Multiple sequence alignment - TraesCS6B01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G376000 chr6B 100.000 4200 0 0 1 4200 650925904 650921705 0.000000e+00 7757.0
1 TraesCS6B01G376000 chr6B 86.332 1434 138 32 999 2382 650805515 650804090 0.000000e+00 1509.0
2 TraesCS6B01G376000 chr6B 89.605 1039 94 10 2442 3475 650804083 650803054 0.000000e+00 1308.0
3 TraesCS6B01G376000 chr6A 92.650 3279 168 29 958 4200 578039635 578036394 0.000000e+00 4652.0
4 TraesCS6B01G376000 chr6A 86.707 2332 214 46 999 3263 577881593 577879291 0.000000e+00 2501.0
5 TraesCS6B01G376000 chr6A 77.064 327 52 12 27 340 578041270 578040954 2.600000e-37 167.0
6 TraesCS6B01G376000 chr6D 92.072 2056 99 24 2167 4200 431268543 431266530 0.000000e+00 2835.0
7 TraesCS6B01G376000 chr6D 92.366 1192 79 6 944 2123 431270042 431268851 0.000000e+00 1687.0
8 TraesCS6B01G376000 chr6D 87.292 1440 131 31 999 2394 431210627 431209196 0.000000e+00 1598.0
9 TraesCS6B01G376000 chr6D 89.135 1040 95 11 2439 3475 431209204 431208180 0.000000e+00 1279.0
10 TraesCS6B01G376000 chr6D 86.684 383 43 4 3525 3905 431208180 431207804 6.490000e-113 418.0
11 TraesCS6B01G376000 chr6D 78.927 261 38 9 37 288 431272842 431272590 1.210000e-35 161.0
12 TraesCS6B01G376000 chr6D 84.028 144 10 5 1230 1362 3040882 3040741 4.410000e-25 126.0
13 TraesCS6B01G376000 chr6D 94.340 53 2 1 4148 4200 431204840 431204789 3.480000e-11 80.5
14 TraesCS6B01G376000 chr6D 83.784 74 5 3 217 288 431271528 431271460 3.510000e-06 63.9
15 TraesCS6B01G376000 chr2A 84.015 269 30 6 1113 1369 474320185 474319918 3.240000e-61 246.0
16 TraesCS6B01G376000 chr2A 97.297 37 1 0 1487 1523 474319917 474319881 3.510000e-06 63.9
17 TraesCS6B01G376000 chrUn 97.619 42 1 0 1487 1528 40196085 40196126 5.820000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G376000 chr6B 650921705 650925904 4199 True 7757.000 7757 100.00000 1 4200 1 chr6B.!!$R1 4199
1 TraesCS6B01G376000 chr6B 650803054 650805515 2461 True 1408.500 1509 87.96850 999 3475 2 chr6B.!!$R2 2476
2 TraesCS6B01G376000 chr6A 577879291 577881593 2302 True 2501.000 2501 86.70700 999 3263 1 chr6A.!!$R1 2264
3 TraesCS6B01G376000 chr6A 578036394 578041270 4876 True 2409.500 4652 84.85700 27 4200 2 chr6A.!!$R2 4173
4 TraesCS6B01G376000 chr6D 431266530 431272842 6312 True 1186.725 2835 86.78725 37 4200 4 chr6D.!!$R3 4163
5 TraesCS6B01G376000 chr6D 431204789 431210627 5838 True 843.875 1598 89.36275 999 4200 4 chr6D.!!$R2 3201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.034896 CGTGCCAAAGGTACTCAGGT 59.965 55.000 2.90 0.0 38.49 4.00 F
733 875 0.099613 CGGACCACTCGACTGATCTG 59.900 60.000 0.00 0.0 0.00 2.90 F
942 3248 0.108567 TGCTACGATACGCCTTGCAA 60.109 50.000 0.00 0.0 0.00 4.08 F
983 3291 0.966875 AATCTTGGCCATGCGCTTGA 60.967 50.000 23.56 3.8 37.74 3.02 F
2316 4981 1.202675 CCCAAATATGCCCATGCCAAC 60.203 52.381 0.00 0.0 36.33 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 3489 0.386858 CGAGACGACCGTGACATTGT 60.387 55.000 0.00 0.0 0.00 2.71 R
2232 4879 1.259609 CCAGCTGCTCCATTTTTGGA 58.740 50.000 8.66 0.0 36.40 3.53 R
2504 5183 2.203379 AGCTGCCATGCACACACA 60.203 55.556 0.00 0.0 33.79 3.72 R
2624 5303 3.925116 TCGATGTCGCATTGGTACACAAT 60.925 43.478 0.00 0.0 43.47 2.71 R
3207 5886 1.070758 GACCACAGACACCATGACACT 59.929 52.381 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.270352 TCTTTGATCGTGCCAAAGGT 57.730 45.000 18.87 0.00 46.25 3.50
20 21 3.410631 TCTTTGATCGTGCCAAAGGTA 57.589 42.857 18.87 6.00 46.25 3.08
21 22 3.071479 TCTTTGATCGTGCCAAAGGTAC 58.929 45.455 18.87 0.00 46.25 3.34
22 23 3.074412 CTTTGATCGTGCCAAAGGTACT 58.926 45.455 14.48 0.00 43.94 2.73
23 24 2.380084 TGATCGTGCCAAAGGTACTC 57.620 50.000 2.90 0.00 38.49 2.59
24 25 1.621317 TGATCGTGCCAAAGGTACTCA 59.379 47.619 2.90 0.00 38.49 3.41
25 26 2.271800 GATCGTGCCAAAGGTACTCAG 58.728 52.381 2.90 0.00 38.49 3.35
26 27 0.320374 TCGTGCCAAAGGTACTCAGG 59.680 55.000 2.90 0.00 38.49 3.86
27 28 0.034896 CGTGCCAAAGGTACTCAGGT 59.965 55.000 2.90 0.00 38.49 4.00
28 29 1.542547 CGTGCCAAAGGTACTCAGGTT 60.543 52.381 2.90 0.00 38.49 3.50
29 30 2.289195 CGTGCCAAAGGTACTCAGGTTA 60.289 50.000 2.90 0.00 38.49 2.85
30 31 3.072211 GTGCCAAAGGTACTCAGGTTAC 58.928 50.000 0.00 0.00 38.49 2.50
31 32 2.039348 TGCCAAAGGTACTCAGGTTACC 59.961 50.000 0.00 0.00 38.49 2.85
32 33 2.617276 GCCAAAGGTACTCAGGTTACCC 60.617 54.545 0.00 0.00 38.49 3.69
33 34 2.026542 CCAAAGGTACTCAGGTTACCCC 60.027 54.545 0.00 0.00 38.49 4.95
47 48 2.745821 GTTACCCCGTGAAGGATGAAAC 59.254 50.000 0.00 0.00 45.00 2.78
81 82 7.011950 TCTGTACATAATTTTAAGCGGGTGATG 59.988 37.037 0.00 0.00 0.00 3.07
83 84 5.197451 ACATAATTTTAAGCGGGTGATGGA 58.803 37.500 0.00 0.00 0.00 3.41
84 85 5.654650 ACATAATTTTAAGCGGGTGATGGAA 59.345 36.000 0.00 0.00 0.00 3.53
90 91 2.514458 AGCGGGTGATGGAAGAATTT 57.486 45.000 0.00 0.00 0.00 1.82
94 95 2.609459 CGGGTGATGGAAGAATTTCTCG 59.391 50.000 0.00 0.00 33.68 4.04
108 109 4.802424 CTCGAAGCGAGCAGACAT 57.198 55.556 3.76 0.00 46.75 3.06
110 111 0.457509 CTCGAAGCGAGCAGACATGT 60.458 55.000 0.00 0.00 46.75 3.21
113 114 1.151668 GAAGCGAGCAGACATGTTGT 58.848 50.000 0.00 0.00 0.00 3.32
116 117 2.544685 AGCGAGCAGACATGTTGTATC 58.455 47.619 0.00 3.27 0.00 2.24
125 126 5.526479 GCAGACATGTTGTATCAGTGATGAT 59.474 40.000 16.15 0.00 0.00 2.45
126 127 6.703165 GCAGACATGTTGTATCAGTGATGATA 59.297 38.462 16.15 0.93 0.00 2.15
127 128 7.225341 GCAGACATGTTGTATCAGTGATGATAA 59.775 37.037 16.15 5.31 33.17 1.75
129 130 9.486497 AGACATGTTGTATCAGTGATGATAATC 57.514 33.333 16.15 3.65 33.17 1.75
131 132 9.486497 ACATGTTGTATCAGTGATGATAATCTC 57.514 33.333 16.15 0.00 33.17 2.75
132 133 8.645487 CATGTTGTATCAGTGATGATAATCTCG 58.355 37.037 16.15 0.00 33.17 4.04
137 138 4.215109 TCAGTGATGATAATCTCGTCCCA 58.785 43.478 0.00 0.00 38.88 4.37
138 139 4.835056 TCAGTGATGATAATCTCGTCCCAT 59.165 41.667 0.00 0.00 38.88 4.00
141 142 5.305386 AGTGATGATAATCTCGTCCCATTGA 59.695 40.000 0.00 0.00 38.88 2.57
149 150 5.629079 ATCTCGTCCCATTGAAAAGAAAC 57.371 39.130 0.00 0.00 0.00 2.78
154 155 4.669197 CGTCCCATTGAAAAGAAACGCTAG 60.669 45.833 0.00 0.00 0.00 3.42
156 157 4.825085 TCCCATTGAAAAGAAACGCTAGTT 59.175 37.500 0.00 0.00 43.50 2.24
158 159 5.278266 CCCATTGAAAAGAAACGCTAGTTGA 60.278 40.000 0.00 0.00 41.05 3.18
160 161 6.863126 CCATTGAAAAGAAACGCTAGTTGATT 59.137 34.615 0.00 0.00 41.05 2.57
161 162 7.148918 CCATTGAAAAGAAACGCTAGTTGATTG 60.149 37.037 0.00 0.00 41.05 2.67
168 171 1.806542 ACGCTAGTTGATTGGTTGCAG 59.193 47.619 0.00 0.00 0.00 4.41
174 177 4.836125 AGTTGATTGGTTGCAGTAGTTG 57.164 40.909 0.00 0.00 0.00 3.16
179 182 6.012658 TGATTGGTTGCAGTAGTTGATTTC 57.987 37.500 0.00 0.00 0.00 2.17
182 185 4.460263 TGGTTGCAGTAGTTGATTTCTGT 58.540 39.130 0.00 0.00 0.00 3.41
189 192 6.646653 TGCAGTAGTTGATTTCTGTTACTCTG 59.353 38.462 0.00 0.00 0.00 3.35
231 238 6.700960 CAGAATAGGCTCAGATCTTTGTACTG 59.299 42.308 0.00 0.00 0.00 2.74
232 239 3.258971 AGGCTCAGATCTTTGTACTGC 57.741 47.619 0.00 0.00 0.00 4.40
233 240 2.836981 AGGCTCAGATCTTTGTACTGCT 59.163 45.455 0.00 0.00 0.00 4.24
234 241 3.262915 AGGCTCAGATCTTTGTACTGCTT 59.737 43.478 0.00 0.00 0.00 3.91
235 242 4.467795 AGGCTCAGATCTTTGTACTGCTTA 59.532 41.667 0.00 0.00 0.00 3.09
236 243 4.808364 GGCTCAGATCTTTGTACTGCTTAG 59.192 45.833 0.00 0.00 0.00 2.18
237 244 4.269844 GCTCAGATCTTTGTACTGCTTAGC 59.730 45.833 0.00 0.00 0.00 3.09
238 245 5.405935 TCAGATCTTTGTACTGCTTAGCA 57.594 39.130 6.76 6.76 36.92 3.49
239 246 5.982356 TCAGATCTTTGTACTGCTTAGCAT 58.018 37.500 7.58 0.78 38.13 3.79
240 247 6.409704 TCAGATCTTTGTACTGCTTAGCATT 58.590 36.000 7.58 4.56 38.13 3.56
241 248 6.881065 TCAGATCTTTGTACTGCTTAGCATTT 59.119 34.615 7.58 0.04 38.13 2.32
282 294 5.161358 TGTCTGTAACTCAAATACTCAGCG 58.839 41.667 0.00 0.00 0.00 5.18
288 300 7.094631 TGTAACTCAAATACTCAGCGTAACAT 58.905 34.615 0.00 0.00 0.00 2.71
290 302 7.757097 AACTCAAATACTCAGCGTAACATAG 57.243 36.000 0.00 0.00 0.00 2.23
291 303 7.096884 ACTCAAATACTCAGCGTAACATAGA 57.903 36.000 0.00 0.00 0.00 1.98
299 311 3.625764 TCAGCGTAACATAGATTTTGCCC 59.374 43.478 0.00 0.00 0.00 5.36
302 314 3.250040 GCGTAACATAGATTTTGCCCGAT 59.750 43.478 0.00 0.00 0.00 4.18
303 315 4.261031 GCGTAACATAGATTTTGCCCGATT 60.261 41.667 0.00 0.00 0.00 3.34
305 317 5.007234 CGTAACATAGATTTTGCCCGATTCA 59.993 40.000 0.00 0.00 0.00 2.57
308 320 6.279513 ACATAGATTTTGCCCGATTCAAAA 57.720 33.333 10.29 10.29 44.40 2.44
309 321 6.332630 ACATAGATTTTGCCCGATTCAAAAG 58.667 36.000 12.41 4.62 43.79 2.27
310 322 3.588955 AGATTTTGCCCGATTCAAAAGC 58.411 40.909 13.24 13.24 45.06 3.51
311 323 3.588955 GATTTTGCCCGATTCAAAAGCT 58.411 40.909 13.61 0.00 43.79 3.74
312 324 2.437200 TTTGCCCGATTCAAAAGCTG 57.563 45.000 0.00 0.00 31.27 4.24
313 325 1.614996 TTGCCCGATTCAAAAGCTGA 58.385 45.000 0.00 0.00 0.00 4.26
314 326 1.838112 TGCCCGATTCAAAAGCTGAT 58.162 45.000 0.00 0.00 32.78 2.90
315 327 2.997980 TGCCCGATTCAAAAGCTGATA 58.002 42.857 0.00 0.00 32.78 2.15
316 328 2.945008 TGCCCGATTCAAAAGCTGATAG 59.055 45.455 0.00 0.00 32.78 2.08
317 329 2.287248 GCCCGATTCAAAAGCTGATAGC 60.287 50.000 0.00 0.00 42.84 2.97
319 331 3.003068 CCCGATTCAAAAGCTGATAGCAG 59.997 47.826 2.90 2.90 45.56 4.24
320 332 3.873361 CCGATTCAAAAGCTGATAGCAGA 59.127 43.478 13.26 0.00 45.56 4.26
321 333 4.514441 CCGATTCAAAAGCTGATAGCAGAT 59.486 41.667 13.26 1.19 45.56 2.90
322 334 5.333952 CCGATTCAAAAGCTGATAGCAGATC 60.334 44.000 13.26 2.93 45.56 2.75
324 336 6.018098 CGATTCAAAAGCTGATAGCAGATCTT 60.018 38.462 13.26 3.49 45.56 2.40
325 337 7.170489 CGATTCAAAAGCTGATAGCAGATCTTA 59.830 37.037 13.26 0.00 45.56 2.10
351 461 4.216902 TCTGAAACAAAGCCATGATGACAG 59.783 41.667 0.00 0.00 0.00 3.51
401 515 2.126467 CAACAATTGCGTGTTTCTGGG 58.874 47.619 5.05 0.00 39.73 4.45
403 517 1.003262 CAATTGCGTGTTTCTGGGCG 61.003 55.000 0.00 0.00 0.00 6.13
404 518 1.452145 AATTGCGTGTTTCTGGGCGT 61.452 50.000 0.00 0.00 0.00 5.68
406 520 0.814410 TTGCGTGTTTCTGGGCGTTA 60.814 50.000 0.00 0.00 0.00 3.18
408 522 0.519961 GCGTGTTTCTGGGCGTTATT 59.480 50.000 0.00 0.00 0.00 1.40
409 523 1.068816 GCGTGTTTCTGGGCGTTATTT 60.069 47.619 0.00 0.00 0.00 1.40
410 524 2.606065 GCGTGTTTCTGGGCGTTATTTT 60.606 45.455 0.00 0.00 0.00 1.82
411 525 3.231160 CGTGTTTCTGGGCGTTATTTTC 58.769 45.455 0.00 0.00 0.00 2.29
412 526 3.058501 CGTGTTTCTGGGCGTTATTTTCT 60.059 43.478 0.00 0.00 0.00 2.52
413 527 4.226761 GTGTTTCTGGGCGTTATTTTCTG 58.773 43.478 0.00 0.00 0.00 3.02
414 528 3.886505 TGTTTCTGGGCGTTATTTTCTGT 59.113 39.130 0.00 0.00 0.00 3.41
415 529 4.226761 GTTTCTGGGCGTTATTTTCTGTG 58.773 43.478 0.00 0.00 0.00 3.66
416 530 3.134574 TCTGGGCGTTATTTTCTGTGT 57.865 42.857 0.00 0.00 0.00 3.72
417 531 3.482436 TCTGGGCGTTATTTTCTGTGTT 58.518 40.909 0.00 0.00 0.00 3.32
419 533 2.294791 TGGGCGTTATTTTCTGTGTTGG 59.705 45.455 0.00 0.00 0.00 3.77
420 534 2.352323 GGGCGTTATTTTCTGTGTTGGG 60.352 50.000 0.00 0.00 0.00 4.12
421 535 2.324860 GCGTTATTTTCTGTGTTGGGC 58.675 47.619 0.00 0.00 0.00 5.36
422 536 2.924880 GCGTTATTTTCTGTGTTGGGCC 60.925 50.000 0.00 0.00 0.00 5.80
423 537 2.667171 CGTTATTTTCTGTGTTGGGCCG 60.667 50.000 0.00 0.00 0.00 6.13
425 539 1.184970 ATTTTCTGTGTTGGGCCGGG 61.185 55.000 2.18 0.00 0.00 5.73
426 540 4.966787 TTCTGTGTTGGGCCGGGC 62.967 66.667 22.00 22.00 0.00 6.13
432 546 2.438795 GTTGGGCCGGGCGATTAA 60.439 61.111 23.19 11.46 0.00 1.40
433 547 1.826487 GTTGGGCCGGGCGATTAAT 60.826 57.895 23.19 0.00 0.00 1.40
434 548 1.527380 TTGGGCCGGGCGATTAATC 60.527 57.895 23.19 6.58 0.00 1.75
436 550 1.966451 GGGCCGGGCGATTAATCAG 60.966 63.158 23.19 9.13 0.00 2.90
437 551 1.966451 GGCCGGGCGATTAATCAGG 60.966 63.158 14.21 12.52 0.00 3.86
439 553 1.227823 CCGGGCGATTAATCAGGCA 60.228 57.895 24.14 0.00 0.00 4.75
440 554 1.230635 CCGGGCGATTAATCAGGCAG 61.231 60.000 24.14 21.37 0.00 4.85
441 555 1.845809 CGGGCGATTAATCAGGCAGC 61.846 60.000 24.14 15.74 0.00 5.25
443 557 1.312815 GGCGATTAATCAGGCAGCTT 58.687 50.000 20.64 0.00 0.00 3.74
444 558 1.002033 GGCGATTAATCAGGCAGCTTG 60.002 52.381 20.64 0.00 0.00 4.01
445 559 1.942657 GCGATTAATCAGGCAGCTTGA 59.057 47.619 10.05 10.05 0.00 3.02
447 561 3.004106 GCGATTAATCAGGCAGCTTGATT 59.996 43.478 29.53 29.53 44.86 2.57
448 562 4.781071 CGATTAATCAGGCAGCTTGATTC 58.219 43.478 30.28 18.42 42.58 2.52
449 563 4.610007 CGATTAATCAGGCAGCTTGATTCG 60.610 45.833 30.28 24.50 42.58 3.34
457 598 1.428448 CAGCTTGATTCGTTGACCGA 58.572 50.000 0.00 0.00 45.66 4.69
461 602 2.415168 GCTTGATTCGTTGACCGATCAA 59.585 45.455 0.00 0.00 46.75 2.57
464 605 2.857748 TGATTCGTTGACCGATCAATCG 59.142 45.455 0.00 1.67 46.43 3.34
477 618 5.094429 CGATCAATCGGCATGTTAATCAA 57.906 39.130 4.48 0.00 45.93 2.57
491 632 7.467811 GCATGTTAATCAAGTCACCAGATTAGG 60.468 40.741 0.00 0.00 36.10 2.69
492 633 7.252612 TGTTAATCAAGTCACCAGATTAGGA 57.747 36.000 0.00 0.00 36.10 2.94
494 635 7.038302 TGTTAATCAAGTCACCAGATTAGGACT 60.038 37.037 0.00 0.00 42.08 3.85
498 639 4.323569 AGTCACCAGATTAGGACTGAGA 57.676 45.455 0.00 0.00 39.04 3.27
499 640 4.877773 AGTCACCAGATTAGGACTGAGAT 58.122 43.478 0.00 0.00 39.04 2.75
500 641 5.276440 AGTCACCAGATTAGGACTGAGATT 58.724 41.667 0.00 0.00 39.04 2.40
501 642 5.128499 AGTCACCAGATTAGGACTGAGATTG 59.872 44.000 0.00 0.00 39.04 2.67
502 643 5.026121 TCACCAGATTAGGACTGAGATTGT 58.974 41.667 0.00 0.00 37.54 2.71
503 644 5.127845 TCACCAGATTAGGACTGAGATTGTC 59.872 44.000 0.00 0.00 37.54 3.18
504 645 5.026121 ACCAGATTAGGACTGAGATTGTCA 58.974 41.667 0.00 0.00 37.54 3.58
541 682 3.007398 GGATTAGAGCCGGAATCACATCT 59.993 47.826 5.05 0.00 34.36 2.90
545 686 4.696479 AGAGCCGGAATCACATCTAAAT 57.304 40.909 5.05 0.00 0.00 1.40
558 699 7.700322 TCACATCTAAATCACGAGCTAATTC 57.300 36.000 0.00 0.00 0.00 2.17
564 705 1.640428 TCACGAGCTAATTCAAGGCG 58.360 50.000 0.00 0.00 0.00 5.52
566 707 0.535335 ACGAGCTAATTCAAGGCGGA 59.465 50.000 0.00 0.00 0.00 5.54
579 720 1.069935 GGCGGATCTTCAGGCTACC 59.930 63.158 0.00 0.00 34.54 3.18
582 723 1.808133 GCGGATCTTCAGGCTACCAAG 60.808 57.143 0.00 0.00 0.00 3.61
584 725 2.693591 CGGATCTTCAGGCTACCAAGTA 59.306 50.000 0.00 0.00 0.00 2.24
586 727 4.443621 GGATCTTCAGGCTACCAAGTAAC 58.556 47.826 0.00 0.00 0.00 2.50
587 728 3.975168 TCTTCAGGCTACCAAGTAACC 57.025 47.619 0.00 0.00 0.00 2.85
588 729 2.232941 TCTTCAGGCTACCAAGTAACCG 59.767 50.000 0.00 0.00 30.40 4.44
589 730 0.248289 TCAGGCTACCAAGTAACCGC 59.752 55.000 0.00 0.00 30.40 5.68
590 731 0.249398 CAGGCTACCAAGTAACCGCT 59.751 55.000 0.00 0.00 30.40 5.52
591 732 0.535797 AGGCTACCAAGTAACCGCTC 59.464 55.000 0.00 0.00 30.40 5.03
629 771 3.006247 GCAACAAAAGTTTTCCCTGCAA 58.994 40.909 15.80 0.00 0.00 4.08
669 811 5.719173 CCAAGAGGACACAAACAAAGAAAA 58.281 37.500 0.00 0.00 36.89 2.29
670 812 6.162777 CCAAGAGGACACAAACAAAGAAAAA 58.837 36.000 0.00 0.00 36.89 1.94
687 829 0.517316 AAAACACGCCTTCGATCTGC 59.483 50.000 0.00 0.00 39.41 4.26
696 838 2.289565 CCTTCGATCTGCCTTTTACCC 58.710 52.381 0.00 0.00 0.00 3.69
700 842 3.343617 TCGATCTGCCTTTTACCCTTTG 58.656 45.455 0.00 0.00 0.00 2.77
701 843 3.008594 TCGATCTGCCTTTTACCCTTTGA 59.991 43.478 0.00 0.00 0.00 2.69
707 849 3.892588 TGCCTTTTACCCTTTGATCGTTT 59.107 39.130 0.00 0.00 0.00 3.60
711 853 0.800012 TACCCTTTGATCGTTTGCGC 59.200 50.000 0.00 0.00 38.14 6.09
727 869 4.057428 GCTGCGGACCACTCGACT 62.057 66.667 0.00 0.00 0.00 4.18
729 871 2.596338 TGCGGACCACTCGACTGA 60.596 61.111 0.00 0.00 0.00 3.41
730 872 1.938657 CTGCGGACCACTCGACTGAT 61.939 60.000 0.00 0.00 0.00 2.90
732 874 1.658686 GCGGACCACTCGACTGATCT 61.659 60.000 0.00 0.00 0.00 2.75
733 875 0.099613 CGGACCACTCGACTGATCTG 59.900 60.000 0.00 0.00 0.00 2.90
734 876 1.178276 GGACCACTCGACTGATCTGT 58.822 55.000 4.73 4.73 0.00 3.41
735 877 1.135257 GGACCACTCGACTGATCTGTG 60.135 57.143 10.29 3.31 0.00 3.66
736 878 1.813178 GACCACTCGACTGATCTGTGA 59.187 52.381 10.29 7.22 32.21 3.58
737 879 1.815613 ACCACTCGACTGATCTGTGAG 59.184 52.381 20.28 20.28 32.21 3.51
738 880 1.468908 CCACTCGACTGATCTGTGAGC 60.469 57.143 21.10 6.16 32.21 4.26
739 881 0.449786 ACTCGACTGATCTGTGAGCG 59.550 55.000 21.10 14.76 0.00 5.03
740 882 0.865218 CTCGACTGATCTGTGAGCGC 60.865 60.000 10.29 0.00 0.00 5.92
741 883 1.153958 CGACTGATCTGTGAGCGCA 60.154 57.895 11.47 0.00 0.00 6.09
742 884 0.527169 CGACTGATCTGTGAGCGCAT 60.527 55.000 11.47 0.00 0.00 4.73
750 892 0.449388 CTGTGAGCGCATTTTCCTCC 59.551 55.000 11.47 0.00 0.00 4.30
756 898 0.383231 GCGCATTTTCCTCCATCCAG 59.617 55.000 0.30 0.00 0.00 3.86
771 913 1.226542 CCAGTGATGGCCAGCATCT 59.773 57.895 29.01 21.89 0.00 2.90
772 914 0.818445 CCAGTGATGGCCAGCATCTC 60.818 60.000 29.01 14.83 0.00 2.75
773 915 1.145598 AGTGATGGCCAGCATCTCG 59.854 57.895 29.01 0.00 0.00 4.04
774 916 1.153289 GTGATGGCCAGCATCTCGT 60.153 57.895 29.01 0.00 0.00 4.18
791 933 1.002366 CGTTTCTTGCTCCAGATCGG 58.998 55.000 0.00 0.00 0.00 4.18
792 934 0.729690 GTTTCTTGCTCCAGATCGGC 59.270 55.000 0.00 0.00 33.14 5.54
801 943 2.574018 CCAGATCGGCCGCCATCTA 61.574 63.158 24.29 6.73 0.00 1.98
802 944 1.373497 CAGATCGGCCGCCATCTAC 60.373 63.158 24.29 9.65 0.00 2.59
803 945 2.048127 GATCGGCCGCCATCTACC 60.048 66.667 23.51 0.00 0.00 3.18
804 946 2.842462 ATCGGCCGCCATCTACCA 60.842 61.111 23.51 0.00 0.00 3.25
805 947 2.377628 GATCGGCCGCCATCTACCAA 62.378 60.000 23.51 0.00 0.00 3.67
806 948 1.978455 ATCGGCCGCCATCTACCAAA 61.978 55.000 23.51 0.00 0.00 3.28
808 950 2.481471 GGCCGCCATCTACCAAAGC 61.481 63.158 3.91 0.00 0.00 3.51
830 979 1.196911 CCCACAATCCAACCATGCAT 58.803 50.000 0.00 0.00 0.00 3.96
838 987 1.894466 TCCAACCATGCATTGTTGAGG 59.106 47.619 33.70 22.89 43.50 3.86
841 990 3.517602 CAACCATGCATTGTTGAGGATG 58.482 45.455 30.27 14.29 43.50 3.51
845 994 3.700539 CCATGCATTGTTGAGGATGGTTA 59.299 43.478 0.00 0.00 0.00 2.85
858 1007 2.036346 GGATGGTTAATGGATTGGCAGC 59.964 50.000 0.00 0.00 0.00 5.25
859 1008 2.228545 TGGTTAATGGATTGGCAGCA 57.771 45.000 0.00 0.00 0.00 4.41
860 1009 2.533916 TGGTTAATGGATTGGCAGCAA 58.466 42.857 0.00 0.00 0.00 3.91
861 1010 2.233431 TGGTTAATGGATTGGCAGCAAC 59.767 45.455 0.00 0.00 0.00 4.17
864 1020 1.636148 AATGGATTGGCAGCAACTGT 58.364 45.000 0.00 0.00 33.43 3.55
865 1021 1.636148 ATGGATTGGCAGCAACTGTT 58.364 45.000 0.00 0.00 33.43 3.16
867 1023 2.806434 TGGATTGGCAGCAACTGTTAT 58.194 42.857 0.00 0.00 33.43 1.89
870 1026 4.040217 TGGATTGGCAGCAACTGTTATTTT 59.960 37.500 0.00 0.00 33.43 1.82
875 1031 4.099266 TGGCAGCAACTGTTATTTTGACTT 59.901 37.500 0.00 0.00 33.43 3.01
876 1032 4.681483 GGCAGCAACTGTTATTTTGACTTC 59.319 41.667 0.00 0.00 33.43 3.01
883 1040 9.129209 GCAACTGTTATTTTGACTTCTTATTCC 57.871 33.333 0.00 0.00 0.00 3.01
884 1041 9.626045 CAACTGTTATTTTGACTTCTTATTCCC 57.374 33.333 0.00 0.00 0.00 3.97
886 1043 9.232473 ACTGTTATTTTGACTTCTTATTCCCTC 57.768 33.333 0.00 0.00 0.00 4.30
894 1051 9.449719 TTTGACTTCTTATTCCCTCTTAATCAC 57.550 33.333 0.00 0.00 0.00 3.06
895 1052 8.380742 TGACTTCTTATTCCCTCTTAATCACT 57.619 34.615 0.00 0.00 0.00 3.41
896 1053 9.488762 TGACTTCTTATTCCCTCTTAATCACTA 57.511 33.333 0.00 0.00 0.00 2.74
901 1058 8.204836 TCTTATTCCCTCTTAATCACTAACTGC 58.795 37.037 0.00 0.00 0.00 4.40
902 1059 5.755409 TTCCCTCTTAATCACTAACTGCA 57.245 39.130 0.00 0.00 0.00 4.41
903 1060 5.344743 TCCCTCTTAATCACTAACTGCAG 57.655 43.478 13.48 13.48 0.00 4.41
906 1063 4.872691 CCTCTTAATCACTAACTGCAGTGG 59.127 45.833 22.49 18.36 44.98 4.00
908 1065 6.351033 CCTCTTAATCACTAACTGCAGTGGTA 60.351 42.308 22.49 9.21 44.98 3.25
909 1066 6.999950 TCTTAATCACTAACTGCAGTGGTAA 58.000 36.000 22.49 9.34 44.98 2.85
910 1067 7.097192 TCTTAATCACTAACTGCAGTGGTAAG 58.903 38.462 22.49 19.40 44.98 2.34
911 1068 4.891992 ATCACTAACTGCAGTGGTAAGT 57.108 40.909 22.49 17.82 44.98 2.24
912 1069 5.995565 ATCACTAACTGCAGTGGTAAGTA 57.004 39.130 22.49 6.83 44.98 2.24
913 1070 5.386958 TCACTAACTGCAGTGGTAAGTAG 57.613 43.478 22.49 18.53 44.98 2.57
914 1071 3.927142 CACTAACTGCAGTGGTAAGTAGC 59.073 47.826 22.49 0.00 41.88 3.58
915 1072 2.474410 AACTGCAGTGGTAAGTAGCC 57.526 50.000 22.49 0.00 0.00 3.93
916 1073 0.613777 ACTGCAGTGGTAAGTAGCCC 59.386 55.000 20.97 0.00 0.00 5.19
919 1076 1.702957 TGCAGTGGTAAGTAGCCCTTT 59.297 47.619 0.00 0.00 34.46 3.11
920 1077 2.290071 TGCAGTGGTAAGTAGCCCTTTC 60.290 50.000 0.00 0.00 34.46 2.62
921 1078 2.940083 GCAGTGGTAAGTAGCCCTTTCC 60.940 54.545 0.00 3.30 40.17 3.13
922 1079 1.914108 AGTGGTAAGTAGCCCTTTCCC 59.086 52.381 6.85 2.55 39.28 3.97
923 1080 1.914108 GTGGTAAGTAGCCCTTTCCCT 59.086 52.381 6.85 0.00 39.28 4.20
924 1081 1.913419 TGGTAAGTAGCCCTTTCCCTG 59.087 52.381 6.85 0.00 39.28 4.45
926 3232 1.560146 GTAAGTAGCCCTTTCCCTGCT 59.440 52.381 0.00 0.00 39.10 4.24
930 3236 0.324923 TAGCCCTTTCCCTGCTACGA 60.325 55.000 0.00 0.00 36.57 3.43
934 3240 1.269621 CCCTTTCCCTGCTACGATACG 60.270 57.143 0.00 0.00 0.00 3.06
935 3241 1.488527 CTTTCCCTGCTACGATACGC 58.511 55.000 0.00 0.00 0.00 4.42
937 3243 0.754217 TTCCCTGCTACGATACGCCT 60.754 55.000 0.00 0.00 0.00 5.52
938 3244 0.754217 TCCCTGCTACGATACGCCTT 60.754 55.000 0.00 0.00 0.00 4.35
939 3245 0.597637 CCCTGCTACGATACGCCTTG 60.598 60.000 0.00 0.00 0.00 3.61
942 3248 0.108567 TGCTACGATACGCCTTGCAA 60.109 50.000 0.00 0.00 0.00 4.08
951 3258 2.427410 GCCTTGCAACACGCGAAG 60.427 61.111 15.93 7.57 46.97 3.79
972 3280 6.251376 CGAAGTGTTGCTATAAAAATCTTGGC 59.749 38.462 0.00 0.00 0.00 4.52
977 3285 4.947645 TGCTATAAAAATCTTGGCCATGC 58.052 39.130 6.09 0.00 0.00 4.06
983 3291 0.966875 AATCTTGGCCATGCGCTTGA 60.967 50.000 23.56 3.80 37.74 3.02
1172 3489 2.338620 CTCCAGTGTTGTCGGCGA 59.661 61.111 4.99 4.99 0.00 5.54
1192 3509 1.443872 AATGTCACGGTCGTCTCGC 60.444 57.895 0.00 0.00 0.00 5.03
1232 3549 2.434884 CGTCACCGCCATCTGCTT 60.435 61.111 0.00 0.00 38.05 3.91
1374 3691 3.470567 GCACGCAACCTCTCGTCG 61.471 66.667 0.00 0.00 36.73 5.12
1532 3849 1.734477 CGCTCACGAACCAGGACAG 60.734 63.158 0.00 0.00 43.93 3.51
1729 4067 1.228337 TCCGACCACGACAGGAAGA 60.228 57.895 0.00 0.00 42.66 2.87
2105 4459 1.909700 TGAAATCAAGGACCACTGCC 58.090 50.000 0.00 0.00 0.00 4.85
2149 4514 5.047802 ACTCGATCTTCAATTTGGTTGCAAT 60.048 36.000 0.59 0.00 37.74 3.56
2150 4515 5.401550 TCGATCTTCAATTTGGTTGCAATC 58.598 37.500 0.59 1.16 37.74 2.67
2232 4879 4.226427 TCATCCATGCTAAAGCTGAAGT 57.774 40.909 3.26 0.00 42.66 3.01
2316 4981 1.202675 CCCAAATATGCCCATGCCAAC 60.203 52.381 0.00 0.00 36.33 3.77
2344 5009 4.917998 CGATTTGGTCACTAGATCCATACG 59.082 45.833 0.00 4.94 0.00 3.06
2362 5027 6.314400 TCCATACGCTTTTCACCACTTTATAC 59.686 38.462 0.00 0.00 0.00 1.47
2382 5047 3.668447 ACCATCCATCTCATCGCAATAC 58.332 45.455 0.00 0.00 0.00 1.89
2383 5048 3.326006 ACCATCCATCTCATCGCAATACT 59.674 43.478 0.00 0.00 0.00 2.12
2388 5056 4.931601 TCCATCTCATCGCAATACTTATGC 59.068 41.667 0.00 0.00 40.41 3.14
2396 5064 3.802139 TCGCAATACTTATGCTGCACTAC 59.198 43.478 3.57 0.00 41.64 2.73
2414 5085 5.542779 CACTACCAGTAGAAGATAATGGGC 58.457 45.833 11.71 0.00 37.03 5.36
2478 5156 4.022935 GTCACTCACATGCATCTTTTCCAA 60.023 41.667 0.00 0.00 0.00 3.53
2504 5183 3.191735 GCTAACGCGTTTAATGTGGTT 57.808 42.857 31.50 3.53 0.00 3.67
2575 5254 1.809619 CATCATCAACGACGCCGGT 60.810 57.895 1.90 0.00 40.78 5.28
2624 5303 4.671590 TCGGTGGCGACCTCTCCA 62.672 66.667 16.47 0.00 40.58 3.86
2842 5521 1.107945 CCGACCCAAACCAAAACACT 58.892 50.000 0.00 0.00 0.00 3.55
2968 5647 0.326595 AGAGCTCTCTCGACCACTCA 59.673 55.000 11.45 0.00 44.02 3.41
3040 5719 3.290710 GTTGTACTACGGGGAGTATGGA 58.709 50.000 0.00 0.00 34.50 3.41
3207 5886 4.649674 CACTTCAGGGCTATGACTAAGGTA 59.350 45.833 0.00 0.00 0.00 3.08
3233 5913 1.302033 GGTGTCTGTGGTCTGCTGG 60.302 63.158 0.00 0.00 0.00 4.85
3263 5943 7.451255 ACTTGAAAAATGGAACCAGATCACATA 59.549 33.333 0.00 0.00 0.00 2.29
3264 5944 7.959658 TGAAAAATGGAACCAGATCACATAT 57.040 32.000 0.00 0.00 0.00 1.78
3265 5945 9.473007 TTGAAAAATGGAACCAGATCACATATA 57.527 29.630 0.00 0.00 0.00 0.86
3274 5954 9.256228 GGAACCAGATCACATATATAAGGACTA 57.744 37.037 0.00 0.00 0.00 2.59
3497 6177 3.532542 CTCCCTTTGTCCCGAATTACTC 58.467 50.000 0.00 0.00 0.00 2.59
3714 6403 5.181245 GCAACAAAATACACCTTCAGAGCTA 59.819 40.000 0.00 0.00 0.00 3.32
3784 6474 1.279558 TCTAGGGCAAATGCGTAACCA 59.720 47.619 0.00 0.00 43.26 3.67
3846 6536 7.412781 GCAGAACAATGAGTAGATGTTTGAGAG 60.413 40.741 0.00 0.00 37.41 3.20
3897 6587 1.160329 GGCTACGCATGGCTAGTTGG 61.160 60.000 0.00 0.00 31.71 3.77
3901 6591 1.165270 ACGCATGGCTAGTTGGTTTC 58.835 50.000 0.00 0.00 0.00 2.78
3905 6595 3.352648 GCATGGCTAGTTGGTTTCCTAA 58.647 45.455 0.00 0.00 0.00 2.69
3912 6602 8.480133 TGGCTAGTTGGTTTCCTAAAAATAAA 57.520 30.769 0.00 0.00 0.00 1.40
3913 6603 9.095700 TGGCTAGTTGGTTTCCTAAAAATAAAT 57.904 29.630 0.00 0.00 0.00 1.40
3998 9289 6.039829 GCCCTGAATTATCCCAGAAAGTTAAG 59.960 42.308 0.00 0.00 32.37 1.85
4119 9515 6.812998 AGAATCTGGATTATGTGCCAAAATG 58.187 36.000 0.00 0.00 32.95 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.074412 AGTACCTTTGGCACGATCAAAG 58.926 45.455 16.68 16.68 46.22 2.77
3 4 2.037902 TGAGTACCTTTGGCACGATCAA 59.962 45.455 0.00 0.00 0.00 2.57
4 5 1.621317 TGAGTACCTTTGGCACGATCA 59.379 47.619 0.00 0.00 0.00 2.92
5 6 2.271800 CTGAGTACCTTTGGCACGATC 58.728 52.381 0.00 0.00 0.00 3.69
6 7 1.066143 CCTGAGTACCTTTGGCACGAT 60.066 52.381 0.00 0.00 0.00 3.73
7 8 0.320374 CCTGAGTACCTTTGGCACGA 59.680 55.000 0.00 0.00 0.00 4.35
8 9 0.034896 ACCTGAGTACCTTTGGCACG 59.965 55.000 0.00 0.00 0.00 5.34
9 10 2.271944 AACCTGAGTACCTTTGGCAC 57.728 50.000 0.00 0.00 0.00 5.01
10 11 2.039348 GGTAACCTGAGTACCTTTGGCA 59.961 50.000 0.00 0.00 0.00 4.92
11 12 2.708051 GGTAACCTGAGTACCTTTGGC 58.292 52.381 0.00 0.00 0.00 4.52
26 27 2.745821 GTTTCATCCTTCACGGGGTAAC 59.254 50.000 0.00 0.00 0.00 2.50
27 28 2.290450 GGTTTCATCCTTCACGGGGTAA 60.290 50.000 0.00 0.00 0.00 2.85
28 29 1.279846 GGTTTCATCCTTCACGGGGTA 59.720 52.381 0.00 0.00 0.00 3.69
29 30 0.037734 GGTTTCATCCTTCACGGGGT 59.962 55.000 0.00 0.00 0.00 4.95
30 31 1.024579 CGGTTTCATCCTTCACGGGG 61.025 60.000 0.00 0.00 0.00 5.73
31 32 1.024579 CCGGTTTCATCCTTCACGGG 61.025 60.000 0.00 0.00 36.45 5.28
32 33 1.024579 CCCGGTTTCATCCTTCACGG 61.025 60.000 0.00 0.00 39.54 4.94
33 34 0.036765 TCCCGGTTTCATCCTTCACG 60.037 55.000 0.00 0.00 0.00 4.35
47 48 3.447918 AATTATGTACAGACGTCCCGG 57.552 47.619 13.01 4.86 0.00 5.73
54 55 6.314400 TCACCCGCTTAAAATTATGTACAGAC 59.686 38.462 0.33 0.00 0.00 3.51
55 56 6.408035 TCACCCGCTTAAAATTATGTACAGA 58.592 36.000 0.33 0.00 0.00 3.41
94 95 1.151668 ACAACATGTCTGCTCGCTTC 58.848 50.000 0.00 0.00 0.00 3.86
101 102 4.872124 TCATCACTGATACAACATGTCTGC 59.128 41.667 0.00 0.00 0.00 4.26
102 103 8.652810 TTATCATCACTGATACAACATGTCTG 57.347 34.615 0.00 2.58 42.66 3.51
103 104 9.486497 GATTATCATCACTGATACAACATGTCT 57.514 33.333 0.00 0.00 42.66 3.41
108 109 7.716612 ACGAGATTATCATCACTGATACAACA 58.283 34.615 0.00 0.00 42.66 3.33
110 111 7.371159 GGACGAGATTATCATCACTGATACAA 58.629 38.462 0.00 0.00 42.66 2.41
113 114 6.010219 TGGGACGAGATTATCATCACTGATA 58.990 40.000 0.00 0.00 42.23 2.15
116 117 4.590850 TGGGACGAGATTATCATCACTG 57.409 45.455 0.00 0.00 0.00 3.66
125 126 6.128391 CGTTTCTTTTCAATGGGACGAGATTA 60.128 38.462 0.00 0.00 0.00 1.75
126 127 5.334879 CGTTTCTTTTCAATGGGACGAGATT 60.335 40.000 0.00 0.00 0.00 2.40
127 128 4.154195 CGTTTCTTTTCAATGGGACGAGAT 59.846 41.667 0.00 0.00 0.00 2.75
129 130 3.810373 CGTTTCTTTTCAATGGGACGAG 58.190 45.455 0.00 0.00 0.00 4.18
131 132 2.031157 AGCGTTTCTTTTCAATGGGACG 60.031 45.455 0.00 0.00 0.00 4.79
132 133 3.643159 AGCGTTTCTTTTCAATGGGAC 57.357 42.857 0.00 0.00 0.00 4.46
137 138 6.863126 CCAATCAACTAGCGTTTCTTTTCAAT 59.137 34.615 0.00 0.00 0.00 2.57
138 139 6.183360 ACCAATCAACTAGCGTTTCTTTTCAA 60.183 34.615 0.00 0.00 0.00 2.69
141 142 5.767816 ACCAATCAACTAGCGTTTCTTTT 57.232 34.783 0.00 0.00 0.00 2.27
149 150 1.806542 ACTGCAACCAATCAACTAGCG 59.193 47.619 0.00 0.00 0.00 4.26
154 155 4.829064 TCAACTACTGCAACCAATCAAC 57.171 40.909 0.00 0.00 0.00 3.18
156 157 5.769662 AGAAATCAACTACTGCAACCAATCA 59.230 36.000 0.00 0.00 0.00 2.57
158 159 5.536161 ACAGAAATCAACTACTGCAACCAAT 59.464 36.000 0.00 0.00 34.25 3.16
160 161 4.460263 ACAGAAATCAACTACTGCAACCA 58.540 39.130 0.00 0.00 34.25 3.67
161 162 5.438761 AACAGAAATCAACTACTGCAACC 57.561 39.130 0.00 0.00 34.25 3.77
168 171 6.590677 GTCCCAGAGTAACAGAAATCAACTAC 59.409 42.308 0.00 0.00 0.00 2.73
174 177 4.932200 CACTGTCCCAGAGTAACAGAAATC 59.068 45.833 8.59 0.00 42.37 2.17
179 182 2.365617 ACACACTGTCCCAGAGTAACAG 59.634 50.000 0.00 0.00 44.68 3.16
182 185 1.070134 GCACACACTGTCCCAGAGTAA 59.930 52.381 0.00 0.00 33.87 2.24
189 192 4.049393 GTGAGCACACACTGTCCC 57.951 61.111 9.58 0.00 45.32 4.46
202 209 5.534207 AAGATCTGAGCCTATTCTGTGAG 57.466 43.478 0.00 0.00 0.00 3.51
208 215 5.465056 GCAGTACAAAGATCTGAGCCTATTC 59.535 44.000 0.00 0.00 0.00 1.75
215 222 5.414360 TGCTAAGCAGTACAAAGATCTGAG 58.586 41.667 0.00 0.00 33.32 3.35
282 294 6.371809 TGAATCGGGCAAAATCTATGTTAC 57.628 37.500 0.00 0.00 0.00 2.50
288 300 4.462483 AGCTTTTGAATCGGGCAAAATCTA 59.538 37.500 10.59 0.00 42.36 1.98
290 302 3.368843 CAGCTTTTGAATCGGGCAAAATC 59.631 43.478 0.00 0.00 42.36 2.17
291 303 3.006752 TCAGCTTTTGAATCGGGCAAAAT 59.993 39.130 0.00 0.00 42.36 1.82
299 311 5.466058 AGATCTGCTATCAGCTTTTGAATCG 59.534 40.000 0.00 0.00 42.97 3.34
303 315 9.650539 GATATAAGATCTGCTATCAGCTTTTGA 57.349 33.333 15.21 0.00 42.97 2.69
305 317 9.656040 CAGATATAAGATCTGCTATCAGCTTTT 57.344 33.333 19.45 3.48 42.97 2.27
308 320 8.592529 TTCAGATATAAGATCTGCTATCAGCT 57.407 34.615 19.45 0.00 43.79 4.24
309 321 9.086336 GTTTCAGATATAAGATCTGCTATCAGC 57.914 37.037 19.45 0.00 43.79 4.26
314 326 9.265901 GCTTTGTTTCAGATATAAGATCTGCTA 57.734 33.333 8.77 0.00 43.79 3.49
315 327 7.228308 GGCTTTGTTTCAGATATAAGATCTGCT 59.772 37.037 8.77 0.00 43.79 4.24
316 328 7.012704 TGGCTTTGTTTCAGATATAAGATCTGC 59.987 37.037 8.77 0.00 43.79 4.26
317 329 8.442632 TGGCTTTGTTTCAGATATAAGATCTG 57.557 34.615 7.53 7.53 45.08 2.90
319 331 9.060347 TCATGGCTTTGTTTCAGATATAAGATC 57.940 33.333 0.00 0.00 0.00 2.75
320 332 8.985315 TCATGGCTTTGTTTCAGATATAAGAT 57.015 30.769 0.00 0.00 0.00 2.40
321 333 8.843262 CATCATGGCTTTGTTTCAGATATAAGA 58.157 33.333 0.00 0.00 0.00 2.10
322 334 8.843262 TCATCATGGCTTTGTTTCAGATATAAG 58.157 33.333 0.00 0.00 0.00 1.73
324 336 7.774625 TGTCATCATGGCTTTGTTTCAGATATA 59.225 33.333 0.00 0.00 0.00 0.86
325 337 6.604396 TGTCATCATGGCTTTGTTTCAGATAT 59.396 34.615 0.00 0.00 0.00 1.63
385 499 1.285641 CGCCCAGAAACACGCAATT 59.714 52.632 0.00 0.00 0.00 2.32
386 500 1.452145 AACGCCCAGAAACACGCAAT 61.452 50.000 0.00 0.00 0.00 3.56
388 502 0.604243 ATAACGCCCAGAAACACGCA 60.604 50.000 0.00 0.00 0.00 5.24
389 503 0.519961 AATAACGCCCAGAAACACGC 59.480 50.000 0.00 0.00 0.00 5.34
390 504 2.981400 AAATAACGCCCAGAAACACG 57.019 45.000 0.00 0.00 0.00 4.49
391 505 4.226761 CAGAAAATAACGCCCAGAAACAC 58.773 43.478 0.00 0.00 0.00 3.32
392 506 3.886505 ACAGAAAATAACGCCCAGAAACA 59.113 39.130 0.00 0.00 0.00 2.83
393 507 4.226761 CACAGAAAATAACGCCCAGAAAC 58.773 43.478 0.00 0.00 0.00 2.78
399 513 2.352323 CCCAACACAGAAAATAACGCCC 60.352 50.000 0.00 0.00 0.00 6.13
400 514 2.924880 GCCCAACACAGAAAATAACGCC 60.925 50.000 0.00 0.00 0.00 5.68
401 515 2.324860 GCCCAACACAGAAAATAACGC 58.675 47.619 0.00 0.00 0.00 4.84
403 517 2.352323 CCGGCCCAACACAGAAAATAAC 60.352 50.000 0.00 0.00 0.00 1.89
404 518 1.889829 CCGGCCCAACACAGAAAATAA 59.110 47.619 0.00 0.00 0.00 1.40
406 520 1.184970 CCCGGCCCAACACAGAAAAT 61.185 55.000 0.00 0.00 0.00 1.82
408 522 2.203422 CCCGGCCCAACACAGAAA 60.203 61.111 0.00 0.00 0.00 2.52
409 523 4.966787 GCCCGGCCCAACACAGAA 62.967 66.667 0.00 0.00 0.00 3.02
413 527 3.980442 TAATCGCCCGGCCCAACAC 62.980 63.158 3.10 0.00 0.00 3.32
414 528 2.559922 ATTAATCGCCCGGCCCAACA 62.560 55.000 3.10 0.00 0.00 3.33
415 529 1.792118 GATTAATCGCCCGGCCCAAC 61.792 60.000 3.10 0.00 0.00 3.77
416 530 1.527380 GATTAATCGCCCGGCCCAA 60.527 57.895 3.10 0.00 0.00 4.12
417 531 2.112297 GATTAATCGCCCGGCCCA 59.888 61.111 3.10 0.00 0.00 5.36
419 533 1.966451 CCTGATTAATCGCCCGGCC 60.966 63.158 10.80 0.00 0.00 6.13
420 534 2.617274 GCCTGATTAATCGCCCGGC 61.617 63.158 16.76 16.76 0.00 6.13
421 535 1.227823 TGCCTGATTAATCGCCCGG 60.228 57.895 10.80 9.15 0.00 5.73
422 536 1.845809 GCTGCCTGATTAATCGCCCG 61.846 60.000 10.80 4.70 0.00 6.13
423 537 0.536006 AGCTGCCTGATTAATCGCCC 60.536 55.000 10.80 2.17 0.00 6.13
425 539 1.942657 TCAAGCTGCCTGATTAATCGC 59.057 47.619 10.80 9.29 0.00 4.58
426 540 4.610007 CGAATCAAGCTGCCTGATTAATCG 60.610 45.833 22.58 18.64 33.05 3.34
427 541 4.274459 ACGAATCAAGCTGCCTGATTAATC 59.726 41.667 22.58 12.26 33.05 1.75
428 542 4.202441 ACGAATCAAGCTGCCTGATTAAT 58.798 39.130 22.58 13.04 33.05 1.40
429 543 3.609853 ACGAATCAAGCTGCCTGATTAA 58.390 40.909 22.58 0.00 33.05 1.40
432 546 1.741706 CAACGAATCAAGCTGCCTGAT 59.258 47.619 7.91 7.91 0.00 2.90
433 547 1.159285 CAACGAATCAAGCTGCCTGA 58.841 50.000 3.03 3.03 0.00 3.86
434 548 1.135859 GTCAACGAATCAAGCTGCCTG 60.136 52.381 0.00 0.00 0.00 4.85
436 550 0.169009 GGTCAACGAATCAAGCTGCC 59.831 55.000 0.00 0.00 0.00 4.85
437 551 3.683581 GGTCAACGAATCAAGCTGC 57.316 52.632 0.00 0.00 0.00 5.25
457 598 5.589855 TGACTTGATTAACATGCCGATTGAT 59.410 36.000 0.00 0.00 0.00 2.57
461 602 3.627577 GGTGACTTGATTAACATGCCGAT 59.372 43.478 0.00 0.00 0.00 4.18
464 605 4.009675 TCTGGTGACTTGATTAACATGCC 58.990 43.478 0.00 0.00 0.00 4.40
477 618 4.323569 TCTCAGTCCTAATCTGGTGACT 57.676 45.455 0.00 0.00 38.56 3.41
491 632 5.477510 ACTTGATGTCTGACAATCTCAGTC 58.522 41.667 15.31 6.48 46.09 3.51
492 633 5.011431 TGACTTGATGTCTGACAATCTCAGT 59.989 40.000 15.31 15.86 46.09 3.41
494 635 5.473066 TGACTTGATGTCTGACAATCTCA 57.527 39.130 15.31 11.24 45.54 3.27
498 639 4.081476 TCCGATGACTTGATGTCTGACAAT 60.081 41.667 15.31 1.43 45.54 2.71
499 640 3.258123 TCCGATGACTTGATGTCTGACAA 59.742 43.478 15.31 0.00 45.54 3.18
500 641 2.825532 TCCGATGACTTGATGTCTGACA 59.174 45.455 13.60 13.60 45.54 3.58
501 642 3.510388 TCCGATGACTTGATGTCTGAC 57.490 47.619 0.00 0.00 45.54 3.51
502 643 4.743057 AATCCGATGACTTGATGTCTGA 57.257 40.909 0.12 0.00 45.54 3.27
503 644 5.836347 TCTAATCCGATGACTTGATGTCTG 58.164 41.667 0.12 0.00 45.54 3.51
504 645 5.508825 GCTCTAATCCGATGACTTGATGTCT 60.509 44.000 0.12 0.00 45.54 3.41
505 646 4.683781 GCTCTAATCCGATGACTTGATGTC 59.316 45.833 0.00 0.00 45.54 3.06
506 647 4.502259 GGCTCTAATCCGATGACTTGATGT 60.502 45.833 0.00 0.00 0.00 3.06
507 648 3.993081 GGCTCTAATCCGATGACTTGATG 59.007 47.826 0.00 0.00 0.00 3.07
508 649 4.264460 GGCTCTAATCCGATGACTTGAT 57.736 45.455 0.00 0.00 0.00 2.57
509 650 3.735237 GGCTCTAATCCGATGACTTGA 57.265 47.619 0.00 0.00 0.00 3.02
531 672 7.700322 TTAGCTCGTGATTTAGATGTGATTC 57.300 36.000 0.00 0.00 0.00 2.52
541 682 4.270084 CGCCTTGAATTAGCTCGTGATTTA 59.730 41.667 0.00 0.00 0.00 1.40
545 686 1.640428 CGCCTTGAATTAGCTCGTGA 58.360 50.000 0.00 0.00 0.00 4.35
558 699 0.465705 TAGCCTGAAGATCCGCCTTG 59.534 55.000 0.00 0.00 0.00 3.61
564 705 4.443621 GTTACTTGGTAGCCTGAAGATCC 58.556 47.826 0.00 0.00 0.00 3.36
566 707 3.118738 CGGTTACTTGGTAGCCTGAAGAT 60.119 47.826 8.48 0.00 37.27 2.40
579 720 1.726853 CAAGAGGGAGCGGTTACTTG 58.273 55.000 0.00 0.00 0.00 3.16
582 723 4.203618 GCAAGAGGGAGCGGTTAC 57.796 61.111 0.00 0.00 0.00 2.50
602 744 0.462937 AAAACTTTTGTTGCCCCGGC 60.463 50.000 0.00 0.00 42.67 6.13
603 745 1.577468 GAAAACTTTTGTTGCCCCGG 58.423 50.000 0.00 0.00 42.67 5.73
604 746 1.577468 GGAAAACTTTTGTTGCCCCG 58.423 50.000 0.00 0.00 42.67 5.73
605 747 1.961793 GGGAAAACTTTTGTTGCCCC 58.038 50.000 8.17 6.16 45.03 5.80
607 749 1.939934 GCAGGGAAAACTTTTGTTGCC 59.060 47.619 0.00 0.00 42.67 4.52
608 750 2.626840 TGCAGGGAAAACTTTTGTTGC 58.373 42.857 0.00 0.40 42.67 4.17
609 751 3.622612 CCTTGCAGGGAAAACTTTTGTTG 59.377 43.478 9.80 0.00 42.67 3.33
610 752 3.517500 TCCTTGCAGGGAAAACTTTTGTT 59.482 39.130 16.40 0.00 39.20 2.83
629 771 6.101734 TCCTCTTGGCATTCACTAATATTCCT 59.898 38.462 0.00 0.00 0.00 3.36
635 777 4.263462 TGTGTCCTCTTGGCATTCACTAAT 60.263 41.667 0.00 0.00 0.00 1.73
638 780 1.421268 TGTGTCCTCTTGGCATTCACT 59.579 47.619 0.00 0.00 0.00 3.41
646 788 4.981806 TTCTTTGTTTGTGTCCTCTTGG 57.018 40.909 0.00 0.00 0.00 3.61
669 811 1.298859 GGCAGATCGAAGGCGTGTTT 61.299 55.000 0.00 0.00 38.98 2.83
670 812 1.741770 GGCAGATCGAAGGCGTGTT 60.742 57.895 0.00 0.00 38.98 3.32
671 813 2.125512 GGCAGATCGAAGGCGTGT 60.126 61.111 0.00 0.00 38.98 4.49
672 814 1.021390 AAAGGCAGATCGAAGGCGTG 61.021 55.000 0.00 0.00 38.98 5.34
673 815 0.321653 AAAAGGCAGATCGAAGGCGT 60.322 50.000 0.00 0.00 38.98 5.68
674 816 1.327764 GTAAAAGGCAGATCGAAGGCG 59.672 52.381 0.00 0.00 39.35 5.52
675 817 1.671328 GGTAAAAGGCAGATCGAAGGC 59.329 52.381 0.00 0.00 0.00 4.35
676 818 2.092914 AGGGTAAAAGGCAGATCGAAGG 60.093 50.000 0.00 0.00 0.00 3.46
687 829 4.234574 GCAAACGATCAAAGGGTAAAAGG 58.765 43.478 0.00 0.00 0.00 3.11
696 838 1.390664 CGCAGCGCAAACGATCAAAG 61.391 55.000 11.47 0.00 43.93 2.77
700 842 3.487202 TCCGCAGCGCAAACGATC 61.487 61.111 11.47 0.00 43.93 3.69
701 843 3.788766 GTCCGCAGCGCAAACGAT 61.789 61.111 11.47 0.00 43.93 3.73
711 853 1.938657 ATCAGTCGAGTGGTCCGCAG 61.939 60.000 19.86 0.00 0.00 5.18
723 865 0.527169 ATGCGCTCACAGATCAGTCG 60.527 55.000 9.73 0.00 0.00 4.18
724 866 1.649664 AATGCGCTCACAGATCAGTC 58.350 50.000 9.73 0.00 0.00 3.51
725 867 2.105006 AAATGCGCTCACAGATCAGT 57.895 45.000 9.73 0.00 0.00 3.41
726 868 2.223203 GGAAAATGCGCTCACAGATCAG 60.223 50.000 9.73 0.00 0.00 2.90
727 869 1.739466 GGAAAATGCGCTCACAGATCA 59.261 47.619 9.73 0.00 0.00 2.92
729 871 2.012673 GAGGAAAATGCGCTCACAGAT 58.987 47.619 9.73 0.00 0.00 2.90
730 872 1.442769 GAGGAAAATGCGCTCACAGA 58.557 50.000 9.73 0.00 0.00 3.41
732 874 0.250684 TGGAGGAAAATGCGCTCACA 60.251 50.000 9.73 0.00 0.00 3.58
733 875 1.064654 GATGGAGGAAAATGCGCTCAC 59.935 52.381 9.73 0.00 0.00 3.51
734 876 1.382522 GATGGAGGAAAATGCGCTCA 58.617 50.000 9.73 0.00 0.00 4.26
735 877 0.665298 GGATGGAGGAAAATGCGCTC 59.335 55.000 9.73 0.00 0.00 5.03
736 878 0.034186 TGGATGGAGGAAAATGCGCT 60.034 50.000 9.73 0.00 0.00 5.92
737 879 0.383231 CTGGATGGAGGAAAATGCGC 59.617 55.000 0.00 0.00 0.00 6.09
738 880 1.402968 CACTGGATGGAGGAAAATGCG 59.597 52.381 0.00 0.00 0.00 4.73
739 881 2.726821 TCACTGGATGGAGGAAAATGC 58.273 47.619 0.00 0.00 0.00 3.56
740 882 4.913335 CATCACTGGATGGAGGAAAATG 57.087 45.455 0.00 0.00 45.84 2.32
750 892 0.467474 ATGCTGGCCATCACTGGATG 60.467 55.000 12.34 0.00 46.37 3.51
771 913 1.404181 CCGATCTGGAGCAAGAAACGA 60.404 52.381 0.00 0.00 42.00 3.85
772 914 1.002366 CCGATCTGGAGCAAGAAACG 58.998 55.000 0.00 0.00 42.00 3.60
773 915 0.729690 GCCGATCTGGAGCAAGAAAC 59.270 55.000 7.64 0.00 42.00 2.78
774 916 0.392998 GGCCGATCTGGAGCAAGAAA 60.393 55.000 7.64 0.00 42.00 2.52
791 933 1.452108 AGCTTTGGTAGATGGCGGC 60.452 57.895 0.00 0.00 0.00 6.53
792 934 1.718757 GCAGCTTTGGTAGATGGCGG 61.719 60.000 0.00 0.00 40.65 6.13
797 939 0.698238 TGTGGGCAGCTTTGGTAGAT 59.302 50.000 0.00 0.00 0.00 1.98
801 943 1.187567 GGATTGTGGGCAGCTTTGGT 61.188 55.000 0.00 0.00 0.00 3.67
802 944 1.186917 TGGATTGTGGGCAGCTTTGG 61.187 55.000 0.00 0.00 0.00 3.28
803 945 0.680618 TTGGATTGTGGGCAGCTTTG 59.319 50.000 0.00 0.00 0.00 2.77
804 946 0.681175 GTTGGATTGTGGGCAGCTTT 59.319 50.000 0.00 0.00 0.00 3.51
805 947 1.187567 GGTTGGATTGTGGGCAGCTT 61.188 55.000 0.00 0.00 0.00 3.74
806 948 1.607467 GGTTGGATTGTGGGCAGCT 60.607 57.895 0.00 0.00 0.00 4.24
808 950 0.533491 CATGGTTGGATTGTGGGCAG 59.467 55.000 0.00 0.00 0.00 4.85
830 979 5.421693 CCAATCCATTAACCATCCTCAACAA 59.578 40.000 0.00 0.00 0.00 2.83
838 987 2.694628 TGCTGCCAATCCATTAACCATC 59.305 45.455 0.00 0.00 0.00 3.51
841 990 2.497273 AGTTGCTGCCAATCCATTAACC 59.503 45.455 0.00 0.00 32.75 2.85
845 994 1.636148 ACAGTTGCTGCCAATCCATT 58.364 45.000 0.00 0.00 34.37 3.16
858 1007 9.626045 GGGAATAAGAAGTCAAAATAACAGTTG 57.374 33.333 0.00 0.00 0.00 3.16
859 1008 9.588096 AGGGAATAAGAAGTCAAAATAACAGTT 57.412 29.630 0.00 0.00 0.00 3.16
860 1009 9.232473 GAGGGAATAAGAAGTCAAAATAACAGT 57.768 33.333 0.00 0.00 0.00 3.55
861 1010 9.454859 AGAGGGAATAAGAAGTCAAAATAACAG 57.545 33.333 0.00 0.00 0.00 3.16
870 1026 8.380742 AGTGATTAAGAGGGAATAAGAAGTCA 57.619 34.615 0.00 0.00 0.00 3.41
875 1031 8.204836 GCAGTTAGTGATTAAGAGGGAATAAGA 58.795 37.037 0.00 0.00 0.00 2.10
876 1032 7.987458 TGCAGTTAGTGATTAAGAGGGAATAAG 59.013 37.037 0.00 0.00 0.00 1.73
893 1050 3.056035 GGCTACTTACCACTGCAGTTAGT 60.056 47.826 18.94 19.65 0.00 2.24
894 1051 3.522553 GGCTACTTACCACTGCAGTTAG 58.477 50.000 18.94 15.95 0.00 2.34
895 1052 2.235402 GGGCTACTTACCACTGCAGTTA 59.765 50.000 18.94 5.24 0.00 2.24
896 1053 1.003233 GGGCTACTTACCACTGCAGTT 59.997 52.381 18.94 6.43 0.00 3.16
898 1055 0.905357 AGGGCTACTTACCACTGCAG 59.095 55.000 13.48 13.48 0.00 4.41
899 1056 1.358152 AAGGGCTACTTACCACTGCA 58.642 50.000 0.00 0.00 37.74 4.41
900 1057 2.357075 GAAAGGGCTACTTACCACTGC 58.643 52.381 0.00 0.00 38.85 4.40
901 1058 2.355818 GGGAAAGGGCTACTTACCACTG 60.356 54.545 0.00 0.00 38.85 3.66
902 1059 1.914108 GGGAAAGGGCTACTTACCACT 59.086 52.381 0.00 0.00 38.85 4.00
903 1060 1.914108 AGGGAAAGGGCTACTTACCAC 59.086 52.381 13.51 4.32 38.85 4.16
906 1063 1.560146 AGCAGGGAAAGGGCTACTTAC 59.440 52.381 0.00 0.00 38.85 2.34
908 1065 1.966845 TAGCAGGGAAAGGGCTACTT 58.033 50.000 0.00 0.00 42.52 2.24
909 1066 3.732159 TAGCAGGGAAAGGGCTACT 57.268 52.632 0.00 0.00 39.01 2.57
911 1068 0.324923 TCGTAGCAGGGAAAGGGCTA 60.325 55.000 0.00 0.00 39.01 3.93
912 1069 0.983378 ATCGTAGCAGGGAAAGGGCT 60.983 55.000 0.00 0.00 41.51 5.19
913 1070 0.756903 TATCGTAGCAGGGAAAGGGC 59.243 55.000 0.00 0.00 0.00 5.19
914 1071 1.269621 CGTATCGTAGCAGGGAAAGGG 60.270 57.143 0.00 0.00 0.00 3.95
915 1072 1.868519 GCGTATCGTAGCAGGGAAAGG 60.869 57.143 0.00 0.00 0.00 3.11
916 1073 1.488527 GCGTATCGTAGCAGGGAAAG 58.511 55.000 0.00 0.00 0.00 2.62
919 1076 0.754217 AAGGCGTATCGTAGCAGGGA 60.754 55.000 0.00 0.00 34.54 4.20
920 1077 0.597637 CAAGGCGTATCGTAGCAGGG 60.598 60.000 0.00 0.00 34.54 4.45
921 1078 1.215655 GCAAGGCGTATCGTAGCAGG 61.216 60.000 0.00 0.00 34.54 4.85
922 1079 0.527600 TGCAAGGCGTATCGTAGCAG 60.528 55.000 0.00 0.00 34.54 4.24
923 1080 0.108567 TTGCAAGGCGTATCGTAGCA 60.109 50.000 0.00 0.00 34.54 3.49
924 1081 0.300789 GTTGCAAGGCGTATCGTAGC 59.699 55.000 0.00 0.00 0.00 3.58
926 3232 1.352114 GTGTTGCAAGGCGTATCGTA 58.648 50.000 0.00 0.00 0.00 3.43
928 3234 1.058748 CGTGTTGCAAGGCGTATCG 59.941 57.895 0.00 0.00 0.00 2.92
930 3236 2.867472 GCGTGTTGCAAGGCGTAT 59.133 55.556 19.35 0.00 45.45 3.06
934 3240 2.427410 CTTCGCGTGTTGCAAGGC 60.427 61.111 5.77 2.89 46.97 4.35
935 3241 1.369209 CACTTCGCGTGTTGCAAGG 60.369 57.895 5.77 0.00 46.97 3.61
948 3255 6.531594 GGCCAAGATTTTTATAGCAACACTTC 59.468 38.462 0.00 0.00 0.00 3.01
951 3258 5.719173 TGGCCAAGATTTTTATAGCAACAC 58.281 37.500 0.61 0.00 0.00 3.32
955 3262 4.499526 CGCATGGCCAAGATTTTTATAGCA 60.500 41.667 10.96 0.00 0.00 3.49
956 3263 3.983344 CGCATGGCCAAGATTTTTATAGC 59.017 43.478 10.96 0.00 0.00 2.97
965 3273 0.966875 TTCAAGCGCATGGCCAAGAT 60.967 50.000 10.96 0.00 45.17 2.40
966 3274 1.603171 TTCAAGCGCATGGCCAAGA 60.603 52.632 10.96 0.00 45.17 3.02
977 3285 4.389576 GGGTGCAGCGTTCAAGCG 62.390 66.667 10.24 0.00 43.00 4.68
983 3291 1.304381 ATGGATTGGGTGCAGCGTT 60.304 52.632 10.24 0.00 0.00 4.84
1172 3489 0.386858 CGAGACGACCGTGACATTGT 60.387 55.000 0.00 0.00 0.00 2.71
1359 3676 4.719369 GCCGACGAGAGGTTGCGT 62.719 66.667 0.00 0.00 44.33 5.24
1606 3923 2.577059 GGTGCCGATGAACTCCGA 59.423 61.111 0.00 0.00 0.00 4.55
2129 4483 7.662604 AAAGATTGCAACCAAATTGAAGATC 57.337 32.000 0.00 0.00 41.23 2.75
2149 4514 9.273016 CAAGAACATAGTTAGGACAAGAAAAGA 57.727 33.333 0.00 0.00 0.00 2.52
2150 4515 9.273016 TCAAGAACATAGTTAGGACAAGAAAAG 57.727 33.333 0.00 0.00 0.00 2.27
2221 4866 5.278957 GCTCCATTTTTGGACTTCAGCTTTA 60.279 40.000 0.00 0.00 33.77 1.85
2228 4873 2.560105 AGCTGCTCCATTTTTGGACTTC 59.440 45.455 0.00 0.00 33.77 3.01
2232 4879 1.259609 CCAGCTGCTCCATTTTTGGA 58.740 50.000 8.66 0.00 36.40 3.53
2316 4981 4.806247 GGATCTAGTGACCAAATCGAAGTG 59.194 45.833 0.00 0.00 0.00 3.16
2344 5009 5.417580 TGGATGGTATAAAGTGGTGAAAAGC 59.582 40.000 0.00 0.00 0.00 3.51
2362 5027 3.935315 AGTATTGCGATGAGATGGATGG 58.065 45.455 0.00 0.00 0.00 3.51
2382 5047 4.655762 TCTACTGGTAGTGCAGCATAAG 57.344 45.455 0.00 0.00 33.26 1.73
2383 5048 4.709886 TCTTCTACTGGTAGTGCAGCATAA 59.290 41.667 0.00 0.00 33.26 1.90
2388 5056 6.219473 CCATTATCTTCTACTGGTAGTGCAG 58.781 44.000 7.52 0.00 34.84 4.41
2396 5064 4.137543 GGTTGCCCATTATCTTCTACTGG 58.862 47.826 0.00 0.00 0.00 4.00
2414 5085 2.330231 ATCGTTGCATTTGACGGTTG 57.670 45.000 8.66 0.00 39.59 3.77
2436 5107 2.483877 GACATCGGCAAGTGAAACATCA 59.516 45.455 0.00 0.00 41.43 3.07
2504 5183 2.203379 AGCTGCCATGCACACACA 60.203 55.556 0.00 0.00 33.79 3.72
2624 5303 3.925116 TCGATGTCGCATTGGTACACAAT 60.925 43.478 0.00 0.00 43.47 2.71
2746 5425 4.130118 GGATATCGCAGTTTTGGATGACT 58.870 43.478 0.00 0.00 0.00 3.41
2964 5643 4.096003 CGGCCGGGGTGATTGAGT 62.096 66.667 20.10 0.00 0.00 3.41
3004 5683 0.880278 ACAACGTGCTGAGTGCGAAT 60.880 50.000 0.00 0.00 46.63 3.34
3098 5777 2.357517 CTCCACGGTGGACAGTGC 60.358 66.667 25.53 0.00 42.67 4.40
3207 5886 1.070758 GACCACAGACACCATGACACT 59.929 52.381 0.00 0.00 0.00 3.55
3233 5913 8.141268 TGATCTGGTTCCATTTTTCAAGTTTAC 58.859 33.333 0.00 0.00 0.00 2.01
3274 5954 5.652452 GCTTCCACCTTATTGTTACCAATCT 59.348 40.000 0.00 0.00 41.50 2.40
3497 6177 5.573282 CCCATTACTATCTATTTCTGCGACG 59.427 44.000 0.00 0.00 0.00 5.12
3537 6218 2.033194 CCCTCGGTTCTTGTTCGGC 61.033 63.158 0.00 0.00 0.00 5.54
3784 6474 5.806654 AACCATTGTTATTGCAGGTCTTT 57.193 34.783 0.00 0.00 31.36 2.52
3846 6536 1.216427 AGCCCCCTCATTCAGATTTCC 59.784 52.381 0.00 0.00 0.00 3.13
4100 9487 3.133362 AGGCATTTTGGCACATAATCCAG 59.867 43.478 3.81 0.00 46.46 3.86
4119 9515 4.499188 GGACAAACAAACTCACCTTTAGGC 60.499 45.833 0.00 0.00 39.32 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.