Multiple sequence alignment - TraesCS6B01G375900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G375900 chr6B 100.000 4151 0 0 1 4151 650806476 650802326 0.000000e+00 7666.0
1 TraesCS6B01G375900 chr6B 86.332 1434 138 33 962 2387 650924906 650923523 0.000000e+00 1509.0
2 TraesCS6B01G375900 chr6B 89.605 1039 94 10 2394 3423 650923463 650922430 0.000000e+00 1308.0
3 TraesCS6B01G375900 chr6B 84.576 389 57 3 3753 4139 649925954 649926341 2.340000e-102 383.0
4 TraesCS6B01G375900 chr6D 95.392 2930 76 18 815 3740 431210756 431207882 0.000000e+00 4608.0
5 TraesCS6B01G375900 chr6D 88.056 1080 99 17 962 2037 431269986 431268933 0.000000e+00 1253.0
6 TraesCS6B01G375900 chr6D 88.987 1017 100 10 2413 3423 431268242 431267232 0.000000e+00 1247.0
7 TraesCS6B01G375900 chr6D 82.222 225 35 3 1583 1805 3040746 3040525 5.480000e-44 189.0
8 TraesCS6B01G375900 chr6D 91.358 81 7 0 1086 1166 3040951 3040871 1.220000e-20 111.0
9 TraesCS6B01G375900 chr6A 94.049 1546 53 20 881 2399 577881671 577880138 0.000000e+00 2309.0
10 TraesCS6B01G375900 chr6A 85.131 1493 139 49 928 2390 578039635 578038196 0.000000e+00 1450.0
11 TraesCS6B01G375900 chr6A 95.383 823 36 2 2394 3215 577880112 577879291 0.000000e+00 1308.0
12 TraesCS6B01G375900 chr6A 89.189 1036 103 9 2394 3423 578038157 578037125 0.000000e+00 1284.0
13 TraesCS6B01G375900 chr6A 90.365 384 27 3 3280 3654 577875299 577874917 2.880000e-136 496.0
14 TraesCS6B01G375900 chr6A 95.556 90 4 0 3651 3740 577851729 577851818 1.200000e-30 145.0
15 TraesCS6B01G375900 chr6A 93.333 90 6 0 3651 3740 577874941 577874852 2.600000e-27 134.0
16 TraesCS6B01G375900 chr6A 92.727 55 3 1 3598 3651 577851696 577851750 1.240000e-10 78.7
17 TraesCS6B01G375900 chr6A 90.385 52 4 1 3213 3264 577875329 577875279 2.680000e-07 67.6
18 TraesCS6B01G375900 chr3D 86.750 400 49 3 3752 4150 98565502 98565106 3.810000e-120 442.0
19 TraesCS6B01G375900 chr3D 83.920 398 61 3 3754 4150 563419613 563420008 1.090000e-100 377.0
20 TraesCS6B01G375900 chr3D 78.304 507 69 29 1 477 380901075 380901570 5.250000e-74 289.0
21 TraesCS6B01G375900 chr4D 86.432 398 52 2 3754 4150 440031260 440031656 6.370000e-118 435.0
22 TraesCS6B01G375900 chr7B 86.548 394 51 2 3752 4144 361571067 361571459 2.290000e-117 433.0
23 TraesCS6B01G375900 chrUn 86.305 387 52 1 3753 4139 97329382 97329767 1.780000e-113 420.0
24 TraesCS6B01G375900 chrUn 97.619 42 1 0 1451 1492 40196085 40196126 5.760000e-09 73.1
25 TraesCS6B01G375900 chr5A 85.287 401 55 3 3753 4150 41460572 41460173 1.070000e-110 411.0
26 TraesCS6B01G375900 chr1D 85.250 400 57 2 3752 4150 4431963 4432361 1.070000e-110 411.0
27 TraesCS6B01G375900 chr5D 84.788 401 59 2 3751 4150 537735545 537735944 6.460000e-108 401.0
28 TraesCS6B01G375900 chr2A 88.803 259 21 2 1086 1336 474320176 474319918 1.120000e-80 311.0
29 TraesCS6B01G375900 chr2A 97.297 37 1 0 1451 1487 474319917 474319881 3.460000e-06 63.9
30 TraesCS6B01G375900 chr2D 81.530 379 52 13 420 792 648648402 648648036 3.140000e-76 296.0
31 TraesCS6B01G375900 chr7A 72.923 325 66 19 443 759 139131226 139131536 4.420000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G375900 chr6B 650802326 650806476 4150 True 7666.00 7666 100.0000 1 4151 1 chr6B.!!$R1 4150
1 TraesCS6B01G375900 chr6B 650922430 650924906 2476 True 1408.50 1509 87.9685 962 3423 2 chr6B.!!$R2 2461
2 TraesCS6B01G375900 chr6D 431207882 431210756 2874 True 4608.00 4608 95.3920 815 3740 1 chr6D.!!$R1 2925
3 TraesCS6B01G375900 chr6D 431267232 431269986 2754 True 1250.00 1253 88.5215 962 3423 2 chr6D.!!$R3 2461
4 TraesCS6B01G375900 chr6A 578037125 578039635 2510 True 1367.00 1450 87.1600 928 3423 2 chr6A.!!$R2 2495
5 TraesCS6B01G375900 chr6A 577874852 577881671 6819 True 862.92 2309 92.7030 881 3740 5 chr6A.!!$R1 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 629 0.395173 GGGTGGCCCATGTACGAAAT 60.395 55.0 0.00 0.0 44.65 2.17 F
1981 1994 0.109272 GAAGACAGTCATCGTCGGCA 60.109 55.0 2.66 0.0 38.46 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2051 1.067706 TGCATGGGCTTTCATTTCGTG 60.068 47.619 0.0 0.0 41.91 4.35 R
3913 8287 0.038526 GCCACGACGAAGAAGGAAGA 60.039 55.000 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 7.979115 TTCAAAATGTGTTTCCTTAAACTCG 57.021 32.000 3.01 0.00 44.44 4.18
110 111 7.090953 TCAAAATGTGTTTCCTTAAACTCGT 57.909 32.000 3.01 0.00 44.44 4.18
111 112 8.211116 TCAAAATGTGTTTCCTTAAACTCGTA 57.789 30.769 3.01 0.00 44.44 3.43
112 113 8.124199 TCAAAATGTGTTTCCTTAAACTCGTAC 58.876 33.333 3.01 0.00 44.44 3.67
113 114 7.556733 AAATGTGTTTCCTTAAACTCGTACA 57.443 32.000 0.00 0.00 44.44 2.90
114 115 7.739498 AATGTGTTTCCTTAAACTCGTACAT 57.261 32.000 0.00 1.99 44.44 2.29
115 116 7.739498 ATGTGTTTCCTTAAACTCGTACATT 57.261 32.000 0.00 0.00 44.44 2.71
116 117 8.836268 ATGTGTTTCCTTAAACTCGTACATTA 57.164 30.769 0.00 0.00 44.44 1.90
117 118 8.836268 TGTGTTTCCTTAAACTCGTACATTAT 57.164 30.769 0.00 0.00 44.44 1.28
118 119 9.275398 TGTGTTTCCTTAAACTCGTACATTATT 57.725 29.630 0.00 0.00 44.44 1.40
220 221 3.518634 TGGAACAACTTTGGAAAGCAC 57.481 42.857 0.00 0.00 39.63 4.40
221 222 2.828520 TGGAACAACTTTGGAAAGCACA 59.171 40.909 0.00 0.00 39.63 4.57
222 223 3.259374 TGGAACAACTTTGGAAAGCACAA 59.741 39.130 0.00 0.00 39.63 3.33
223 224 4.249661 GGAACAACTTTGGAAAGCACAAA 58.750 39.130 0.00 0.00 39.63 2.83
278 279 6.826893 ATGTTCTGGACATTTTTCAAAACG 57.173 33.333 0.00 0.00 46.80 3.60
279 280 5.105752 TGTTCTGGACATTTTTCAAAACGG 58.894 37.500 0.00 0.00 32.00 4.44
280 281 5.105716 TGTTCTGGACATTTTTCAAAACGGA 60.106 36.000 0.00 0.00 32.00 4.69
281 282 5.584253 TCTGGACATTTTTCAAAACGGAA 57.416 34.783 0.00 0.00 0.00 4.30
282 283 6.155475 TCTGGACATTTTTCAAAACGGAAT 57.845 33.333 0.00 0.00 0.00 3.01
283 284 7.278461 TCTGGACATTTTTCAAAACGGAATA 57.722 32.000 0.00 0.00 0.00 1.75
284 285 7.891561 TCTGGACATTTTTCAAAACGGAATAT 58.108 30.769 0.00 0.00 0.00 1.28
285 286 9.015367 TCTGGACATTTTTCAAAACGGAATATA 57.985 29.630 0.00 0.00 0.00 0.86
286 287 9.801873 CTGGACATTTTTCAAAACGGAATATAT 57.198 29.630 0.00 0.00 0.00 0.86
390 391 8.893219 AAAAGGGAGAAAGAAAAATAAGCTTG 57.107 30.769 9.86 0.00 0.00 4.01
391 392 7.839680 AAGGGAGAAAGAAAAATAAGCTTGA 57.160 32.000 9.86 0.00 0.00 3.02
392 393 7.839680 AGGGAGAAAGAAAAATAAGCTTGAA 57.160 32.000 9.86 0.00 0.00 2.69
393 394 8.250143 AGGGAGAAAGAAAAATAAGCTTGAAA 57.750 30.769 9.86 0.00 0.00 2.69
394 395 8.363390 AGGGAGAAAGAAAAATAAGCTTGAAAG 58.637 33.333 9.86 0.00 0.00 2.62
395 396 7.600375 GGGAGAAAGAAAAATAAGCTTGAAAGG 59.400 37.037 9.86 0.00 0.00 3.11
396 397 7.600375 GGAGAAAGAAAAATAAGCTTGAAAGGG 59.400 37.037 9.86 0.00 0.00 3.95
397 398 8.250143 AGAAAGAAAAATAAGCTTGAAAGGGA 57.750 30.769 9.86 0.00 0.00 4.20
398 399 8.704668 AGAAAGAAAAATAAGCTTGAAAGGGAA 58.295 29.630 9.86 0.00 0.00 3.97
399 400 9.325198 GAAAGAAAAATAAGCTTGAAAGGGAAA 57.675 29.630 9.86 0.00 0.00 3.13
400 401 9.679661 AAAGAAAAATAAGCTTGAAAGGGAAAA 57.320 25.926 9.86 0.00 0.00 2.29
401 402 9.679661 AAGAAAAATAAGCTTGAAAGGGAAAAA 57.320 25.926 9.86 0.00 0.00 1.94
402 403 9.330063 AGAAAAATAAGCTTGAAAGGGAAAAAG 57.670 29.630 9.86 0.00 0.00 2.27
403 404 9.325198 GAAAAATAAGCTTGAAAGGGAAAAAGA 57.675 29.630 9.86 0.00 0.00 2.52
404 405 8.662781 AAAATAAGCTTGAAAGGGAAAAAGAC 57.337 30.769 9.86 0.00 0.00 3.01
405 406 6.976934 ATAAGCTTGAAAGGGAAAAAGACA 57.023 33.333 9.86 0.00 0.00 3.41
406 407 5.675684 AAGCTTGAAAGGGAAAAAGACAA 57.324 34.783 0.00 0.00 0.00 3.18
407 408 5.675684 AGCTTGAAAGGGAAAAAGACAAA 57.324 34.783 0.00 0.00 0.00 2.83
408 409 6.048732 AGCTTGAAAGGGAAAAAGACAAAA 57.951 33.333 0.00 0.00 0.00 2.44
409 410 6.653020 AGCTTGAAAGGGAAAAAGACAAAAT 58.347 32.000 0.00 0.00 0.00 1.82
410 411 7.791029 AGCTTGAAAGGGAAAAAGACAAAATA 58.209 30.769 0.00 0.00 0.00 1.40
411 412 8.264347 AGCTTGAAAGGGAAAAAGACAAAATAA 58.736 29.630 0.00 0.00 0.00 1.40
412 413 8.888716 GCTTGAAAGGGAAAAAGACAAAATAAA 58.111 29.630 0.00 0.00 0.00 1.40
414 415 9.726438 TTGAAAGGGAAAAAGACAAAATAAACA 57.274 25.926 0.00 0.00 0.00 2.83
415 416 9.726438 TGAAAGGGAAAAAGACAAAATAAACAA 57.274 25.926 0.00 0.00 0.00 2.83
417 418 9.952030 AAAGGGAAAAAGACAAAATAAACAAGA 57.048 25.926 0.00 0.00 0.00 3.02
418 419 9.952030 AAGGGAAAAAGACAAAATAAACAAGAA 57.048 25.926 0.00 0.00 0.00 2.52
419 420 9.952030 AGGGAAAAAGACAAAATAAACAAGAAA 57.048 25.926 0.00 0.00 0.00 2.52
437 438 9.591792 AACAAGAAAGAAAAAGAGGAAGAAATG 57.408 29.630 0.00 0.00 0.00 2.32
438 439 8.971073 ACAAGAAAGAAAAAGAGGAAGAAATGA 58.029 29.630 0.00 0.00 0.00 2.57
439 440 9.807649 CAAGAAAGAAAAAGAGGAAGAAATGAA 57.192 29.630 0.00 0.00 0.00 2.57
491 492 2.882927 AAAAAGGAAAACGGTCCAGC 57.117 45.000 5.05 0.00 40.48 4.85
492 493 1.037493 AAAAGGAAAACGGTCCAGCC 58.963 50.000 5.05 0.00 40.48 4.85
493 494 0.826256 AAAGGAAAACGGTCCAGCCC 60.826 55.000 5.05 0.00 40.48 5.19
494 495 2.675423 GGAAAACGGTCCAGCCCC 60.675 66.667 0.00 0.00 37.65 5.80
500 501 3.361977 CGGTCCAGCCCCGTTTTG 61.362 66.667 0.00 0.00 40.59 2.44
501 502 2.989253 GGTCCAGCCCCGTTTTGG 60.989 66.667 0.00 0.00 37.55 3.28
507 508 4.678743 GCCCCGTTTTGGCTCCCT 62.679 66.667 0.00 0.00 45.70 4.20
508 509 2.676471 CCCCGTTTTGGCTCCCTG 60.676 66.667 0.00 0.00 35.87 4.45
509 510 2.115266 CCCGTTTTGGCTCCCTGT 59.885 61.111 0.00 0.00 35.87 4.00
510 511 2.268076 CCCGTTTTGGCTCCCTGTG 61.268 63.158 0.00 0.00 35.87 3.66
511 512 2.644992 CGTTTTGGCTCCCTGTGC 59.355 61.111 0.00 0.00 0.00 4.57
512 513 2.644992 GTTTTGGCTCCCTGTGCG 59.355 61.111 0.00 0.00 0.00 5.34
513 514 1.896660 GTTTTGGCTCCCTGTGCGA 60.897 57.895 0.00 0.00 0.00 5.10
514 515 1.152860 TTTTGGCTCCCTGTGCGAA 60.153 52.632 0.00 0.00 0.00 4.70
515 516 0.539438 TTTTGGCTCCCTGTGCGAAT 60.539 50.000 0.00 0.00 0.00 3.34
516 517 0.539438 TTTGGCTCCCTGTGCGAATT 60.539 50.000 0.00 0.00 0.00 2.17
517 518 0.539438 TTGGCTCCCTGTGCGAATTT 60.539 50.000 0.00 0.00 0.00 1.82
518 519 1.243342 TGGCTCCCTGTGCGAATTTG 61.243 55.000 0.00 0.00 0.00 2.32
519 520 1.153958 GCTCCCTGTGCGAATTTGC 60.154 57.895 10.99 10.99 0.00 3.68
520 521 1.865788 GCTCCCTGTGCGAATTTGCA 61.866 55.000 16.65 16.65 43.95 4.08
531 532 5.983790 TGCGAATTTGCAACTATTTAACG 57.016 34.783 18.23 0.00 43.02 3.18
532 533 4.322274 TGCGAATTTGCAACTATTTAACGC 59.678 37.500 18.23 15.82 43.02 4.84
533 534 4.557301 GCGAATTTGCAACTATTTAACGCT 59.443 37.500 13.04 0.00 38.51 5.07
534 535 5.496969 GCGAATTTGCAACTATTTAACGCTG 60.497 40.000 13.04 0.00 38.51 5.18
535 536 5.567534 CGAATTTGCAACTATTTAACGCTGT 59.432 36.000 0.00 0.00 0.00 4.40
536 537 6.451054 CGAATTTGCAACTATTTAACGCTGTG 60.451 38.462 0.00 0.00 0.00 3.66
537 538 4.822036 TTGCAACTATTTAACGCTGTGT 57.178 36.364 0.00 0.00 0.00 3.72
538 539 4.140518 TGCAACTATTTAACGCTGTGTG 57.859 40.909 0.00 0.00 0.00 3.82
539 540 2.908626 GCAACTATTTAACGCTGTGTGC 59.091 45.455 0.00 0.00 38.57 4.57
540 541 3.608241 GCAACTATTTAACGCTGTGTGCA 60.608 43.478 0.00 0.00 43.06 4.57
541 542 4.532276 CAACTATTTAACGCTGTGTGCAA 58.468 39.130 0.00 0.00 43.06 4.08
542 543 5.153513 CAACTATTTAACGCTGTGTGCAAT 58.846 37.500 0.00 0.00 43.06 3.56
543 544 6.310960 CAACTATTTAACGCTGTGTGCAATA 58.689 36.000 0.00 0.57 43.06 1.90
544 545 6.489127 ACTATTTAACGCTGTGTGCAATAA 57.511 33.333 0.00 0.00 43.06 1.40
545 546 6.904498 ACTATTTAACGCTGTGTGCAATAAA 58.096 32.000 0.00 0.00 43.06 1.40
546 547 7.535139 ACTATTTAACGCTGTGTGCAATAAAT 58.465 30.769 11.35 11.35 41.14 1.40
547 548 8.670135 ACTATTTAACGCTGTGTGCAATAAATA 58.330 29.630 12.06 12.06 39.98 1.40
548 549 9.663904 CTATTTAACGCTGTGTGCAATAAATAT 57.336 29.630 12.64 0.00 40.05 1.28
549 550 8.925161 ATTTAACGCTGTGTGCAATAAATATT 57.075 26.923 6.87 0.00 38.82 1.28
550 551 7.733046 TTAACGCTGTGTGCAATAAATATTG 57.267 32.000 8.48 8.48 44.44 1.90
551 552 5.309323 ACGCTGTGTGCAATAAATATTGT 57.691 34.783 13.18 0.00 43.72 2.71
552 553 5.708948 ACGCTGTGTGCAATAAATATTGTT 58.291 33.333 13.18 0.00 43.72 2.83
553 554 6.155827 ACGCTGTGTGCAATAAATATTGTTT 58.844 32.000 13.18 0.00 43.72 2.83
554 555 6.644592 ACGCTGTGTGCAATAAATATTGTTTT 59.355 30.769 13.18 0.00 43.72 2.43
555 556 7.170658 ACGCTGTGTGCAATAAATATTGTTTTT 59.829 29.630 13.18 0.00 43.72 1.94
572 573 2.666272 TTTTCCCACCTGCATGTACA 57.334 45.000 0.00 0.00 0.00 2.90
573 574 2.897271 TTTCCCACCTGCATGTACAT 57.103 45.000 1.41 1.41 0.00 2.29
574 575 2.127271 TTCCCACCTGCATGTACATG 57.873 50.000 28.07 28.07 41.60 3.21
575 576 1.284313 TCCCACCTGCATGTACATGA 58.716 50.000 34.65 20.00 41.20 3.07
576 577 1.632920 TCCCACCTGCATGTACATGAA 59.367 47.619 34.65 25.92 41.20 2.57
577 578 2.040947 TCCCACCTGCATGTACATGAAA 59.959 45.455 34.65 21.76 41.20 2.69
578 579 2.824936 CCCACCTGCATGTACATGAAAA 59.175 45.455 34.65 19.55 41.20 2.29
579 580 3.448301 CCCACCTGCATGTACATGAAAAT 59.552 43.478 34.65 15.53 41.20 1.82
580 581 4.644234 CCCACCTGCATGTACATGAAAATA 59.356 41.667 34.65 15.68 41.20 1.40
581 582 5.126869 CCCACCTGCATGTACATGAAAATAA 59.873 40.000 34.65 13.70 41.20 1.40
582 583 6.183360 CCCACCTGCATGTACATGAAAATAAT 60.183 38.462 34.65 12.83 41.20 1.28
583 584 7.267128 CCACCTGCATGTACATGAAAATAATT 58.733 34.615 34.65 10.35 41.20 1.40
584 585 8.412456 CCACCTGCATGTACATGAAAATAATTA 58.588 33.333 34.65 10.66 41.20 1.40
585 586 9.454585 CACCTGCATGTACATGAAAATAATTAG 57.545 33.333 34.65 13.13 41.20 1.73
586 587 8.632679 ACCTGCATGTACATGAAAATAATTAGG 58.367 33.333 34.65 22.16 41.20 2.69
587 588 8.632679 CCTGCATGTACATGAAAATAATTAGGT 58.367 33.333 34.65 0.00 41.20 3.08
588 589 9.454585 CTGCATGTACATGAAAATAATTAGGTG 57.545 33.333 34.65 8.26 41.20 4.00
589 590 8.412456 TGCATGTACATGAAAATAATTAGGTGG 58.588 33.333 34.65 6.75 41.20 4.61
590 591 7.382218 GCATGTACATGAAAATAATTAGGTGGC 59.618 37.037 34.65 12.59 41.20 5.01
591 592 8.632679 CATGTACATGAAAATAATTAGGTGGCT 58.367 33.333 28.41 0.00 41.20 4.75
592 593 8.588290 TGTACATGAAAATAATTAGGTGGCTT 57.412 30.769 0.00 0.00 0.00 4.35
593 594 9.030452 TGTACATGAAAATAATTAGGTGGCTTT 57.970 29.630 0.00 0.00 0.00 3.51
594 595 9.301153 GTACATGAAAATAATTAGGTGGCTTTG 57.699 33.333 0.00 0.00 0.00 2.77
595 596 6.818142 ACATGAAAATAATTAGGTGGCTTTGC 59.182 34.615 0.00 0.00 0.00 3.68
596 597 6.603940 TGAAAATAATTAGGTGGCTTTGCT 57.396 33.333 0.00 0.00 0.00 3.91
597 598 6.397272 TGAAAATAATTAGGTGGCTTTGCTG 58.603 36.000 0.00 0.00 0.00 4.41
598 599 5.343307 AAATAATTAGGTGGCTTTGCTGG 57.657 39.130 0.00 0.00 0.00 4.85
599 600 1.560505 AATTAGGTGGCTTTGCTGGG 58.439 50.000 0.00 0.00 0.00 4.45
600 601 0.972471 ATTAGGTGGCTTTGCTGGGC 60.972 55.000 0.00 0.00 0.00 5.36
605 606 3.994853 GGCTTTGCTGGGCCACAC 61.995 66.667 0.00 0.00 46.84 3.82
606 607 2.914097 GCTTTGCTGGGCCACACT 60.914 61.111 0.00 0.00 0.00 3.55
607 608 2.501602 GCTTTGCTGGGCCACACTT 61.502 57.895 0.00 0.00 0.00 3.16
608 609 1.662044 CTTTGCTGGGCCACACTTC 59.338 57.895 0.00 0.00 0.00 3.01
609 610 2.133742 CTTTGCTGGGCCACACTTCG 62.134 60.000 0.00 0.00 0.00 3.79
610 611 4.641645 TGCTGGGCCACACTTCGG 62.642 66.667 0.00 0.00 0.00 4.30
612 613 3.953775 CTGGGCCACACTTCGGGT 61.954 66.667 0.00 0.00 0.00 5.28
620 621 2.751436 CACTTCGGGTGGCCCATG 60.751 66.667 0.00 0.00 45.83 3.66
621 622 3.256960 ACTTCGGGTGGCCCATGT 61.257 61.111 0.00 0.00 45.83 3.21
622 623 1.921346 ACTTCGGGTGGCCCATGTA 60.921 57.895 0.00 0.00 45.83 2.29
623 624 1.451387 CTTCGGGTGGCCCATGTAC 60.451 63.158 0.00 0.00 45.83 2.90
624 625 3.318006 TTCGGGTGGCCCATGTACG 62.318 63.158 0.00 0.00 45.83 3.67
625 626 3.776781 CGGGTGGCCCATGTACGA 61.777 66.667 0.00 0.00 45.83 3.43
626 627 2.672295 GGGTGGCCCATGTACGAA 59.328 61.111 0.00 0.00 44.65 3.85
627 628 1.001887 GGGTGGCCCATGTACGAAA 60.002 57.895 0.00 0.00 44.65 3.46
628 629 0.395173 GGGTGGCCCATGTACGAAAT 60.395 55.000 0.00 0.00 44.65 2.17
629 630 1.470051 GGTGGCCCATGTACGAAATT 58.530 50.000 0.00 0.00 0.00 1.82
630 631 1.404035 GGTGGCCCATGTACGAAATTC 59.596 52.381 0.00 0.00 0.00 2.17
631 632 2.365582 GTGGCCCATGTACGAAATTCT 58.634 47.619 0.00 0.00 0.00 2.40
632 633 2.097466 GTGGCCCATGTACGAAATTCTG 59.903 50.000 0.00 0.00 0.00 3.02
633 634 1.676006 GGCCCATGTACGAAATTCTGG 59.324 52.381 0.00 0.00 0.00 3.86
634 635 1.065551 GCCCATGTACGAAATTCTGGC 59.934 52.381 0.00 0.00 0.00 4.85
635 636 2.643551 CCCATGTACGAAATTCTGGCT 58.356 47.619 0.00 0.00 0.00 4.75
636 637 3.016736 CCCATGTACGAAATTCTGGCTT 58.983 45.455 0.00 0.00 0.00 4.35
637 638 3.443681 CCCATGTACGAAATTCTGGCTTT 59.556 43.478 0.00 0.00 0.00 3.51
638 639 4.082245 CCCATGTACGAAATTCTGGCTTTT 60.082 41.667 0.00 0.00 0.00 2.27
639 640 5.469479 CCATGTACGAAATTCTGGCTTTTT 58.531 37.500 0.00 0.00 0.00 1.94
663 664 8.543862 TTTTCTTTTCTAATAGACGAAGGGAC 57.456 34.615 10.72 0.00 0.00 4.46
664 665 6.845758 TCTTTTCTAATAGACGAAGGGACA 57.154 37.500 10.72 0.00 0.00 4.02
665 666 7.235935 TCTTTTCTAATAGACGAAGGGACAA 57.764 36.000 10.72 0.00 0.00 3.18
666 667 7.673180 TCTTTTCTAATAGACGAAGGGACAAA 58.327 34.615 10.72 0.00 0.00 2.83
667 668 8.319146 TCTTTTCTAATAGACGAAGGGACAAAT 58.681 33.333 10.72 0.00 0.00 2.32
668 669 9.595823 CTTTTCTAATAGACGAAGGGACAAATA 57.404 33.333 0.00 0.00 0.00 1.40
671 672 9.760077 TTCTAATAGACGAAGGGACAAATATTC 57.240 33.333 0.00 0.00 0.00 1.75
672 673 8.920174 TCTAATAGACGAAGGGACAAATATTCA 58.080 33.333 0.00 0.00 0.00 2.57
673 674 9.197694 CTAATAGACGAAGGGACAAATATTCAG 57.802 37.037 0.00 0.00 0.00 3.02
674 675 5.422214 AGACGAAGGGACAAATATTCAGT 57.578 39.130 0.00 0.00 0.00 3.41
675 676 6.540438 AGACGAAGGGACAAATATTCAGTA 57.460 37.500 0.00 0.00 0.00 2.74
676 677 6.338937 AGACGAAGGGACAAATATTCAGTAC 58.661 40.000 0.00 0.00 0.00 2.73
677 678 5.425630 ACGAAGGGACAAATATTCAGTACC 58.574 41.667 12.32 12.32 36.47 3.34
678 679 5.046159 ACGAAGGGACAAATATTCAGTACCA 60.046 40.000 19.22 0.00 38.79 3.25
679 680 5.293569 CGAAGGGACAAATATTCAGTACCAC 59.706 44.000 19.22 13.28 38.79 4.16
680 681 5.112129 AGGGACAAATATTCAGTACCACC 57.888 43.478 19.22 8.94 38.79 4.61
681 682 4.788617 AGGGACAAATATTCAGTACCACCT 59.211 41.667 19.22 10.45 38.79 4.00
682 683 5.104485 AGGGACAAATATTCAGTACCACCTC 60.104 44.000 19.22 0.00 38.79 3.85
683 684 4.809426 GGACAAATATTCAGTACCACCTCG 59.191 45.833 0.00 0.00 0.00 4.63
684 685 5.394883 GGACAAATATTCAGTACCACCTCGA 60.395 44.000 0.00 0.00 0.00 4.04
685 686 6.045072 ACAAATATTCAGTACCACCTCGAA 57.955 37.500 0.00 0.00 0.00 3.71
686 687 6.650120 ACAAATATTCAGTACCACCTCGAAT 58.350 36.000 0.00 0.00 0.00 3.34
687 688 7.788026 ACAAATATTCAGTACCACCTCGAATA 58.212 34.615 0.00 0.00 34.16 1.75
688 689 7.926555 ACAAATATTCAGTACCACCTCGAATAG 59.073 37.037 0.00 0.00 33.41 1.73
689 690 7.834881 AATATTCAGTACCACCTCGAATAGA 57.165 36.000 0.00 0.00 33.41 1.98
690 691 7.834881 ATATTCAGTACCACCTCGAATAGAA 57.165 36.000 0.00 0.00 33.41 2.10
691 692 5.988310 TTCAGTACCACCTCGAATAGAAA 57.012 39.130 0.00 0.00 0.00 2.52
692 693 5.988310 TCAGTACCACCTCGAATAGAAAA 57.012 39.130 0.00 0.00 0.00 2.29
693 694 6.349243 TCAGTACCACCTCGAATAGAAAAA 57.651 37.500 0.00 0.00 0.00 1.94
713 714 5.818136 AAAATCATGTAGATGGTGAACGG 57.182 39.130 0.00 0.00 36.96 4.44
714 715 4.753516 AATCATGTAGATGGTGAACGGA 57.246 40.909 0.00 0.00 36.96 4.69
715 716 4.963318 ATCATGTAGATGGTGAACGGAT 57.037 40.909 0.00 0.00 35.06 4.18
716 717 4.058721 TCATGTAGATGGTGAACGGATG 57.941 45.455 0.00 0.00 0.00 3.51
717 718 3.704061 TCATGTAGATGGTGAACGGATGA 59.296 43.478 0.00 0.00 0.00 2.92
718 719 4.161377 TCATGTAGATGGTGAACGGATGAA 59.839 41.667 0.00 0.00 0.00 2.57
719 720 4.545208 TGTAGATGGTGAACGGATGAAA 57.455 40.909 0.00 0.00 0.00 2.69
720 721 4.900684 TGTAGATGGTGAACGGATGAAAA 58.099 39.130 0.00 0.00 0.00 2.29
721 722 5.309638 TGTAGATGGTGAACGGATGAAAAA 58.690 37.500 0.00 0.00 0.00 1.94
722 723 5.411361 TGTAGATGGTGAACGGATGAAAAAG 59.589 40.000 0.00 0.00 0.00 2.27
723 724 4.398319 AGATGGTGAACGGATGAAAAAGT 58.602 39.130 0.00 0.00 0.00 2.66
724 725 4.827284 AGATGGTGAACGGATGAAAAAGTT 59.173 37.500 0.00 0.00 0.00 2.66
725 726 4.993029 TGGTGAACGGATGAAAAAGTTT 57.007 36.364 0.00 0.00 0.00 2.66
726 727 4.677584 TGGTGAACGGATGAAAAAGTTTG 58.322 39.130 0.00 0.00 0.00 2.93
727 728 4.399618 TGGTGAACGGATGAAAAAGTTTGA 59.600 37.500 0.00 0.00 0.00 2.69
728 729 5.105716 TGGTGAACGGATGAAAAAGTTTGAA 60.106 36.000 0.00 0.00 0.00 2.69
729 730 5.458779 GGTGAACGGATGAAAAAGTTTGAAG 59.541 40.000 0.00 0.00 0.00 3.02
730 731 6.262601 GTGAACGGATGAAAAAGTTTGAAGA 58.737 36.000 0.00 0.00 0.00 2.87
731 732 6.750039 GTGAACGGATGAAAAAGTTTGAAGAA 59.250 34.615 0.00 0.00 0.00 2.52
732 733 7.274686 GTGAACGGATGAAAAAGTTTGAAGAAA 59.725 33.333 0.00 0.00 0.00 2.52
733 734 7.274686 TGAACGGATGAAAAAGTTTGAAGAAAC 59.725 33.333 0.00 0.00 41.69 2.78
734 735 5.741982 ACGGATGAAAAAGTTTGAAGAAACG 59.258 36.000 0.00 0.00 45.34 3.60
735 736 5.331532 CGGATGAAAAAGTTTGAAGAAACGC 60.332 40.000 0.00 0.00 45.34 4.84
736 737 5.518487 GGATGAAAAAGTTTGAAGAAACGCA 59.482 36.000 0.00 0.00 45.34 5.24
737 738 6.200854 GGATGAAAAAGTTTGAAGAAACGCAT 59.799 34.615 0.00 0.00 45.34 4.73
738 739 6.959671 TGAAAAAGTTTGAAGAAACGCATT 57.040 29.167 0.00 0.00 45.34 3.56
739 740 7.357951 TGAAAAAGTTTGAAGAAACGCATTT 57.642 28.000 0.00 0.00 45.34 2.32
740 741 7.801752 TGAAAAAGTTTGAAGAAACGCATTTT 58.198 26.923 0.00 0.00 45.34 1.82
741 742 7.743838 TGAAAAAGTTTGAAGAAACGCATTTTG 59.256 29.630 0.00 0.00 45.34 2.44
742 743 6.720012 AAAGTTTGAAGAAACGCATTTTGT 57.280 29.167 0.00 0.00 45.34 2.83
743 744 6.720012 AAGTTTGAAGAAACGCATTTTGTT 57.280 29.167 0.00 0.00 45.34 2.83
744 745 6.720012 AGTTTGAAGAAACGCATTTTGTTT 57.280 29.167 0.00 0.00 45.34 2.83
745 746 7.127917 AGTTTGAAGAAACGCATTTTGTTTT 57.872 28.000 0.00 0.00 45.34 2.43
746 747 8.245701 AGTTTGAAGAAACGCATTTTGTTTTA 57.754 26.923 0.00 0.00 45.34 1.52
747 748 8.878769 AGTTTGAAGAAACGCATTTTGTTTTAT 58.121 25.926 0.00 0.00 45.34 1.40
748 749 9.484326 GTTTGAAGAAACGCATTTTGTTTTATT 57.516 25.926 0.00 0.00 39.51 1.40
749 750 9.483062 TTTGAAGAAACGCATTTTGTTTTATTG 57.517 25.926 0.00 0.00 39.51 1.90
750 751 7.625553 TGAAGAAACGCATTTTGTTTTATTGG 58.374 30.769 0.00 0.00 39.51 3.16
751 752 7.278868 TGAAGAAACGCATTTTGTTTTATTGGT 59.721 29.630 0.00 0.00 39.51 3.67
752 753 8.649973 AAGAAACGCATTTTGTTTTATTGGTA 57.350 26.923 0.00 0.00 39.51 3.25
753 754 8.293114 AGAAACGCATTTTGTTTTATTGGTAG 57.707 30.769 0.00 0.00 39.51 3.18
754 755 7.383843 AGAAACGCATTTTGTTTTATTGGTAGG 59.616 33.333 0.00 0.00 39.51 3.18
755 756 6.091718 ACGCATTTTGTTTTATTGGTAGGT 57.908 33.333 0.00 0.00 0.00 3.08
756 757 7.216973 ACGCATTTTGTTTTATTGGTAGGTA 57.783 32.000 0.00 0.00 0.00 3.08
757 758 7.309920 ACGCATTTTGTTTTATTGGTAGGTAG 58.690 34.615 0.00 0.00 0.00 3.18
758 759 6.750039 CGCATTTTGTTTTATTGGTAGGTAGG 59.250 38.462 0.00 0.00 0.00 3.18
759 760 7.576098 CGCATTTTGTTTTATTGGTAGGTAGGT 60.576 37.037 0.00 0.00 0.00 3.08
760 761 8.741841 GCATTTTGTTTTATTGGTAGGTAGGTA 58.258 33.333 0.00 0.00 0.00 3.08
862 863 8.746052 ACACAGAGGTATAGATATAGATCTGC 57.254 38.462 10.17 0.78 42.66 4.26
863 864 8.556589 ACACAGAGGTATAGATATAGATCTGCT 58.443 37.037 10.17 0.39 42.66 4.24
866 867 9.203421 CAGAGGTATAGATATAGATCTGCTACG 57.797 40.741 10.17 0.00 42.66 3.51
867 868 8.930527 AGAGGTATAGATATAGATCTGCTACGT 58.069 37.037 10.17 11.83 42.66 3.57
870 871 9.426837 GGTATAGATATAGATCTGCTACGTAGG 57.573 40.741 23.47 8.51 42.66 3.18
871 872 9.985730 GTATAGATATAGATCTGCTACGTAGGT 57.014 37.037 23.47 0.00 42.66 3.08
872 873 8.896320 ATAGATATAGATCTGCTACGTAGGTG 57.104 38.462 23.47 0.01 42.66 4.00
873 874 6.713276 AGATATAGATCTGCTACGTAGGTGT 58.287 40.000 23.47 0.00 41.12 4.16
874 875 7.849160 AGATATAGATCTGCTACGTAGGTGTA 58.151 38.462 23.47 0.43 41.12 2.90
875 876 7.982919 AGATATAGATCTGCTACGTAGGTGTAG 59.017 40.741 23.47 8.25 41.12 2.74
884 885 5.859521 CTACGTAGGTGTAGCAGGTATAG 57.140 47.826 15.07 0.00 35.80 1.31
900 901 7.802738 GCAGGTATAGATATAGATCTGCTACG 58.197 42.308 17.76 2.61 42.66 3.51
901 902 7.442969 GCAGGTATAGATATAGATCTGCTACGT 59.557 40.741 17.76 9.75 42.66 3.57
902 903 9.984190 CAGGTATAGATATAGATCTGCTACGTA 57.016 37.037 10.17 0.00 42.66 3.57
1084 1094 2.103373 CTCTGGCAACACTAGGAGCTA 58.897 52.381 0.00 0.00 46.17 3.32
1158 1168 4.063967 AATGCCGCGGACGTCTCA 62.064 61.111 33.48 17.16 37.70 3.27
1209 1219 3.381983 ATCTGCTCGTCCACGCCA 61.382 61.111 0.00 0.00 39.60 5.69
1346 1356 4.717629 CAACCTCTCGTCCGCGCA 62.718 66.667 8.75 0.00 38.14 6.09
1951 1964 1.002257 AACGTGATGCTGATGGGCA 60.002 52.632 0.00 0.00 46.63 5.36
1968 1981 1.228124 CAACGGCAAGGGGAAGACA 60.228 57.895 0.00 0.00 0.00 3.41
1981 1994 0.109272 GAAGACAGTCATCGTCGGCA 60.109 55.000 2.66 0.00 38.46 5.69
2137 2173 6.938507 TCCATCTTTTTCCCATCTTCAATTG 58.061 36.000 0.00 0.00 0.00 2.32
2139 2175 6.296030 CCATCTTTTTCCCATCTTCAATTGGT 60.296 38.462 5.42 0.00 0.00 3.67
2140 2176 7.093377 CCATCTTTTTCCCATCTTCAATTGGTA 60.093 37.037 5.42 0.00 0.00 3.25
2162 2202 6.990939 GGTAACAACTTTCTTCTTGTCCTAGT 59.009 38.462 0.00 0.00 30.11 2.57
2212 2528 2.313317 CCCTACAATCATGGCAGCATT 58.687 47.619 0.00 0.00 0.00 3.56
2357 2685 8.083828 AGTCACTAGATCCATACACTTTTCAT 57.916 34.615 0.00 0.00 0.00 2.57
2392 2779 6.154363 TCACCCATCTCATCGCAATATGTATA 59.846 38.462 0.00 0.00 0.00 1.47
2691 3087 2.300152 TGGACTTCATCTTCGCAACTCT 59.700 45.455 0.00 0.00 0.00 3.24
2760 3156 1.673168 GCCAGAAGGACATGATCACC 58.327 55.000 0.00 0.00 36.89 4.02
2995 3391 0.672342 CTACGGGGAGTATGGGAACG 59.328 60.000 0.00 0.00 34.34 3.95
3051 3447 4.664677 GCCGGAGTGCACACGTCT 62.665 66.667 25.35 4.33 36.20 4.18
3151 3547 1.138266 GCTACACTTCCGGGCTATGAA 59.862 52.381 0.00 0.00 0.00 2.57
3182 3578 1.337703 TCATGTTGTTTGTGCTCTGCC 59.662 47.619 0.00 0.00 0.00 4.85
3349 7713 6.222038 TCTTATCGAGGCTTGTTATTCACT 57.778 37.500 0.77 0.00 0.00 3.41
3436 7801 9.809096 TCAAGCTACAACTATGATAGAAAGAAG 57.191 33.333 6.45 0.00 0.00 2.85
3440 7805 7.114247 GCTACAACTATGATAGAAAGAAGCGAG 59.886 40.741 6.45 0.00 0.00 5.03
3451 7816 2.743928 AAGCGAGCAAGAAGGGCG 60.744 61.111 0.00 0.00 36.08 6.13
3492 7858 4.699925 TGTATAATTACCCTCACTGCCC 57.300 45.455 0.00 0.00 0.00 5.36
3521 7887 0.383231 ACAAACAGCTGCTCTTGCAC 59.617 50.000 15.27 0.00 45.31 4.57
3531 7905 1.270252 TGCTCTTGCACGATCAGTTCA 60.270 47.619 0.00 0.00 45.31 3.18
3562 7936 1.166129 CTGACTCTCCCGAGAACGAA 58.834 55.000 0.00 0.00 42.66 3.85
3587 7961 6.608808 ACATTCTTGGGCTAGAAAATAGCAAT 59.391 34.615 8.96 0.00 42.06 3.56
3607 7981 5.450550 GCAATAAAATACACCTTCAGGAGCC 60.451 44.000 0.00 0.00 38.94 4.70
3609 7983 1.276622 AATACACCTTCAGGAGCCGT 58.723 50.000 0.00 0.00 38.94 5.68
3650 8024 9.875691 ATTTTCAGAGGATTTTAAAACATAGCC 57.124 29.630 1.97 0.00 0.00 3.93
3651 8025 8.415950 TTTCAGAGGATTTTAAAACATAGCCA 57.584 30.769 1.97 0.00 0.00 4.75
3652 8026 7.630242 TCAGAGGATTTTAAAACATAGCCAG 57.370 36.000 1.97 0.00 0.00 4.85
3653 8027 7.402054 TCAGAGGATTTTAAAACATAGCCAGA 58.598 34.615 1.97 0.00 0.00 3.86
3654 8028 7.554118 TCAGAGGATTTTAAAACATAGCCAGAG 59.446 37.037 1.97 0.00 0.00 3.35
3655 8029 6.830838 AGAGGATTTTAAAACATAGCCAGAGG 59.169 38.462 1.97 0.00 0.00 3.69
3656 8030 6.731467 AGGATTTTAAAACATAGCCAGAGGA 58.269 36.000 1.97 0.00 0.00 3.71
3657 8031 7.357471 AGGATTTTAAAACATAGCCAGAGGAT 58.643 34.615 1.97 0.00 0.00 3.24
3658 8032 7.841222 AGGATTTTAAAACATAGCCAGAGGATT 59.159 33.333 1.97 0.00 0.00 3.01
3659 8033 8.478066 GGATTTTAAAACATAGCCAGAGGATTT 58.522 33.333 1.97 0.00 0.00 2.17
3660 8034 9.875691 GATTTTAAAACATAGCCAGAGGATTTT 57.124 29.630 1.97 0.00 0.00 1.82
3678 8052 6.033966 GGATTTTAAAACATAGCCCGAACTG 58.966 40.000 1.97 0.00 0.00 3.16
3692 8066 2.223971 CCGAACTGTAGGGATAATGCGT 60.224 50.000 0.00 0.00 0.00 5.24
3703 8077 4.161565 AGGGATAATGCGTAACAGAAGACA 59.838 41.667 0.00 0.00 0.00 3.41
3740 8114 5.049612 GTGTAGGAGTTGTTTTAGCAGAACC 60.050 44.000 0.00 0.00 0.00 3.62
3741 8115 3.487372 AGGAGTTGTTTTAGCAGAACCC 58.513 45.455 0.00 0.00 0.00 4.11
3742 8116 2.557056 GGAGTTGTTTTAGCAGAACCCC 59.443 50.000 0.00 0.00 0.00 4.95
3743 8117 3.219281 GAGTTGTTTTAGCAGAACCCCA 58.781 45.455 0.00 0.00 0.00 4.96
3744 8118 3.826729 GAGTTGTTTTAGCAGAACCCCAT 59.173 43.478 0.00 0.00 0.00 4.00
3745 8119 4.993028 AGTTGTTTTAGCAGAACCCCATA 58.007 39.130 0.00 0.00 0.00 2.74
3746 8120 5.580022 AGTTGTTTTAGCAGAACCCCATAT 58.420 37.500 0.00 0.00 0.00 1.78
3747 8121 5.418840 AGTTGTTTTAGCAGAACCCCATATG 59.581 40.000 0.00 0.00 0.00 1.78
3748 8122 3.699038 TGTTTTAGCAGAACCCCATATGC 59.301 43.478 0.00 0.00 38.97 3.14
3750 8124 5.130350 GTTTTAGCAGAACCCCATATGCTA 58.870 41.667 0.00 1.81 46.70 3.49
3751 8125 2.938956 AGCAGAACCCCATATGCTAC 57.061 50.000 0.00 0.00 46.70 3.58
3752 8126 1.421646 AGCAGAACCCCATATGCTACC 59.578 52.381 0.00 0.00 46.70 3.18
3753 8127 1.545651 GCAGAACCCCATATGCTACCC 60.546 57.143 0.00 0.00 35.78 3.69
3754 8128 1.073923 CAGAACCCCATATGCTACCCC 59.926 57.143 0.00 0.00 0.00 4.95
3755 8129 0.404426 GAACCCCATATGCTACCCCC 59.596 60.000 0.00 0.00 0.00 5.40
3756 8130 1.423794 AACCCCATATGCTACCCCCG 61.424 60.000 0.00 0.00 0.00 5.73
3757 8131 1.846124 CCCCATATGCTACCCCCGT 60.846 63.158 0.00 0.00 0.00 5.28
3758 8132 1.677552 CCCATATGCTACCCCCGTC 59.322 63.158 0.00 0.00 0.00 4.79
3759 8133 1.677552 CCATATGCTACCCCCGTCC 59.322 63.158 0.00 0.00 0.00 4.79
3760 8134 1.677552 CATATGCTACCCCCGTCCC 59.322 63.158 0.00 0.00 0.00 4.46
3761 8135 1.538135 ATATGCTACCCCCGTCCCC 60.538 63.158 0.00 0.00 0.00 4.81
3762 8136 3.779623 TATGCTACCCCCGTCCCCC 62.780 68.421 0.00 0.00 0.00 5.40
3785 8159 4.180946 CCTCTCGGAGGCGACACG 62.181 72.222 4.96 0.00 43.29 4.49
3786 8160 4.180946 CTCTCGGAGGCGACACGG 62.181 72.222 4.96 0.00 34.35 4.94
3791 8165 4.754667 GGAGGCGACACGGGGAAC 62.755 72.222 0.00 0.00 0.00 3.62
3827 8201 4.475444 CGGCCCTCCTCCACCCTA 62.475 72.222 0.00 0.00 0.00 3.53
3828 8202 2.768769 GGCCCTCCTCCACCCTAC 60.769 72.222 0.00 0.00 0.00 3.18
3829 8203 2.768769 GCCCTCCTCCACCCTACC 60.769 72.222 0.00 0.00 0.00 3.18
3830 8204 2.040779 CCCTCCTCCACCCTACCC 60.041 72.222 0.00 0.00 0.00 3.69
3831 8205 2.647949 CCCTCCTCCACCCTACCCT 61.648 68.421 0.00 0.00 0.00 4.34
3832 8206 1.075151 CCTCCTCCACCCTACCCTC 60.075 68.421 0.00 0.00 0.00 4.30
3833 8207 1.075151 CTCCTCCACCCTACCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
3834 8208 2.040779 CCTCCACCCTACCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
3835 8209 2.040779 CTCCACCCTACCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
3836 8210 3.702623 TCCACCCTACCCTCCCCC 61.703 72.222 0.00 0.00 0.00 5.40
3837 8211 3.707189 CCACCCTACCCTCCCCCT 61.707 72.222 0.00 0.00 0.00 4.79
3838 8212 2.040779 CACCCTACCCTCCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
3839 8213 3.763757 ACCCTACCCTCCCCCTCG 61.764 72.222 0.00 0.00 0.00 4.63
3918 8292 3.851955 CCATGGCATGGCTCTTCC 58.148 61.111 31.96 0.00 44.70 3.46
3919 8293 1.229359 CCATGGCATGGCTCTTCCT 59.771 57.895 31.96 0.00 44.70 3.36
3920 8294 0.396695 CCATGGCATGGCTCTTCCTT 60.397 55.000 31.96 0.00 44.70 3.36
3921 8295 1.030457 CATGGCATGGCTCTTCCTTC 58.970 55.000 19.80 0.00 35.26 3.46
3922 8296 0.924823 ATGGCATGGCTCTTCCTTCT 59.075 50.000 21.08 0.00 35.26 2.85
3923 8297 0.700564 TGGCATGGCTCTTCCTTCTT 59.299 50.000 21.08 0.00 35.26 2.52
3924 8298 1.340405 TGGCATGGCTCTTCCTTCTTC 60.340 52.381 21.08 0.00 35.26 2.87
3925 8299 1.012841 GCATGGCTCTTCCTTCTTCG 58.987 55.000 0.00 0.00 35.26 3.79
3926 8300 1.677217 GCATGGCTCTTCCTTCTTCGT 60.677 52.381 0.00 0.00 35.26 3.85
3927 8301 2.275318 CATGGCTCTTCCTTCTTCGTC 58.725 52.381 0.00 0.00 35.26 4.20
3928 8302 0.243907 TGGCTCTTCCTTCTTCGTCG 59.756 55.000 0.00 0.00 35.26 5.12
3929 8303 0.244178 GGCTCTTCCTTCTTCGTCGT 59.756 55.000 0.00 0.00 0.00 4.34
3930 8304 1.341606 GCTCTTCCTTCTTCGTCGTG 58.658 55.000 0.00 0.00 0.00 4.35
3931 8305 1.983972 CTCTTCCTTCTTCGTCGTGG 58.016 55.000 0.00 0.00 0.00 4.94
3932 8306 0.038526 TCTTCCTTCTTCGTCGTGGC 60.039 55.000 0.00 0.00 0.00 5.01
3933 8307 1.344942 CTTCCTTCTTCGTCGTGGCG 61.345 60.000 0.00 0.00 0.00 5.69
3934 8308 2.758770 TTCCTTCTTCGTCGTGGCGG 62.759 60.000 0.00 0.00 0.00 6.13
3935 8309 3.479269 CTTCTTCGTCGTGGCGGC 61.479 66.667 0.00 0.00 0.00 6.53
3952 8326 3.341043 CGCATTCGCTCCCGATGG 61.341 66.667 0.00 0.00 43.97 3.51
3953 8327 2.974698 GCATTCGCTCCCGATGGG 60.975 66.667 0.00 0.00 43.97 4.00
3954 8328 2.974698 CATTCGCTCCCGATGGGC 60.975 66.667 0.00 0.00 43.94 5.36
3955 8329 3.164269 ATTCGCTCCCGATGGGCT 61.164 61.111 0.00 0.00 43.94 5.19
3956 8330 2.746375 ATTCGCTCCCGATGGGCTT 61.746 57.895 0.00 0.00 43.94 4.35
3957 8331 2.947938 ATTCGCTCCCGATGGGCTTG 62.948 60.000 0.00 0.00 43.94 4.01
3959 8333 4.115199 GCTCCCGATGGGCTTGGT 62.115 66.667 0.00 0.00 43.94 3.67
3960 8334 2.124570 CTCCCGATGGGCTTGGTG 60.125 66.667 0.00 0.00 43.94 4.17
3961 8335 3.704231 CTCCCGATGGGCTTGGTGG 62.704 68.421 0.00 0.00 43.94 4.61
3962 8336 3.727258 CCCGATGGGCTTGGTGGA 61.727 66.667 0.00 0.00 35.35 4.02
3963 8337 2.124570 CCGATGGGCTTGGTGGAG 60.125 66.667 0.00 0.00 0.00 3.86
3964 8338 2.825836 CGATGGGCTTGGTGGAGC 60.826 66.667 0.00 0.00 41.96 4.70
3965 8339 2.825836 GATGGGCTTGGTGGAGCG 60.826 66.667 0.00 0.00 43.62 5.03
3966 8340 3.329542 GATGGGCTTGGTGGAGCGA 62.330 63.158 0.00 0.00 43.62 4.93
3967 8341 3.628646 ATGGGCTTGGTGGAGCGAC 62.629 63.158 0.00 0.00 43.62 5.19
3971 8345 2.357517 CTTGGTGGAGCGACGCTT 60.358 61.111 25.30 7.72 39.88 4.68
3972 8346 2.357034 TTGGTGGAGCGACGCTTC 60.357 61.111 25.30 23.38 39.88 3.86
3973 8347 3.158537 TTGGTGGAGCGACGCTTCA 62.159 57.895 26.78 26.78 42.52 3.02
3974 8348 2.357034 GGTGGAGCGACGCTTCAA 60.357 61.111 31.54 13.78 46.56 2.69
3975 8349 1.959226 GGTGGAGCGACGCTTCAAA 60.959 57.895 31.54 8.35 46.56 2.69
3976 8350 1.493311 GTGGAGCGACGCTTCAAAG 59.507 57.895 31.54 0.00 46.56 2.77
3977 8351 1.069090 TGGAGCGACGCTTCAAAGT 59.931 52.632 28.22 1.00 41.71 2.66
3978 8352 0.531974 TGGAGCGACGCTTCAAAGTT 60.532 50.000 28.22 0.13 41.71 2.66
3979 8353 0.164002 GGAGCGACGCTTCAAAGTTC 59.836 55.000 25.30 8.38 39.88 3.01
3980 8354 0.164002 GAGCGACGCTTCAAAGTTCC 59.836 55.000 25.30 3.53 39.88 3.62
3981 8355 1.154654 GCGACGCTTCAAAGTTCCG 60.155 57.895 13.73 0.00 0.00 4.30
3982 8356 1.491563 CGACGCTTCAAAGTTCCGG 59.508 57.895 0.00 0.00 0.00 5.14
3983 8357 1.206831 GACGCTTCAAAGTTCCGGC 59.793 57.895 0.00 0.00 0.00 6.13
3984 8358 1.503818 GACGCTTCAAAGTTCCGGCA 61.504 55.000 0.00 0.00 0.00 5.69
3985 8359 1.207593 CGCTTCAAAGTTCCGGCAG 59.792 57.895 0.00 0.00 0.00 4.85
3986 8360 1.081175 GCTTCAAAGTTCCGGCAGC 60.081 57.895 0.00 0.00 0.00 5.25
3987 8361 1.207593 CTTCAAAGTTCCGGCAGCG 59.792 57.895 0.00 0.00 0.00 5.18
3988 8362 2.187599 CTTCAAAGTTCCGGCAGCGG 62.188 60.000 0.00 0.00 0.00 5.52
3989 8363 4.404654 CAAAGTTCCGGCAGCGGC 62.405 66.667 0.00 0.00 40.13 6.53
3990 8364 4.643387 AAAGTTCCGGCAGCGGCT 62.643 61.111 9.17 0.00 40.87 5.52
4006 8380 3.842923 CTCACTCAGCGGCGGGAT 61.843 66.667 9.78 0.00 0.00 3.85
4007 8381 4.147449 TCACTCAGCGGCGGGATG 62.147 66.667 9.78 0.00 0.00 3.51
4010 8384 4.598894 CTCAGCGGCGGGATGGAG 62.599 72.222 9.78 0.00 31.40 3.86
4018 8392 3.866582 CGGGATGGAGGGCCTGTC 61.867 72.222 12.95 6.17 34.31 3.51
4019 8393 3.493303 GGGATGGAGGGCCTGTCC 61.493 72.222 12.95 15.67 38.30 4.02
4039 8413 3.376078 GTCCGGTGGTGTCGCCTA 61.376 66.667 0.00 0.00 41.26 3.93
4040 8414 3.376078 TCCGGTGGTGTCGCCTAC 61.376 66.667 0.00 0.55 41.26 3.18
4041 8415 3.687102 CCGGTGGTGTCGCCTACA 61.687 66.667 3.62 0.00 41.26 2.74
4077 8451 2.629336 GGGCTCTTGACCCTAGATTG 57.371 55.000 0.00 0.00 44.68 2.67
4078 8452 1.141858 GGGCTCTTGACCCTAGATTGG 59.858 57.143 0.00 0.00 44.68 3.16
4079 8453 2.119495 GGCTCTTGACCCTAGATTGGA 58.881 52.381 0.00 0.00 0.00 3.53
4080 8454 2.708325 GGCTCTTGACCCTAGATTGGAT 59.292 50.000 0.00 0.00 0.00 3.41
4081 8455 3.244387 GGCTCTTGACCCTAGATTGGATC 60.244 52.174 0.00 0.00 0.00 3.36
4082 8456 3.645687 GCTCTTGACCCTAGATTGGATCT 59.354 47.826 0.00 0.00 43.33 2.75
4083 8457 4.502950 GCTCTTGACCCTAGATTGGATCTG 60.503 50.000 0.00 0.00 40.51 2.90
4084 8458 3.969976 TCTTGACCCTAGATTGGATCTGG 59.030 47.826 0.00 0.00 40.51 3.86
4090 8464 3.482156 CTAGATTGGATCTGGGTGGTG 57.518 52.381 0.82 0.00 40.51 4.17
4091 8465 0.257039 AGATTGGATCTGGGTGGTGC 59.743 55.000 0.00 0.00 38.44 5.01
4092 8466 0.257039 GATTGGATCTGGGTGGTGCT 59.743 55.000 0.00 0.00 0.00 4.40
4093 8467 0.257039 ATTGGATCTGGGTGGTGCTC 59.743 55.000 0.00 0.00 0.00 4.26
4094 8468 0.842030 TTGGATCTGGGTGGTGCTCT 60.842 55.000 0.00 0.00 0.00 4.09
4095 8469 1.222936 GGATCTGGGTGGTGCTCTG 59.777 63.158 0.00 0.00 0.00 3.35
4096 8470 1.222936 GATCTGGGTGGTGCTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
4097 8471 2.883267 GATCTGGGTGGTGCTCTGGC 62.883 65.000 0.00 0.00 39.26 4.85
4106 8480 2.271173 TGCTCTGGCATGGCTCTG 59.729 61.111 21.08 10.56 44.28 3.35
4107 8481 2.516460 GCTCTGGCATGGCTCTGG 60.516 66.667 21.08 8.95 38.54 3.86
4108 8482 2.516460 CTCTGGCATGGCTCTGGC 60.516 66.667 21.08 7.14 41.78 4.85
4109 8483 3.013327 TCTGGCATGGCTCTGGCT 61.013 61.111 21.08 0.00 41.93 4.75
4110 8484 2.829003 CTGGCATGGCTCTGGCTG 60.829 66.667 21.08 10.05 41.93 4.85
4117 8491 4.025858 GGCTCTGGCTGCCTGTCA 62.026 66.667 21.03 3.51 46.38 3.58
4140 8514 4.148825 GGTGGCGGCGAGTCTCAT 62.149 66.667 12.98 0.00 0.00 2.90
4141 8515 2.887568 GTGGCGGCGAGTCTCATG 60.888 66.667 12.98 0.00 0.00 3.07
4142 8516 4.147449 TGGCGGCGAGTCTCATGG 62.147 66.667 12.98 0.00 0.00 3.66
4145 8519 3.842923 CGGCGAGTCTCATGGCCT 61.843 66.667 0.00 0.00 41.54 5.19
4146 8520 2.586792 GGCGAGTCTCATGGCCTT 59.413 61.111 3.32 0.00 40.62 4.35
4147 8521 1.078143 GGCGAGTCTCATGGCCTTT 60.078 57.895 3.32 0.00 40.62 3.11
4148 8522 1.372087 GGCGAGTCTCATGGCCTTTG 61.372 60.000 3.32 1.47 40.62 2.77
4149 8523 1.372087 GCGAGTCTCATGGCCTTTGG 61.372 60.000 3.32 0.00 0.00 3.28
4150 8524 0.250234 CGAGTCTCATGGCCTTTGGA 59.750 55.000 3.32 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.865001 CGAGTTTAAGGAAACACATTTTGAAAA 58.135 29.630 0.00 0.00 46.30 2.29
84 85 8.030106 ACGAGTTTAAGGAAACACATTTTGAAA 58.970 29.630 3.60 0.00 46.30 2.69
85 86 7.540299 ACGAGTTTAAGGAAACACATTTTGAA 58.460 30.769 3.60 0.00 46.30 2.69
86 87 7.090953 ACGAGTTTAAGGAAACACATTTTGA 57.909 32.000 3.60 0.00 46.30 2.69
87 88 7.911205 TGTACGAGTTTAAGGAAACACATTTTG 59.089 33.333 3.60 0.00 46.30 2.44
88 89 7.987649 TGTACGAGTTTAAGGAAACACATTTT 58.012 30.769 3.60 0.00 46.30 1.82
89 90 7.556733 TGTACGAGTTTAAGGAAACACATTT 57.443 32.000 3.60 0.00 46.30 2.32
90 91 7.739498 ATGTACGAGTTTAAGGAAACACATT 57.261 32.000 3.60 0.00 46.30 2.71
91 92 7.739498 AATGTACGAGTTTAAGGAAACACAT 57.261 32.000 3.60 2.04 46.30 3.21
92 93 8.836268 ATAATGTACGAGTTTAAGGAAACACA 57.164 30.769 3.60 0.00 46.30 3.72
187 188 9.899226 CCAAAGTTGTTCCAAATTTTACAAAAA 57.101 25.926 10.29 0.00 32.84 1.94
188 189 9.284968 TCCAAAGTTGTTCCAAATTTTACAAAA 57.715 25.926 10.29 0.00 32.84 2.44
189 190 8.848474 TCCAAAGTTGTTCCAAATTTTACAAA 57.152 26.923 10.29 0.00 32.84 2.83
190 191 8.848474 TTCCAAAGTTGTTCCAAATTTTACAA 57.152 26.923 0.18 6.30 0.00 2.41
191 192 8.848474 TTTCCAAAGTTGTTCCAAATTTTACA 57.152 26.923 0.18 0.00 0.00 2.41
192 193 7.908082 GCTTTCCAAAGTTGTTCCAAATTTTAC 59.092 33.333 0.18 0.00 38.28 2.01
193 194 7.607991 TGCTTTCCAAAGTTGTTCCAAATTTTA 59.392 29.630 0.18 0.00 38.28 1.52
194 195 6.432472 TGCTTTCCAAAGTTGTTCCAAATTTT 59.568 30.769 0.18 0.00 38.28 1.82
195 196 5.942826 TGCTTTCCAAAGTTGTTCCAAATTT 59.057 32.000 1.14 0.00 38.28 1.82
196 197 5.353956 GTGCTTTCCAAAGTTGTTCCAAATT 59.646 36.000 1.14 0.00 38.28 1.82
197 198 4.875536 GTGCTTTCCAAAGTTGTTCCAAAT 59.124 37.500 1.14 0.00 38.28 2.32
198 199 4.249661 GTGCTTTCCAAAGTTGTTCCAAA 58.750 39.130 1.14 0.00 38.28 3.28
199 200 3.259374 TGTGCTTTCCAAAGTTGTTCCAA 59.741 39.130 1.14 0.00 38.28 3.53
200 201 2.828520 TGTGCTTTCCAAAGTTGTTCCA 59.171 40.909 1.14 0.00 38.28 3.53
201 202 3.518634 TGTGCTTTCCAAAGTTGTTCC 57.481 42.857 1.14 0.00 38.28 3.62
202 203 5.167845 TCTTTGTGCTTTCCAAAGTTGTTC 58.832 37.500 11.38 0.00 45.67 3.18
203 204 5.146010 TCTTTGTGCTTTCCAAAGTTGTT 57.854 34.783 11.38 0.00 45.67 2.83
204 205 4.799564 TCTTTGTGCTTTCCAAAGTTGT 57.200 36.364 11.38 0.00 45.67 3.32
205 206 6.479095 TTTTCTTTGTGCTTTCCAAAGTTG 57.521 33.333 11.38 0.00 45.67 3.16
256 257 5.105716 TCCGTTTTGAAAAATGTCCAGAACA 60.106 36.000 6.91 0.00 43.51 3.18
257 258 5.344884 TCCGTTTTGAAAAATGTCCAGAAC 58.655 37.500 6.91 0.00 33.99 3.01
258 259 5.584253 TCCGTTTTGAAAAATGTCCAGAA 57.416 34.783 6.91 0.00 33.99 3.02
259 260 5.584253 TTCCGTTTTGAAAAATGTCCAGA 57.416 34.783 6.91 0.00 33.99 3.86
260 261 9.801873 ATATATTCCGTTTTGAAAAATGTCCAG 57.198 29.630 6.91 0.00 33.99 3.86
364 365 9.330063 CAAGCTTATTTTTCTTTCTCCCTTTTT 57.670 29.630 0.00 0.00 0.00 1.94
365 366 8.704668 TCAAGCTTATTTTTCTTTCTCCCTTTT 58.295 29.630 0.00 0.00 0.00 2.27
366 367 8.250143 TCAAGCTTATTTTTCTTTCTCCCTTT 57.750 30.769 0.00 0.00 0.00 3.11
367 368 7.839680 TCAAGCTTATTTTTCTTTCTCCCTT 57.160 32.000 0.00 0.00 0.00 3.95
368 369 7.839680 TTCAAGCTTATTTTTCTTTCTCCCT 57.160 32.000 0.00 0.00 0.00 4.20
369 370 7.600375 CCTTTCAAGCTTATTTTTCTTTCTCCC 59.400 37.037 0.00 0.00 0.00 4.30
370 371 7.600375 CCCTTTCAAGCTTATTTTTCTTTCTCC 59.400 37.037 0.00 0.00 0.00 3.71
371 372 8.360390 TCCCTTTCAAGCTTATTTTTCTTTCTC 58.640 33.333 0.00 0.00 0.00 2.87
372 373 8.250143 TCCCTTTCAAGCTTATTTTTCTTTCT 57.750 30.769 0.00 0.00 0.00 2.52
373 374 8.887036 TTCCCTTTCAAGCTTATTTTTCTTTC 57.113 30.769 0.00 0.00 0.00 2.62
374 375 9.679661 TTTTCCCTTTCAAGCTTATTTTTCTTT 57.320 25.926 0.00 0.00 0.00 2.52
375 376 9.679661 TTTTTCCCTTTCAAGCTTATTTTTCTT 57.320 25.926 0.00 0.00 0.00 2.52
376 377 9.330063 CTTTTTCCCTTTCAAGCTTATTTTTCT 57.670 29.630 0.00 0.00 0.00 2.52
377 378 9.325198 TCTTTTTCCCTTTCAAGCTTATTTTTC 57.675 29.630 0.00 0.00 0.00 2.29
378 379 9.109393 GTCTTTTTCCCTTTCAAGCTTATTTTT 57.891 29.630 0.00 0.00 0.00 1.94
379 380 8.264347 TGTCTTTTTCCCTTTCAAGCTTATTTT 58.736 29.630 0.00 0.00 0.00 1.82
380 381 7.791029 TGTCTTTTTCCCTTTCAAGCTTATTT 58.209 30.769 0.00 0.00 0.00 1.40
381 382 7.360113 TGTCTTTTTCCCTTTCAAGCTTATT 57.640 32.000 0.00 0.00 0.00 1.40
382 383 6.976934 TGTCTTTTTCCCTTTCAAGCTTAT 57.023 33.333 0.00 0.00 0.00 1.73
383 384 6.783708 TTGTCTTTTTCCCTTTCAAGCTTA 57.216 33.333 0.00 0.00 0.00 3.09
384 385 5.675684 TTGTCTTTTTCCCTTTCAAGCTT 57.324 34.783 0.00 0.00 0.00 3.74
385 386 5.675684 TTTGTCTTTTTCCCTTTCAAGCT 57.324 34.783 0.00 0.00 0.00 3.74
386 387 6.925610 ATTTTGTCTTTTTCCCTTTCAAGC 57.074 33.333 0.00 0.00 0.00 4.01
388 389 9.726438 TGTTTATTTTGTCTTTTTCCCTTTCAA 57.274 25.926 0.00 0.00 0.00 2.69
389 390 9.726438 TTGTTTATTTTGTCTTTTTCCCTTTCA 57.274 25.926 0.00 0.00 0.00 2.69
391 392 9.952030 TCTTGTTTATTTTGTCTTTTTCCCTTT 57.048 25.926 0.00 0.00 0.00 3.11
392 393 9.952030 TTCTTGTTTATTTTGTCTTTTTCCCTT 57.048 25.926 0.00 0.00 0.00 3.95
393 394 9.952030 TTTCTTGTTTATTTTGTCTTTTTCCCT 57.048 25.926 0.00 0.00 0.00 4.20
411 412 9.591792 CATTTCTTCCTCTTTTTCTTTCTTGTT 57.408 29.630 0.00 0.00 0.00 2.83
412 413 8.971073 TCATTTCTTCCTCTTTTTCTTTCTTGT 58.029 29.630 0.00 0.00 0.00 3.16
413 414 9.807649 TTCATTTCTTCCTCTTTTTCTTTCTTG 57.192 29.630 0.00 0.00 0.00 3.02
472 473 1.411246 GGCTGGACCGTTTTCCTTTTT 59.589 47.619 0.00 0.00 36.51 1.94
473 474 1.037493 GGCTGGACCGTTTTCCTTTT 58.963 50.000 0.00 0.00 36.51 2.27
474 475 0.826256 GGGCTGGACCGTTTTCCTTT 60.826 55.000 0.00 0.00 40.62 3.11
475 476 1.228459 GGGCTGGACCGTTTTCCTT 60.228 57.895 0.00 0.00 40.62 3.36
476 477 2.434774 GGGCTGGACCGTTTTCCT 59.565 61.111 0.00 0.00 40.62 3.36
477 478 2.675423 GGGGCTGGACCGTTTTCC 60.675 66.667 0.00 0.00 40.62 3.13
478 479 3.053896 CGGGGCTGGACCGTTTTC 61.054 66.667 0.00 0.00 46.03 2.29
484 485 2.989253 CCAAAACGGGGCTGGACC 60.989 66.667 0.00 0.00 37.93 4.46
491 492 2.676471 CAGGGAGCCAAAACGGGG 60.676 66.667 0.00 0.00 34.06 5.73
492 493 2.115266 ACAGGGAGCCAAAACGGG 59.885 61.111 0.00 0.00 34.06 5.28
493 494 2.919494 GCACAGGGAGCCAAAACGG 61.919 63.158 0.00 0.00 38.11 4.44
494 495 2.644992 GCACAGGGAGCCAAAACG 59.355 61.111 0.00 0.00 0.00 3.60
495 496 1.452145 TTCGCACAGGGAGCCAAAAC 61.452 55.000 0.00 0.00 0.00 2.43
496 497 0.539438 ATTCGCACAGGGAGCCAAAA 60.539 50.000 0.00 0.00 0.00 2.44
497 498 0.539438 AATTCGCACAGGGAGCCAAA 60.539 50.000 0.00 0.00 0.00 3.28
498 499 0.539438 AAATTCGCACAGGGAGCCAA 60.539 50.000 0.00 0.00 0.00 4.52
499 500 1.074775 AAATTCGCACAGGGAGCCA 59.925 52.632 0.00 0.00 0.00 4.75
500 501 1.508088 CAAATTCGCACAGGGAGCC 59.492 57.895 0.00 0.00 0.00 4.70
501 502 1.153958 GCAAATTCGCACAGGGAGC 60.154 57.895 0.00 0.00 0.00 4.70
502 503 0.597568 TTGCAAATTCGCACAGGGAG 59.402 50.000 0.00 0.00 42.87 4.30
503 504 0.313672 GTTGCAAATTCGCACAGGGA 59.686 50.000 0.00 0.00 42.87 4.20
504 505 0.314935 AGTTGCAAATTCGCACAGGG 59.685 50.000 0.00 0.00 42.87 4.45
505 506 2.987413 TAGTTGCAAATTCGCACAGG 57.013 45.000 4.05 0.00 42.87 4.00
506 507 6.451054 CGTTAAATAGTTGCAAATTCGCACAG 60.451 38.462 4.05 0.00 42.87 3.66
507 508 5.340932 CGTTAAATAGTTGCAAATTCGCACA 59.659 36.000 4.05 0.00 42.87 4.57
508 509 5.717491 GCGTTAAATAGTTGCAAATTCGCAC 60.717 40.000 16.96 0.18 42.87 5.34
509 510 4.322274 GCGTTAAATAGTTGCAAATTCGCA 59.678 37.500 16.96 0.00 41.03 5.10
510 511 4.557301 AGCGTTAAATAGTTGCAAATTCGC 59.443 37.500 4.05 11.69 39.21 4.70
511 512 5.567534 ACAGCGTTAAATAGTTGCAAATTCG 59.432 36.000 4.05 2.21 0.00 3.34
512 513 6.362283 ACACAGCGTTAAATAGTTGCAAATTC 59.638 34.615 4.05 0.00 0.00 2.17
513 514 6.143758 CACACAGCGTTAAATAGTTGCAAATT 59.856 34.615 4.05 0.00 0.00 1.82
514 515 5.629020 CACACAGCGTTAAATAGTTGCAAAT 59.371 36.000 4.23 4.23 0.00 2.32
515 516 4.973051 CACACAGCGTTAAATAGTTGCAAA 59.027 37.500 0.00 0.00 0.00 3.68
516 517 4.532276 CACACAGCGTTAAATAGTTGCAA 58.468 39.130 0.00 0.00 0.00 4.08
517 518 3.608241 GCACACAGCGTTAAATAGTTGCA 60.608 43.478 0.00 0.00 0.00 4.08
518 519 2.908626 GCACACAGCGTTAAATAGTTGC 59.091 45.455 0.00 0.00 0.00 4.17
552 553 2.950781 TGTACATGCAGGTGGGAAAAA 58.049 42.857 15.48 0.00 0.00 1.94
553 554 2.666272 TGTACATGCAGGTGGGAAAA 57.334 45.000 15.48 0.00 0.00 2.29
554 555 2.040947 TCATGTACATGCAGGTGGGAAA 59.959 45.455 27.71 6.70 38.65 3.13
555 556 1.632920 TCATGTACATGCAGGTGGGAA 59.367 47.619 27.71 7.41 38.65 3.97
556 557 1.284313 TCATGTACATGCAGGTGGGA 58.716 50.000 27.71 8.10 38.65 4.37
557 558 2.127271 TTCATGTACATGCAGGTGGG 57.873 50.000 27.71 5.20 38.65 4.61
558 559 4.724074 ATTTTCATGTACATGCAGGTGG 57.276 40.909 27.71 5.91 38.65 4.61
559 560 9.454585 CTAATTATTTTCATGTACATGCAGGTG 57.545 33.333 27.71 8.19 38.65 4.00
560 561 8.632679 CCTAATTATTTTCATGTACATGCAGGT 58.367 33.333 27.71 9.77 38.65 4.00
561 562 8.632679 ACCTAATTATTTTCATGTACATGCAGG 58.367 33.333 27.71 20.79 38.65 4.85
562 563 9.454585 CACCTAATTATTTTCATGTACATGCAG 57.545 33.333 27.71 8.06 38.65 4.41
563 564 8.412456 CCACCTAATTATTTTCATGTACATGCA 58.588 33.333 27.71 17.06 38.65 3.96
564 565 7.382218 GCCACCTAATTATTTTCATGTACATGC 59.618 37.037 27.71 8.73 38.65 4.06
565 566 8.632679 AGCCACCTAATTATTTTCATGTACATG 58.367 33.333 26.83 26.83 40.09 3.21
566 567 8.766994 AGCCACCTAATTATTTTCATGTACAT 57.233 30.769 1.41 1.41 0.00 2.29
567 568 8.588290 AAGCCACCTAATTATTTTCATGTACA 57.412 30.769 0.00 0.00 0.00 2.90
568 569 9.301153 CAAAGCCACCTAATTATTTTCATGTAC 57.699 33.333 0.00 0.00 0.00 2.90
569 570 7.978975 GCAAAGCCACCTAATTATTTTCATGTA 59.021 33.333 0.00 0.00 0.00 2.29
570 571 6.818142 GCAAAGCCACCTAATTATTTTCATGT 59.182 34.615 0.00 0.00 0.00 3.21
571 572 7.010738 CAGCAAAGCCACCTAATTATTTTCATG 59.989 37.037 0.00 0.00 0.00 3.07
572 573 7.043565 CAGCAAAGCCACCTAATTATTTTCAT 58.956 34.615 0.00 0.00 0.00 2.57
573 574 6.397272 CAGCAAAGCCACCTAATTATTTTCA 58.603 36.000 0.00 0.00 0.00 2.69
574 575 5.812127 CCAGCAAAGCCACCTAATTATTTTC 59.188 40.000 0.00 0.00 0.00 2.29
575 576 5.338300 CCCAGCAAAGCCACCTAATTATTTT 60.338 40.000 0.00 0.00 0.00 1.82
576 577 4.162131 CCCAGCAAAGCCACCTAATTATTT 59.838 41.667 0.00 0.00 0.00 1.40
577 578 3.706086 CCCAGCAAAGCCACCTAATTATT 59.294 43.478 0.00 0.00 0.00 1.40
578 579 3.299503 CCCAGCAAAGCCACCTAATTAT 58.700 45.455 0.00 0.00 0.00 1.28
579 580 2.733956 CCCAGCAAAGCCACCTAATTA 58.266 47.619 0.00 0.00 0.00 1.40
580 581 1.560505 CCCAGCAAAGCCACCTAATT 58.439 50.000 0.00 0.00 0.00 1.40
581 582 0.972471 GCCCAGCAAAGCCACCTAAT 60.972 55.000 0.00 0.00 0.00 1.73
582 583 1.606313 GCCCAGCAAAGCCACCTAA 60.606 57.895 0.00 0.00 0.00 2.69
583 584 2.035626 GCCCAGCAAAGCCACCTA 59.964 61.111 0.00 0.00 0.00 3.08
589 590 2.426122 GAAGTGTGGCCCAGCAAAGC 62.426 60.000 0.00 0.00 0.00 3.51
590 591 1.662044 GAAGTGTGGCCCAGCAAAG 59.338 57.895 0.00 0.00 0.00 2.77
591 592 2.192861 CGAAGTGTGGCCCAGCAAA 61.193 57.895 0.00 0.00 0.00 3.68
592 593 2.594303 CGAAGTGTGGCCCAGCAA 60.594 61.111 0.00 0.00 0.00 3.91
593 594 4.641645 CCGAAGTGTGGCCCAGCA 62.642 66.667 0.00 0.00 0.00 4.41
595 596 3.953775 ACCCGAAGTGTGGCCCAG 61.954 66.667 0.00 0.00 0.00 4.45
596 597 4.263572 CACCCGAAGTGTGGCCCA 62.264 66.667 0.00 0.00 41.93 5.36
609 610 0.395173 ATTTCGTACATGGGCCACCC 60.395 55.000 9.28 0.00 45.71 4.61
610 611 1.404035 GAATTTCGTACATGGGCCACC 59.596 52.381 9.28 0.00 37.24 4.61
611 612 2.097466 CAGAATTTCGTACATGGGCCAC 59.903 50.000 9.28 0.00 0.00 5.01
612 613 2.364632 CAGAATTTCGTACATGGGCCA 58.635 47.619 9.61 9.61 0.00 5.36
613 614 1.676006 CCAGAATTTCGTACATGGGCC 59.324 52.381 0.00 0.00 0.00 5.80
614 615 1.065551 GCCAGAATTTCGTACATGGGC 59.934 52.381 0.00 0.00 0.00 5.36
615 616 2.643551 AGCCAGAATTTCGTACATGGG 58.356 47.619 0.00 0.00 0.00 4.00
616 617 4.701956 AAAGCCAGAATTTCGTACATGG 57.298 40.909 0.00 0.00 0.00 3.66
637 638 8.996271 GTCCCTTCGTCTATTAGAAAAGAAAAA 58.004 33.333 14.38 1.89 0.00 1.94
638 639 8.152246 TGTCCCTTCGTCTATTAGAAAAGAAAA 58.848 33.333 14.38 2.66 0.00 2.29
639 640 7.673180 TGTCCCTTCGTCTATTAGAAAAGAAA 58.327 34.615 14.38 4.32 0.00 2.52
640 641 7.235935 TGTCCCTTCGTCTATTAGAAAAGAA 57.764 36.000 14.38 10.72 0.00 2.52
641 642 6.845758 TGTCCCTTCGTCTATTAGAAAAGA 57.154 37.500 14.38 5.23 0.00 2.52
642 643 7.900782 TTTGTCCCTTCGTCTATTAGAAAAG 57.099 36.000 0.00 3.12 0.00 2.27
645 646 9.760077 GAATATTTGTCCCTTCGTCTATTAGAA 57.240 33.333 0.00 0.00 0.00 2.10
646 647 8.920174 TGAATATTTGTCCCTTCGTCTATTAGA 58.080 33.333 0.00 0.00 0.00 2.10
647 648 9.197694 CTGAATATTTGTCCCTTCGTCTATTAG 57.802 37.037 0.00 0.00 0.00 1.73
648 649 8.701895 ACTGAATATTTGTCCCTTCGTCTATTA 58.298 33.333 0.00 0.00 0.00 0.98
649 650 7.565680 ACTGAATATTTGTCCCTTCGTCTATT 58.434 34.615 0.00 0.00 0.00 1.73
650 651 7.125792 ACTGAATATTTGTCCCTTCGTCTAT 57.874 36.000 0.00 0.00 0.00 1.98
651 652 6.540438 ACTGAATATTTGTCCCTTCGTCTA 57.460 37.500 0.00 0.00 0.00 2.59
652 653 5.422214 ACTGAATATTTGTCCCTTCGTCT 57.578 39.130 0.00 0.00 0.00 4.18
653 654 5.522824 GGTACTGAATATTTGTCCCTTCGTC 59.477 44.000 0.00 0.00 0.00 4.20
654 655 5.046159 TGGTACTGAATATTTGTCCCTTCGT 60.046 40.000 0.00 0.00 0.00 3.85
655 656 5.293569 GTGGTACTGAATATTTGTCCCTTCG 59.706 44.000 0.00 0.00 0.00 3.79
656 657 5.589050 GGTGGTACTGAATATTTGTCCCTTC 59.411 44.000 0.00 0.00 0.00 3.46
657 658 5.253096 AGGTGGTACTGAATATTTGTCCCTT 59.747 40.000 0.00 0.00 0.00 3.95
658 659 4.788617 AGGTGGTACTGAATATTTGTCCCT 59.211 41.667 0.00 0.00 0.00 4.20
659 660 5.112129 AGGTGGTACTGAATATTTGTCCC 57.888 43.478 0.00 0.00 0.00 4.46
660 661 4.809426 CGAGGTGGTACTGAATATTTGTCC 59.191 45.833 0.00 0.00 0.00 4.02
661 662 5.657474 TCGAGGTGGTACTGAATATTTGTC 58.343 41.667 0.00 0.00 0.00 3.18
662 663 5.670792 TCGAGGTGGTACTGAATATTTGT 57.329 39.130 0.00 0.00 0.00 2.83
663 664 8.141909 TCTATTCGAGGTGGTACTGAATATTTG 58.858 37.037 0.00 0.00 32.76 2.32
664 665 8.246430 TCTATTCGAGGTGGTACTGAATATTT 57.754 34.615 0.00 0.00 32.76 1.40
665 666 7.834881 TCTATTCGAGGTGGTACTGAATATT 57.165 36.000 0.00 0.00 32.76 1.28
666 667 7.834881 TTCTATTCGAGGTGGTACTGAATAT 57.165 36.000 0.00 0.00 32.76 1.28
667 668 7.649533 TTTCTATTCGAGGTGGTACTGAATA 57.350 36.000 0.00 0.00 32.07 1.75
668 669 6.540438 TTTCTATTCGAGGTGGTACTGAAT 57.460 37.500 0.00 0.00 34.03 2.57
669 670 5.988310 TTTCTATTCGAGGTGGTACTGAA 57.012 39.130 0.00 0.00 0.00 3.02
670 671 5.988310 TTTTCTATTCGAGGTGGTACTGA 57.012 39.130 0.00 0.00 0.00 3.41
690 691 5.943416 TCCGTTCACCATCTACATGATTTTT 59.057 36.000 0.00 0.00 32.05 1.94
691 692 5.496556 TCCGTTCACCATCTACATGATTTT 58.503 37.500 0.00 0.00 32.05 1.82
692 693 5.097742 TCCGTTCACCATCTACATGATTT 57.902 39.130 0.00 0.00 32.05 2.17
693 694 4.753516 TCCGTTCACCATCTACATGATT 57.246 40.909 0.00 0.00 32.05 2.57
694 695 4.344968 TCATCCGTTCACCATCTACATGAT 59.655 41.667 0.00 0.00 35.40 2.45
695 696 3.704061 TCATCCGTTCACCATCTACATGA 59.296 43.478 0.00 0.00 30.57 3.07
696 697 4.058721 TCATCCGTTCACCATCTACATG 57.941 45.455 0.00 0.00 0.00 3.21
697 698 4.753516 TTCATCCGTTCACCATCTACAT 57.246 40.909 0.00 0.00 0.00 2.29
698 699 4.545208 TTTCATCCGTTCACCATCTACA 57.455 40.909 0.00 0.00 0.00 2.74
699 700 5.411669 ACTTTTTCATCCGTTCACCATCTAC 59.588 40.000 0.00 0.00 0.00 2.59
700 701 5.556915 ACTTTTTCATCCGTTCACCATCTA 58.443 37.500 0.00 0.00 0.00 1.98
701 702 4.398319 ACTTTTTCATCCGTTCACCATCT 58.602 39.130 0.00 0.00 0.00 2.90
702 703 4.766404 ACTTTTTCATCCGTTCACCATC 57.234 40.909 0.00 0.00 0.00 3.51
703 704 5.068460 TCAAACTTTTTCATCCGTTCACCAT 59.932 36.000 0.00 0.00 0.00 3.55
704 705 4.399618 TCAAACTTTTTCATCCGTTCACCA 59.600 37.500 0.00 0.00 0.00 4.17
705 706 4.927422 TCAAACTTTTTCATCCGTTCACC 58.073 39.130 0.00 0.00 0.00 4.02
706 707 6.262601 TCTTCAAACTTTTTCATCCGTTCAC 58.737 36.000 0.00 0.00 0.00 3.18
707 708 6.443934 TCTTCAAACTTTTTCATCCGTTCA 57.556 33.333 0.00 0.00 0.00 3.18
708 709 7.513041 CGTTTCTTCAAACTTTTTCATCCGTTC 60.513 37.037 0.00 0.00 39.97 3.95
709 710 6.252655 CGTTTCTTCAAACTTTTTCATCCGTT 59.747 34.615 0.00 0.00 39.97 4.44
710 711 5.741982 CGTTTCTTCAAACTTTTTCATCCGT 59.258 36.000 0.00 0.00 39.97 4.69
711 712 5.331532 GCGTTTCTTCAAACTTTTTCATCCG 60.332 40.000 0.00 0.00 39.97 4.18
712 713 5.518487 TGCGTTTCTTCAAACTTTTTCATCC 59.482 36.000 0.00 0.00 39.97 3.51
713 714 6.567769 TGCGTTTCTTCAAACTTTTTCATC 57.432 33.333 0.00 0.00 39.97 2.92
714 715 7.538303 AATGCGTTTCTTCAAACTTTTTCAT 57.462 28.000 0.00 0.00 39.97 2.57
715 716 6.959671 AATGCGTTTCTTCAAACTTTTTCA 57.040 29.167 0.00 0.00 39.97 2.69
716 717 7.744276 ACAAAATGCGTTTCTTCAAACTTTTTC 59.256 29.630 3.96 0.00 39.97 2.29
717 718 7.580600 ACAAAATGCGTTTCTTCAAACTTTTT 58.419 26.923 3.96 0.00 39.97 1.94
718 719 7.127917 ACAAAATGCGTTTCTTCAAACTTTT 57.872 28.000 3.96 0.00 39.97 2.27
719 720 6.720012 ACAAAATGCGTTTCTTCAAACTTT 57.280 29.167 3.96 0.00 39.97 2.66
720 721 6.720012 AACAAAATGCGTTTCTTCAAACTT 57.280 29.167 3.96 0.00 39.97 2.66
721 722 6.720012 AAACAAAATGCGTTTCTTCAAACT 57.280 29.167 3.96 0.00 39.97 2.66
722 723 9.484326 AATAAAACAAAATGCGTTTCTTCAAAC 57.516 25.926 3.96 0.00 35.57 2.93
723 724 9.483062 CAATAAAACAAAATGCGTTTCTTCAAA 57.517 25.926 3.96 0.00 35.57 2.69
724 725 8.119226 CCAATAAAACAAAATGCGTTTCTTCAA 58.881 29.630 3.96 0.00 35.57 2.69
725 726 7.278868 ACCAATAAAACAAAATGCGTTTCTTCA 59.721 29.630 3.96 0.00 35.57 3.02
726 727 7.626446 ACCAATAAAACAAAATGCGTTTCTTC 58.374 30.769 3.96 0.00 35.57 2.87
727 728 7.546778 ACCAATAAAACAAAATGCGTTTCTT 57.453 28.000 3.96 0.00 35.57 2.52
728 729 7.383843 CCTACCAATAAAACAAAATGCGTTTCT 59.616 33.333 3.96 0.00 35.57 2.52
729 730 7.170151 ACCTACCAATAAAACAAAATGCGTTTC 59.830 33.333 3.96 0.00 35.57 2.78
730 731 6.987404 ACCTACCAATAAAACAAAATGCGTTT 59.013 30.769 0.00 0.00 38.19 3.60
731 732 6.517605 ACCTACCAATAAAACAAAATGCGTT 58.482 32.000 0.00 0.00 0.00 4.84
732 733 6.091718 ACCTACCAATAAAACAAAATGCGT 57.908 33.333 0.00 0.00 0.00 5.24
733 734 6.750039 CCTACCTACCAATAAAACAAAATGCG 59.250 38.462 0.00 0.00 0.00 4.73
734 735 7.608153 ACCTACCTACCAATAAAACAAAATGC 58.392 34.615 0.00 0.00 0.00 3.56
836 837 8.836413 GCAGATCTATATCTATACCTCTGTGTC 58.164 40.741 0.00 0.00 40.65 3.67
840 841 9.203421 CGTAGCAGATCTATATCTATACCTCTG 57.797 40.741 0.00 0.00 40.65 3.35
844 845 9.426837 CCTACGTAGCAGATCTATATCTATACC 57.573 40.741 17.41 0.00 40.65 2.73
845 846 9.985730 ACCTACGTAGCAGATCTATATCTATAC 57.014 37.037 17.41 0.00 40.65 1.47
848 849 7.849160 ACACCTACGTAGCAGATCTATATCTA 58.151 38.462 17.41 0.00 40.65 1.98
849 850 6.713276 ACACCTACGTAGCAGATCTATATCT 58.287 40.000 17.41 0.00 43.54 1.98
850 851 6.988622 ACACCTACGTAGCAGATCTATATC 57.011 41.667 17.41 0.00 0.00 1.63
862 863 5.545588 TCTATACCTGCTACACCTACGTAG 58.454 45.833 15.92 15.92 41.56 3.51
863 864 5.551305 TCTATACCTGCTACACCTACGTA 57.449 43.478 0.00 0.00 0.00 3.57
864 865 4.428294 TCTATACCTGCTACACCTACGT 57.572 45.455 0.00 0.00 0.00 3.57
865 866 8.202811 TCTATATCTATACCTGCTACACCTACG 58.797 40.741 0.00 0.00 0.00 3.51
868 869 9.009675 AGATCTATATCTATACCTGCTACACCT 57.990 37.037 0.00 0.00 40.82 4.00
869 870 9.062524 CAGATCTATATCTATACCTGCTACACC 57.937 40.741 0.00 0.00 40.65 4.16
870 871 8.564574 GCAGATCTATATCTATACCTGCTACAC 58.435 40.741 0.00 0.00 40.65 2.90
871 872 8.684386 GCAGATCTATATCTATACCTGCTACA 57.316 38.462 0.00 0.00 40.65 2.74
875 876 7.442969 ACGTAGCAGATCTATATCTATACCTGC 59.557 40.741 0.00 0.00 40.65 4.85
876 877 8.896320 ACGTAGCAGATCTATATCTATACCTG 57.104 38.462 0.00 0.00 40.65 4.00
900 901 5.927115 GGAATGCTACACCTACATAGCTTAC 59.073 44.000 0.00 0.00 43.54 2.34
901 902 5.839063 AGGAATGCTACACCTACATAGCTTA 59.161 40.000 0.00 0.00 43.54 3.09
902 903 4.656112 AGGAATGCTACACCTACATAGCTT 59.344 41.667 0.00 0.00 43.54 3.74
903 904 4.227197 AGGAATGCTACACCTACATAGCT 58.773 43.478 5.00 0.00 43.54 3.32
904 905 4.561105 GAGGAATGCTACACCTACATAGC 58.439 47.826 0.00 0.00 43.46 2.97
905 906 4.835615 AGGAGGAATGCTACACCTACATAG 59.164 45.833 0.00 0.00 37.13 2.23
906 907 4.816126 AGGAGGAATGCTACACCTACATA 58.184 43.478 0.00 0.00 37.13 2.29
907 908 3.658725 AGGAGGAATGCTACACCTACAT 58.341 45.455 0.00 0.00 37.13 2.29
908 909 3.116096 AGGAGGAATGCTACACCTACA 57.884 47.619 0.00 0.00 37.13 2.74
1401 1414 4.408821 TGGCCGTGGCTGATGTCC 62.409 66.667 11.25 0.00 41.60 4.02
1566 1579 1.153745 GCCGATGAACTCTGCGAGT 60.154 57.895 5.54 5.54 45.64 4.18
1572 1585 2.125512 GCCGTGCCGATGAACTCT 60.126 61.111 0.00 0.00 0.00 3.24
1900 1913 1.668101 GAGATCCGCACGGTCTCCTT 61.668 60.000 21.14 4.18 36.92 3.36
1951 1964 1.073199 CTGTCTTCCCCTTGCCGTT 59.927 57.895 0.00 0.00 0.00 4.44
1968 1981 1.079819 CCTGTTGCCGACGATGACT 60.080 57.895 0.00 0.00 0.00 3.41
2038 2051 1.067706 TGCATGGGCTTTCATTTCGTG 60.068 47.619 0.00 0.00 41.91 4.35
2046 2062 1.517694 CGTGCATGCATGGGCTTTC 60.518 57.895 28.79 10.92 41.91 2.62
2106 2142 8.753497 AAGATGGGAAAAAGATGGAGTAATAC 57.247 34.615 0.00 0.00 0.00 1.89
2137 2173 6.990939 ACTAGGACAAGAAGAAAGTTGTTACC 59.009 38.462 0.00 0.00 37.02 2.85
2140 2176 9.057089 CATAACTAGGACAAGAAGAAAGTTGTT 57.943 33.333 0.00 0.00 37.02 2.83
2357 2685 6.691508 CGATGAGATGGGTGATATAAAGTGA 58.308 40.000 0.00 0.00 0.00 3.41
2392 2779 3.827876 TGAGTGACATTGGCATGTGAAAT 59.172 39.130 0.00 0.00 44.22 2.17
2691 3087 0.179004 AGTTTTGGATGACCACCGCA 60.179 50.000 0.00 0.00 46.80 5.69
3151 3547 6.680810 CACAAACAACATGACACCATCTTAT 58.319 36.000 0.00 0.00 0.00 1.73
3182 3578 5.476599 TGGTTCCATGTTCCAAGTTAATCAG 59.523 40.000 0.00 0.00 0.00 2.90
3389 7753 7.546667 GCTTGATTGTTGGTTACATTCATCATT 59.453 33.333 0.00 0.00 43.11 2.57
3440 7805 3.314388 CTGAACGCGCCCTTCTTGC 62.314 63.158 5.73 0.00 0.00 4.01
3492 7858 2.030805 GCAGCTGTTTGTTAGGAGTTGG 60.031 50.000 16.64 0.00 0.00 3.77
3521 7887 4.692625 AGTTCCAAACTGATGAACTGATCG 59.307 41.667 3.53 0.00 45.10 3.69
3562 7936 5.509498 TGCTATTTTCTAGCCCAAGAATGT 58.491 37.500 2.07 0.00 39.69 2.71
3587 7961 3.262405 ACGGCTCCTGAAGGTGTATTTTA 59.738 43.478 0.00 0.00 36.34 1.52
3643 8017 7.961326 ATGTTTTAAAATCCTCTGGCTATGT 57.039 32.000 3.52 0.00 0.00 2.29
3644 8018 8.078596 GCTATGTTTTAAAATCCTCTGGCTATG 58.921 37.037 3.52 0.00 0.00 2.23
3645 8019 7.231519 GGCTATGTTTTAAAATCCTCTGGCTAT 59.768 37.037 3.52 0.00 0.00 2.97
3646 8020 6.546034 GGCTATGTTTTAAAATCCTCTGGCTA 59.454 38.462 3.52 0.00 0.00 3.93
3647 8021 5.360999 GGCTATGTTTTAAAATCCTCTGGCT 59.639 40.000 3.52 0.00 0.00 4.75
3648 8022 5.451937 GGGCTATGTTTTAAAATCCTCTGGC 60.452 44.000 3.52 5.53 0.00 4.85
3649 8023 5.221048 CGGGCTATGTTTTAAAATCCTCTGG 60.221 44.000 3.52 0.00 0.00 3.86
3650 8024 5.588648 TCGGGCTATGTTTTAAAATCCTCTG 59.411 40.000 3.52 0.00 0.00 3.35
3651 8025 5.751586 TCGGGCTATGTTTTAAAATCCTCT 58.248 37.500 3.52 0.00 0.00 3.69
3652 8026 6.095021 AGTTCGGGCTATGTTTTAAAATCCTC 59.905 38.462 3.52 0.00 0.00 3.71
3653 8027 5.949952 AGTTCGGGCTATGTTTTAAAATCCT 59.050 36.000 3.52 0.00 0.00 3.24
3654 8028 6.033966 CAGTTCGGGCTATGTTTTAAAATCC 58.966 40.000 3.52 1.61 0.00 3.01
3655 8029 6.617879 ACAGTTCGGGCTATGTTTTAAAATC 58.382 36.000 3.52 0.00 0.00 2.17
3656 8030 6.584185 ACAGTTCGGGCTATGTTTTAAAAT 57.416 33.333 3.52 0.00 0.00 1.82
3657 8031 6.149807 CCTACAGTTCGGGCTATGTTTTAAAA 59.850 38.462 0.00 0.00 0.00 1.52
3658 8032 5.644636 CCTACAGTTCGGGCTATGTTTTAAA 59.355 40.000 0.00 0.00 0.00 1.52
3659 8033 5.180271 CCTACAGTTCGGGCTATGTTTTAA 58.820 41.667 0.00 0.00 0.00 1.52
3660 8034 4.383335 CCCTACAGTTCGGGCTATGTTTTA 60.383 45.833 0.00 0.00 32.83 1.52
3661 8035 3.606687 CCTACAGTTCGGGCTATGTTTT 58.393 45.455 0.00 0.00 0.00 2.43
3662 8036 2.093128 CCCTACAGTTCGGGCTATGTTT 60.093 50.000 0.00 0.00 32.83 2.83
3663 8037 1.485066 CCCTACAGTTCGGGCTATGTT 59.515 52.381 0.00 0.00 32.83 2.71
3678 8052 5.690857 GTCTTCTGTTACGCATTATCCCTAC 59.309 44.000 0.00 0.00 0.00 3.18
3684 8058 4.875536 TGCATGTCTTCTGTTACGCATTAT 59.124 37.500 0.00 0.00 0.00 1.28
3740 8114 1.677552 GACGGGGGTAGCATATGGG 59.322 63.158 4.56 0.00 0.00 4.00
3741 8115 1.677552 GGACGGGGGTAGCATATGG 59.322 63.158 4.56 0.00 0.00 2.74
3742 8116 1.677552 GGGACGGGGGTAGCATATG 59.322 63.158 0.00 0.00 0.00 1.78
3743 8117 1.538135 GGGGACGGGGGTAGCATAT 60.538 63.158 0.00 0.00 0.00 1.78
3744 8118 2.122725 GGGGACGGGGGTAGCATA 60.123 66.667 0.00 0.00 0.00 3.14
3769 8143 4.180946 CCGTGTCGCCTCCGAGAG 62.181 72.222 0.00 0.00 45.38 3.20
3774 8148 4.754667 GTTCCCCGTGTCGCCTCC 62.755 72.222 0.00 0.00 0.00 4.30
3775 8149 4.754667 GGTTCCCCGTGTCGCCTC 62.755 72.222 0.00 0.00 0.00 4.70
3810 8184 4.475444 TAGGGTGGAGGAGGGCCG 62.475 72.222 0.00 0.00 39.96 6.13
3811 8185 2.768769 GTAGGGTGGAGGAGGGCC 60.769 72.222 0.00 0.00 0.00 5.80
3812 8186 2.768769 GGTAGGGTGGAGGAGGGC 60.769 72.222 0.00 0.00 0.00 5.19
3813 8187 2.040779 GGGTAGGGTGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
3814 8188 1.075151 GAGGGTAGGGTGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
3815 8189 1.075151 GGAGGGTAGGGTGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
3816 8190 2.643808 GGGAGGGTAGGGTGGAGGA 61.644 68.421 0.00 0.00 0.00 3.71
3817 8191 2.040779 GGGAGGGTAGGGTGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
3818 8192 2.040779 GGGGAGGGTAGGGTGGAG 60.041 72.222 0.00 0.00 0.00 3.86
3819 8193 3.702623 GGGGGAGGGTAGGGTGGA 61.703 72.222 0.00 0.00 0.00 4.02
3820 8194 3.707189 AGGGGGAGGGTAGGGTGG 61.707 72.222 0.00 0.00 0.00 4.61
3821 8195 2.040779 GAGGGGGAGGGTAGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
3822 8196 3.763757 CGAGGGGGAGGGTAGGGT 61.764 72.222 0.00 0.00 0.00 4.34
3853 8227 2.750237 GGCTTTGCCCGGTAGTGG 60.750 66.667 0.00 0.00 44.06 4.00
3893 8267 1.523524 CCATGCCATGGGAAAAGCC 59.476 57.895 16.33 0.00 46.86 4.35
3902 8276 1.030457 GAAGGAAGAGCCATGCCATG 58.970 55.000 0.00 0.00 40.02 3.66
3903 8277 0.924823 AGAAGGAAGAGCCATGCCAT 59.075 50.000 0.00 0.00 40.02 4.40
3904 8278 0.700564 AAGAAGGAAGAGCCATGCCA 59.299 50.000 0.00 0.00 40.02 4.92
3905 8279 1.387539 GAAGAAGGAAGAGCCATGCC 58.612 55.000 0.00 0.00 40.02 4.40
3906 8280 1.012841 CGAAGAAGGAAGAGCCATGC 58.987 55.000 0.00 0.00 40.02 4.06
3907 8281 2.275318 GACGAAGAAGGAAGAGCCATG 58.725 52.381 0.00 0.00 40.02 3.66
3908 8282 1.134965 CGACGAAGAAGGAAGAGCCAT 60.135 52.381 0.00 0.00 40.02 4.40
3909 8283 0.243907 CGACGAAGAAGGAAGAGCCA 59.756 55.000 0.00 0.00 40.02 4.75
3910 8284 0.244178 ACGACGAAGAAGGAAGAGCC 59.756 55.000 0.00 0.00 0.00 4.70
3911 8285 1.341606 CACGACGAAGAAGGAAGAGC 58.658 55.000 0.00 0.00 0.00 4.09
3912 8286 1.983972 CCACGACGAAGAAGGAAGAG 58.016 55.000 0.00 0.00 0.00 2.85
3913 8287 0.038526 GCCACGACGAAGAAGGAAGA 60.039 55.000 0.00 0.00 0.00 2.87
3914 8288 1.344942 CGCCACGACGAAGAAGGAAG 61.345 60.000 0.00 0.00 34.06 3.46
3915 8289 1.372499 CGCCACGACGAAGAAGGAA 60.372 57.895 0.00 0.00 34.06 3.36
3916 8290 2.257371 CGCCACGACGAAGAAGGA 59.743 61.111 0.00 0.00 34.06 3.36
3917 8291 2.809601 CCGCCACGACGAAGAAGG 60.810 66.667 0.00 0.00 34.06 3.46
3918 8292 3.479269 GCCGCCACGACGAAGAAG 61.479 66.667 0.00 0.00 34.06 2.85
3946 8320 2.124570 CTCCACCAAGCCCATCGG 60.125 66.667 0.00 0.00 0.00 4.18
3947 8321 2.825836 GCTCCACCAAGCCCATCG 60.826 66.667 0.00 0.00 36.22 3.84
3948 8322 2.825836 CGCTCCACCAAGCCCATC 60.826 66.667 0.00 0.00 39.17 3.51
3949 8323 3.329889 TCGCTCCACCAAGCCCAT 61.330 61.111 0.00 0.00 39.17 4.00
3950 8324 4.329545 GTCGCTCCACCAAGCCCA 62.330 66.667 0.00 0.00 39.17 5.36
3954 8328 2.357517 AAGCGTCGCTCCACCAAG 60.358 61.111 21.98 0.00 38.25 3.61
3955 8329 2.357034 GAAGCGTCGCTCCACCAA 60.357 61.111 21.98 0.00 38.25 3.67
3956 8330 2.652382 TTTGAAGCGTCGCTCCACCA 62.652 55.000 21.98 13.11 38.25 4.17
3957 8331 1.901650 CTTTGAAGCGTCGCTCCACC 61.902 60.000 21.98 10.66 38.25 4.61
3958 8332 1.222115 ACTTTGAAGCGTCGCTCCAC 61.222 55.000 21.98 15.06 38.25 4.02
3959 8333 0.531974 AACTTTGAAGCGTCGCTCCA 60.532 50.000 21.98 12.19 38.25 3.86
3960 8334 0.164002 GAACTTTGAAGCGTCGCTCC 59.836 55.000 21.98 8.80 38.25 4.70
3961 8335 0.164002 GGAACTTTGAAGCGTCGCTC 59.836 55.000 21.98 14.25 38.25 5.03
3962 8336 1.557443 CGGAACTTTGAAGCGTCGCT 61.557 55.000 15.47 15.47 42.56 4.93
3963 8337 1.154654 CGGAACTTTGAAGCGTCGC 60.155 57.895 9.80 9.80 0.00 5.19
3964 8338 1.491563 CCGGAACTTTGAAGCGTCG 59.508 57.895 0.00 0.00 0.00 5.12
3965 8339 1.206831 GCCGGAACTTTGAAGCGTC 59.793 57.895 5.05 0.00 0.00 5.19
3966 8340 1.507141 CTGCCGGAACTTTGAAGCGT 61.507 55.000 5.05 0.00 0.00 5.07
3967 8341 1.207593 CTGCCGGAACTTTGAAGCG 59.792 57.895 5.05 0.00 0.00 4.68
3968 8342 1.081175 GCTGCCGGAACTTTGAAGC 60.081 57.895 5.05 0.00 0.00 3.86
3969 8343 1.207593 CGCTGCCGGAACTTTGAAG 59.792 57.895 5.05 0.00 0.00 3.02
3970 8344 3.339731 CGCTGCCGGAACTTTGAA 58.660 55.556 5.05 0.00 0.00 2.69
3989 8363 3.842923 ATCCCGCCGCTGAGTGAG 61.843 66.667 0.00 0.00 0.00 3.51
3990 8364 4.147449 CATCCCGCCGCTGAGTGA 62.147 66.667 0.00 0.00 0.00 3.41
3993 8367 4.598894 CTCCATCCCGCCGCTGAG 62.599 72.222 0.00 0.00 0.00 3.35
4001 8375 3.866582 GACAGGCCCTCCATCCCG 61.867 72.222 0.00 0.00 33.74 5.14
4002 8376 3.493303 GGACAGGCCCTCCATCCC 61.493 72.222 11.59 0.00 35.12 3.85
4022 8396 3.376078 TAGGCGACACCACCGGAC 61.376 66.667 9.46 0.00 43.14 4.79
4023 8397 3.376078 GTAGGCGACACCACCGGA 61.376 66.667 9.46 0.00 43.14 5.14
4024 8398 3.687102 TGTAGGCGACACCACCGG 61.687 66.667 0.00 0.00 43.14 5.28
4059 8433 5.488192 AGATCCAATCTAGGGTCAAGAGCC 61.488 50.000 10.22 10.22 41.45 4.70
4060 8434 3.645687 AGATCCAATCTAGGGTCAAGAGC 59.354 47.826 0.00 0.00 41.45 4.09
4061 8435 4.040217 CCAGATCCAATCTAGGGTCAAGAG 59.960 50.000 0.00 0.00 41.45 2.85
4062 8436 3.969976 CCAGATCCAATCTAGGGTCAAGA 59.030 47.826 0.00 0.00 41.45 3.02
4063 8437 3.072184 CCCAGATCCAATCTAGGGTCAAG 59.928 52.174 12.58 0.00 41.45 3.02
4064 8438 3.048600 CCCAGATCCAATCTAGGGTCAA 58.951 50.000 12.58 0.00 41.45 3.18
4065 8439 2.694397 CCCAGATCCAATCTAGGGTCA 58.306 52.381 12.58 0.00 41.45 4.02
4067 8441 2.897823 ACCCAGATCCAATCTAGGGT 57.102 50.000 17.33 17.33 46.66 4.34
4068 8442 1.701847 CCACCCAGATCCAATCTAGGG 59.298 57.143 16.46 16.46 41.73 3.53
4069 8443 2.105477 CACCACCCAGATCCAATCTAGG 59.895 54.545 0.58 0.58 42.89 3.02
4070 8444 2.486191 GCACCACCCAGATCCAATCTAG 60.486 54.545 0.00 0.00 37.58 2.43
4071 8445 1.490490 GCACCACCCAGATCCAATCTA 59.510 52.381 0.00 0.00 37.58 1.98
4072 8446 0.257039 GCACCACCCAGATCCAATCT 59.743 55.000 0.00 0.00 41.15 2.40
4073 8447 0.257039 AGCACCACCCAGATCCAATC 59.743 55.000 0.00 0.00 0.00 2.67
4074 8448 0.257039 GAGCACCACCCAGATCCAAT 59.743 55.000 0.00 0.00 0.00 3.16
4075 8449 0.842030 AGAGCACCACCCAGATCCAA 60.842 55.000 0.00 0.00 0.00 3.53
4076 8450 1.229625 AGAGCACCACCCAGATCCA 60.230 57.895 0.00 0.00 0.00 3.41
4077 8451 1.222936 CAGAGCACCACCCAGATCC 59.777 63.158 0.00 0.00 0.00 3.36
4078 8452 1.222936 CCAGAGCACCACCCAGATC 59.777 63.158 0.00 0.00 0.00 2.75
4079 8453 2.976490 GCCAGAGCACCACCCAGAT 61.976 63.158 0.00 0.00 39.53 2.90
4080 8454 3.640407 GCCAGAGCACCACCCAGA 61.640 66.667 0.00 0.00 39.53 3.86
4081 8455 3.957586 TGCCAGAGCACCACCCAG 61.958 66.667 0.00 0.00 46.52 4.45
4090 8464 2.516460 CCAGAGCCATGCCAGAGC 60.516 66.667 0.00 0.00 40.48 4.09
4091 8465 2.516460 GCCAGAGCCATGCCAGAG 60.516 66.667 0.00 0.00 0.00 3.35
4092 8466 3.013327 AGCCAGAGCCATGCCAGA 61.013 61.111 0.00 0.00 41.25 3.86
4093 8467 2.829003 CAGCCAGAGCCATGCCAG 60.829 66.667 0.00 0.00 41.25 4.85
4101 8475 2.436292 CTGACAGGCAGCCAGAGC 60.436 66.667 15.80 4.37 37.90 4.09
4102 8476 2.268280 CCTGACAGGCAGCCAGAG 59.732 66.667 15.80 5.54 43.50 3.35
4123 8497 4.148825 ATGAGACTCGCCGCCACC 62.149 66.667 0.00 0.00 0.00 4.61
4124 8498 2.887568 CATGAGACTCGCCGCCAC 60.888 66.667 0.00 0.00 0.00 5.01
4125 8499 4.147449 CCATGAGACTCGCCGCCA 62.147 66.667 0.00 0.00 0.00 5.69
4128 8502 2.859273 AAAGGCCATGAGACTCGCCG 62.859 60.000 5.01 0.00 46.36 6.46
4129 8503 1.078143 AAAGGCCATGAGACTCGCC 60.078 57.895 5.01 10.89 41.96 5.54
4130 8504 1.372087 CCAAAGGCCATGAGACTCGC 61.372 60.000 5.01 0.00 0.00 5.03
4131 8505 0.250234 TCCAAAGGCCATGAGACTCG 59.750 55.000 5.01 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.