.158 0.00 0.00 0.00 3.36
2284 8289 2.521224 AGTCCCCGCCGATACTCC 60.521 66.667 0.00 0.00 0.00 3.85
2285 8290 2.728817 CAGTCCCCGCCGATACTC 59.271 66.667 0.00 0.00 0.00 2.59
2286 8291 3.537874 GCAGTCCCCGCCGATACT 61.538 66.667 0.00 0.00 0.00 2.12
2287 8292 3.845259 TGCAGTCCCCGCCGATAC 61.845 66.667 0.00 0.00 0.00 2.24
2288 8293 3.845259 GTGCAGTCCCCGCCGATA 61.845 66.667 0.00 0.00 0.00 2.92
2293 8298 2.672996 ATTGTGTGCAGTCCCCGC 60.673 61.111 0.00 0.00 0.00 6.13
2294 8299 1.302431 TGATTGTGTGCAGTCCCCG 60.302 57.895 0.00 0.00 31.28 5.73
2295 8300 0.250901 AGTGATTGTGTGCAGTCCCC 60.251 55.000 0.00 0.00 31.28 4.81
2324 9677 1.615392 GAGCCAAGCCTGTTGACAATT 59.385 47.619 0.00 0.00 0.00 2.32
2354 9707 9.631639 CAAATTTCCAAAATCTTTGTTTACGTC 57.368 29.630 0.00 0.00 0.00 4.34
2390 9752 2.159324 GGAGTAACAGTACCGGCACTAC 60.159 54.545 7.11 2.31 0.00 2.73
2620 11051 0.545309 AGCCAGAGCCAGGTAAGACA 60.545 55.000 0.00 0.00 41.25 3.41
2623 11054 1.451028 GCAGCCAGAGCCAGGTAAG 60.451 63.158 0.00 0.00 41.25 2.34
2633 11064 1.768684 AAACGAAGGAGGCAGCCAGA 61.769 55.000 15.80 0.00 0.00 3.86
2761 11741 2.270205 CCATCTTGGCTCTGGCGT 59.730 61.111 0.00 0.00 39.81 5.68
2864 11844 0.549469 TGATGGTGCAGATGCCTCAT 59.451 50.000 1.72 6.08 41.18 2.90
2894 11874 2.354259 CAGTGTTTGCAGAGGAGGATC 58.646 52.381 0.00 0.00 0.00 3.36
2895 11875 2.486472 CAGTGTTTGCAGAGGAGGAT 57.514 50.000 0.00 0.00 0.00 3.24
2917 12034 1.064017 ACAGAAAAAGACCTGCCACCA 60.064 47.619 0.00 0.00 33.90 4.17
2931 13757 4.377897 GGTCTTCTTCTCGGAAACAGAAA 58.622 43.478 0.00 0.00 30.66 2.52
3025 13863 2.586258 AGAGGTACTTGCTACATGCG 57.414 50.000 0.00 0.00 42.70 4.73
3031 13869 6.041182 TGACTTTGTTGTAGAGGTACTTGCTA 59.959 38.462 0.00 0.00 41.55 3.49
3107 13954 1.746615 CCGCTTCTGGTGACATGGG 60.747 63.158 0.00 0.00 41.51 4.00
3229 14076 3.560025 CCAGCAACTCCCACACTATTTCT 60.560 47.826 0.00 0.00 0.00 2.52
3235 14082 2.113986 GCCAGCAACTCCCACACT 59.886 61.111 0.00 0.00 0.00 3.55
3272 14119 0.108281 GACGGAGCCAGGTAAAGGAC 60.108 60.000 0.00 0.00 0.00 3.85
3357 14210 2.401766 CCGATGTGGGTGAGCAAGC 61.402 63.158 0.00 0.00 0.00 4.01
3413 14266 3.290948 AACTTAAACACCAGTGGCTGA 57.709 42.857 9.78 0.00 32.44 4.26
3474 14332 3.564225 ACGAAAGGAACTGAAATCCACAC 59.436 43.478 0.00 0.00 40.86 3.82
3514 14376 4.876107 ACAGACCTTAAACACACTCACAAG 59.124 41.667 0.00 0.00 0.00 3.16
3519 14381 4.196971 ACCAACAGACCTTAAACACACTC 58.803 43.478 0.00 0.00 0.00 3.51
3681 14571 4.273148 ACTTCTCGTATCTTTGGCACTT 57.727 40.909 0.00 0.00 0.00 3.16
3695 14585 4.749245 AAATAGCACCACAAACTTCTCG 57.251 40.909 0.00 0.00 0.00 4.04
3722 14612 1.004044 AGGTCACATTCCCAGAAGCTG 59.996 52.381 0.00 0.00 0.00 4.24
3723 14613 1.280421 GAGGTCACATTCCCAGAAGCT 59.720 52.381 0.00 0.00 0.00 3.74
3724 14614 1.280421 AGAGGTCACATTCCCAGAAGC 59.720 52.381 0.00 0.00 0.00 3.86
3741 14631 5.407691 GGAACGGTTTAGTAAAGGTTCAGAG 59.592 44.000 25.66 6.81 37.03 3.35
3801 14798 1.674221 GCGATGCAAGGAGTTGTCTCT 60.674 52.381 0.00 0.00 40.29 3.10
3802 14799 0.723981 GCGATGCAAGGAGTTGTCTC 59.276 55.000 0.00 0.00 39.76 3.36
3842 14849 2.755469 GCGCCATGGACCCATTGT 60.755 61.111 18.40 0.00 33.90 2.71
3884 15163 3.649986 GAAGGCTTGCGTGCGTGT 61.650 61.111 3.46 0.00 0.00 4.49
3915 15194 0.871592 ATCATGTCGATGACCGCGTG 60.872 55.000 4.92 0.00 41.52 5.34
3941 15220 4.435436 AAGACGATGCAGGCGCGA 62.435 61.111 12.10 0.00 42.97 5.87
3996 15275 2.320587 GGTGAACAGTGCTGGCGAG 61.321 63.158 4.11 0.00 34.19 5.03
4001 15280 1.995484 CGTATGAGGTGAACAGTGCTG 59.005 52.381 0.00 0.00 0.00 4.41
4010 15289 2.447443 ACTTCAGAGCGTATGAGGTGA 58.553 47.619 3.48 0.00 35.85 4.02
4024 15304 2.526304 TCCTGACGGACAAACTTCAG 57.474 50.000 0.00 0.00 33.30 3.02
4099 15383 4.573607 GTGGACTTGAAACCGTACTTTTCT 59.426 41.667 14.47 0.00 34.58 2.52
4115 15399 0.036952 CATCACGGCTGAGTGGACTT 60.037 55.000 0.00 0.00 42.10 3.01
4116 15400 1.593787 CATCACGGCTGAGTGGACT 59.406 57.895 0.00 0.00 42.10 3.85
4231 15710 1.934220 TAGGACAGCTCGTTCGCCTG 61.934 60.000 0.00 9.69 0.00 4.85
4232 15711 1.658686 CTAGGACAGCTCGTTCGCCT 61.659 60.000 0.00 0.00 0.00 5.52
4237 15716 1.550976 CTTTCCCTAGGACAGCTCGTT 59.449 52.381 11.48 0.00 0.00 3.85
4249 15728 1.138266 GTCGGTGCTATGCTTTCCCTA 59.862 52.381 0.00 0.00 0.00 3.53
4283 15762 8.066612 TCCTTTGAAAAGAGACTTTGATGTTT 57.933 30.769 4.34 0.00 38.28 2.83
4286 15765 9.538508 AAAATCCTTTGAAAAGAGACTTTGATG 57.461 29.630 4.34 0.00 38.28 3.07
4287 15766 9.755804 GAAAATCCTTTGAAAAGAGACTTTGAT 57.244 29.630 4.34 0.00 38.28 2.57
4288 15767 7.915397 CGAAAATCCTTTGAAAAGAGACTTTGA 59.085 33.333 4.34 0.00 38.28 2.69
4290 15769 7.068226 TCCGAAAATCCTTTGAAAAGAGACTTT 59.932 33.333 4.34 3.24 38.28 2.66
4319 15798 2.467880 AGACTCCGGCTCTCCAAAATA 58.532 47.619 0.00 0.00 0.00 1.40
4427 15906 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
4428 15907 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
4429 15908 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
4430 15909 2.097142 AGACGAGTAATTCCGAACGGAG 59.903 50.000 15.34 5.60 46.06 4.63
4431 15910 2.086869 AGACGAGTAATTCCGAACGGA 58.913 47.619 12.04 12.04 43.52 4.69
4432 15911 2.556534 AGACGAGTAATTCCGAACGG 57.443 50.000 6.94 6.94 0.00 4.44
4433 15912 4.901814 TCTTAGACGAGTAATTCCGAACG 58.098 43.478 0.00 0.00 0.00 3.95
4434 15913 7.487189 TCATTTCTTAGACGAGTAATTCCGAAC 59.513 37.037 0.00 0.00 0.00 3.95
4435 15914 7.541162 TCATTTCTTAGACGAGTAATTCCGAA 58.459 34.615 0.00 0.00 0.00 4.30
4436 15915 7.092137 TCATTTCTTAGACGAGTAATTCCGA 57.908 36.000 0.00 0.00 0.00 4.55
4437 15916 7.751047 TTCATTTCTTAGACGAGTAATTCCG 57.249 36.000 0.00 0.00 0.00 4.30
4438 15917 9.099454 ACATTCATTTCTTAGACGAGTAATTCC 57.901 33.333 0.00 0.00 0.00 3.01
4504 15983 9.834628 GTTCGGAATTACTTGTCATAAAAATGA 57.165 29.630 0.00 0.00 0.00 2.57
4505 15984 8.785101 CGTTCGGAATTACTTGTCATAAAAATG 58.215 33.333 0.00 0.00 0.00 2.32
4506 15985 7.966204 CCGTTCGGAATTACTTGTCATAAAAAT 59.034 33.333 5.19 0.00 0.00 1.82
4507 15986 7.172875 TCCGTTCGGAATTACTTGTCATAAAAA 59.827 33.333 11.66 0.00 0.00 1.94
4508 15987 6.649973 TCCGTTCGGAATTACTTGTCATAAAA 59.350 34.615 11.66 0.00 0.00 1.52
4509 15988 6.164876 TCCGTTCGGAATTACTTGTCATAAA 58.835 36.000 11.66 0.00 0.00 1.40
4510 15989 5.722263 TCCGTTCGGAATTACTTGTCATAA 58.278 37.500 11.66 0.00 0.00 1.90
4511 15990 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
4512 15991 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
4513 15992 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
4514 15993 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4515 15994 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4516 15995 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4517 15996 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4518 15997 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4519 15998 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4520 15999 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4521 16000 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4522 16001 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
4523 16002 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
4524 16003 2.553904 GGATATACTCCCTCCGTTCGGA 60.554 54.545 13.34 13.34 38.19 4.55
4525 16004 1.817447 GGATATACTCCCTCCGTTCGG 59.183 57.143 4.74 4.74 38.19 4.30
4526 16005 2.228343 GTGGATATACTCCCTCCGTTCG 59.772 54.545 0.00 0.00 44.23 3.95
4527 16006 3.005578 GTGTGGATATACTCCCTCCGTTC 59.994 52.174 0.00 0.00 44.23 3.95
4528 16007 2.963782 GTGTGGATATACTCCCTCCGTT 59.036 50.000 0.00 0.00 44.23 4.44
4529 16008 2.595238 GTGTGGATATACTCCCTCCGT 58.405 52.381 0.00 0.00 44.23 4.69
4530 16009 1.893801 GGTGTGGATATACTCCCTCCG 59.106 57.143 0.00 0.00 44.23 4.63
4531 16010 2.633481 GTGGTGTGGATATACTCCCTCC 59.367 54.545 0.00 0.00 44.23 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.