Multiple sequence alignment - TraesCS6B01G378300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G378300 chr6B 100.000 4451 0 0 1 4451 653111432 653106982 0.000000e+00 8220
1 TraesCS6B01G378300 chr6B 97.300 1222 31 2 767 1988 653338742 653337523 0.000000e+00 2073
2 TraesCS6B01G378300 chr6B 86.131 1406 154 22 2387 3766 653851718 653850328 0.000000e+00 1478
3 TraesCS6B01G378300 chr6B 83.524 1402 168 30 2387 3760 653184196 653182830 0.000000e+00 1251
4 TraesCS6B01G378300 chr6B 83.207 1316 155 26 2386 3650 653772683 653771383 0.000000e+00 1146
5 TraesCS6B01G378300 chr6B 81.010 1564 177 56 2385 3893 653711375 653709877 0.000000e+00 1133
6 TraesCS6B01G378300 chr6B 96.849 603 18 1 166 767 653387113 653386511 0.000000e+00 1007
7 TraesCS6B01G378300 chr6B 81.628 1192 184 23 1041 2210 653230431 653229253 0.000000e+00 955
8 TraesCS6B01G378300 chr6B 80.182 1100 170 28 1128 2221 653712579 653711522 0.000000e+00 780
9 TraesCS6B01G378300 chr6B 78.971 1127 180 33 1125 2221 653852917 653851818 0.000000e+00 715
10 TraesCS6B01G378300 chr6B 80.059 1023 133 40 1128 2139 653784239 653783277 0.000000e+00 693
11 TraesCS6B01G378300 chr6B 85.918 632 74 5 2933 3558 653220191 653220813 0.000000e+00 660
12 TraesCS6B01G378300 chr6B 77.886 1126 191 35 1125 2221 653185392 653184296 0.000000e+00 647
13 TraesCS6B01G378300 chr6B 79.748 795 108 25 1373 2163 653763339 653762594 1.100000e-145 527
14 TraesCS6B01G378300 chr6B 82.396 551 82 13 2387 2933 653217916 653218455 2.420000e-127 466
15 TraesCS6B01G378300 chr6B 81.273 550 73 14 2405 2933 653310131 653309591 6.890000e-113 418
16 TraesCS6B01G378300 chr6B 87.205 297 38 0 1925 2221 653216192 653216488 5.510000e-89 339
17 TraesCS6B01G378300 chr6B 81.991 422 54 13 1776 2196 653417311 653416911 5.510000e-89 339
18 TraesCS6B01G378300 chr6B 88.085 235 27 1 2387 2620 655071840 655072074 1.220000e-70 278
19 TraesCS6B01G378300 chr6B 97.368 76 2 0 79 154 653387310 653387235 3.610000e-26 130
20 TraesCS6B01G378300 chr6B 85.039 127 15 4 2810 2933 655077824 655077949 4.670000e-25 126
21 TraesCS6B01G378300 chr6D 86.231 2157 182 30 2382 4451 432909315 432907187 0.000000e+00 2231
22 TraesCS6B01G378300 chr6D 91.766 1348 77 17 770 2116 432967417 432966103 0.000000e+00 1844
23 TraesCS6B01G378300 chr6D 83.849 1746 203 42 2109 3792 432965928 432964200 0.000000e+00 1589
24 TraesCS6B01G378300 chr6D 80.054 1113 185 21 1129 2221 433581758 433582853 0.000000e+00 791
25 TraesCS6B01G378300 chr6D 79.853 1087 161 30 1140 2221 432910458 432909425 0.000000e+00 741
26 TraesCS6B01G378300 chr6D 88.914 451 39 6 3190 3630 433213482 433213033 3.030000e-151 545
27 TraesCS6B01G378300 chr6D 91.914 371 22 7 400 768 432967905 432967541 3.070000e-141 512
28 TraesCS6B01G378300 chr6D 79.018 672 86 30 1109 1729 433256315 433255648 4.140000e-110 409
29 TraesCS6B01G378300 chr6D 92.903 155 8 2 248 401 433032613 433032461 5.790000e-54 222
30 TraesCS6B01G378300 chr6D 80.312 320 36 14 3643 3946 433207931 433207623 2.700000e-52 217
31 TraesCS6B01G378300 chr6A 82.527 1860 191 68 2666 4451 579024316 579022517 0.000000e+00 1511
32 TraesCS6B01G378300 chr6A 79.206 1058 165 30 1194 2221 579112758 579111726 0.000000e+00 684
33 TraesCS6B01G378300 chr6A 85.531 622 80 7 2927 3543 579111041 579110425 3.750000e-180 641
34 TraesCS6B01G378300 chr6A 83.750 560 80 8 2380 2931 579111626 579111070 1.830000e-143 520
35 TraesCS6B01G378300 chr6A 83.878 490 63 6 1743 2220 579025156 579024671 1.890000e-123 453
36 TraesCS6B01G378300 chr6A 80.556 576 93 16 1127 1693 579034426 579033861 4.120000e-115 425
37 TraesCS6B01G378300 chr6A 87.747 253 30 1 2387 2638 579024565 579024313 1.210000e-75 294
38 TraesCS6B01G378300 chr7D 76.906 459 64 21 4015 4450 235166297 235165858 5.790000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G378300 chr6B 653106982 653111432 4450 True 8220.000000 8220 100.000000 1 4451 1 chr6B.!!$R1 4450
1 TraesCS6B01G378300 chr6B 653337523 653338742 1219 True 2073.000000 2073 97.300000 767 1988 1 chr6B.!!$R4 1221
2 TraesCS6B01G378300 chr6B 653771383 653772683 1300 True 1146.000000 1146 83.207000 2386 3650 1 chr6B.!!$R7 1264
3 TraesCS6B01G378300 chr6B 653850328 653852917 2589 True 1096.500000 1478 82.551000 1125 3766 2 chr6B.!!$R12 2641
4 TraesCS6B01G378300 chr6B 653709877 653712579 2702 True 956.500000 1133 80.596000 1128 3893 2 chr6B.!!$R11 2765
5 TraesCS6B01G378300 chr6B 653229253 653230431 1178 True 955.000000 955 81.628000 1041 2210 1 chr6B.!!$R2 1169
6 TraesCS6B01G378300 chr6B 653182830 653185392 2562 True 949.000000 1251 80.705000 1125 3760 2 chr6B.!!$R9 2635
7 TraesCS6B01G378300 chr6B 653783277 653784239 962 True 693.000000 693 80.059000 1128 2139 1 chr6B.!!$R8 1011
8 TraesCS6B01G378300 chr6B 653386511 653387310 799 True 568.500000 1007 97.108500 79 767 2 chr6B.!!$R10 688
9 TraesCS6B01G378300 chr6B 653762594 653763339 745 True 527.000000 527 79.748000 1373 2163 1 chr6B.!!$R6 790
10 TraesCS6B01G378300 chr6B 653216192 653220813 4621 False 488.333333 660 85.173000 1925 3558 3 chr6B.!!$F3 1633
11 TraesCS6B01G378300 chr6B 653309591 653310131 540 True 418.000000 418 81.273000 2405 2933 1 chr6B.!!$R3 528
12 TraesCS6B01G378300 chr6D 432907187 432910458 3271 True 1486.000000 2231 83.042000 1140 4451 2 chr6D.!!$R5 3311
13 TraesCS6B01G378300 chr6D 432964200 432967905 3705 True 1315.000000 1844 89.176333 400 3792 3 chr6D.!!$R6 3392
14 TraesCS6B01G378300 chr6D 433581758 433582853 1095 False 791.000000 791 80.054000 1129 2221 1 chr6D.!!$F1 1092
15 TraesCS6B01G378300 chr6D 433255648 433256315 667 True 409.000000 409 79.018000 1109 1729 1 chr6D.!!$R4 620
16 TraesCS6B01G378300 chr6A 579022517 579025156 2639 True 752.666667 1511 84.717333 1743 4451 3 chr6A.!!$R2 2708
17 TraesCS6B01G378300 chr6A 579110425 579112758 2333 True 615.000000 684 82.829000 1194 3543 3 chr6A.!!$R3 2349
18 TraesCS6B01G378300 chr6A 579033861 579034426 565 True 425.000000 425 80.556000 1127 1693 1 chr6A.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.100503 GGCATTCCAACATACGTGGC 59.899 55.0 0.00 0.0 0.00 5.01 F
163 164 0.390603 TCCAACATACGTGGCTTCCG 60.391 55.0 0.00 0.0 0.00 4.30 F
231 342 0.959553 GGTCTATCATCTTCCGCCGA 59.040 55.0 0.00 0.0 0.00 5.54 F
1920 2224 0.676466 TGCTTCTGGTGCCAATACCG 60.676 55.0 0.00 0.0 43.87 4.02 F
2950 6492 0.250295 TGGTCGGCCTTCTTCTGTTG 60.250 55.0 7.97 0.0 35.27 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1792 1.491332 CCCACGGGAATAACATGGGTA 59.509 52.381 0.00 0.00 44.37 3.69 R
1633 1922 2.139323 AAGGATTTCCGGGCCTTTAC 57.861 50.000 0.84 0.00 38.85 2.01 R
2223 2715 3.148412 AGCAGCATTGTTGTACATCACA 58.852 40.909 6.12 1.07 34.51 3.58 R
2954 6496 0.249657 GGCGGCGATCTTCTTCTCAT 60.250 55.000 12.98 0.00 0.00 2.90 R
4129 7785 0.460109 TGTGAGGATTGACGATGGCG 60.460 55.000 0.00 0.00 44.79 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.473520 ACAAGGCCGGATCGCAGG 62.474 66.667 5.05 0.00 0.00 4.85
18 19 4.473520 CAAGGCCGGATCGCAGGT 62.474 66.667 5.05 0.00 0.00 4.00
19 20 2.762459 AAGGCCGGATCGCAGGTA 60.762 61.111 5.05 0.00 0.00 3.08
20 21 2.797278 AAGGCCGGATCGCAGGTAG 61.797 63.158 5.05 0.00 0.00 3.18
21 22 3.224324 GGCCGGATCGCAGGTAGA 61.224 66.667 5.05 0.00 0.00 2.59
22 23 2.027751 GCCGGATCGCAGGTAGAC 59.972 66.667 5.05 0.00 0.00 2.59
23 24 2.782222 GCCGGATCGCAGGTAGACA 61.782 63.158 5.05 0.00 0.00 3.41
24 25 1.813859 CCGGATCGCAGGTAGACAA 59.186 57.895 0.00 0.00 0.00 3.18
25 26 0.389391 CCGGATCGCAGGTAGACAAT 59.611 55.000 0.00 0.00 0.00 2.71
26 27 1.202533 CCGGATCGCAGGTAGACAATT 60.203 52.381 0.00 0.00 0.00 2.32
27 28 2.035449 CCGGATCGCAGGTAGACAATTA 59.965 50.000 0.00 0.00 0.00 1.40
28 29 3.050619 CGGATCGCAGGTAGACAATTAC 58.949 50.000 0.00 0.00 0.00 1.89
29 30 3.243434 CGGATCGCAGGTAGACAATTACT 60.243 47.826 0.00 0.00 0.00 2.24
30 31 4.299978 GGATCGCAGGTAGACAATTACTC 58.700 47.826 0.00 0.00 0.00 2.59
31 32 3.795623 TCGCAGGTAGACAATTACTCC 57.204 47.619 0.00 0.00 0.00 3.85
32 33 2.429610 TCGCAGGTAGACAATTACTCCC 59.570 50.000 0.00 0.00 0.00 4.30
33 34 2.431057 CGCAGGTAGACAATTACTCCCT 59.569 50.000 0.00 0.00 0.00 4.20
34 35 3.491104 CGCAGGTAGACAATTACTCCCTC 60.491 52.174 0.00 0.00 0.00 4.30
35 36 3.181464 GCAGGTAGACAATTACTCCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
36 37 3.068307 CAGGTAGACAATTACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
37 38 3.029570 GGTAGACAATTACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
38 39 3.450096 GGTAGACAATTACTCCCTCCGTT 59.550 47.826 0.00 0.00 0.00 4.44
39 40 3.889520 AGACAATTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
40 41 2.500504 AGACAATTACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
41 42 2.235402 GACAATTACTCCCTCCGTTCCA 59.765 50.000 0.00 0.00 0.00 3.53
42 43 2.844348 ACAATTACTCCCTCCGTTCCAT 59.156 45.455 0.00 0.00 0.00 3.41
43 44 3.265995 ACAATTACTCCCTCCGTTCCATT 59.734 43.478 0.00 0.00 0.00 3.16
44 45 4.263771 ACAATTACTCCCTCCGTTCCATTT 60.264 41.667 0.00 0.00 0.00 2.32
45 46 4.586306 ATTACTCCCTCCGTTCCATTTT 57.414 40.909 0.00 0.00 0.00 1.82
46 47 5.703730 ATTACTCCCTCCGTTCCATTTTA 57.296 39.130 0.00 0.00 0.00 1.52
47 48 3.345508 ACTCCCTCCGTTCCATTTTAC 57.654 47.619 0.00 0.00 0.00 2.01
48 49 2.910977 ACTCCCTCCGTTCCATTTTACT 59.089 45.455 0.00 0.00 0.00 2.24
49 50 3.329814 ACTCCCTCCGTTCCATTTTACTT 59.670 43.478 0.00 0.00 0.00 2.24
50 51 3.681593 TCCCTCCGTTCCATTTTACTTG 58.318 45.455 0.00 0.00 0.00 3.16
51 52 3.073356 TCCCTCCGTTCCATTTTACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
52 53 3.439129 CCCTCCGTTCCATTTTACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
53 54 3.124636 CCTCCGTTCCATTTTACTTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
54 55 2.481185 TCCGTTCCATTTTACTTGTCGC 59.519 45.455 0.00 0.00 0.00 5.19
55 56 2.482721 CCGTTCCATTTTACTTGTCGCT 59.517 45.455 0.00 0.00 0.00 4.93
56 57 3.479006 CGTTCCATTTTACTTGTCGCTG 58.521 45.455 0.00 0.00 0.00 5.18
57 58 3.185594 CGTTCCATTTTACTTGTCGCTGA 59.814 43.478 0.00 0.00 0.00 4.26
58 59 4.142902 CGTTCCATTTTACTTGTCGCTGAT 60.143 41.667 0.00 0.00 0.00 2.90
59 60 5.616866 CGTTCCATTTTACTTGTCGCTGATT 60.617 40.000 0.00 0.00 0.00 2.57
60 61 5.957842 TCCATTTTACTTGTCGCTGATTT 57.042 34.783 0.00 0.00 0.00 2.17
61 62 7.302524 GTTCCATTTTACTTGTCGCTGATTTA 58.697 34.615 0.00 0.00 0.00 1.40
62 63 7.441890 TCCATTTTACTTGTCGCTGATTTAA 57.558 32.000 0.00 0.00 0.00 1.52
63 64 8.050778 TCCATTTTACTTGTCGCTGATTTAAT 57.949 30.769 0.00 0.00 0.00 1.40
64 65 9.168451 TCCATTTTACTTGTCGCTGATTTAATA 57.832 29.630 0.00 0.00 0.00 0.98
65 66 9.221775 CCATTTTACTTGTCGCTGATTTAATAC 57.778 33.333 0.00 0.00 0.00 1.89
66 67 9.767684 CATTTTACTTGTCGCTGATTTAATACA 57.232 29.630 0.00 0.00 0.00 2.29
69 70 9.601971 TTTACTTGTCGCTGATTTAATACAAAC 57.398 29.630 0.00 0.00 0.00 2.93
70 71 6.304126 ACTTGTCGCTGATTTAATACAAACG 58.696 36.000 0.00 0.00 0.00 3.60
71 72 5.211266 TGTCGCTGATTTAATACAAACGG 57.789 39.130 0.00 0.00 0.00 4.44
72 73 4.930405 TGTCGCTGATTTAATACAAACGGA 59.070 37.500 0.00 0.00 0.00 4.69
73 74 5.062934 TGTCGCTGATTTAATACAAACGGAG 59.937 40.000 0.00 0.00 0.00 4.63
74 75 4.569162 TCGCTGATTTAATACAAACGGAGG 59.431 41.667 0.00 0.00 0.00 4.30
75 76 4.260620 CGCTGATTTAATACAAACGGAGGG 60.261 45.833 0.00 0.00 0.00 4.30
76 77 4.036380 GCTGATTTAATACAAACGGAGGGG 59.964 45.833 0.00 0.00 0.00 4.79
77 78 4.528920 TGATTTAATACAAACGGAGGGGG 58.471 43.478 0.00 0.00 0.00 5.40
124 125 0.941463 CTCACGTGCTCTGTGGTCAC 60.941 60.000 11.67 0.00 37.91 3.67
126 127 0.530650 CACGTGCTCTGTGGTCACTT 60.531 55.000 0.82 0.00 33.69 3.16
157 158 1.458398 TGGCATTCCAACATACGTGG 58.542 50.000 0.00 0.00 39.99 4.94
158 159 0.100503 GGCATTCCAACATACGTGGC 59.899 55.000 0.00 0.00 0.00 5.01
159 160 1.094785 GCATTCCAACATACGTGGCT 58.905 50.000 0.00 0.00 0.00 4.75
161 162 2.477863 GCATTCCAACATACGTGGCTTC 60.478 50.000 0.00 0.00 0.00 3.86
162 163 1.816074 TTCCAACATACGTGGCTTCC 58.184 50.000 0.00 0.00 0.00 3.46
163 164 0.390603 TCCAACATACGTGGCTTCCG 60.391 55.000 0.00 0.00 0.00 4.30
164 165 0.390603 CCAACATACGTGGCTTCCGA 60.391 55.000 0.00 0.00 0.00 4.55
194 305 2.355756 CCAAATATGTTGCCGGTGAGAG 59.644 50.000 1.90 0.00 0.00 3.20
228 339 2.354203 GGGATGGTCTATCATCTTCCGC 60.354 54.545 3.37 0.00 42.22 5.54
231 342 0.959553 GGTCTATCATCTTCCGCCGA 59.040 55.000 0.00 0.00 0.00 5.54
241 352 1.078708 TTCCGCCGACATTTCTCCC 60.079 57.895 0.00 0.00 0.00 4.30
294 405 4.347453 GTGCAAAGCAGTGGCCCG 62.347 66.667 0.00 0.00 40.08 6.13
362 473 1.474855 CCATGCATGGTCGATGTGGTA 60.475 52.381 33.68 0.00 43.05 3.25
371 482 2.287915 GGTCGATGTGGTAATCATGCAC 59.712 50.000 0.00 0.00 0.00 4.57
738 849 1.514087 GTGTGATCGCCCCTACGAA 59.486 57.895 3.31 0.00 46.59 3.85
799 1033 1.374252 AGTAGAAAGCCGCACACCG 60.374 57.895 0.00 0.00 0.00 4.94
918 1152 6.471146 ACAGTAGTTGCTTTCAAGATCAGAT 58.529 36.000 0.00 0.00 31.93 2.90
1527 1792 8.472007 TTTGGATTGTTTACCTAGTTGTCAAT 57.528 30.769 0.00 0.00 0.00 2.57
1554 1819 1.138464 GTTATTCCCGTGGGAGAGACC 59.862 57.143 7.85 0.00 46.06 3.85
1633 1922 6.825284 TGGCATTAAAATGTTATGCATTCG 57.175 33.333 3.54 0.00 46.29 3.34
1920 2224 0.676466 TGCTTCTGGTGCCAATACCG 60.676 55.000 0.00 0.00 43.87 4.02
2133 2622 1.902508 GATTCACCACTCCCAGTCTCA 59.097 52.381 0.00 0.00 0.00 3.27
2149 2638 2.143594 CTCATACTCGGGTAGCCGGC 62.144 65.000 31.34 21.89 0.00 6.13
2272 2764 2.225727 CGGAAACCTTTAGTGGTGAAGC 59.774 50.000 0.00 0.00 40.73 3.86
2373 4130 2.291282 TGGAACGTTGAATAGCCCCAAT 60.291 45.455 5.00 0.00 0.00 3.16
2508 4274 3.009143 GGACCAAAGTAATCCTCACCTGT 59.991 47.826 0.00 0.00 0.00 4.00
2525 4292 1.954146 GTCGATGTGTGCACCGTGT 60.954 57.895 15.69 0.00 0.00 4.49
2545 4315 3.010696 TGTCTCCTTGAAGCTCTCTCCTA 59.989 47.826 0.00 0.00 0.00 2.94
2616 4386 2.610232 GCAAAGGCATTGGAACGACAAT 60.610 45.455 4.48 0.00 41.51 2.71
2627 4397 5.856126 TGGAACGACAATATGAGACAAAC 57.144 39.130 0.00 0.00 0.00 2.93
2685 4455 1.280421 CTTCTCTTACCTGGCTGCCTT 59.720 52.381 21.03 6.74 0.00 4.35
2699 4472 0.538057 TGCCTTCTTCACTTGCTGGG 60.538 55.000 0.00 0.00 0.00 4.45
2711 4490 2.124942 GCTGGGCCGAAAGAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
2712 4491 2.586792 CTGGGCCGAAAGAGGAGG 59.413 66.667 0.00 0.00 0.00 4.30
2713 4492 1.990060 CTGGGCCGAAAGAGGAGGA 60.990 63.158 0.00 0.00 0.00 3.71
2720 4499 3.142174 GCCGAAAGAGGAGGAATAATGG 58.858 50.000 0.00 0.00 0.00 3.16
2723 4502 4.392940 CGAAAGAGGAGGAATAATGGCAT 58.607 43.478 0.00 0.00 0.00 4.40
2950 6492 0.250295 TGGTCGGCCTTCTTCTGTTG 60.250 55.000 7.97 0.00 35.27 3.33
2951 6493 0.250338 GGTCGGCCTTCTTCTGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
2952 6494 1.149148 GTCGGCCTTCTTCTGTTGTC 58.851 55.000 0.00 0.00 0.00 3.18
2953 6495 1.048601 TCGGCCTTCTTCTGTTGTCT 58.951 50.000 0.00 0.00 0.00 3.41
2954 6496 2.029290 GTCGGCCTTCTTCTGTTGTCTA 60.029 50.000 0.00 0.00 0.00 2.59
2966 6517 8.359875 TCTTCTGTTGTCTATGAGAAGAAGAT 57.640 34.615 11.63 0.00 44.66 2.40
3031 6582 0.755698 CTGCCCCGAGCTACTTCCTA 60.756 60.000 0.00 0.00 44.23 2.94
3037 6588 4.087182 CCCCGAGCTACTTCCTAATGATA 58.913 47.826 0.00 0.00 0.00 2.15
3069 6620 3.565902 GCAAGCACCTCTACAAGAAAGTT 59.434 43.478 0.00 0.00 0.00 2.66
3075 6626 7.280356 AGCACCTCTACAAGAAAGTTAAGAAA 58.720 34.615 0.00 0.00 0.00 2.52
3130 6684 0.107508 CGGCATTGAGGTGTCATCCT 60.108 55.000 0.00 0.00 40.97 3.24
3188 6742 1.732259 GTTGGGTGCTACACAGAATCG 59.268 52.381 0.00 0.00 30.42 3.34
3256 6810 2.835431 CCGGAGGCGAGGAGATGT 60.835 66.667 0.00 0.00 46.14 3.06
3413 6973 2.498941 GGATCATCGACAGGCCCGA 61.499 63.158 0.00 0.92 40.53 5.14
3624 7214 5.934625 TCATTTCTGTTAGGCAAGAAGAGAC 59.065 40.000 0.00 0.00 0.00 3.36
3633 7223 2.029828 GGCAAGAAGAGACGTGAAGAGA 60.030 50.000 0.00 0.00 0.00 3.10
3660 7251 6.206438 CGAGAGAGATGAGACTTGGAATGATA 59.794 42.308 0.00 0.00 0.00 2.15
3665 7256 9.023962 AGAGATGAGACTTGGAATGATAGTATC 57.976 37.037 2.97 2.97 32.31 2.24
3789 7395 5.407387 TGATTGTTCTAAACTGTTCCGTAGC 59.593 40.000 0.00 0.00 0.00 3.58
3957 7588 2.362077 GGCACACTCAAAGGTGACAAAT 59.638 45.455 1.52 0.00 42.68 2.32
3976 7607 6.970484 ACAAATTGTCAACAGATTCAGTACC 58.030 36.000 0.00 0.00 0.00 3.34
3977 7608 6.772716 ACAAATTGTCAACAGATTCAGTACCT 59.227 34.615 0.00 0.00 0.00 3.08
3979 7610 5.545063 TTGTCAACAGATTCAGTACCTGA 57.455 39.130 3.46 0.00 38.87 3.86
3980 7611 5.745312 TGTCAACAGATTCAGTACCTGAT 57.255 39.130 3.46 0.00 40.39 2.90
3982 7613 4.872691 GTCAACAGATTCAGTACCTGATGG 59.127 45.833 3.46 0.00 40.39 3.51
4002 7657 2.642254 CCAGGCTGCAACCACCATG 61.642 63.158 9.56 0.00 0.00 3.66
4003 7658 1.904865 CAGGCTGCAACCACCATGT 60.905 57.895 9.23 0.00 0.00 3.21
4007 7662 1.676006 GGCTGCAACCACCATGTATAC 59.324 52.381 0.00 0.00 0.00 1.47
4008 7663 2.364632 GCTGCAACCACCATGTATACA 58.635 47.619 8.27 8.27 0.00 2.29
4009 7664 2.355756 GCTGCAACCACCATGTATACAG 59.644 50.000 11.91 1.09 0.00 2.74
4010 7665 3.609853 CTGCAACCACCATGTATACAGT 58.390 45.455 11.91 1.76 0.00 3.55
4011 7666 3.605634 TGCAACCACCATGTATACAGTC 58.394 45.455 11.91 0.00 0.00 3.51
4021 7677 7.436933 CACCATGTATACAGTCATACACATCT 58.563 38.462 11.91 0.00 42.58 2.90
4038 7694 4.024556 CACATCTTCTGTCACCAACAAGAC 60.025 45.833 0.00 0.00 37.45 3.01
4041 7697 2.910688 TCTGTCACCAACAAGACCTC 57.089 50.000 0.00 0.00 37.45 3.85
4065 7721 1.338973 CAACAGCCAACTCATGCACTT 59.661 47.619 0.00 0.00 0.00 3.16
4066 7722 1.242076 ACAGCCAACTCATGCACTTC 58.758 50.000 0.00 0.00 0.00 3.01
4091 7747 5.238650 AGGAAATCTAACAACCACACTTTCG 59.761 40.000 0.00 0.00 0.00 3.46
4096 7752 0.107410 ACAACCACACTTTCGGAGCA 60.107 50.000 0.00 0.00 0.00 4.26
4098 7754 0.818040 AACCACACTTTCGGAGCACC 60.818 55.000 0.00 0.00 0.00 5.01
4111 7767 2.103538 GCACCGCAATGCAGATGG 59.896 61.111 5.91 0.05 45.39 3.51
4113 7769 1.936436 GCACCGCAATGCAGATGGAA 61.936 55.000 5.91 0.00 45.39 3.53
4114 7770 0.179156 CACCGCAATGCAGATGGAAC 60.179 55.000 5.91 0.00 0.00 3.62
4116 7772 1.063006 CGCAATGCAGATGGAACGG 59.937 57.895 5.91 0.00 0.00 4.44
4117 7773 1.368345 CGCAATGCAGATGGAACGGA 61.368 55.000 5.91 0.00 0.00 4.69
4118 7774 0.810648 GCAATGCAGATGGAACGGAA 59.189 50.000 0.00 0.00 0.00 4.30
4119 7775 1.468054 GCAATGCAGATGGAACGGAAC 60.468 52.381 0.00 0.00 0.00 3.62
4144 7800 2.586079 CGCGCCATCGTCAATCCT 60.586 61.111 0.00 0.00 38.14 3.24
4150 7806 1.293924 CCATCGTCAATCCTCACAGC 58.706 55.000 0.00 0.00 0.00 4.40
4181 7837 1.828832 GACGACGCAGATCCTACAAG 58.171 55.000 0.00 0.00 0.00 3.16
4238 7900 1.824852 CCCTAACAATTGGGTTCTGCC 59.175 52.381 10.83 0.00 38.65 4.85
4239 7901 2.557452 CCCTAACAATTGGGTTCTGCCT 60.557 50.000 10.83 0.00 38.65 4.75
4241 7903 3.694566 CCTAACAATTGGGTTCTGCCTAC 59.305 47.826 10.83 0.00 37.43 3.18
4311 7973 4.038402 CCTCAGCAACTTGGTTCAGAAAAT 59.962 41.667 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.978452 CTACCTGCGATCCGGCCTTG 62.978 65.000 0.00 0.00 0.00 3.61
2 3 2.762459 TACCTGCGATCCGGCCTT 60.762 61.111 0.00 0.00 0.00 4.35
5 6 2.027751 GTCTACCTGCGATCCGGC 59.972 66.667 0.00 0.00 0.00 6.13
6 7 0.389391 ATTGTCTACCTGCGATCCGG 59.611 55.000 0.00 0.00 0.00 5.14
7 8 2.225068 AATTGTCTACCTGCGATCCG 57.775 50.000 0.00 0.00 0.00 4.18
8 9 4.299978 GAGTAATTGTCTACCTGCGATCC 58.700 47.826 0.00 0.00 0.00 3.36
10 11 3.069729 GGGAGTAATTGTCTACCTGCGAT 59.930 47.826 6.51 0.00 33.37 4.58
11 12 2.429610 GGGAGTAATTGTCTACCTGCGA 59.570 50.000 6.51 0.00 33.37 5.10
12 13 2.431057 AGGGAGTAATTGTCTACCTGCG 59.569 50.000 13.33 0.00 43.89 5.18
13 14 3.181464 GGAGGGAGTAATTGTCTACCTGC 60.181 52.174 17.42 16.40 45.38 4.85
14 15 3.068307 CGGAGGGAGTAATTGTCTACCTG 59.932 52.174 17.42 4.55 45.38 4.00
16 17 3.029570 ACGGAGGGAGTAATTGTCTACC 58.970 50.000 5.82 5.82 36.22 3.18
17 18 4.441217 GGAACGGAGGGAGTAATTGTCTAC 60.441 50.000 0.00 0.00 0.00 2.59
18 19 3.703052 GGAACGGAGGGAGTAATTGTCTA 59.297 47.826 0.00 0.00 0.00 2.59
19 20 2.500504 GGAACGGAGGGAGTAATTGTCT 59.499 50.000 0.00 0.00 0.00 3.41
20 21 2.235402 TGGAACGGAGGGAGTAATTGTC 59.765 50.000 0.00 0.00 0.00 3.18
21 22 2.262637 TGGAACGGAGGGAGTAATTGT 58.737 47.619 0.00 0.00 0.00 2.71
22 23 3.560636 ATGGAACGGAGGGAGTAATTG 57.439 47.619 0.00 0.00 0.00 2.32
23 24 4.586306 AAATGGAACGGAGGGAGTAATT 57.414 40.909 0.00 0.00 0.00 1.40
24 25 4.586306 AAAATGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
25 26 4.533311 AGTAAAATGGAACGGAGGGAGTAA 59.467 41.667 0.00 0.00 0.00 2.24
26 27 4.098894 AGTAAAATGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
27 28 2.910977 AGTAAAATGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
28 29 3.629142 AGTAAAATGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
29 30 3.073356 ACAAGTAAAATGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
30 31 3.418047 ACAAGTAAAATGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
31 32 3.124636 CGACAAGTAAAATGGAACGGAGG 59.875 47.826 0.00 0.00 0.00 4.30
32 33 3.424433 GCGACAAGTAAAATGGAACGGAG 60.424 47.826 0.00 0.00 0.00 4.63
33 34 2.481185 GCGACAAGTAAAATGGAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
34 35 2.482721 AGCGACAAGTAAAATGGAACGG 59.517 45.455 0.00 0.00 0.00 4.44
35 36 3.185594 TCAGCGACAAGTAAAATGGAACG 59.814 43.478 0.00 0.00 0.00 3.95
36 37 4.742438 TCAGCGACAAGTAAAATGGAAC 57.258 40.909 0.00 0.00 0.00 3.62
37 38 5.957842 AATCAGCGACAAGTAAAATGGAA 57.042 34.783 0.00 0.00 0.00 3.53
38 39 5.957842 AAATCAGCGACAAGTAAAATGGA 57.042 34.783 0.00 0.00 0.00 3.41
39 40 9.221775 GTATTAAATCAGCGACAAGTAAAATGG 57.778 33.333 0.00 0.00 0.00 3.16
40 41 9.767684 TGTATTAAATCAGCGACAAGTAAAATG 57.232 29.630 0.00 0.00 0.00 2.32
43 44 9.601971 GTTTGTATTAAATCAGCGACAAGTAAA 57.398 29.630 0.00 0.00 0.00 2.01
44 45 7.953173 CGTTTGTATTAAATCAGCGACAAGTAA 59.047 33.333 0.00 0.00 0.00 2.24
45 46 7.412129 CCGTTTGTATTAAATCAGCGACAAGTA 60.412 37.037 0.00 0.00 0.00 2.24
46 47 6.304126 CGTTTGTATTAAATCAGCGACAAGT 58.696 36.000 0.00 0.00 0.00 3.16
47 48 5.732647 CCGTTTGTATTAAATCAGCGACAAG 59.267 40.000 0.00 0.00 0.00 3.16
48 49 5.408909 TCCGTTTGTATTAAATCAGCGACAA 59.591 36.000 0.00 0.00 0.00 3.18
49 50 4.930405 TCCGTTTGTATTAAATCAGCGACA 59.070 37.500 0.00 0.00 0.00 4.35
50 51 5.459110 TCCGTTTGTATTAAATCAGCGAC 57.541 39.130 0.00 0.00 0.00 5.19
51 52 4.569162 CCTCCGTTTGTATTAAATCAGCGA 59.431 41.667 0.00 0.00 0.00 4.93
52 53 4.260620 CCCTCCGTTTGTATTAAATCAGCG 60.261 45.833 0.00 0.00 0.00 5.18
53 54 4.036380 CCCCTCCGTTTGTATTAAATCAGC 59.964 45.833 0.00 0.00 0.00 4.26
54 55 4.578928 CCCCCTCCGTTTGTATTAAATCAG 59.421 45.833 0.00 0.00 0.00 2.90
55 56 4.018233 ACCCCCTCCGTTTGTATTAAATCA 60.018 41.667 0.00 0.00 0.00 2.57
56 57 4.529897 ACCCCCTCCGTTTGTATTAAATC 58.470 43.478 0.00 0.00 0.00 2.17
57 58 4.596354 ACCCCCTCCGTTTGTATTAAAT 57.404 40.909 0.00 0.00 0.00 1.40
58 59 5.222007 TGTTACCCCCTCCGTTTGTATTAAA 60.222 40.000 0.00 0.00 0.00 1.52
59 60 4.288105 TGTTACCCCCTCCGTTTGTATTAA 59.712 41.667 0.00 0.00 0.00 1.40
60 61 3.843027 TGTTACCCCCTCCGTTTGTATTA 59.157 43.478 0.00 0.00 0.00 0.98
61 62 2.643801 TGTTACCCCCTCCGTTTGTATT 59.356 45.455 0.00 0.00 0.00 1.89
62 63 2.268107 TGTTACCCCCTCCGTTTGTAT 58.732 47.619 0.00 0.00 0.00 2.29
63 64 1.727062 TGTTACCCCCTCCGTTTGTA 58.273 50.000 0.00 0.00 0.00 2.41
64 65 1.003928 GATGTTACCCCCTCCGTTTGT 59.996 52.381 0.00 0.00 0.00 2.83
65 66 1.280998 AGATGTTACCCCCTCCGTTTG 59.719 52.381 0.00 0.00 0.00 2.93
66 67 1.665137 AGATGTTACCCCCTCCGTTT 58.335 50.000 0.00 0.00 0.00 3.60
67 68 1.665137 AAGATGTTACCCCCTCCGTT 58.335 50.000 0.00 0.00 0.00 4.44
68 69 1.280998 CAAAGATGTTACCCCCTCCGT 59.719 52.381 0.00 0.00 0.00 4.69
69 70 2.017113 GCAAAGATGTTACCCCCTCCG 61.017 57.143 0.00 0.00 0.00 4.63
70 71 1.005450 TGCAAAGATGTTACCCCCTCC 59.995 52.381 0.00 0.00 0.00 4.30
71 72 2.507407 TGCAAAGATGTTACCCCCTC 57.493 50.000 0.00 0.00 0.00 4.30
72 73 3.527665 AGTATGCAAAGATGTTACCCCCT 59.472 43.478 0.00 0.00 0.00 4.79
73 74 3.632145 CAGTATGCAAAGATGTTACCCCC 59.368 47.826 0.00 0.00 0.00 5.40
74 75 4.900635 CAGTATGCAAAGATGTTACCCC 57.099 45.455 0.00 0.00 0.00 4.95
124 125 3.443045 GCCATGGCCGGTGACAAG 61.443 66.667 27.24 0.00 34.56 3.16
126 127 3.582242 AATGCCATGGCCGGTGACA 62.582 57.895 33.44 13.93 41.09 3.58
154 155 1.587547 GAATCTGGATCGGAAGCCAC 58.412 55.000 0.00 0.00 0.00 5.01
155 156 0.469917 GGAATCTGGATCGGAAGCCA 59.530 55.000 3.39 3.39 0.00 4.75
156 157 0.469917 TGGAATCTGGATCGGAAGCC 59.530 55.000 0.00 0.00 0.00 4.35
157 158 2.332063 TTGGAATCTGGATCGGAAGC 57.668 50.000 0.00 0.00 0.00 3.86
158 159 6.000219 ACATATTTGGAATCTGGATCGGAAG 59.000 40.000 0.00 0.00 0.00 3.46
159 160 5.940617 ACATATTTGGAATCTGGATCGGAA 58.059 37.500 0.00 0.00 0.00 4.30
161 162 5.563475 GCAACATATTTGGAATCTGGATCGG 60.563 44.000 0.00 0.00 0.00 4.18
162 163 5.455392 GCAACATATTTGGAATCTGGATCG 58.545 41.667 0.00 0.00 0.00 3.69
163 164 5.563475 CGGCAACATATTTGGAATCTGGATC 60.563 44.000 0.00 0.00 0.00 3.36
164 165 4.279169 CGGCAACATATTTGGAATCTGGAT 59.721 41.667 0.00 0.00 0.00 3.41
194 305 2.687566 ATCCCACGGGTCTCCACC 60.688 66.667 1.07 0.00 42.90 4.61
228 339 1.082117 CGTTCGGGGAGAAATGTCGG 61.082 60.000 0.00 0.00 41.10 4.79
231 342 1.071071 TGTTCGTTCGGGGAGAAATGT 59.929 47.619 0.00 0.00 41.10 2.71
241 352 0.249322 AGTGTCCTGTGTTCGTTCGG 60.249 55.000 0.00 0.00 0.00 4.30
294 405 2.437359 CCCTAGCCAGCTGCACAC 60.437 66.667 8.66 0.00 44.83 3.82
362 473 0.590682 TTTCACGTGCGTGCATGATT 59.409 45.000 20.13 0.00 45.04 2.57
371 482 1.320555 CCGTTAGATCTTTCACGTGCG 59.679 52.381 11.67 4.24 0.00 5.34
378 489 5.904080 CGAATGATTTGCCGTTAGATCTTTC 59.096 40.000 0.00 0.00 33.15 2.62
737 848 3.387050 AGTCGAGGACTGTACCTTGTTTT 59.613 43.478 0.00 0.78 41.76 2.43
738 849 2.963782 AGTCGAGGACTGTACCTTGTTT 59.036 45.455 0.00 2.45 41.76 2.83
799 1033 7.552458 AAACCATCAAAACTGGAATCAAAAC 57.448 32.000 0.00 0.00 37.22 2.43
1527 1792 1.491332 CCCACGGGAATAACATGGGTA 59.509 52.381 0.00 0.00 44.37 3.69
1633 1922 2.139323 AAGGATTTCCGGGCCTTTAC 57.861 50.000 0.84 0.00 38.85 2.01
1920 2224 5.409520 TGACAGACATGTATCTTTCAGTTGC 59.590 40.000 0.00 0.00 40.68 4.17
2223 2715 3.148412 AGCAGCATTGTTGTACATCACA 58.852 40.909 6.12 1.07 34.51 3.58
2348 4105 2.354821 GGGCTATTCAACGTTCCATGAC 59.645 50.000 0.00 0.00 0.00 3.06
2357 4114 3.251004 GCTTCTATTGGGGCTATTCAACG 59.749 47.826 0.00 0.00 0.00 4.10
2391 4154 9.436957 AGTGGTACTAGATCAAAATACAAACTG 57.563 33.333 0.00 0.00 0.00 3.16
2475 4238 1.002544 ACTTTGGTCCAGCTAGAGCAC 59.997 52.381 13.70 0.00 43.55 4.40
2525 4292 2.917713 AGGAGAGAGCTTCAAGGAGA 57.082 50.000 0.00 0.00 0.00 3.71
2597 4367 4.704540 TCATATTGTCGTTCCAATGCCTTT 59.295 37.500 7.61 0.00 35.85 3.11
2598 4368 4.269183 TCATATTGTCGTTCCAATGCCTT 58.731 39.130 7.61 0.00 35.85 4.35
2616 4386 4.062293 CCAACAACGAGGTTTGTCTCATA 58.938 43.478 0.00 0.00 38.82 2.15
2627 4397 0.307760 GTGAAGCACCAACAACGAGG 59.692 55.000 0.00 0.00 0.00 4.63
2656 4426 4.319177 CCAGGTAAGAGAAGTTGGTGAAG 58.681 47.826 0.00 0.00 0.00 3.02
2668 4438 0.908198 AGAAGGCAGCCAGGTAAGAG 59.092 55.000 15.80 0.00 0.00 2.85
2685 4455 2.032528 CGGCCCAGCAAGTGAAGA 59.967 61.111 0.00 0.00 0.00 2.87
2699 4472 3.142174 CCATTATTCCTCCTCTTTCGGC 58.858 50.000 0.00 0.00 0.00 5.54
2711 4490 4.406456 TGATGGTACCATGCCATTATTCC 58.594 43.478 32.07 13.36 45.87 3.01
2712 4491 5.316167 TCTGATGGTACCATGCCATTATTC 58.684 41.667 32.07 15.12 45.87 1.75
2713 4492 5.323382 TCTGATGGTACCATGCCATTATT 57.677 39.130 32.07 5.20 45.87 1.40
2720 4499 3.266510 TCACTTCTGATGGTACCATGC 57.733 47.619 32.07 21.49 36.70 4.06
2723 4502 2.027192 GCCTTCACTTCTGATGGTACCA 60.027 50.000 18.99 18.99 41.75 3.25
2934 4737 1.048601 AGACAACAGAAGAAGGCCGA 58.951 50.000 0.00 0.00 0.00 5.54
2950 6492 3.560503 CGGCGATCTTCTTCTCATAGAC 58.439 50.000 0.00 0.00 0.00 2.59
2951 6493 2.030717 GCGGCGATCTTCTTCTCATAGA 60.031 50.000 12.98 0.00 0.00 1.98
2952 6494 2.323959 GCGGCGATCTTCTTCTCATAG 58.676 52.381 12.98 0.00 0.00 2.23
2953 6495 1.000163 GGCGGCGATCTTCTTCTCATA 60.000 52.381 12.98 0.00 0.00 2.15
2954 6496 0.249657 GGCGGCGATCTTCTTCTCAT 60.250 55.000 12.98 0.00 0.00 2.90
3031 6582 5.242393 GGTGCTTGCTCCATGTATTATCATT 59.758 40.000 8.61 0.00 0.00 2.57
3037 6588 2.240667 AGAGGTGCTTGCTCCATGTATT 59.759 45.455 14.87 0.00 0.00 1.89
3153 6707 3.501828 CACCCAACAACTCGATCAATTGA 59.498 43.478 11.26 11.26 0.00 2.57
3156 6710 1.812571 GCACCCAACAACTCGATCAAT 59.187 47.619 0.00 0.00 0.00 2.57
3188 6742 1.028868 GGCATCCTTGAGCACCTCAC 61.029 60.000 0.00 0.00 40.46 3.51
3216 6770 2.203684 CCCCCAAGTTGCCTTGCT 60.204 61.111 0.00 0.00 45.57 3.91
3221 6775 4.299796 TCAGGCCCCCAAGTTGCC 62.300 66.667 0.00 0.00 45.70 4.52
3256 6810 1.529010 CAGCCAGCAACTCCCACAA 60.529 57.895 0.00 0.00 0.00 3.33
3369 6929 2.596851 GGTGAGCAAGGCCCAGAGA 61.597 63.158 0.00 0.00 0.00 3.10
3624 7214 1.364721 TCTCTCTCGCTCTCTTCACG 58.635 55.000 0.00 0.00 0.00 4.35
3633 7223 2.023673 CCAAGTCTCATCTCTCTCGCT 58.976 52.381 0.00 0.00 0.00 4.93
3660 7251 4.687483 CAGAACCGGTAAAACAACGATACT 59.313 41.667 8.00 0.00 0.00 2.12
3665 7256 2.211806 TCCAGAACCGGTAAAACAACG 58.788 47.619 8.00 0.00 0.00 4.10
3789 7395 2.014068 GCTAACAAGCCAGGCCAGTAG 61.014 57.143 8.22 6.26 0.00 2.57
3839 7457 1.141881 GACATGGACGGCGATCAGT 59.858 57.895 16.62 10.75 0.00 3.41
3921 7552 3.256631 AGTGTGCCATTCAATTTGGTCTC 59.743 43.478 0.00 0.00 36.57 3.36
3976 7607 1.001764 TTGCAGCCTGGACCATCAG 60.002 57.895 0.00 0.00 34.70 2.90
3977 7608 1.303561 GTTGCAGCCTGGACCATCA 60.304 57.895 0.00 0.00 0.00 3.07
3979 7610 2.036256 GGTTGCAGCCTGGACCAT 59.964 61.111 13.08 0.00 0.00 3.55
3980 7611 3.497115 TGGTTGCAGCCTGGACCA 61.497 61.111 21.11 11.42 0.00 4.02
3982 7613 2.985847 GGTGGTTGCAGCCTGGAC 60.986 66.667 21.11 10.42 0.00 4.02
3983 7614 2.844195 ATGGTGGTTGCAGCCTGGA 61.844 57.895 21.11 4.37 0.00 3.86
4002 7657 8.406297 TGACAGAAGATGTGTATGACTGTATAC 58.594 37.037 0.00 0.00 44.17 1.47
4003 7658 8.406297 GTGACAGAAGATGTGTATGACTGTATA 58.594 37.037 0.00 0.00 44.17 1.47
4007 7662 4.867047 GGTGACAGAAGATGTGTATGACTG 59.133 45.833 0.00 0.00 44.17 3.51
4008 7663 4.528206 TGGTGACAGAAGATGTGTATGACT 59.472 41.667 0.00 0.00 44.17 3.41
4009 7664 4.820897 TGGTGACAGAAGATGTGTATGAC 58.179 43.478 0.00 0.00 44.17 3.06
4010 7665 5.221621 TGTTGGTGACAGAAGATGTGTATGA 60.222 40.000 0.00 0.00 44.17 2.15
4011 7666 4.996758 TGTTGGTGACAGAAGATGTGTATG 59.003 41.667 0.00 0.00 44.17 2.39
4021 7677 2.503765 TGAGGTCTTGTTGGTGACAGAA 59.496 45.455 0.00 0.00 44.54 3.02
4038 7694 1.271543 TGAGTTGGCTGTTGGATGAGG 60.272 52.381 0.00 0.00 0.00 3.86
4041 7697 1.135199 GCATGAGTTGGCTGTTGGATG 60.135 52.381 0.00 0.00 0.00 3.51
4065 7721 5.304686 AGTGTGGTTGTTAGATTTCCTGA 57.695 39.130 0.00 0.00 0.00 3.86
4066 7722 6.391227 AAAGTGTGGTTGTTAGATTTCCTG 57.609 37.500 0.00 0.00 0.00 3.86
4091 7747 2.117156 ATCTGCATTGCGGTGCTCC 61.117 57.895 16.77 0.00 45.27 4.70
4096 7752 1.647545 CGTTCCATCTGCATTGCGGT 61.648 55.000 16.77 2.38 36.18 5.68
4098 7754 1.063006 CCGTTCCATCTGCATTGCG 59.937 57.895 3.84 0.00 0.00 4.85
4111 7767 2.370393 GCGTCAGGTCGTTCCGTTC 61.370 63.158 0.00 0.00 41.99 3.95
4113 7769 4.695231 CGCGTCAGGTCGTTCCGT 62.695 66.667 0.00 0.00 41.99 4.69
4117 7773 4.373116 ATGGCGCGTCAGGTCGTT 62.373 61.111 21.72 0.00 0.00 3.85
4118 7774 4.796231 GATGGCGCGTCAGGTCGT 62.796 66.667 21.72 0.00 0.00 4.34
4120 7776 4.796231 ACGATGGCGCGTCAGGTC 62.796 66.667 21.72 12.30 41.22 3.85
4127 7783 2.586079 AGGATTGACGATGGCGCG 60.586 61.111 0.00 0.00 42.48 6.86
4128 7784 1.521457 TGAGGATTGACGATGGCGC 60.521 57.895 0.00 0.00 42.48 6.53
4129 7785 0.460109 TGTGAGGATTGACGATGGCG 60.460 55.000 0.00 0.00 44.79 5.69
4130 7786 1.293924 CTGTGAGGATTGACGATGGC 58.706 55.000 0.00 0.00 0.00 4.40
4144 7800 1.067846 GTCGTATCAGTGTGGCTGTGA 60.068 52.381 0.00 0.00 45.23 3.58
4150 7806 1.132199 GCGTCGTCGTATCAGTGTGG 61.132 60.000 3.66 0.00 39.49 4.17
4181 7837 0.916581 GCGATCGCAATTGCCTTTTC 59.083 50.000 33.89 14.04 41.49 2.29
4311 7973 1.052124 CCCCCGTGTATGCTCCCTTA 61.052 60.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.