Multiple sequence alignment - TraesCS6B01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G374900 chr6B 100.000 2443 0 0 1 2443 648434873 648437315 0.000000e+00 4512
1 TraesCS6B01G374900 chr6B 95.248 1010 47 1 1435 2443 543279426 543280435 0.000000e+00 1598
2 TraesCS6B01G374900 chr6B 89.521 1002 90 12 7 997 103926067 103927064 0.000000e+00 1254
3 TraesCS6B01G374900 chr6B 89.364 1006 93 11 1 996 492411505 492412506 0.000000e+00 1253
4 TraesCS6B01G374900 chr6B 88.569 1006 102 12 7 1003 499357004 499356003 0.000000e+00 1208
5 TraesCS6B01G374900 chr5D 95.678 1018 41 3 1428 2443 232261229 232260213 0.000000e+00 1633
6 TraesCS6B01G374900 chr2B 95.455 1012 44 2 1434 2443 390271502 390270491 0.000000e+00 1613
7 TraesCS6B01G374900 chr2B 94.857 1011 49 3 1434 2443 325608982 325607974 0.000000e+00 1576
8 TraesCS6B01G374900 chr2D 95.252 1011 46 2 1435 2443 43065761 43064751 0.000000e+00 1600
9 TraesCS6B01G374900 chr3B 94.955 1011 47 4 1435 2443 51427623 51426615 0.000000e+00 1581
10 TraesCS6B01G374900 chr3B 91.191 999 76 8 7 996 500640794 500639799 0.000000e+00 1347
11 TraesCS6B01G374900 chr7B 94.862 1012 50 2 1434 2443 686688557 686687546 0.000000e+00 1580
12 TraesCS6B01G374900 chr5B 94.763 1012 50 3 1435 2443 272586459 272585448 0.000000e+00 1572
13 TraesCS6B01G374900 chr5B 92.727 440 28 3 999 1434 44357703 44358142 1.230000e-177 632
14 TraesCS6B01G374900 chr4B 94.675 1014 52 2 1431 2443 163828075 163827063 0.000000e+00 1572
15 TraesCS6B01G374900 chr4B 89.211 1001 94 9 7 996 64829140 64828143 0.000000e+00 1238
16 TraesCS6B01G374900 chr4B 89.211 1001 94 9 7 996 65166710 65165713 0.000000e+00 1238
17 TraesCS6B01G374900 chr3D 94.917 787 33 4 220 999 356756200 356756986 0.000000e+00 1225
18 TraesCS6B01G374900 chr3D 82.005 439 62 7 999 1432 485062152 485061726 8.310000e-95 357
19 TraesCS6B01G374900 chr6A 88.878 998 95 9 7 996 110746650 110745661 0.000000e+00 1214
20 TraesCS6B01G374900 chr1D 88.282 1007 102 12 1 996 448962275 448961274 0.000000e+00 1192
21 TraesCS6B01G374900 chr4D 88.131 337 28 11 1 331 309123275 309122945 8.190000e-105 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G374900 chr6B 648434873 648437315 2442 False 4512 4512 100.000 1 2443 1 chr6B.!!$F4 2442
1 TraesCS6B01G374900 chr6B 543279426 543280435 1009 False 1598 1598 95.248 1435 2443 1 chr6B.!!$F3 1008
2 TraesCS6B01G374900 chr6B 103926067 103927064 997 False 1254 1254 89.521 7 997 1 chr6B.!!$F1 990
3 TraesCS6B01G374900 chr6B 492411505 492412506 1001 False 1253 1253 89.364 1 996 1 chr6B.!!$F2 995
4 TraesCS6B01G374900 chr6B 499356003 499357004 1001 True 1208 1208 88.569 7 1003 1 chr6B.!!$R1 996
5 TraesCS6B01G374900 chr5D 232260213 232261229 1016 True 1633 1633 95.678 1428 2443 1 chr5D.!!$R1 1015
6 TraesCS6B01G374900 chr2B 390270491 390271502 1011 True 1613 1613 95.455 1434 2443 1 chr2B.!!$R2 1009
7 TraesCS6B01G374900 chr2B 325607974 325608982 1008 True 1576 1576 94.857 1434 2443 1 chr2B.!!$R1 1009
8 TraesCS6B01G374900 chr2D 43064751 43065761 1010 True 1600 1600 95.252 1435 2443 1 chr2D.!!$R1 1008
9 TraesCS6B01G374900 chr3B 51426615 51427623 1008 True 1581 1581 94.955 1435 2443 1 chr3B.!!$R1 1008
10 TraesCS6B01G374900 chr3B 500639799 500640794 995 True 1347 1347 91.191 7 996 1 chr3B.!!$R2 989
11 TraesCS6B01G374900 chr7B 686687546 686688557 1011 True 1580 1580 94.862 1434 2443 1 chr7B.!!$R1 1009
12 TraesCS6B01G374900 chr5B 272585448 272586459 1011 True 1572 1572 94.763 1435 2443 1 chr5B.!!$R1 1008
13 TraesCS6B01G374900 chr4B 163827063 163828075 1012 True 1572 1572 94.675 1431 2443 1 chr4B.!!$R3 1012
14 TraesCS6B01G374900 chr4B 64828143 64829140 997 True 1238 1238 89.211 7 996 1 chr4B.!!$R1 989
15 TraesCS6B01G374900 chr4B 65165713 65166710 997 True 1238 1238 89.211 7 996 1 chr4B.!!$R2 989
16 TraesCS6B01G374900 chr3D 356756200 356756986 786 False 1225 1225 94.917 220 999 1 chr3D.!!$F1 779
17 TraesCS6B01G374900 chr6A 110745661 110746650 989 True 1214 1214 88.878 7 996 1 chr6A.!!$R1 989
18 TraesCS6B01G374900 chr1D 448961274 448962275 1001 True 1192 1192 88.282 1 996 1 chr1D.!!$R1 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 748 0.036765 CGGATCCAAAACCCGACTCA 60.037 55.0 13.41 0.0 45.58 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 2110 0.741221 GAAGAAGTGCTACGCCAGGG 60.741 60.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 0.469331 TATAGACACCGAGGGGGCTG 60.469 60.000 10.63 0.00 40.62 4.85
72 78 7.708752 GGTTTTACAGAGAAGGAGATCTACATG 59.291 40.741 7.93 0.46 0.00 3.21
164 171 7.397476 TCTTGTATCTTCATAGTCCAACAGTCT 59.603 37.037 0.00 0.00 0.00 3.24
246 253 1.005450 AGTTTCACCATGGGCCGTTAT 59.995 47.619 18.09 0.00 0.00 1.89
287 295 2.156098 GTTCATTACGGGCCAGTTCAA 58.844 47.619 15.51 3.40 0.00 2.69
350 359 1.079127 CCGAAAGACGTCATGGGCT 60.079 57.895 19.50 0.00 40.78 5.19
395 405 3.559811 CGGGCTGGAATCATATTGGATGA 60.560 47.826 0.00 0.00 0.00 2.92
421 431 0.464036 TGACGCTACTGGGCCTAATG 59.536 55.000 4.53 0.00 0.00 1.90
505 516 2.381752 AATAGGCTTTACATGGGCCC 57.618 50.000 17.59 17.59 46.31 5.80
520 536 1.257750 GGCCCACCATCTTTTGACCC 61.258 60.000 0.00 0.00 35.26 4.46
584 600 2.307309 CGTGCCACGTGTCGATGTT 61.307 57.895 15.65 0.00 36.74 2.71
685 701 6.432783 TGATGATTTTACACGTGGAAAATCCT 59.567 34.615 45.56 41.21 45.35 3.24
730 746 2.368591 TCGGATCCAAAACCCGACT 58.631 52.632 13.41 0.00 46.17 4.18
732 748 0.036765 CGGATCCAAAACCCGACTCA 60.037 55.000 13.41 0.00 45.58 3.41
806 822 0.810031 AAAGCACTTCTGTGACGCGT 60.810 50.000 13.85 13.85 46.55 6.01
812 828 1.526887 ACTTCTGTGACGCGTGATTTG 59.473 47.619 20.70 2.43 0.00 2.32
1005 1023 3.742433 TTTTTGTAGTGCACAATGGGG 57.258 42.857 21.04 0.00 46.38 4.96
1006 1024 1.626686 TTTGTAGTGCACAATGGGGG 58.373 50.000 21.04 0.00 46.38 5.40
1007 1025 0.774276 TTGTAGTGCACAATGGGGGA 59.226 50.000 21.04 0.00 42.29 4.81
1008 1026 0.037590 TGTAGTGCACAATGGGGGAC 59.962 55.000 21.04 4.18 32.95 4.46
1009 1027 0.328258 GTAGTGCACAATGGGGGACT 59.672 55.000 21.04 0.72 39.18 3.85
1010 1028 0.618458 TAGTGCACAATGGGGGACTC 59.382 55.000 21.04 0.00 36.97 3.36
1011 1029 1.074775 GTGCACAATGGGGGACTCA 59.925 57.895 13.17 0.00 0.00 3.41
1012 1030 0.962356 GTGCACAATGGGGGACTCAG 60.962 60.000 13.17 0.00 0.00 3.35
1013 1031 1.379044 GCACAATGGGGGACTCAGG 60.379 63.158 0.00 0.00 0.00 3.86
1014 1032 1.852157 GCACAATGGGGGACTCAGGA 61.852 60.000 0.00 0.00 0.00 3.86
1015 1033 0.698238 CACAATGGGGGACTCAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
1016 1034 0.698818 ACAATGGGGGACTCAGGAAC 59.301 55.000 0.00 0.00 0.00 3.62
1017 1035 0.034089 CAATGGGGGACTCAGGAACC 60.034 60.000 0.00 0.00 0.00 3.62
1018 1036 0.477597 AATGGGGGACTCAGGAACCA 60.478 55.000 0.00 0.00 0.00 3.67
1019 1037 1.208165 ATGGGGGACTCAGGAACCAC 61.208 60.000 0.00 0.00 0.00 4.16
1020 1038 2.663196 GGGGACTCAGGAACCACG 59.337 66.667 0.00 0.00 0.00 4.94
1021 1039 2.214920 GGGGACTCAGGAACCACGT 61.215 63.158 0.00 0.00 0.00 4.49
1022 1040 1.752833 GGGACTCAGGAACCACGTT 59.247 57.895 0.00 0.00 0.00 3.99
1023 1041 0.108019 GGGACTCAGGAACCACGTTT 59.892 55.000 0.00 0.00 0.00 3.60
1024 1042 1.476291 GGGACTCAGGAACCACGTTTT 60.476 52.381 0.00 0.00 0.00 2.43
1025 1043 2.294979 GGACTCAGGAACCACGTTTTT 58.705 47.619 0.00 0.00 0.00 1.94
1026 1044 2.032924 GGACTCAGGAACCACGTTTTTG 59.967 50.000 0.00 0.00 0.00 2.44
1027 1045 2.021457 ACTCAGGAACCACGTTTTTGG 58.979 47.619 0.00 0.00 43.04 3.28
1028 1046 2.294074 CTCAGGAACCACGTTTTTGGA 58.706 47.619 0.00 0.00 39.24 3.53
1029 1047 2.685897 CTCAGGAACCACGTTTTTGGAA 59.314 45.455 0.00 0.00 39.24 3.53
1030 1048 2.685897 TCAGGAACCACGTTTTTGGAAG 59.314 45.455 0.00 0.00 39.24 3.46
1031 1049 2.028876 AGGAACCACGTTTTTGGAAGG 58.971 47.619 0.00 0.00 39.24 3.46
1032 1050 2.025898 GGAACCACGTTTTTGGAAGGA 58.974 47.619 0.00 0.00 39.24 3.36
1033 1051 2.626266 GGAACCACGTTTTTGGAAGGAT 59.374 45.455 0.00 0.00 39.24 3.24
1034 1052 3.069016 GGAACCACGTTTTTGGAAGGATT 59.931 43.478 0.00 0.00 39.24 3.01
1035 1053 4.442332 GGAACCACGTTTTTGGAAGGATTT 60.442 41.667 0.00 0.00 39.24 2.17
1036 1054 4.316205 ACCACGTTTTTGGAAGGATTTC 57.684 40.909 0.00 0.00 39.24 2.17
1037 1055 3.702045 ACCACGTTTTTGGAAGGATTTCA 59.298 39.130 0.00 0.00 39.24 2.69
1038 1056 4.160626 ACCACGTTTTTGGAAGGATTTCAA 59.839 37.500 0.00 0.00 39.24 2.69
1039 1057 4.744631 CCACGTTTTTGGAAGGATTTCAAG 59.255 41.667 0.00 0.00 39.24 3.02
1040 1058 4.744631 CACGTTTTTGGAAGGATTTCAAGG 59.255 41.667 0.00 0.00 34.90 3.61
1041 1059 4.647399 ACGTTTTTGGAAGGATTTCAAGGA 59.353 37.500 0.00 0.00 34.90 3.36
1042 1060 5.128008 ACGTTTTTGGAAGGATTTCAAGGAA 59.872 36.000 0.00 0.00 34.90 3.36
1043 1061 6.045955 CGTTTTTGGAAGGATTTCAAGGAAA 58.954 36.000 0.00 0.00 35.94 3.13
1044 1062 6.536941 CGTTTTTGGAAGGATTTCAAGGAAAA 59.463 34.615 0.00 0.00 35.11 2.29
1045 1063 7.226523 CGTTTTTGGAAGGATTTCAAGGAAAAT 59.773 33.333 0.00 0.00 35.11 1.82
1046 1064 8.902806 GTTTTTGGAAGGATTTCAAGGAAAATT 58.097 29.630 0.00 0.00 35.11 1.82
1047 1065 8.675705 TTTTGGAAGGATTTCAAGGAAAATTC 57.324 30.769 0.00 2.04 35.11 2.17
1048 1066 6.992664 TGGAAGGATTTCAAGGAAAATTCA 57.007 33.333 12.52 0.00 35.11 2.57
1049 1067 7.372260 TGGAAGGATTTCAAGGAAAATTCAA 57.628 32.000 12.52 3.93 35.11 2.69
1050 1068 7.444299 TGGAAGGATTTCAAGGAAAATTCAAG 58.556 34.615 12.52 0.00 35.11 3.02
1051 1069 7.289782 TGGAAGGATTTCAAGGAAAATTCAAGA 59.710 33.333 12.52 0.00 35.11 3.02
1052 1070 8.150296 GGAAGGATTTCAAGGAAAATTCAAGAA 58.850 33.333 12.52 0.00 35.11 2.52
1053 1071 8.893219 AAGGATTTCAAGGAAAATTCAAGAAC 57.107 30.769 0.00 0.00 35.11 3.01
1054 1072 8.255111 AGGATTTCAAGGAAAATTCAAGAACT 57.745 30.769 0.00 0.00 35.11 3.01
1055 1073 8.708378 AGGATTTCAAGGAAAATTCAAGAACTT 58.292 29.630 0.00 0.00 35.11 2.66
1056 1074 8.768019 GGATTTCAAGGAAAATTCAAGAACTTG 58.232 33.333 8.09 8.09 37.22 3.16
1057 1075 7.538303 TTTCAAGGAAAATTCAAGAACTTGC 57.462 32.000 9.38 0.00 40.24 4.01
1058 1076 6.219417 TCAAGGAAAATTCAAGAACTTGCA 57.781 33.333 9.38 0.00 40.24 4.08
1059 1077 6.638610 TCAAGGAAAATTCAAGAACTTGCAA 58.361 32.000 9.38 0.00 40.24 4.08
1060 1078 6.534793 TCAAGGAAAATTCAAGAACTTGCAAC 59.465 34.615 9.38 0.00 40.24 4.17
1061 1079 6.225981 AGGAAAATTCAAGAACTTGCAACT 57.774 33.333 9.38 0.00 40.24 3.16
1062 1080 6.276091 AGGAAAATTCAAGAACTTGCAACTC 58.724 36.000 9.38 0.00 40.24 3.01
1063 1081 6.097412 AGGAAAATTCAAGAACTTGCAACTCT 59.903 34.615 9.38 0.00 40.24 3.24
1064 1082 6.419116 GGAAAATTCAAGAACTTGCAACTCTC 59.581 38.462 9.38 0.00 40.24 3.20
1065 1083 5.444663 AATTCAAGAACTTGCAACTCTCC 57.555 39.130 9.38 0.00 40.24 3.71
1066 1084 2.483876 TCAAGAACTTGCAACTCTCCG 58.516 47.619 9.38 0.00 40.24 4.63
1067 1085 2.102420 TCAAGAACTTGCAACTCTCCGA 59.898 45.455 9.38 0.00 40.24 4.55
1068 1086 2.872245 CAAGAACTTGCAACTCTCCGAA 59.128 45.455 0.00 0.00 33.45 4.30
1069 1087 3.194005 AGAACTTGCAACTCTCCGAAA 57.806 42.857 0.00 0.00 0.00 3.46
1070 1088 2.872858 AGAACTTGCAACTCTCCGAAAC 59.127 45.455 0.00 0.00 0.00 2.78
1071 1089 2.325583 ACTTGCAACTCTCCGAAACA 57.674 45.000 0.00 0.00 0.00 2.83
1072 1090 2.213499 ACTTGCAACTCTCCGAAACAG 58.787 47.619 0.00 0.00 0.00 3.16
1073 1091 2.158957 ACTTGCAACTCTCCGAAACAGA 60.159 45.455 0.00 0.00 0.00 3.41
1074 1092 2.154854 TGCAACTCTCCGAAACAGAG 57.845 50.000 0.00 0.00 42.84 3.35
1075 1093 1.686587 TGCAACTCTCCGAAACAGAGA 59.313 47.619 3.72 0.00 40.02 3.10
1076 1094 2.102420 TGCAACTCTCCGAAACAGAGAA 59.898 45.455 3.72 0.00 40.02 2.87
1077 1095 3.131396 GCAACTCTCCGAAACAGAGAAA 58.869 45.455 3.72 0.00 40.02 2.52
1078 1096 3.560068 GCAACTCTCCGAAACAGAGAAAA 59.440 43.478 3.72 0.00 40.02 2.29
1079 1097 4.035208 GCAACTCTCCGAAACAGAGAAAAA 59.965 41.667 3.72 0.00 40.02 1.94
1080 1098 5.742446 CAACTCTCCGAAACAGAGAAAAAG 58.258 41.667 3.72 0.00 40.02 2.27
1081 1099 4.381411 ACTCTCCGAAACAGAGAAAAAGG 58.619 43.478 3.72 0.00 40.02 3.11
1082 1100 3.740115 TCTCCGAAACAGAGAAAAAGGG 58.260 45.455 0.00 0.00 37.44 3.95
1083 1101 3.389983 TCTCCGAAACAGAGAAAAAGGGA 59.610 43.478 0.00 0.00 37.44 4.20
1084 1102 4.134563 CTCCGAAACAGAGAAAAAGGGAA 58.865 43.478 0.00 0.00 32.86 3.97
1085 1103 4.725490 TCCGAAACAGAGAAAAAGGGAAT 58.275 39.130 0.00 0.00 0.00 3.01
1086 1104 4.760204 TCCGAAACAGAGAAAAAGGGAATC 59.240 41.667 0.00 0.00 0.00 2.52
1087 1105 4.518970 CCGAAACAGAGAAAAAGGGAATCA 59.481 41.667 0.00 0.00 0.00 2.57
1088 1106 5.335191 CCGAAACAGAGAAAAAGGGAATCAG 60.335 44.000 0.00 0.00 0.00 2.90
1089 1107 5.335191 CGAAACAGAGAAAAAGGGAATCAGG 60.335 44.000 0.00 0.00 0.00 3.86
1090 1108 5.324832 AACAGAGAAAAAGGGAATCAGGA 57.675 39.130 0.00 0.00 0.00 3.86
1091 1109 5.527026 ACAGAGAAAAAGGGAATCAGGAT 57.473 39.130 0.00 0.00 0.00 3.24
1092 1110 5.896963 ACAGAGAAAAAGGGAATCAGGATT 58.103 37.500 0.00 0.00 0.00 3.01
1093 1111 5.713861 ACAGAGAAAAAGGGAATCAGGATTG 59.286 40.000 0.00 0.00 0.00 2.67
1094 1112 5.126707 CAGAGAAAAAGGGAATCAGGATTGG 59.873 44.000 0.00 0.00 0.00 3.16
1095 1113 5.015603 AGAGAAAAAGGGAATCAGGATTGGA 59.984 40.000 0.00 0.00 0.00 3.53
1096 1114 5.654370 AGAAAAAGGGAATCAGGATTGGAA 58.346 37.500 0.00 0.00 0.00 3.53
1097 1115 6.084060 AGAAAAAGGGAATCAGGATTGGAAA 58.916 36.000 0.00 0.00 0.00 3.13
1098 1116 6.212187 AGAAAAAGGGAATCAGGATTGGAAAG 59.788 38.462 0.00 0.00 0.00 2.62
1099 1117 4.953781 AAGGGAATCAGGATTGGAAAGA 57.046 40.909 0.00 0.00 0.00 2.52
1100 1118 4.953781 AGGGAATCAGGATTGGAAAGAA 57.046 40.909 0.00 0.00 0.00 2.52
1101 1119 4.864726 AGGGAATCAGGATTGGAAAGAAG 58.135 43.478 0.00 0.00 0.00 2.85
1102 1120 3.382865 GGGAATCAGGATTGGAAAGAAGC 59.617 47.826 0.00 0.00 0.00 3.86
1103 1121 4.019174 GGAATCAGGATTGGAAAGAAGCA 58.981 43.478 0.00 0.00 0.00 3.91
1104 1122 4.097589 GGAATCAGGATTGGAAAGAAGCAG 59.902 45.833 0.00 0.00 0.00 4.24
1105 1123 3.077484 TCAGGATTGGAAAGAAGCAGG 57.923 47.619 0.00 0.00 0.00 4.85
1106 1124 1.475682 CAGGATTGGAAAGAAGCAGGC 59.524 52.381 0.00 0.00 0.00 4.85
1107 1125 1.076024 AGGATTGGAAAGAAGCAGGCA 59.924 47.619 0.00 0.00 0.00 4.75
1108 1126 2.105766 GGATTGGAAAGAAGCAGGCAT 58.894 47.619 0.00 0.00 0.00 4.40
1109 1127 2.159142 GGATTGGAAAGAAGCAGGCATG 60.159 50.000 0.00 0.00 0.00 4.06
1122 1140 4.221422 GCATGCTCCTCGCGGGTA 62.221 66.667 11.37 0.00 43.27 3.69
1123 1141 2.499205 CATGCTCCTCGCGGGTAA 59.501 61.111 4.71 0.00 43.27 2.85
1124 1142 1.153449 CATGCTCCTCGCGGGTAAA 60.153 57.895 4.71 0.00 43.27 2.01
1125 1143 1.153429 ATGCTCCTCGCGGGTAAAC 60.153 57.895 4.71 0.00 43.27 2.01
1126 1144 1.895020 ATGCTCCTCGCGGGTAAACA 61.895 55.000 4.71 0.00 43.27 2.83
1127 1145 1.375013 GCTCCTCGCGGGTAAACAA 60.375 57.895 4.71 0.00 36.25 2.83
1128 1146 1.359459 GCTCCTCGCGGGTAAACAAG 61.359 60.000 4.71 0.00 36.25 3.16
1129 1147 1.359459 CTCCTCGCGGGTAAACAAGC 61.359 60.000 4.71 0.00 36.25 4.01
1130 1148 1.375523 CCTCGCGGGTAAACAAGCT 60.376 57.895 4.71 0.00 0.00 3.74
1131 1149 0.108520 CCTCGCGGGTAAACAAGCTA 60.109 55.000 4.71 0.00 0.00 3.32
1132 1150 0.997196 CTCGCGGGTAAACAAGCTAC 59.003 55.000 6.13 0.00 0.00 3.58
1133 1151 0.317799 TCGCGGGTAAACAAGCTACA 59.682 50.000 6.13 0.00 0.00 2.74
1134 1152 0.719465 CGCGGGTAAACAAGCTACAG 59.281 55.000 0.00 0.00 0.00 2.74
1135 1153 1.084289 GCGGGTAAACAAGCTACAGG 58.916 55.000 0.00 0.00 0.00 4.00
1136 1154 1.084289 CGGGTAAACAAGCTACAGGC 58.916 55.000 0.00 0.00 42.19 4.85
1151 1169 5.662674 CTACAGGCTGTAGGTAAACTTCT 57.337 43.478 36.24 8.49 44.90 2.85
1152 1170 4.538746 ACAGGCTGTAGGTAAACTTCTC 57.461 45.455 20.61 0.00 0.00 2.87
1153 1171 4.161102 ACAGGCTGTAGGTAAACTTCTCT 58.839 43.478 20.61 0.00 0.00 3.10
1154 1172 4.221041 ACAGGCTGTAGGTAAACTTCTCTC 59.779 45.833 20.61 0.00 0.00 3.20
1155 1173 4.220821 CAGGCTGTAGGTAAACTTCTCTCA 59.779 45.833 6.28 0.00 0.00 3.27
1156 1174 4.464597 AGGCTGTAGGTAAACTTCTCTCAG 59.535 45.833 0.00 0.00 0.00 3.35
1157 1175 4.463186 GGCTGTAGGTAAACTTCTCTCAGA 59.537 45.833 0.00 0.00 0.00 3.27
1158 1176 5.393678 GGCTGTAGGTAAACTTCTCTCAGAG 60.394 48.000 0.00 0.00 0.00 3.35
1159 1177 5.416326 GCTGTAGGTAAACTTCTCTCAGAGA 59.584 44.000 0.00 0.00 36.86 3.10
1160 1178 6.404293 GCTGTAGGTAAACTTCTCTCAGAGAG 60.404 46.154 20.25 20.25 43.64 3.20
1161 1179 5.946972 TGTAGGTAAACTTCTCTCAGAGAGG 59.053 44.000 24.74 12.22 42.54 3.69
1162 1180 3.767131 AGGTAAACTTCTCTCAGAGAGGC 59.233 47.826 24.74 8.50 42.54 4.70
1163 1181 3.118920 GGTAAACTTCTCTCAGAGAGGCC 60.119 52.174 24.74 12.73 42.54 5.19
1164 1182 1.181786 AACTTCTCTCAGAGAGGCCG 58.818 55.000 24.74 15.91 42.54 6.13
1165 1183 0.329931 ACTTCTCTCAGAGAGGCCGA 59.670 55.000 24.74 5.38 42.54 5.54
1166 1184 1.064017 ACTTCTCTCAGAGAGGCCGAT 60.064 52.381 24.74 6.26 42.54 4.18
1167 1185 2.031120 CTTCTCTCAGAGAGGCCGATT 58.969 52.381 24.74 0.00 42.54 3.34
1168 1186 3.218453 CTTCTCTCAGAGAGGCCGATTA 58.782 50.000 24.74 3.32 42.54 1.75
1169 1187 2.857483 TCTCTCAGAGAGGCCGATTAG 58.143 52.381 24.74 0.00 42.54 1.73
1170 1188 2.439880 TCTCTCAGAGAGGCCGATTAGA 59.560 50.000 24.74 2.18 42.54 2.10
1171 1189 2.813754 CTCTCAGAGAGGCCGATTAGAG 59.186 54.545 18.75 4.06 38.67 2.43
1172 1190 1.269448 CTCAGAGAGGCCGATTAGAGC 59.731 57.143 0.00 0.00 0.00 4.09
1173 1191 1.035923 CAGAGAGGCCGATTAGAGCA 58.964 55.000 0.00 0.00 0.00 4.26
1174 1192 1.000385 CAGAGAGGCCGATTAGAGCAG 60.000 57.143 0.00 0.00 0.00 4.24
1175 1193 1.133637 AGAGAGGCCGATTAGAGCAGA 60.134 52.381 0.00 0.00 0.00 4.26
1176 1194 1.269448 GAGAGGCCGATTAGAGCAGAG 59.731 57.143 0.00 0.00 0.00 3.35
1177 1195 0.319469 GAGGCCGATTAGAGCAGAGC 60.319 60.000 0.00 0.00 0.00 4.09
1178 1196 1.045350 AGGCCGATTAGAGCAGAGCA 61.045 55.000 0.00 0.00 0.00 4.26
1179 1197 0.034616 GGCCGATTAGAGCAGAGCAT 59.965 55.000 0.00 0.00 0.00 3.79
1180 1198 1.146637 GCCGATTAGAGCAGAGCATG 58.853 55.000 0.00 0.00 0.00 4.06
1181 1199 1.539929 GCCGATTAGAGCAGAGCATGT 60.540 52.381 0.00 0.00 0.00 3.21
1182 1200 2.133553 CCGATTAGAGCAGAGCATGTG 58.866 52.381 0.00 0.00 0.00 3.21
1183 1201 2.133553 CGATTAGAGCAGAGCATGTGG 58.866 52.381 0.00 0.00 0.00 4.17
1184 1202 2.492012 GATTAGAGCAGAGCATGTGGG 58.508 52.381 0.00 0.00 0.00 4.61
1185 1203 1.571955 TTAGAGCAGAGCATGTGGGA 58.428 50.000 0.00 0.00 0.00 4.37
1186 1204 1.571955 TAGAGCAGAGCATGTGGGAA 58.428 50.000 0.00 0.00 0.00 3.97
1187 1205 0.252479 AGAGCAGAGCATGTGGGAAG 59.748 55.000 0.00 0.00 0.00 3.46
1188 1206 0.251354 GAGCAGAGCATGTGGGAAGA 59.749 55.000 0.00 0.00 0.00 2.87
1189 1207 0.917533 AGCAGAGCATGTGGGAAGAT 59.082 50.000 0.00 0.00 0.00 2.40
1190 1208 1.134159 AGCAGAGCATGTGGGAAGATC 60.134 52.381 0.00 0.00 0.00 2.75
1191 1209 1.964552 CAGAGCATGTGGGAAGATCC 58.035 55.000 0.00 0.00 35.23 3.36
1192 1210 1.489649 CAGAGCATGTGGGAAGATCCT 59.510 52.381 0.00 0.00 36.57 3.24
1193 1211 2.092538 CAGAGCATGTGGGAAGATCCTT 60.093 50.000 0.00 0.00 36.57 3.36
1194 1212 2.092538 AGAGCATGTGGGAAGATCCTTG 60.093 50.000 0.00 0.00 36.57 3.61
1195 1213 1.064166 AGCATGTGGGAAGATCCTTGG 60.064 52.381 0.00 0.00 36.57 3.61
1196 1214 2.025863 GCATGTGGGAAGATCCTTGGG 61.026 57.143 0.00 0.00 36.57 4.12
1197 1215 0.929244 ATGTGGGAAGATCCTTGGGG 59.071 55.000 0.00 0.00 36.57 4.96
1198 1216 1.214305 TGTGGGAAGATCCTTGGGGG 61.214 60.000 0.00 0.00 36.57 5.40
1212 1230 2.610859 GGGGGAGCTTGGAGTCCA 60.611 66.667 8.12 8.12 34.14 4.02
1213 1231 2.231380 GGGGGAGCTTGGAGTCCAA 61.231 63.158 23.23 23.23 41.69 3.53
1214 1232 1.575447 GGGGGAGCTTGGAGTCCAAT 61.575 60.000 24.78 11.49 43.07 3.16
1215 1233 0.332972 GGGGAGCTTGGAGTCCAATT 59.667 55.000 24.78 15.90 43.07 2.32
1216 1234 1.272704 GGGGAGCTTGGAGTCCAATTT 60.273 52.381 24.78 15.54 43.07 1.82
1217 1235 2.529632 GGGAGCTTGGAGTCCAATTTT 58.470 47.619 24.78 13.08 43.07 1.82
1218 1236 2.899900 GGGAGCTTGGAGTCCAATTTTT 59.100 45.455 24.78 10.65 43.07 1.94
1239 1257 6.782298 TTTTGTGTGGAATGCATACAATTG 57.218 33.333 16.45 3.24 34.53 2.32
1240 1258 4.453177 TGTGTGGAATGCATACAATTGG 57.547 40.909 10.83 0.00 0.00 3.16
1241 1259 3.195182 TGTGTGGAATGCATACAATTGGG 59.805 43.478 10.83 0.00 0.00 4.12
1242 1260 2.765135 TGTGGAATGCATACAATTGGGG 59.235 45.455 10.83 0.00 0.00 4.96
1243 1261 3.030291 GTGGAATGCATACAATTGGGGA 58.970 45.455 10.83 0.45 0.00 4.81
1244 1262 3.068590 GTGGAATGCATACAATTGGGGAG 59.931 47.826 10.83 0.00 0.00 4.30
1245 1263 2.629617 GGAATGCATACAATTGGGGAGG 59.370 50.000 10.83 0.00 0.00 4.30
1246 1264 3.565307 GAATGCATACAATTGGGGAGGA 58.435 45.455 10.83 0.00 0.00 3.71
1247 1265 3.686227 ATGCATACAATTGGGGAGGAA 57.314 42.857 10.83 0.00 0.00 3.36
1248 1266 3.686227 TGCATACAATTGGGGAGGAAT 57.314 42.857 10.83 0.00 0.00 3.01
1249 1267 3.992999 TGCATACAATTGGGGAGGAATT 58.007 40.909 10.83 0.00 0.00 2.17
1250 1268 4.360889 TGCATACAATTGGGGAGGAATTT 58.639 39.130 10.83 0.00 0.00 1.82
1251 1269 4.782156 TGCATACAATTGGGGAGGAATTTT 59.218 37.500 10.83 0.00 0.00 1.82
1252 1270 5.250313 TGCATACAATTGGGGAGGAATTTTT 59.750 36.000 10.83 0.00 0.00 1.94
1276 1294 7.921786 TTCTCTTTACTTTCCATACATGTGG 57.078 36.000 9.11 1.72 40.76 4.17
1277 1295 6.414732 TCTCTTTACTTTCCATACATGTGGG 58.585 40.000 9.11 10.33 39.80 4.61
1278 1296 6.214615 TCTCTTTACTTTCCATACATGTGGGA 59.785 38.462 14.96 14.96 39.80 4.37
1279 1297 6.785076 TCTTTACTTTCCATACATGTGGGAA 58.215 36.000 22.71 22.71 39.80 3.97
1282 1300 4.235079 CTTTCCATACATGTGGGAAGGA 57.765 45.455 25.94 16.11 46.80 3.36
1283 1301 4.796606 CTTTCCATACATGTGGGAAGGAT 58.203 43.478 25.94 3.80 46.80 3.24
1284 1302 5.940617 CTTTCCATACATGTGGGAAGGATA 58.059 41.667 25.94 15.35 46.80 2.59
1285 1303 5.985175 TTCCATACATGTGGGAAGGATAA 57.015 39.130 22.71 6.83 39.80 1.75
1286 1304 5.567037 TCCATACATGTGGGAAGGATAAG 57.433 43.478 16.21 0.00 39.80 1.73
1287 1305 4.350816 TCCATACATGTGGGAAGGATAAGG 59.649 45.833 16.21 0.00 39.80 2.69
1288 1306 2.736670 ACATGTGGGAAGGATAAGGC 57.263 50.000 0.00 0.00 0.00 4.35
1289 1307 1.922447 ACATGTGGGAAGGATAAGGCA 59.078 47.619 0.00 0.00 0.00 4.75
1290 1308 2.301346 CATGTGGGAAGGATAAGGCAC 58.699 52.381 0.00 0.00 0.00 5.01
1292 1310 2.840511 TGTGGGAAGGATAAGGCACTA 58.159 47.619 0.00 0.00 38.49 2.74
1293 1311 2.771943 TGTGGGAAGGATAAGGCACTAG 59.228 50.000 0.00 0.00 38.49 2.57
1294 1312 3.039011 GTGGGAAGGATAAGGCACTAGA 58.961 50.000 0.00 0.00 38.49 2.43
1295 1313 3.648545 GTGGGAAGGATAAGGCACTAGAT 59.351 47.826 0.00 0.00 38.49 1.98
1296 1314 3.648067 TGGGAAGGATAAGGCACTAGATG 59.352 47.826 0.00 0.00 38.49 2.90
1307 1325 0.467384 CACTAGATGCTGGACCCTGG 59.533 60.000 0.00 0.00 0.00 4.45
1308 1326 0.339859 ACTAGATGCTGGACCCTGGA 59.660 55.000 0.00 0.00 0.00 3.86
1309 1327 1.047002 CTAGATGCTGGACCCTGGAG 58.953 60.000 0.00 0.00 0.00 3.86
1310 1328 0.636647 TAGATGCTGGACCCTGGAGA 59.363 55.000 0.00 0.00 0.00 3.71
1311 1329 0.030297 AGATGCTGGACCCTGGAGAT 60.030 55.000 0.00 0.00 0.00 2.75
1312 1330 0.842635 GATGCTGGACCCTGGAGATT 59.157 55.000 0.00 0.00 0.00 2.40
1313 1331 0.842635 ATGCTGGACCCTGGAGATTC 59.157 55.000 0.00 0.00 0.00 2.52
1314 1332 0.547471 TGCTGGACCCTGGAGATTCA 60.547 55.000 0.00 0.00 0.00 2.57
1315 1333 0.620556 GCTGGACCCTGGAGATTCAA 59.379 55.000 0.00 0.00 0.00 2.69
1316 1334 1.680249 GCTGGACCCTGGAGATTCAAC 60.680 57.143 0.00 0.00 0.00 3.18
1317 1335 1.630369 CTGGACCCTGGAGATTCAACA 59.370 52.381 0.00 0.00 0.00 3.33
1318 1336 2.040278 CTGGACCCTGGAGATTCAACAA 59.960 50.000 0.00 0.00 0.00 2.83
1319 1337 2.649312 TGGACCCTGGAGATTCAACAAT 59.351 45.455 0.00 0.00 0.00 2.71
1320 1338 3.849574 TGGACCCTGGAGATTCAACAATA 59.150 43.478 0.00 0.00 0.00 1.90
1321 1339 4.290985 TGGACCCTGGAGATTCAACAATAA 59.709 41.667 0.00 0.00 0.00 1.40
1322 1340 4.640647 GGACCCTGGAGATTCAACAATAAC 59.359 45.833 0.00 0.00 0.00 1.89
1323 1341 4.600062 ACCCTGGAGATTCAACAATAACC 58.400 43.478 0.00 0.00 0.00 2.85
1324 1342 4.292306 ACCCTGGAGATTCAACAATAACCT 59.708 41.667 0.00 0.00 0.00 3.50
1325 1343 5.222337 ACCCTGGAGATTCAACAATAACCTT 60.222 40.000 0.00 0.00 0.00 3.50
1326 1344 5.716703 CCCTGGAGATTCAACAATAACCTTT 59.283 40.000 0.00 0.00 0.00 3.11
1327 1345 6.211384 CCCTGGAGATTCAACAATAACCTTTT 59.789 38.462 0.00 0.00 0.00 2.27
1328 1346 7.396055 CCCTGGAGATTCAACAATAACCTTTTA 59.604 37.037 0.00 0.00 0.00 1.52
1329 1347 8.462016 CCTGGAGATTCAACAATAACCTTTTAG 58.538 37.037 0.00 0.00 0.00 1.85
1330 1348 8.934023 TGGAGATTCAACAATAACCTTTTAGT 57.066 30.769 0.00 0.00 0.00 2.24
1338 1356 9.238368 TCAACAATAACCTTTTAGTAATGGAGG 57.762 33.333 8.81 7.41 33.79 4.30
1339 1357 9.238368 CAACAATAACCTTTTAGTAATGGAGGA 57.762 33.333 12.10 0.00 33.79 3.71
1340 1358 9.990868 AACAATAACCTTTTAGTAATGGAGGAT 57.009 29.630 12.10 5.48 33.79 3.24
1341 1359 9.990868 ACAATAACCTTTTAGTAATGGAGGATT 57.009 29.630 12.10 7.16 33.79 3.01
1345 1363 8.721133 AACCTTTTAGTAATGGAGGATTTTGT 57.279 30.769 12.10 0.00 33.79 2.83
1346 1364 8.122472 ACCTTTTAGTAATGGAGGATTTTGTG 57.878 34.615 12.10 0.00 33.79 3.33
1347 1365 7.035612 CCTTTTAGTAATGGAGGATTTTGTGC 58.964 38.462 2.75 0.00 31.78 4.57
1348 1366 6.524101 TTTAGTAATGGAGGATTTTGTGCC 57.476 37.500 0.00 0.00 0.00 5.01
1349 1367 3.016736 AGTAATGGAGGATTTTGTGCCG 58.983 45.455 0.00 0.00 0.00 5.69
1350 1368 2.214376 AATGGAGGATTTTGTGCCGA 57.786 45.000 0.00 0.00 0.00 5.54
1351 1369 1.755179 ATGGAGGATTTTGTGCCGAG 58.245 50.000 0.00 0.00 0.00 4.63
1352 1370 0.400213 TGGAGGATTTTGTGCCGAGT 59.600 50.000 0.00 0.00 0.00 4.18
1353 1371 1.626321 TGGAGGATTTTGTGCCGAGTA 59.374 47.619 0.00 0.00 0.00 2.59
1354 1372 2.280628 GGAGGATTTTGTGCCGAGTAG 58.719 52.381 0.00 0.00 0.00 2.57
1355 1373 2.093658 GGAGGATTTTGTGCCGAGTAGA 60.094 50.000 0.00 0.00 0.00 2.59
1356 1374 3.596214 GAGGATTTTGTGCCGAGTAGAA 58.404 45.455 0.00 0.00 0.00 2.10
1357 1375 3.335579 AGGATTTTGTGCCGAGTAGAAC 58.664 45.455 0.00 0.00 0.00 3.01
1358 1376 3.008049 AGGATTTTGTGCCGAGTAGAACT 59.992 43.478 0.00 0.00 0.00 3.01
1359 1377 4.222145 AGGATTTTGTGCCGAGTAGAACTA 59.778 41.667 0.00 0.00 0.00 2.24
1360 1378 5.104900 AGGATTTTGTGCCGAGTAGAACTAT 60.105 40.000 0.00 0.00 0.00 2.12
1361 1379 6.097839 AGGATTTTGTGCCGAGTAGAACTATA 59.902 38.462 0.00 0.00 0.00 1.31
1362 1380 6.421202 GGATTTTGTGCCGAGTAGAACTATAG 59.579 42.308 0.00 0.00 0.00 1.31
1363 1381 6.519679 TTTTGTGCCGAGTAGAACTATAGA 57.480 37.500 6.78 0.00 0.00 1.98
1364 1382 6.710597 TTTGTGCCGAGTAGAACTATAGAT 57.289 37.500 6.78 0.00 0.00 1.98
1365 1383 5.690997 TGTGCCGAGTAGAACTATAGATG 57.309 43.478 6.78 0.00 0.00 2.90
1366 1384 5.374071 TGTGCCGAGTAGAACTATAGATGA 58.626 41.667 6.78 0.00 0.00 2.92
1367 1385 5.470437 TGTGCCGAGTAGAACTATAGATGAG 59.530 44.000 6.78 0.00 0.00 2.90
1368 1386 5.470777 GTGCCGAGTAGAACTATAGATGAGT 59.529 44.000 6.78 0.00 0.00 3.41
1369 1387 6.649973 GTGCCGAGTAGAACTATAGATGAGTA 59.350 42.308 6.78 0.00 0.00 2.59
1370 1388 6.649973 TGCCGAGTAGAACTATAGATGAGTAC 59.350 42.308 6.78 1.31 0.00 2.73
1371 1389 6.183360 GCCGAGTAGAACTATAGATGAGTACG 60.183 46.154 6.78 4.94 0.00 3.67
1372 1390 7.089538 CCGAGTAGAACTATAGATGAGTACGA 58.910 42.308 6.78 0.00 0.00 3.43
1373 1391 7.598118 CCGAGTAGAACTATAGATGAGTACGAA 59.402 40.741 6.78 0.00 0.00 3.85
1374 1392 9.142515 CGAGTAGAACTATAGATGAGTACGAAT 57.857 37.037 6.78 0.00 0.00 3.34
1387 1405 9.530633 AGATGAGTACGAATTTAAGACAATACC 57.469 33.333 0.00 0.00 0.00 2.73
1388 1406 9.530633 GATGAGTACGAATTTAAGACAATACCT 57.469 33.333 0.00 0.00 0.00 3.08
1395 1413 9.675464 ACGAATTTAAGACAATACCTATTTGGA 57.325 29.630 0.00 0.00 39.71 3.53
1402 1420 8.910351 AAGACAATACCTATTTGGATTAGAGC 57.090 34.615 0.00 0.00 39.71 4.09
1403 1421 8.268878 AGACAATACCTATTTGGATTAGAGCT 57.731 34.615 0.00 0.00 39.71 4.09
1404 1422 8.718656 AGACAATACCTATTTGGATTAGAGCTT 58.281 33.333 0.00 0.00 39.71 3.74
1405 1423 9.998106 GACAATACCTATTTGGATTAGAGCTTA 57.002 33.333 0.00 0.00 39.71 3.09
1408 1426 9.965902 AATACCTATTTGGATTAGAGCTTATGG 57.034 33.333 0.00 0.00 39.71 2.74
1409 1427 6.784031 ACCTATTTGGATTAGAGCTTATGGG 58.216 40.000 0.00 0.00 39.71 4.00
1410 1428 6.562608 ACCTATTTGGATTAGAGCTTATGGGA 59.437 38.462 0.00 0.00 39.71 4.37
1411 1429 7.240616 ACCTATTTGGATTAGAGCTTATGGGAT 59.759 37.037 0.00 0.00 39.71 3.85
1412 1430 8.112183 CCTATTTGGATTAGAGCTTATGGGATT 58.888 37.037 0.00 0.00 38.35 3.01
1413 1431 9.171877 CTATTTGGATTAGAGCTTATGGGATTC 57.828 37.037 0.00 0.00 0.00 2.52
1414 1432 5.505181 TGGATTAGAGCTTATGGGATTCC 57.495 43.478 0.00 0.00 0.00 3.01
1512 1530 1.336332 CGATGCGCTACTGATAAGGCT 60.336 52.381 9.73 0.00 0.00 4.58
1546 1564 2.432628 GCAGTAGCGCCTGTCGTT 60.433 61.111 14.02 0.00 41.07 3.85
1557 1575 1.542915 GCCTGTCGTTCCACACTACTA 59.457 52.381 0.00 0.00 0.00 1.82
1906 1926 6.019881 TCGATTACTTGCAAATACATCGTCAG 60.020 38.462 20.78 3.29 0.00 3.51
1987 2007 3.181479 GCAGTACATGAGTTCGTATCCCA 60.181 47.826 0.00 0.00 0.00 4.37
2027 2047 5.820404 ACCTAAACTAACTACTGCCTGTT 57.180 39.130 0.00 0.00 0.00 3.16
2061 2081 1.623542 AATCGGTACACCTGGGCCTC 61.624 60.000 4.53 0.00 0.00 4.70
2088 2108 3.057104 TCCGGCCACTCGTTGTATATATG 60.057 47.826 2.24 0.00 0.00 1.78
2090 2110 3.000727 GGCCACTCGTTGTATATATGCC 58.999 50.000 0.00 0.00 0.00 4.40
2344 2364 4.967575 CGTCGTGCATAACTCAAAGTTTTT 59.032 37.500 0.00 0.00 39.51 1.94
2407 2427 3.738982 TCGACAATCACTCCAACATGTT 58.261 40.909 4.92 4.92 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.327732 CCCCCTCGGTGTCTATATAAACTA 58.672 45.833 0.00 0.00 0.00 2.24
30 32 0.683412 AACCGACTCTGTGTAACCCC 59.317 55.000 0.00 0.00 34.36 4.95
164 171 4.038763 CAGCCGGACTATATACTTTGGTCA 59.961 45.833 5.05 0.00 0.00 4.02
287 295 1.153309 GCCTATTAACGGCCCGTGT 60.153 57.895 10.80 2.52 39.99 4.49
350 359 4.853468 TTTCACTTCAGGCCCATGTATA 57.147 40.909 0.00 0.00 0.00 1.47
362 371 0.181587 TCCAGCCCGTTTTCACTTCA 59.818 50.000 0.00 0.00 0.00 3.02
395 405 2.202866 CCAGTAGCGTCATCTGGGT 58.797 57.895 0.00 0.00 43.30 4.51
421 431 1.375523 CCCGTTATGCCCTATCCGC 60.376 63.158 0.00 0.00 0.00 5.54
505 516 2.862541 TGACTGGGTCAAAAGATGGTG 58.137 47.619 0.00 0.00 39.78 4.17
533 549 0.897621 CCATTCCTGTGAAAAGGCCC 59.102 55.000 0.00 0.00 37.24 5.80
581 597 1.003118 ACAGAAGGCGCCTATGAAACA 59.997 47.619 35.63 0.00 0.00 2.83
584 600 0.178068 GGACAGAAGGCGCCTATGAA 59.822 55.000 35.63 0.00 0.00 2.57
685 701 0.693622 TTAACAGCCCCGACCAATGA 59.306 50.000 0.00 0.00 0.00 2.57
730 746 2.273557 GGAACGCCGTTAAGCTATTGA 58.726 47.619 0.79 0.00 0.00 2.57
776 792 1.947456 GAAGTGCTTTCGTCAAGGGTT 59.053 47.619 0.00 0.00 32.37 4.11
806 822 3.073678 CCACTTCCATGACGACAAATCA 58.926 45.455 0.00 0.00 0.00 2.57
812 828 1.000955 AGTGTCCACTTCCATGACGAC 59.999 52.381 0.00 0.00 38.83 4.34
999 1017 0.477597 TGGTTCCTGAGTCCCCCATT 60.478 55.000 0.00 0.00 0.00 3.16
1003 1021 1.765597 AACGTGGTTCCTGAGTCCCC 61.766 60.000 0.00 0.00 0.00 4.81
1004 1022 0.108019 AAACGTGGTTCCTGAGTCCC 59.892 55.000 0.00 0.00 0.00 4.46
1005 1023 1.963172 AAAACGTGGTTCCTGAGTCC 58.037 50.000 0.00 0.00 0.00 3.85
1006 1024 2.032924 CCAAAAACGTGGTTCCTGAGTC 59.967 50.000 0.00 0.00 33.63 3.36
1007 1025 2.021457 CCAAAAACGTGGTTCCTGAGT 58.979 47.619 0.00 0.00 33.63 3.41
1008 1026 2.294074 TCCAAAAACGTGGTTCCTGAG 58.706 47.619 0.00 0.00 39.88 3.35
1009 1027 2.421751 TCCAAAAACGTGGTTCCTGA 57.578 45.000 0.00 0.00 39.88 3.86
1010 1028 2.223711 CCTTCCAAAAACGTGGTTCCTG 60.224 50.000 0.00 0.00 39.88 3.86
1011 1029 2.028876 CCTTCCAAAAACGTGGTTCCT 58.971 47.619 0.00 0.00 39.88 3.36
1012 1030 2.025898 TCCTTCCAAAAACGTGGTTCC 58.974 47.619 0.00 0.00 39.88 3.62
1013 1031 4.316205 AATCCTTCCAAAAACGTGGTTC 57.684 40.909 0.00 0.00 39.88 3.62
1014 1032 4.160626 TGAAATCCTTCCAAAAACGTGGTT 59.839 37.500 0.00 0.00 39.88 3.67
1015 1033 3.702045 TGAAATCCTTCCAAAAACGTGGT 59.298 39.130 0.00 0.00 39.88 4.16
1016 1034 4.314740 TGAAATCCTTCCAAAAACGTGG 57.685 40.909 0.00 0.00 40.33 4.94
1017 1035 4.744631 CCTTGAAATCCTTCCAAAAACGTG 59.255 41.667 0.00 0.00 0.00 4.49
1018 1036 4.647399 TCCTTGAAATCCTTCCAAAAACGT 59.353 37.500 0.00 0.00 0.00 3.99
1019 1037 5.195001 TCCTTGAAATCCTTCCAAAAACG 57.805 39.130 0.00 0.00 0.00 3.60
1020 1038 7.857734 TTTTCCTTGAAATCCTTCCAAAAAC 57.142 32.000 0.00 0.00 31.34 2.43
1021 1039 9.119418 GAATTTTCCTTGAAATCCTTCCAAAAA 57.881 29.630 0.00 0.00 31.34 1.94
1022 1040 8.270744 TGAATTTTCCTTGAAATCCTTCCAAAA 58.729 29.630 0.00 0.00 31.34 2.44
1023 1041 7.800092 TGAATTTTCCTTGAAATCCTTCCAAA 58.200 30.769 0.00 0.00 31.34 3.28
1024 1042 7.372260 TGAATTTTCCTTGAAATCCTTCCAA 57.628 32.000 0.00 0.00 31.34 3.53
1025 1043 6.992664 TGAATTTTCCTTGAAATCCTTCCA 57.007 33.333 0.00 0.00 31.34 3.53
1026 1044 7.670364 TCTTGAATTTTCCTTGAAATCCTTCC 58.330 34.615 0.00 0.00 31.34 3.46
1027 1045 8.982685 GTTCTTGAATTTTCCTTGAAATCCTTC 58.017 33.333 0.00 0.00 31.34 3.46
1028 1046 8.708378 AGTTCTTGAATTTTCCTTGAAATCCTT 58.292 29.630 0.00 0.00 31.34 3.36
1029 1047 8.255111 AGTTCTTGAATTTTCCTTGAAATCCT 57.745 30.769 0.00 0.00 31.34 3.24
1030 1048 8.768019 CAAGTTCTTGAATTTTCCTTGAAATCC 58.232 33.333 6.71 0.00 31.34 3.01
1031 1049 8.278408 GCAAGTTCTTGAATTTTCCTTGAAATC 58.722 33.333 15.52 0.00 31.34 2.17
1032 1050 7.769970 TGCAAGTTCTTGAATTTTCCTTGAAAT 59.230 29.630 15.52 0.13 31.34 2.17
1033 1051 7.102346 TGCAAGTTCTTGAATTTTCCTTGAAA 58.898 30.769 15.52 0.00 31.75 2.69
1034 1052 6.638610 TGCAAGTTCTTGAATTTTCCTTGAA 58.361 32.000 15.52 2.62 31.75 2.69
1035 1053 6.219417 TGCAAGTTCTTGAATTTTCCTTGA 57.781 33.333 15.52 0.35 31.75 3.02
1036 1054 6.536224 AGTTGCAAGTTCTTGAATTTTCCTTG 59.464 34.615 15.52 0.00 0.00 3.61
1037 1055 6.643388 AGTTGCAAGTTCTTGAATTTTCCTT 58.357 32.000 15.52 0.00 0.00 3.36
1038 1056 6.097412 AGAGTTGCAAGTTCTTGAATTTTCCT 59.903 34.615 15.52 0.00 0.00 3.36
1039 1057 6.276091 AGAGTTGCAAGTTCTTGAATTTTCC 58.724 36.000 15.52 0.00 0.00 3.13
1040 1058 6.419116 GGAGAGTTGCAAGTTCTTGAATTTTC 59.581 38.462 15.52 8.52 0.00 2.29
1041 1059 6.276091 GGAGAGTTGCAAGTTCTTGAATTTT 58.724 36.000 15.52 1.58 0.00 1.82
1042 1060 5.506317 CGGAGAGTTGCAAGTTCTTGAATTT 60.506 40.000 15.52 0.00 0.00 1.82
1043 1061 4.023707 CGGAGAGTTGCAAGTTCTTGAATT 60.024 41.667 15.52 5.08 0.00 2.17
1044 1062 3.499918 CGGAGAGTTGCAAGTTCTTGAAT 59.500 43.478 15.52 0.00 0.00 2.57
1045 1063 2.872245 CGGAGAGTTGCAAGTTCTTGAA 59.128 45.455 15.52 2.96 0.00 2.69
1046 1064 2.102420 TCGGAGAGTTGCAAGTTCTTGA 59.898 45.455 15.52 9.68 0.00 3.02
1047 1065 2.483876 TCGGAGAGTTGCAAGTTCTTG 58.516 47.619 8.48 8.04 0.00 3.02
1048 1066 2.910688 TCGGAGAGTTGCAAGTTCTT 57.089 45.000 8.48 0.00 0.00 2.52
1049 1067 2.872858 GTTTCGGAGAGTTGCAAGTTCT 59.127 45.455 8.48 10.54 38.43 3.01
1050 1068 2.612212 TGTTTCGGAGAGTTGCAAGTTC 59.388 45.455 8.48 5.51 38.43 3.01
1051 1069 2.614057 CTGTTTCGGAGAGTTGCAAGTT 59.386 45.455 8.48 0.00 38.43 2.66
1052 1070 2.158957 TCTGTTTCGGAGAGTTGCAAGT 60.159 45.455 6.46 6.46 38.43 3.16
1053 1071 2.478134 CTCTGTTTCGGAGAGTTGCAAG 59.522 50.000 0.00 0.00 39.05 4.01
1054 1072 2.102420 TCTCTGTTTCGGAGAGTTGCAA 59.898 45.455 0.00 0.00 40.49 4.08
1055 1073 1.686587 TCTCTGTTTCGGAGAGTTGCA 59.313 47.619 4.42 0.00 40.49 4.08
1056 1074 2.440539 TCTCTGTTTCGGAGAGTTGC 57.559 50.000 4.42 0.00 40.49 4.17
1057 1075 5.277538 CCTTTTTCTCTGTTTCGGAGAGTTG 60.278 44.000 8.07 2.45 45.17 3.16
1058 1076 4.816925 CCTTTTTCTCTGTTTCGGAGAGTT 59.183 41.667 8.07 0.00 45.17 3.01
1059 1077 4.381411 CCTTTTTCTCTGTTTCGGAGAGT 58.619 43.478 8.07 0.00 45.17 3.24
1060 1078 3.748568 CCCTTTTTCTCTGTTTCGGAGAG 59.251 47.826 8.07 0.00 45.17 3.20
1061 1079 3.389983 TCCCTTTTTCTCTGTTTCGGAGA 59.610 43.478 4.42 4.42 43.23 3.71
1062 1080 3.740115 TCCCTTTTTCTCTGTTTCGGAG 58.260 45.455 0.00 0.00 38.15 4.63
1063 1081 3.849563 TCCCTTTTTCTCTGTTTCGGA 57.150 42.857 0.00 0.00 0.00 4.55
1064 1082 4.518970 TGATTCCCTTTTTCTCTGTTTCGG 59.481 41.667 0.00 0.00 0.00 4.30
1065 1083 5.335191 CCTGATTCCCTTTTTCTCTGTTTCG 60.335 44.000 0.00 0.00 0.00 3.46
1066 1084 5.770162 TCCTGATTCCCTTTTTCTCTGTTTC 59.230 40.000 0.00 0.00 0.00 2.78
1067 1085 5.705400 TCCTGATTCCCTTTTTCTCTGTTT 58.295 37.500 0.00 0.00 0.00 2.83
1068 1086 5.324832 TCCTGATTCCCTTTTTCTCTGTT 57.675 39.130 0.00 0.00 0.00 3.16
1069 1087 5.527026 ATCCTGATTCCCTTTTTCTCTGT 57.473 39.130 0.00 0.00 0.00 3.41
1070 1088 5.126707 CCAATCCTGATTCCCTTTTTCTCTG 59.873 44.000 0.00 0.00 0.00 3.35
1071 1089 5.015603 TCCAATCCTGATTCCCTTTTTCTCT 59.984 40.000 0.00 0.00 0.00 3.10
1072 1090 5.264395 TCCAATCCTGATTCCCTTTTTCTC 58.736 41.667 0.00 0.00 0.00 2.87
1073 1091 5.275263 TCCAATCCTGATTCCCTTTTTCT 57.725 39.130 0.00 0.00 0.00 2.52
1074 1092 6.211384 TCTTTCCAATCCTGATTCCCTTTTTC 59.789 38.462 0.00 0.00 0.00 2.29
1075 1093 6.084060 TCTTTCCAATCCTGATTCCCTTTTT 58.916 36.000 0.00 0.00 0.00 1.94
1076 1094 5.654370 TCTTTCCAATCCTGATTCCCTTTT 58.346 37.500 0.00 0.00 0.00 2.27
1077 1095 5.275263 TCTTTCCAATCCTGATTCCCTTT 57.725 39.130 0.00 0.00 0.00 3.11
1078 1096 4.953781 TCTTTCCAATCCTGATTCCCTT 57.046 40.909 0.00 0.00 0.00 3.95
1079 1097 4.864726 CTTCTTTCCAATCCTGATTCCCT 58.135 43.478 0.00 0.00 0.00 4.20
1080 1098 3.382865 GCTTCTTTCCAATCCTGATTCCC 59.617 47.826 0.00 0.00 0.00 3.97
1081 1099 4.019174 TGCTTCTTTCCAATCCTGATTCC 58.981 43.478 0.00 0.00 0.00 3.01
1082 1100 4.097589 CCTGCTTCTTTCCAATCCTGATTC 59.902 45.833 0.00 0.00 0.00 2.52
1083 1101 4.021916 CCTGCTTCTTTCCAATCCTGATT 58.978 43.478 0.00 0.00 0.00 2.57
1084 1102 3.629087 CCTGCTTCTTTCCAATCCTGAT 58.371 45.455 0.00 0.00 0.00 2.90
1085 1103 2.881403 GCCTGCTTCTTTCCAATCCTGA 60.881 50.000 0.00 0.00 0.00 3.86
1086 1104 1.475682 GCCTGCTTCTTTCCAATCCTG 59.524 52.381 0.00 0.00 0.00 3.86
1087 1105 1.076024 TGCCTGCTTCTTTCCAATCCT 59.924 47.619 0.00 0.00 0.00 3.24
1088 1106 1.549203 TGCCTGCTTCTTTCCAATCC 58.451 50.000 0.00 0.00 0.00 3.01
1089 1107 2.737679 GCATGCCTGCTTCTTTCCAATC 60.738 50.000 6.36 0.00 45.32 2.67
1090 1108 1.206371 GCATGCCTGCTTCTTTCCAAT 59.794 47.619 6.36 0.00 45.32 3.16
1091 1109 0.604578 GCATGCCTGCTTCTTTCCAA 59.395 50.000 6.36 0.00 45.32 3.53
1092 1110 2.269978 GCATGCCTGCTTCTTTCCA 58.730 52.632 6.36 0.00 45.32 3.53
1113 1131 0.997196 GTAGCTTGTTTACCCGCGAG 59.003 55.000 8.23 0.00 0.00 5.03
1114 1132 0.317799 TGTAGCTTGTTTACCCGCGA 59.682 50.000 8.23 0.00 0.00 5.87
1115 1133 0.719465 CTGTAGCTTGTTTACCCGCG 59.281 55.000 0.00 0.00 0.00 6.46
1116 1134 1.084289 CCTGTAGCTTGTTTACCCGC 58.916 55.000 0.00 0.00 0.00 6.13
1117 1135 1.084289 GCCTGTAGCTTGTTTACCCG 58.916 55.000 0.00 0.00 38.99 5.28
1128 1146 3.889520 AGTTTACCTACAGCCTGTAGC 57.110 47.619 23.65 11.41 46.72 3.58
1130 1148 5.331069 AGAGAAGTTTACCTACAGCCTGTA 58.669 41.667 4.20 4.20 0.00 2.74
1131 1149 4.161102 AGAGAAGTTTACCTACAGCCTGT 58.839 43.478 1.54 1.54 0.00 4.00
1132 1150 4.220821 TGAGAGAAGTTTACCTACAGCCTG 59.779 45.833 0.00 0.00 0.00 4.85
1133 1151 4.417437 TGAGAGAAGTTTACCTACAGCCT 58.583 43.478 0.00 0.00 0.00 4.58
1134 1152 4.463186 TCTGAGAGAAGTTTACCTACAGCC 59.537 45.833 0.00 0.00 0.00 4.85
1135 1153 5.416326 TCTCTGAGAGAAGTTTACCTACAGC 59.584 44.000 10.22 0.00 35.59 4.40
1136 1154 6.094881 CCTCTCTGAGAGAAGTTTACCTACAG 59.905 46.154 31.14 9.29 45.07 2.74
1137 1155 5.946972 CCTCTCTGAGAGAAGTTTACCTACA 59.053 44.000 31.14 0.00 45.07 2.74
1138 1156 5.163591 GCCTCTCTGAGAGAAGTTTACCTAC 60.164 48.000 31.14 6.25 45.07 3.18
1139 1157 4.951094 GCCTCTCTGAGAGAAGTTTACCTA 59.049 45.833 31.14 0.00 45.07 3.08
1140 1158 3.767131 GCCTCTCTGAGAGAAGTTTACCT 59.233 47.826 31.14 0.00 45.07 3.08
1141 1159 3.118920 GGCCTCTCTGAGAGAAGTTTACC 60.119 52.174 31.14 17.37 45.07 2.85
1142 1160 3.428316 CGGCCTCTCTGAGAGAAGTTTAC 60.428 52.174 31.14 13.88 45.07 2.01
1143 1161 2.755655 CGGCCTCTCTGAGAGAAGTTTA 59.244 50.000 31.14 0.00 45.07 2.01
1144 1162 1.548269 CGGCCTCTCTGAGAGAAGTTT 59.452 52.381 31.14 0.00 45.07 2.66
1145 1163 1.181786 CGGCCTCTCTGAGAGAAGTT 58.818 55.000 31.14 0.00 45.07 2.66
1146 1164 0.329931 TCGGCCTCTCTGAGAGAAGT 59.670 55.000 31.14 0.00 45.07 3.01
1147 1165 1.691196 ATCGGCCTCTCTGAGAGAAG 58.309 55.000 31.14 21.46 45.07 2.85
1148 1166 2.151502 AATCGGCCTCTCTGAGAGAA 57.848 50.000 31.14 16.05 45.07 2.87
1149 1167 2.439880 TCTAATCGGCCTCTCTGAGAGA 59.560 50.000 31.14 12.24 45.07 3.10
1150 1168 2.813754 CTCTAATCGGCCTCTCTGAGAG 59.186 54.545 24.56 24.56 41.96 3.20
1151 1169 2.857483 CTCTAATCGGCCTCTCTGAGA 58.143 52.381 7.24 7.24 32.71 3.27
1152 1170 1.269448 GCTCTAATCGGCCTCTCTGAG 59.731 57.143 0.00 4.39 32.71 3.35
1153 1171 1.323412 GCTCTAATCGGCCTCTCTGA 58.677 55.000 0.00 0.00 33.95 3.27
1154 1172 1.000385 CTGCTCTAATCGGCCTCTCTG 60.000 57.143 0.00 0.00 0.00 3.35
1155 1173 1.133637 TCTGCTCTAATCGGCCTCTCT 60.134 52.381 0.00 0.00 0.00 3.10
1156 1174 1.269448 CTCTGCTCTAATCGGCCTCTC 59.731 57.143 0.00 0.00 0.00 3.20
1157 1175 1.327303 CTCTGCTCTAATCGGCCTCT 58.673 55.000 0.00 0.00 0.00 3.69
1158 1176 0.319469 GCTCTGCTCTAATCGGCCTC 60.319 60.000 0.00 0.00 0.00 4.70
1159 1177 1.045350 TGCTCTGCTCTAATCGGCCT 61.045 55.000 0.00 0.00 0.00 5.19
1160 1178 0.034616 ATGCTCTGCTCTAATCGGCC 59.965 55.000 0.00 0.00 0.00 6.13
1161 1179 1.146637 CATGCTCTGCTCTAATCGGC 58.853 55.000 0.00 0.00 0.00 5.54
1162 1180 2.133553 CACATGCTCTGCTCTAATCGG 58.866 52.381 0.00 0.00 0.00 4.18
1163 1181 2.133553 CCACATGCTCTGCTCTAATCG 58.866 52.381 0.00 0.00 0.00 3.34
1164 1182 2.103771 TCCCACATGCTCTGCTCTAATC 59.896 50.000 0.00 0.00 0.00 1.75
1165 1183 2.121948 TCCCACATGCTCTGCTCTAAT 58.878 47.619 0.00 0.00 0.00 1.73
1166 1184 1.571955 TCCCACATGCTCTGCTCTAA 58.428 50.000 0.00 0.00 0.00 2.10
1167 1185 1.483827 CTTCCCACATGCTCTGCTCTA 59.516 52.381 0.00 0.00 0.00 2.43
1168 1186 0.252479 CTTCCCACATGCTCTGCTCT 59.748 55.000 0.00 0.00 0.00 4.09
1169 1187 0.251354 TCTTCCCACATGCTCTGCTC 59.749 55.000 0.00 0.00 0.00 4.26
1170 1188 0.917533 ATCTTCCCACATGCTCTGCT 59.082 50.000 0.00 0.00 0.00 4.24
1171 1189 1.307097 GATCTTCCCACATGCTCTGC 58.693 55.000 0.00 0.00 0.00 4.26
1172 1190 1.489649 AGGATCTTCCCACATGCTCTG 59.510 52.381 0.00 0.00 37.19 3.35
1173 1191 1.890552 AGGATCTTCCCACATGCTCT 58.109 50.000 0.00 0.00 37.19 4.09
1174 1192 2.295885 CAAGGATCTTCCCACATGCTC 58.704 52.381 0.00 0.00 37.19 4.26
1175 1193 1.064166 CCAAGGATCTTCCCACATGCT 60.064 52.381 0.00 0.00 37.19 3.79
1176 1194 1.396653 CCAAGGATCTTCCCACATGC 58.603 55.000 0.00 0.00 37.19 4.06
1177 1195 1.410648 CCCCAAGGATCTTCCCACATG 60.411 57.143 0.00 0.00 37.19 3.21
1178 1196 0.929244 CCCCAAGGATCTTCCCACAT 59.071 55.000 0.00 0.00 37.19 3.21
1179 1197 1.214305 CCCCCAAGGATCTTCCCACA 61.214 60.000 0.00 0.00 37.19 4.17
1180 1198 1.615262 CCCCCAAGGATCTTCCCAC 59.385 63.158 0.00 0.00 37.19 4.61
1181 1199 4.186911 CCCCCAAGGATCTTCCCA 57.813 61.111 0.00 0.00 37.19 4.37
1195 1213 2.231380 TTGGACTCCAAGCTCCCCC 61.231 63.158 6.39 0.00 38.75 5.40
1196 1214 3.495729 TTGGACTCCAAGCTCCCC 58.504 61.111 6.39 0.00 38.75 4.81
1215 1233 6.204301 CCAATTGTATGCATTCCACACAAAAA 59.796 34.615 14.23 0.00 33.24 1.94
1216 1234 5.699915 CCAATTGTATGCATTCCACACAAAA 59.300 36.000 14.23 0.00 33.24 2.44
1217 1235 5.236282 CCAATTGTATGCATTCCACACAAA 58.764 37.500 14.23 1.47 33.24 2.83
1218 1236 4.322574 CCCAATTGTATGCATTCCACACAA 60.323 41.667 12.96 12.96 33.96 3.33
1219 1237 3.195182 CCCAATTGTATGCATTCCACACA 59.805 43.478 3.54 0.00 0.00 3.72
1220 1238 3.430651 CCCCAATTGTATGCATTCCACAC 60.431 47.826 3.54 0.00 0.00 3.82
1221 1239 2.765135 CCCCAATTGTATGCATTCCACA 59.235 45.455 3.54 0.00 0.00 4.17
1222 1240 3.030291 TCCCCAATTGTATGCATTCCAC 58.970 45.455 3.54 0.00 0.00 4.02
1223 1241 3.298619 CTCCCCAATTGTATGCATTCCA 58.701 45.455 3.54 0.00 0.00 3.53
1224 1242 2.629617 CCTCCCCAATTGTATGCATTCC 59.370 50.000 3.54 0.00 0.00 3.01
1225 1243 3.565307 TCCTCCCCAATTGTATGCATTC 58.435 45.455 3.54 0.00 0.00 2.67
1226 1244 3.686227 TCCTCCCCAATTGTATGCATT 57.314 42.857 3.54 0.00 0.00 3.56
1227 1245 3.686227 TTCCTCCCCAATTGTATGCAT 57.314 42.857 3.79 3.79 0.00 3.96
1228 1246 3.686227 ATTCCTCCCCAATTGTATGCA 57.314 42.857 4.43 0.00 0.00 3.96
1229 1247 5.357742 AAAATTCCTCCCCAATTGTATGC 57.642 39.130 4.43 0.00 0.00 3.14
1250 1268 8.792633 CCACATGTATGGAAAGTAAAGAGAAAA 58.207 33.333 0.00 0.00 43.02 2.29
1251 1269 7.393234 CCCACATGTATGGAAAGTAAAGAGAAA 59.607 37.037 0.00 0.00 43.02 2.52
1252 1270 6.884295 CCCACATGTATGGAAAGTAAAGAGAA 59.116 38.462 0.00 0.00 43.02 2.87
1253 1271 6.214615 TCCCACATGTATGGAAAGTAAAGAGA 59.785 38.462 12.63 0.00 43.02 3.10
1254 1272 6.414732 TCCCACATGTATGGAAAGTAAAGAG 58.585 40.000 12.63 0.00 43.02 2.85
1255 1273 6.381498 TCCCACATGTATGGAAAGTAAAGA 57.619 37.500 12.63 0.00 43.02 2.52
1256 1274 6.095440 CCTTCCCACATGTATGGAAAGTAAAG 59.905 42.308 22.50 13.55 43.02 1.85
1257 1275 5.949354 CCTTCCCACATGTATGGAAAGTAAA 59.051 40.000 22.50 6.78 43.02 2.01
1258 1276 5.251932 TCCTTCCCACATGTATGGAAAGTAA 59.748 40.000 22.50 10.70 43.02 2.24
1259 1277 4.785914 TCCTTCCCACATGTATGGAAAGTA 59.214 41.667 22.50 12.45 43.02 2.24
1260 1278 3.591527 TCCTTCCCACATGTATGGAAAGT 59.408 43.478 22.50 0.00 43.02 2.66
1261 1279 4.235079 TCCTTCCCACATGTATGGAAAG 57.765 45.455 22.50 18.53 43.02 2.62
1262 1280 4.879295 ATCCTTCCCACATGTATGGAAA 57.121 40.909 22.50 13.61 43.02 3.13
1263 1281 5.163099 CCTTATCCTTCCCACATGTATGGAA 60.163 44.000 21.51 21.51 43.02 3.53
1264 1282 4.350816 CCTTATCCTTCCCACATGTATGGA 59.649 45.833 11.30 11.30 43.02 3.41
1265 1283 4.655963 CCTTATCCTTCCCACATGTATGG 58.344 47.826 0.00 2.19 39.71 2.74
1266 1284 4.074970 GCCTTATCCTTCCCACATGTATG 58.925 47.826 0.00 0.00 0.00 2.39
1267 1285 3.721575 TGCCTTATCCTTCCCACATGTAT 59.278 43.478 0.00 0.00 0.00 2.29
1268 1286 3.118038 GTGCCTTATCCTTCCCACATGTA 60.118 47.826 0.00 0.00 0.00 2.29
1269 1287 1.922447 TGCCTTATCCTTCCCACATGT 59.078 47.619 0.00 0.00 0.00 3.21
1270 1288 2.092212 AGTGCCTTATCCTTCCCACATG 60.092 50.000 0.00 0.00 0.00 3.21
1271 1289 2.208872 AGTGCCTTATCCTTCCCACAT 58.791 47.619 0.00 0.00 0.00 3.21
1272 1290 1.668826 AGTGCCTTATCCTTCCCACA 58.331 50.000 0.00 0.00 0.00 4.17
1273 1291 3.039011 TCTAGTGCCTTATCCTTCCCAC 58.961 50.000 0.00 0.00 0.00 4.61
1274 1292 3.414759 TCTAGTGCCTTATCCTTCCCA 57.585 47.619 0.00 0.00 0.00 4.37
1275 1293 4.278975 CATCTAGTGCCTTATCCTTCCC 57.721 50.000 0.00 0.00 0.00 3.97
1288 1306 0.467384 CCAGGGTCCAGCATCTAGTG 59.533 60.000 0.00 0.00 0.00 2.74
1289 1307 0.339859 TCCAGGGTCCAGCATCTAGT 59.660 55.000 0.00 0.00 0.00 2.57
1290 1308 1.047002 CTCCAGGGTCCAGCATCTAG 58.953 60.000 0.00 0.00 0.00 2.43
1291 1309 0.636647 TCTCCAGGGTCCAGCATCTA 59.363 55.000 0.00 0.00 0.00 1.98
1292 1310 0.030297 ATCTCCAGGGTCCAGCATCT 60.030 55.000 0.00 0.00 0.00 2.90
1293 1311 0.842635 AATCTCCAGGGTCCAGCATC 59.157 55.000 0.00 0.00 0.00 3.91
1294 1312 0.842635 GAATCTCCAGGGTCCAGCAT 59.157 55.000 0.00 0.00 0.00 3.79
1295 1313 0.547471 TGAATCTCCAGGGTCCAGCA 60.547 55.000 0.00 0.00 0.00 4.41
1296 1314 0.620556 TTGAATCTCCAGGGTCCAGC 59.379 55.000 0.00 0.00 0.00 4.85
1297 1315 1.630369 TGTTGAATCTCCAGGGTCCAG 59.370 52.381 0.00 0.00 0.00 3.86
1298 1316 1.741028 TGTTGAATCTCCAGGGTCCA 58.259 50.000 0.00 0.00 0.00 4.02
1299 1317 2.879103 TTGTTGAATCTCCAGGGTCC 57.121 50.000 0.00 0.00 0.00 4.46
1300 1318 4.640647 GGTTATTGTTGAATCTCCAGGGTC 59.359 45.833 0.00 0.00 0.00 4.46
1301 1319 4.292306 AGGTTATTGTTGAATCTCCAGGGT 59.708 41.667 0.00 0.00 0.00 4.34
1302 1320 4.860022 AGGTTATTGTTGAATCTCCAGGG 58.140 43.478 0.00 0.00 0.00 4.45
1303 1321 6.840780 AAAGGTTATTGTTGAATCTCCAGG 57.159 37.500 0.00 0.00 0.00 4.45
1304 1322 9.014297 ACTAAAAGGTTATTGTTGAATCTCCAG 57.986 33.333 0.00 0.00 0.00 3.86
1305 1323 8.934023 ACTAAAAGGTTATTGTTGAATCTCCA 57.066 30.769 0.00 0.00 0.00 3.86
1312 1330 9.238368 CCTCCATTACTAAAAGGTTATTGTTGA 57.762 33.333 0.00 0.00 0.00 3.18
1313 1331 9.238368 TCCTCCATTACTAAAAGGTTATTGTTG 57.762 33.333 0.00 0.00 0.00 3.33
1314 1332 9.990868 ATCCTCCATTACTAAAAGGTTATTGTT 57.009 29.630 0.00 0.00 0.00 2.83
1315 1333 9.990868 AATCCTCCATTACTAAAAGGTTATTGT 57.009 29.630 0.00 0.00 0.00 2.71
1319 1337 9.816787 ACAAAATCCTCCATTACTAAAAGGTTA 57.183 29.630 0.00 0.00 0.00 2.85
1320 1338 8.585018 CACAAAATCCTCCATTACTAAAAGGTT 58.415 33.333 0.00 0.00 0.00 3.50
1321 1339 7.309805 GCACAAAATCCTCCATTACTAAAAGGT 60.310 37.037 0.00 0.00 0.00 3.50
1322 1340 7.035612 GCACAAAATCCTCCATTACTAAAAGG 58.964 38.462 0.00 0.00 0.00 3.11
1323 1341 7.035612 GGCACAAAATCCTCCATTACTAAAAG 58.964 38.462 0.00 0.00 0.00 2.27
1324 1342 6.349777 CGGCACAAAATCCTCCATTACTAAAA 60.350 38.462 0.00 0.00 0.00 1.52
1325 1343 5.124776 CGGCACAAAATCCTCCATTACTAAA 59.875 40.000 0.00 0.00 0.00 1.85
1326 1344 4.638421 CGGCACAAAATCCTCCATTACTAA 59.362 41.667 0.00 0.00 0.00 2.24
1327 1345 4.080807 TCGGCACAAAATCCTCCATTACTA 60.081 41.667 0.00 0.00 0.00 1.82
1328 1346 3.016736 CGGCACAAAATCCTCCATTACT 58.983 45.455 0.00 0.00 0.00 2.24
1329 1347 3.013921 TCGGCACAAAATCCTCCATTAC 58.986 45.455 0.00 0.00 0.00 1.89
1330 1348 3.278574 CTCGGCACAAAATCCTCCATTA 58.721 45.455 0.00 0.00 0.00 1.90
1331 1349 2.094675 CTCGGCACAAAATCCTCCATT 58.905 47.619 0.00 0.00 0.00 3.16
1332 1350 1.004745 ACTCGGCACAAAATCCTCCAT 59.995 47.619 0.00 0.00 0.00 3.41
1333 1351 0.400213 ACTCGGCACAAAATCCTCCA 59.600 50.000 0.00 0.00 0.00 3.86
1334 1352 2.093658 TCTACTCGGCACAAAATCCTCC 60.094 50.000 0.00 0.00 0.00 4.30
1335 1353 3.247006 TCTACTCGGCACAAAATCCTC 57.753 47.619 0.00 0.00 0.00 3.71
1336 1354 3.008049 AGTTCTACTCGGCACAAAATCCT 59.992 43.478 0.00 0.00 0.00 3.24
1337 1355 3.335579 AGTTCTACTCGGCACAAAATCC 58.664 45.455 0.00 0.00 0.00 3.01
1338 1356 7.201145 TCTATAGTTCTACTCGGCACAAAATC 58.799 38.462 0.00 0.00 0.00 2.17
1339 1357 7.108841 TCTATAGTTCTACTCGGCACAAAAT 57.891 36.000 0.00 0.00 0.00 1.82
1340 1358 6.519679 TCTATAGTTCTACTCGGCACAAAA 57.480 37.500 0.00 0.00 0.00 2.44
1341 1359 6.320418 TCATCTATAGTTCTACTCGGCACAAA 59.680 38.462 0.00 0.00 0.00 2.83
1342 1360 5.826208 TCATCTATAGTTCTACTCGGCACAA 59.174 40.000 0.00 0.00 0.00 3.33
1343 1361 5.374071 TCATCTATAGTTCTACTCGGCACA 58.626 41.667 0.00 0.00 0.00 4.57
1344 1362 5.470777 ACTCATCTATAGTTCTACTCGGCAC 59.529 44.000 0.00 0.00 0.00 5.01
1345 1363 5.622180 ACTCATCTATAGTTCTACTCGGCA 58.378 41.667 0.00 0.00 0.00 5.69
1346 1364 6.183360 CGTACTCATCTATAGTTCTACTCGGC 60.183 46.154 0.00 0.00 0.00 5.54
1347 1365 7.089538 TCGTACTCATCTATAGTTCTACTCGG 58.910 42.308 0.00 0.00 0.00 4.63
1348 1366 8.518151 TTCGTACTCATCTATAGTTCTACTCG 57.482 38.462 0.00 0.41 0.00 4.18
1361 1379 9.530633 GGTATTGTCTTAAATTCGTACTCATCT 57.469 33.333 0.00 0.00 0.00 2.90
1362 1380 9.530633 AGGTATTGTCTTAAATTCGTACTCATC 57.469 33.333 0.00 0.00 0.00 2.92
1369 1387 9.675464 TCCAAATAGGTATTGTCTTAAATTCGT 57.325 29.630 0.00 0.00 39.02 3.85
1376 1394 9.998106 GCTCTAATCCAAATAGGTATTGTCTTA 57.002 33.333 0.00 0.00 39.02 2.10
1377 1395 8.718656 AGCTCTAATCCAAATAGGTATTGTCTT 58.281 33.333 0.00 0.00 39.02 3.01
1378 1396 8.268878 AGCTCTAATCCAAATAGGTATTGTCT 57.731 34.615 0.00 0.00 39.02 3.41
1379 1397 8.910351 AAGCTCTAATCCAAATAGGTATTGTC 57.090 34.615 0.00 0.00 39.02 3.18
1382 1400 9.965902 CCATAAGCTCTAATCCAAATAGGTATT 57.034 33.333 0.00 0.00 39.02 1.89
1383 1401 8.552296 CCCATAAGCTCTAATCCAAATAGGTAT 58.448 37.037 0.00 0.00 39.02 2.73
1384 1402 7.737607 TCCCATAAGCTCTAATCCAAATAGGTA 59.262 37.037 0.00 0.00 39.02 3.08
1385 1403 6.562608 TCCCATAAGCTCTAATCCAAATAGGT 59.437 38.462 0.00 0.00 39.02 3.08
1386 1404 7.020827 TCCCATAAGCTCTAATCCAAATAGG 57.979 40.000 0.00 0.00 39.47 2.57
1387 1405 9.171877 GAATCCCATAAGCTCTAATCCAAATAG 57.828 37.037 0.00 0.00 0.00 1.73
1388 1406 8.109634 GGAATCCCATAAGCTCTAATCCAAATA 58.890 37.037 0.00 0.00 0.00 1.40
1389 1407 6.950619 GGAATCCCATAAGCTCTAATCCAAAT 59.049 38.462 0.00 0.00 0.00 2.32
1390 1408 6.126215 TGGAATCCCATAAGCTCTAATCCAAA 60.126 38.462 0.00 0.00 37.58 3.28
1391 1409 5.372363 TGGAATCCCATAAGCTCTAATCCAA 59.628 40.000 0.00 0.00 37.58 3.53
1392 1410 4.913355 TGGAATCCCATAAGCTCTAATCCA 59.087 41.667 0.00 0.00 37.58 3.41
1393 1411 5.505181 TGGAATCCCATAAGCTCTAATCC 57.495 43.478 0.00 0.00 37.58 3.01
1394 1412 6.376581 CCATTGGAATCCCATAAGCTCTAATC 59.623 42.308 0.00 0.00 43.12 1.75
1395 1413 6.251471 CCATTGGAATCCCATAAGCTCTAAT 58.749 40.000 0.00 0.00 43.12 1.73
1396 1414 5.458069 CCCATTGGAATCCCATAAGCTCTAA 60.458 44.000 3.62 0.00 43.12 2.10
1397 1415 4.043310 CCCATTGGAATCCCATAAGCTCTA 59.957 45.833 3.62 0.00 43.12 2.43
1398 1416 3.181425 CCCATTGGAATCCCATAAGCTCT 60.181 47.826 3.62 0.00 43.12 4.09
1399 1417 3.160269 CCCATTGGAATCCCATAAGCTC 58.840 50.000 3.62 0.00 43.12 4.09
1400 1418 2.158264 CCCCATTGGAATCCCATAAGCT 60.158 50.000 3.62 0.00 43.12 3.74
1401 1419 2.158325 TCCCCATTGGAATCCCATAAGC 60.158 50.000 3.62 0.00 43.12 3.09
1402 1420 3.901570 TCCCCATTGGAATCCCATAAG 57.098 47.619 3.62 0.00 43.12 1.73
1413 1431 2.076207 TTGCTCATCATCCCCATTGG 57.924 50.000 0.00 0.00 0.00 3.16
1414 1432 2.761767 TGTTTGCTCATCATCCCCATTG 59.238 45.455 0.00 0.00 0.00 2.82
1415 1433 2.762327 GTGTTTGCTCATCATCCCCATT 59.238 45.455 0.00 0.00 0.00 3.16
1416 1434 2.024655 AGTGTTTGCTCATCATCCCCAT 60.025 45.455 0.00 0.00 0.00 4.00
1417 1435 1.355381 AGTGTTTGCTCATCATCCCCA 59.645 47.619 0.00 0.00 0.00 4.96
1418 1436 2.134789 AGTGTTTGCTCATCATCCCC 57.865 50.000 0.00 0.00 0.00 4.81
1419 1437 3.878778 AGTAGTGTTTGCTCATCATCCC 58.121 45.455 0.00 0.00 0.00 3.85
1420 1438 5.053145 CCTAGTAGTGTTTGCTCATCATCC 58.947 45.833 0.00 0.00 0.00 3.51
1421 1439 5.053145 CCCTAGTAGTGTTTGCTCATCATC 58.947 45.833 0.00 0.00 0.00 2.92
1422 1440 4.716784 TCCCTAGTAGTGTTTGCTCATCAT 59.283 41.667 0.00 0.00 0.00 2.45
1423 1441 4.093743 TCCCTAGTAGTGTTTGCTCATCA 58.906 43.478 0.00 0.00 0.00 3.07
1424 1442 4.737855 TCCCTAGTAGTGTTTGCTCATC 57.262 45.455 0.00 0.00 0.00 2.92
1425 1443 5.499004 TTTCCCTAGTAGTGTTTGCTCAT 57.501 39.130 0.00 0.00 0.00 2.90
1426 1444 4.967084 TTTCCCTAGTAGTGTTTGCTCA 57.033 40.909 0.00 0.00 0.00 4.26
1427 1445 4.154375 GCTTTTCCCTAGTAGTGTTTGCTC 59.846 45.833 0.00 0.00 0.00 4.26
1428 1446 4.072839 GCTTTTCCCTAGTAGTGTTTGCT 58.927 43.478 0.00 0.00 0.00 3.91
1429 1447 3.190744 GGCTTTTCCCTAGTAGTGTTTGC 59.809 47.826 0.00 0.00 0.00 3.68
1455 1473 1.448893 CCTAAAACCCGCGCTGCTA 60.449 57.895 5.56 0.00 0.00 3.49
1546 1564 7.610692 GCTATCCATGTATAGTAGTAGTGTGGA 59.389 40.741 7.11 0.00 37.60 4.02
1557 1575 4.142359 GCGCTACAGCTATCCATGTATAGT 60.142 45.833 0.00 0.00 39.32 2.12
1906 1926 7.598869 TCTCACGTATATCATTGTTTAGATGGC 59.401 37.037 0.00 0.00 0.00 4.40
2061 2081 3.515316 AACGAGTGGCCGGAGTGTG 62.515 63.158 5.05 0.00 0.00 3.82
2088 2108 4.410400 AAGTGCTACGCCAGGGGC 62.410 66.667 2.65 0.00 46.75 5.80
2090 2110 0.741221 GAAGAAGTGCTACGCCAGGG 60.741 60.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.