Multiple sequence alignment - TraesCS6B01G376300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G376300 chr6B 100.000 4100 0 0 1 4100 651018057 651022156 0.000000e+00 7572
1 TraesCS6B01G376300 chr6B 96.774 775 25 0 1 775 27590461 27591235 0.000000e+00 1293
2 TraesCS6B01G376300 chr6A 93.601 1766 82 17 2355 4100 578075033 578076787 0.000000e+00 2606
3 TraesCS6B01G376300 chr6A 94.058 1565 73 5 776 2337 578073500 578075047 0.000000e+00 2357
4 TraesCS6B01G376300 chr6D 95.775 1562 64 1 776 2337 431317638 431319197 0.000000e+00 2518
5 TraesCS6B01G376300 chr6D 92.445 953 44 9 2355 3287 431319183 431320127 0.000000e+00 1336
6 TraesCS6B01G376300 chr6D 92.751 538 27 8 3569 4097 431322390 431322924 0.000000e+00 767
7 TraesCS6B01G376300 chr6D 90.683 161 8 3 3380 3540 431322236 431322389 1.490000e-49 207
8 TraesCS6B01G376300 chr6D 98.361 61 1 0 3279 3339 431321989 431322049 1.560000e-19 108
9 TraesCS6B01G376300 chr2B 98.968 775 7 1 1 775 245114992 245114219 0.000000e+00 1386
10 TraesCS6B01G376300 chr2B 96.645 775 25 1 1 775 214383672 214384445 0.000000e+00 1286
11 TraesCS6B01G376300 chr3B 98.582 776 10 1 1 776 75727966 75727192 0.000000e+00 1371
12 TraesCS6B01G376300 chr4B 98.065 775 13 2 1 775 567596352 567597124 0.000000e+00 1347
13 TraesCS6B01G376300 chr7B 97.806 775 17 0 1 775 667167131 667166357 0.000000e+00 1338
14 TraesCS6B01G376300 chrUn 96.258 775 25 1 1 775 333102027 333101257 0.000000e+00 1267
15 TraesCS6B01G376300 chr3A 94.125 783 40 4 1 778 713961254 713962035 0.000000e+00 1186
16 TraesCS6B01G376300 chr5D 93.967 779 43 2 1 776 405529349 405528572 0.000000e+00 1175


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G376300 chr6B 651018057 651022156 4099 False 7572.0 7572 100.0000 1 4100 1 chr6B.!!$F2 4099
1 TraesCS6B01G376300 chr6B 27590461 27591235 774 False 1293.0 1293 96.7740 1 775 1 chr6B.!!$F1 774
2 TraesCS6B01G376300 chr6A 578073500 578076787 3287 False 2481.5 2606 93.8295 776 4100 2 chr6A.!!$F1 3324
3 TraesCS6B01G376300 chr6D 431317638 431322924 5286 False 987.2 2518 94.0030 776 4097 5 chr6D.!!$F1 3321
4 TraesCS6B01G376300 chr2B 245114219 245114992 773 True 1386.0 1386 98.9680 1 775 1 chr2B.!!$R1 774
5 TraesCS6B01G376300 chr2B 214383672 214384445 773 False 1286.0 1286 96.6450 1 775 1 chr2B.!!$F1 774
6 TraesCS6B01G376300 chr3B 75727192 75727966 774 True 1371.0 1371 98.5820 1 776 1 chr3B.!!$R1 775
7 TraesCS6B01G376300 chr4B 567596352 567597124 772 False 1347.0 1347 98.0650 1 775 1 chr4B.!!$F1 774
8 TraesCS6B01G376300 chr7B 667166357 667167131 774 True 1338.0 1338 97.8060 1 775 1 chr7B.!!$R1 774
9 TraesCS6B01G376300 chrUn 333101257 333102027 770 True 1267.0 1267 96.2580 1 775 1 chrUn.!!$R1 774
10 TraesCS6B01G376300 chr3A 713961254 713962035 781 False 1186.0 1186 94.1250 1 778 1 chr3A.!!$F1 777
11 TraesCS6B01G376300 chr5D 405528572 405529349 777 True 1175.0 1175 93.9670 1 776 1 chr5D.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 984 2.800788 ACCCCAGATCTCTAATCCTCCT 59.199 50.0 0.0 0.0 0.0 3.69 F
1540 1551 0.961753 GGGCTTTTGGACTTGGTGAG 59.038 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2211 0.606604 GTGAGAACTAACGAGGGCCA 59.393 55.0 6.18 0.00 0.00 5.36 R
3377 5436 2.206815 TGGCAATGTGCGCAAATATC 57.793 45.0 14.79 8.41 46.21 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
890 898 9.902196 TCAACGATCTTCTATAAATATACGCAA 57.098 29.630 0.00 0.00 0.00 4.85
976 984 2.800788 ACCCCAGATCTCTAATCCTCCT 59.199 50.000 0.00 0.00 0.00 3.69
978 986 3.837731 CCCCAGATCTCTAATCCTCCTTC 59.162 52.174 0.00 0.00 0.00 3.46
1108 1119 6.014771 AGGTTTCTCCTTCCTACAACTTTT 57.985 37.500 0.00 0.00 45.67 2.27
1174 1185 9.626045 GGGTAAAGTAATCTTCAATTTTCTGTG 57.374 33.333 0.00 0.00 32.90 3.66
1246 1257 8.750298 TGTTTGTTAGACCAAATTGTTCCTTAA 58.250 29.630 0.00 0.00 36.75 1.85
1261 1272 5.176592 GTTCCTTAAGACTGGCGATAGTTT 58.823 41.667 3.36 0.00 39.35 2.66
1376 1387 2.418368 AGACCTGCACAAAAGTGTCA 57.582 45.000 0.00 0.00 35.07 3.58
1540 1551 0.961753 GGGCTTTTGGACTTGGTGAG 59.038 55.000 0.00 0.00 0.00 3.51
1611 1622 8.394877 TCGAACACATTGTTTACATGGAATATC 58.605 33.333 0.00 0.00 41.28 1.63
1674 1685 6.785191 TCAAAGACAAACTACAGAAGCAAAG 58.215 36.000 0.00 0.00 0.00 2.77
1677 1688 7.859325 AAGACAAACTACAGAAGCAAAGTAA 57.141 32.000 0.00 0.00 0.00 2.24
1681 1692 9.516314 GACAAACTACAGAAGCAAAGTAATTTT 57.484 29.630 0.00 0.00 0.00 1.82
1801 1812 8.567285 ACCTTTTGATGACCTATTAAGTGAAG 57.433 34.615 0.00 0.00 0.00 3.02
2028 2039 6.839124 TGGCTGATGATTCTTATTTGTTGT 57.161 33.333 0.00 0.00 0.00 3.32
2061 2072 6.762702 ACTTAAAAAGTTCCCGTCAAAAGA 57.237 33.333 0.00 0.00 39.04 2.52
2189 2200 6.844097 GGGAAATTGATGTTTTACCCTACA 57.156 37.500 0.00 0.00 31.81 2.74
2196 2207 6.811253 TGATGTTTTACCCTACAATGTGAC 57.189 37.500 0.00 0.00 0.00 3.67
2200 2211 6.071984 TGTTTTACCCTACAATGTGACCATT 58.928 36.000 0.00 0.00 42.03 3.16
2207 2218 3.288099 AATGTGACCATTGGCCCTC 57.712 52.632 0.00 0.00 39.81 4.30
2212 2223 0.251916 TGACCATTGGCCCTCGTTAG 59.748 55.000 0.00 0.00 0.00 2.34
2264 2275 6.814954 TTCCAGTTCTTAGCATAGGATCTT 57.185 37.500 0.00 0.00 25.80 2.40
2322 2333 4.408596 TGCTCATAAGTGTATGATGGGTCA 59.591 41.667 0.00 0.00 44.07 4.02
2323 2334 5.104569 TGCTCATAAGTGTATGATGGGTCAA 60.105 40.000 0.00 0.00 44.07 3.18
2324 2335 6.000219 GCTCATAAGTGTATGATGGGTCAAT 59.000 40.000 0.00 0.00 44.07 2.57
2325 2336 6.148480 GCTCATAAGTGTATGATGGGTCAATC 59.852 42.308 0.00 0.00 44.07 2.67
2326 2337 7.379059 TCATAAGTGTATGATGGGTCAATCT 57.621 36.000 0.00 0.00 41.00 2.40
2327 2338 7.445121 TCATAAGTGTATGATGGGTCAATCTC 58.555 38.462 0.00 0.00 41.00 2.75
2328 2339 5.965033 AAGTGTATGATGGGTCAATCTCT 57.035 39.130 0.00 0.00 38.01 3.10
2329 2340 8.588472 CATAAGTGTATGATGGGTCAATCTCTA 58.412 37.037 0.00 0.00 39.72 2.43
2330 2341 7.437713 AAGTGTATGATGGGTCAATCTCTAA 57.562 36.000 0.00 0.00 38.01 2.10
2331 2342 7.437713 AGTGTATGATGGGTCAATCTCTAAA 57.562 36.000 0.00 0.00 38.01 1.85
2332 2343 7.504403 AGTGTATGATGGGTCAATCTCTAAAG 58.496 38.462 0.00 0.00 38.01 1.85
2333 2344 7.345653 AGTGTATGATGGGTCAATCTCTAAAGA 59.654 37.037 0.00 0.00 38.01 2.52
2334 2345 8.153550 GTGTATGATGGGTCAATCTCTAAAGAT 58.846 37.037 0.00 0.00 44.37 2.40
2335 2346 9.379770 TGTATGATGGGTCAATCTCTAAAGATA 57.620 33.333 0.00 0.00 41.54 1.98
2336 2347 9.868277 GTATGATGGGTCAATCTCTAAAGATAG 57.132 37.037 0.00 0.00 41.54 2.08
2337 2348 7.308450 TGATGGGTCAATCTCTAAAGATAGG 57.692 40.000 0.00 0.00 41.54 2.57
2338 2349 7.075797 TGATGGGTCAATCTCTAAAGATAGGA 58.924 38.462 0.00 0.00 41.54 2.94
2339 2350 7.736691 TGATGGGTCAATCTCTAAAGATAGGAT 59.263 37.037 0.00 0.00 41.54 3.24
2340 2351 7.937700 TGGGTCAATCTCTAAAGATAGGATT 57.062 36.000 0.00 0.00 41.54 3.01
2341 2352 7.967908 TGGGTCAATCTCTAAAGATAGGATTC 58.032 38.462 0.00 0.00 41.54 2.52
2342 2353 7.791766 TGGGTCAATCTCTAAAGATAGGATTCT 59.208 37.037 0.00 0.00 41.54 2.40
2343 2354 8.311109 GGGTCAATCTCTAAAGATAGGATTCTC 58.689 40.741 0.00 0.00 41.54 2.87
2344 2355 8.865090 GGTCAATCTCTAAAGATAGGATTCTCA 58.135 37.037 0.00 0.00 41.54 3.27
2466 2477 7.710676 TTGTACCAAACTACATTATGCCATT 57.289 32.000 0.00 0.00 0.00 3.16
2596 2609 6.458210 CAATTTTGCTAATGGTCAACTTCCT 58.542 36.000 0.00 0.00 0.00 3.36
2701 2715 4.928661 ACGCATCATACTTCTTGTTGAC 57.071 40.909 0.00 0.00 0.00 3.18
2788 2803 7.465173 AGAAGAAAAAGACAACGAAGAAGTTC 58.535 34.615 0.00 0.00 30.96 3.01
2887 2905 3.412386 AGCAGCTAGTTCGTTTTCCAAT 58.588 40.909 0.00 0.00 0.00 3.16
2888 2906 3.189287 AGCAGCTAGTTCGTTTTCCAATG 59.811 43.478 0.00 0.00 0.00 2.82
2889 2907 3.058224 GCAGCTAGTTCGTTTTCCAATGT 60.058 43.478 0.00 0.00 0.00 2.71
2890 2908 4.556699 GCAGCTAGTTCGTTTTCCAATGTT 60.557 41.667 0.00 0.00 0.00 2.71
2891 2909 5.519722 CAGCTAGTTCGTTTTCCAATGTTT 58.480 37.500 0.00 0.00 0.00 2.83
2892 2910 5.977129 CAGCTAGTTCGTTTTCCAATGTTTT 59.023 36.000 0.00 0.00 0.00 2.43
2893 2911 6.475402 CAGCTAGTTCGTTTTCCAATGTTTTT 59.525 34.615 0.00 0.00 0.00 1.94
3078 3100 3.683365 TCAGATGTTGCTGCAGAAGTA 57.317 42.857 20.43 0.00 35.86 2.24
3158 3191 4.940654 GCCTCCTTCAAATAGGATCTATGC 59.059 45.833 0.00 0.00 43.24 3.14
3163 3196 6.503217 TCCTTCAAATAGGATCTATGCCATCT 59.497 38.462 0.00 0.00 39.40 2.90
3339 5242 7.144722 CACATTTGCAAGTCTGGATTTACTA 57.855 36.000 0.00 0.00 0.00 1.82
3340 5243 7.592938 CACATTTGCAAGTCTGGATTTACTAA 58.407 34.615 0.00 0.00 0.00 2.24
3421 5480 2.826674 AATTCCCCACCACAATCGAT 57.173 45.000 0.00 0.00 0.00 3.59
3431 5490 4.154737 CCACCACAATCGATATGCCATAAG 59.845 45.833 0.00 0.00 0.00 1.73
3432 5491 4.996758 CACCACAATCGATATGCCATAAGA 59.003 41.667 0.00 0.00 0.00 2.10
3433 5492 5.469760 CACCACAATCGATATGCCATAAGAA 59.530 40.000 0.00 0.00 0.00 2.52
3434 5493 6.149973 CACCACAATCGATATGCCATAAGAAT 59.850 38.462 0.00 0.00 0.00 2.40
3435 5494 7.334171 CACCACAATCGATATGCCATAAGAATA 59.666 37.037 0.00 0.00 0.00 1.75
3436 5495 7.882791 ACCACAATCGATATGCCATAAGAATAA 59.117 33.333 0.00 0.00 0.00 1.40
3437 5496 8.177663 CCACAATCGATATGCCATAAGAATAAC 58.822 37.037 0.00 0.00 0.00 1.89
3470 5529 8.522178 ACTTTGTAATTTCTCAGTCGAGTAAG 57.478 34.615 0.00 0.00 40.44 2.34
3596 5660 6.279513 TCATGTTTGAGCGGGAAATAAAAT 57.720 33.333 0.00 0.00 0.00 1.82
3642 5711 8.942338 GGAACTCCCATAAAAATATTTTGTCC 57.058 34.615 14.04 2.57 34.14 4.02
3753 5822 6.419413 TCATTGTTTTTATTGGTTCGTCTTGC 59.581 34.615 0.00 0.00 0.00 4.01
3790 5859 8.681806 ACTTAGGTATTACTCTCCGACTTTAAC 58.318 37.037 0.00 0.00 0.00 2.01
3809 5878 6.688073 TTAACCTTCCTCTCATCTCTTGTT 57.312 37.500 0.00 0.00 0.00 2.83
3812 5881 5.555966 ACCTTCCTCTCATCTCTTGTTTTC 58.444 41.667 0.00 0.00 0.00 2.29
3825 5894 9.519905 CATCTCTTGTTTTCGCAAATATTTTTG 57.480 29.630 0.00 4.44 44.18 2.44
3826 5895 8.641499 TCTCTTGTTTTCGCAAATATTTTTGT 57.359 26.923 9.87 0.00 43.43 2.83
3833 5902 9.523730 GTTTTCGCAAATATTTTTGTACCATTC 57.476 29.630 9.87 0.00 43.43 2.67
3860 5934 1.593196 CGTTGACCGCCCATTCATAT 58.407 50.000 0.00 0.00 0.00 1.78
3879 5953 7.408132 TCATATTTTTCTGCACTATAGTCGC 57.592 36.000 15.97 15.97 0.00 5.19
3894 5968 9.490379 CACTATAGTCGCCCTTTAAGATTAATT 57.510 33.333 1.26 0.00 0.00 1.40
3987 6061 4.142622 CCATGTAAGGCACGCCATTATATG 60.143 45.833 11.35 16.47 38.92 1.78
3999 6073 7.464577 GCACGCCATTATATGTGTCTATATGTG 60.465 40.741 0.00 0.00 34.86 3.21
4001 6075 7.759886 ACGCCATTATATGTGTCTATATGTGAC 59.240 37.037 4.38 4.38 35.21 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 0.821301 TCTCGCTCAGCATCCTCGAT 60.821 55.000 0.00 0.00 0.00 3.59
444 448 4.020617 CCAAGGAGCGCCAGGACA 62.021 66.667 9.88 0.00 34.53 4.02
486 490 3.041940 CGCAACCTGACACGGACC 61.042 66.667 0.00 0.00 0.00 4.46
794 802 9.546428 GCATTAATTTTTGCCTAGGAAATGTAT 57.454 29.630 14.75 4.67 32.66 2.29
912 920 2.781757 TCTGCCTCCAATGGATCAGAAT 59.218 45.455 23.19 0.00 37.85 2.40
913 921 2.092753 GTCTGCCTCCAATGGATCAGAA 60.093 50.000 25.49 13.67 40.31 3.02
976 984 3.096852 TCAAGGTCTGGAGCTTATCGAA 58.903 45.455 13.54 0.00 46.20 3.71
978 986 3.068732 TGATCAAGGTCTGGAGCTTATCG 59.931 47.826 13.54 3.99 46.20 2.92
1032 1040 8.380099 TCTGTAACAGTAAACCATGAAGGTAAT 58.620 33.333 0.00 0.00 40.40 1.89
1246 1257 3.522553 GCAGTTAAACTATCGCCAGTCT 58.477 45.455 0.00 0.00 0.00 3.24
1325 1336 3.748568 CCAGCAAGTCTCTTCAAAGGTAC 59.251 47.826 0.00 0.00 0.00 3.34
1376 1387 7.286087 TCATCAAAATCATATAAGCAGCCAGTT 59.714 33.333 0.00 0.00 0.00 3.16
1489 1500 4.585162 CCCTCTATTGATCGGTACTTCTGT 59.415 45.833 0.00 0.00 0.00 3.41
1494 1505 4.145807 CACTCCCTCTATTGATCGGTACT 58.854 47.826 0.00 0.00 0.00 2.73
1540 1551 1.149148 GACAAGCAGGTTCGTCCTTC 58.851 55.000 0.00 0.00 45.67 3.46
1557 1568 3.735237 TGATATTCAGAGGCTTCGGAC 57.265 47.619 0.00 0.00 0.00 4.79
1579 1590 6.197364 TGTAAACAATGTGTTCGAACCTTT 57.803 33.333 24.78 16.16 40.14 3.11
1611 1622 8.784043 CATTTTAATCGAGGGGTTAAGGATAAG 58.216 37.037 0.00 0.00 0.00 1.73
1617 1628 7.968405 CAGAAACATTTTAATCGAGGGGTTAAG 59.032 37.037 0.00 0.00 0.00 1.85
1720 1731 3.321039 AGGTAATGATCCAGATGAGCCA 58.679 45.455 0.00 0.00 0.00 4.75
1871 1882 1.969923 CAGGGATTGCTGGACCAAAAA 59.030 47.619 0.00 0.00 0.00 1.94
1923 1934 5.391312 ACATACCTTGTTCCAAATTGAGC 57.609 39.130 0.00 0.00 33.74 4.26
2050 2061 7.971722 TCTTTAAGTTCTTTTTCTTTTGACGGG 59.028 33.333 0.00 0.00 0.00 5.28
2061 2072 6.669631 TCCCCAGTCTCTTTAAGTTCTTTTT 58.330 36.000 0.00 0.00 0.00 1.94
2140 2151 9.367444 CCTTCTTTTCAAGAGTAATACACGTAT 57.633 33.333 0.00 0.00 39.03 3.06
2145 2156 7.324388 TCCCCTTCTTTTCAAGAGTAATACA 57.676 36.000 0.00 0.00 39.03 2.29
2168 2179 9.139174 CACATTGTAGGGTAAAACATCAATTTC 57.861 33.333 0.00 0.00 0.00 2.17
2196 2207 1.065418 AGAACTAACGAGGGCCAATGG 60.065 52.381 6.18 0.00 0.00 3.16
2200 2211 0.606604 GTGAGAACTAACGAGGGCCA 59.393 55.000 6.18 0.00 0.00 5.36
2207 2218 7.792925 TGATTATTTGTGTGTGAGAACTAACG 58.207 34.615 0.00 0.00 0.00 3.18
2212 2223 6.016276 AGGGTTGATTATTTGTGTGTGAGAAC 60.016 38.462 0.00 0.00 0.00 3.01
2351 2362 7.928873 TGTCACCCCTATCTTTAGAGATTTTT 58.071 34.615 0.42 0.00 42.55 1.94
2352 2363 7.510675 TGTCACCCCTATCTTTAGAGATTTT 57.489 36.000 0.42 0.00 42.55 1.82
2353 2364 7.127955 ACATGTCACCCCTATCTTTAGAGATTT 59.872 37.037 0.42 0.00 42.55 2.17
2369 2380 2.699954 ACAAGATCGAACATGTCACCC 58.300 47.619 0.00 0.00 0.00 4.61
2510 2523 6.018832 CCAACTTGAGCATGTTTAACCAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
2518 2531 3.572255 GGGTTCCAACTTGAGCATGTTTA 59.428 43.478 0.00 0.00 0.00 2.01
2636 2650 7.606456 GTCTCAGTTTACAATATTCCACAAGGA 59.394 37.037 0.00 0.00 43.93 3.36
2682 2696 3.125146 TGCGTCAACAAGAAGTATGATGC 59.875 43.478 10.91 10.91 43.17 3.91
2685 2699 3.064207 GGTGCGTCAACAAGAAGTATGA 58.936 45.455 0.00 0.00 0.00 2.15
2987 3005 8.831715 AAAAATGACATTTCATGTTACCTTCC 57.168 30.769 13.68 0.00 45.03 3.46
3054 3072 4.082895 ACTTCTGCAGCAACATCTGAATTC 60.083 41.667 9.47 0.00 36.19 2.17
3071 3093 4.202245 TGGTCCCGATTCTTTACTTCTG 57.798 45.455 0.00 0.00 0.00 3.02
3078 3100 2.514458 AAGCATGGTCCCGATTCTTT 57.486 45.000 0.00 0.00 0.00 2.52
3149 3173 8.043113 TGTGTGATAATTAGATGGCATAGATCC 58.957 37.037 0.00 0.00 0.00 3.36
3377 5436 2.206815 TGGCAATGTGCGCAAATATC 57.793 45.000 14.79 8.41 46.21 1.63
3551 5610 7.421087 TGATGGCCATTCAATGAAGATTTTA 57.579 32.000 21.84 0.00 0.00 1.52
3596 5660 4.534500 TCCCATAGCTCACCAACTTAGAAA 59.466 41.667 0.00 0.00 0.00 2.52
3781 5850 5.126384 AGAGATGAGAGGAAGGTTAAAGTCG 59.874 44.000 0.00 0.00 0.00 4.18
3790 5859 4.629200 CGAAAACAAGAGATGAGAGGAAGG 59.371 45.833 0.00 0.00 0.00 3.46
3825 5894 4.142752 GGTCAACGCTTAAAGGAATGGTAC 60.143 45.833 0.00 0.00 0.00 3.34
3826 5895 4.004982 GGTCAACGCTTAAAGGAATGGTA 58.995 43.478 0.00 0.00 0.00 3.25
3860 5934 3.055385 AGGGCGACTATAGTGCAGAAAAA 60.055 43.478 10.90 0.00 0.00 1.94
3894 5968 6.139048 CATCTTGTGGATGCATGACATTAA 57.861 37.500 2.46 2.66 44.21 1.40
3987 6061 7.834068 ACATTGAACAGTCACATATAGACAC 57.166 36.000 9.40 1.16 38.46 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.