Multiple sequence alignment - TraesCS6B01G374800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G374800 chr6B 100.000 3395 0 0 1 3395 648259165 648255771 0.000000e+00 6270
1 TraesCS6B01G374800 chr6D 89.403 2595 165 42 546 3081 429946596 429944053 0.000000e+00 3168
2 TraesCS6B01G374800 chr6D 92.947 2155 128 10 944 3081 429895440 429893293 0.000000e+00 3116
3 TraesCS6B01G374800 chr6D 92.713 1633 102 8 733 2363 430365845 430364228 0.000000e+00 2340
4 TraesCS6B01G374800 chr6D 91.045 670 40 7 2425 3081 430364221 430363559 0.000000e+00 887
5 TraesCS6B01G374800 chr6D 84.958 472 34 20 184 624 430366469 430366004 8.640000e-121 444
6 TraesCS6B01G374800 chr6D 90.672 268 25 0 1963 2230 430244999 430245266 1.160000e-94 357
7 TraesCS6B01G374800 chr6D 86.786 280 20 5 655 928 429896766 429896498 2.560000e-76 296
8 TraesCS6B01G374800 chr5B 88.073 1853 154 38 734 2554 609845870 609844053 0.000000e+00 2135
9 TraesCS6B01G374800 chr7B 91.257 183 14 2 1 182 581353331 581353512 7.270000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G374800 chr6B 648255771 648259165 3394 True 6270.000000 6270 100.0000 1 3395 1 chr6B.!!$R1 3394
1 TraesCS6B01G374800 chr6D 429944053 429946596 2543 True 3168.000000 3168 89.4030 546 3081 1 chr6D.!!$R1 2535
2 TraesCS6B01G374800 chr6D 429893293 429896766 3473 True 1706.000000 3116 89.8665 655 3081 2 chr6D.!!$R2 2426
3 TraesCS6B01G374800 chr6D 430363559 430366469 2910 True 1223.666667 2340 89.5720 184 3081 3 chr6D.!!$R3 2897
4 TraesCS6B01G374800 chr5B 609844053 609845870 1817 True 2135.000000 2135 88.0730 734 2554 1 chr5B.!!$R1 1820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.035152 GGGTCCCCCGTAAACGAATT 60.035 55.0 3.65 0.0 43.02 2.17 F
1687 2868 0.108520 GTATTTGGCGTCGAGGTGGA 60.109 55.0 7.01 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 3101 0.761323 TGACGACCCACAGGAAAGGA 60.761 55.0 0.0 0.0 36.73 3.36 R
2577 3803 0.029300 TGCAAGCTGTTTCACTTCGC 59.971 50.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.794222 GGTTTGATTCCTCGTGGCG 59.206 57.895 0.00 0.00 0.00 5.69
19 20 1.134694 GTTTGATTCCTCGTGGCGC 59.865 57.895 0.00 0.00 0.00 6.53
20 21 1.302112 TTTGATTCCTCGTGGCGCA 60.302 52.632 10.83 0.00 0.00 6.09
21 22 1.573829 TTTGATTCCTCGTGGCGCAC 61.574 55.000 10.83 4.68 0.00 5.34
22 23 2.125512 GATTCCTCGTGGCGCACT 60.126 61.111 10.83 0.00 31.34 4.40
23 24 1.141019 GATTCCTCGTGGCGCACTA 59.859 57.895 10.83 0.00 31.34 2.74
24 25 0.249489 GATTCCTCGTGGCGCACTAT 60.249 55.000 10.83 0.00 31.34 2.12
25 26 0.178068 ATTCCTCGTGGCGCACTATT 59.822 50.000 10.83 0.00 31.34 1.73
26 27 0.036765 TTCCTCGTGGCGCACTATTT 60.037 50.000 10.83 0.00 31.34 1.40
27 28 0.036765 TCCTCGTGGCGCACTATTTT 60.037 50.000 10.83 0.00 31.34 1.82
28 29 0.802494 CCTCGTGGCGCACTATTTTT 59.198 50.000 10.83 0.00 31.34 1.94
50 51 5.699097 TTTCTTGGACATTTTCTTACCGG 57.301 39.130 0.00 0.00 0.00 5.28
51 52 3.078837 TCTTGGACATTTTCTTACCGGC 58.921 45.455 0.00 0.00 0.00 6.13
52 53 1.444836 TGGACATTTTCTTACCGGCG 58.555 50.000 0.00 0.00 0.00 6.46
53 54 0.098200 GGACATTTTCTTACCGGCGC 59.902 55.000 0.00 0.00 0.00 6.53
54 55 0.247537 GACATTTTCTTACCGGCGCG 60.248 55.000 0.00 0.00 0.00 6.86
70 71 2.574929 CGGGCTGTTGGTACGCTA 59.425 61.111 0.00 0.00 0.00 4.26
71 72 1.079681 CGGGCTGTTGGTACGCTAA 60.080 57.895 0.00 0.00 0.00 3.09
72 73 0.461339 CGGGCTGTTGGTACGCTAAT 60.461 55.000 0.00 0.00 0.00 1.73
73 74 1.014352 GGGCTGTTGGTACGCTAATG 58.986 55.000 0.00 0.00 0.00 1.90
74 75 1.677820 GGGCTGTTGGTACGCTAATGT 60.678 52.381 0.00 0.00 0.00 2.71
75 76 1.396996 GGCTGTTGGTACGCTAATGTG 59.603 52.381 0.00 0.00 0.00 3.21
76 77 1.202031 GCTGTTGGTACGCTAATGTGC 60.202 52.381 0.00 0.00 0.00 4.57
77 78 2.346803 CTGTTGGTACGCTAATGTGCT 58.653 47.619 0.00 0.00 0.00 4.40
78 79 3.517602 CTGTTGGTACGCTAATGTGCTA 58.482 45.455 0.00 0.00 0.00 3.49
79 80 3.517602 TGTTGGTACGCTAATGTGCTAG 58.482 45.455 0.00 0.00 0.00 3.42
80 81 2.218953 TGGTACGCTAATGTGCTAGC 57.781 50.000 8.10 8.10 40.83 3.42
98 99 2.099062 GCATTGCGGCTCAGAACG 59.901 61.111 0.00 0.00 0.00 3.95
104 105 4.069232 CGGCTCAGAACGCCTGGA 62.069 66.667 0.00 0.00 45.37 3.86
105 106 2.347490 GGCTCAGAACGCCTGGAA 59.653 61.111 0.00 0.00 44.17 3.53
106 107 2.035442 GGCTCAGAACGCCTGGAAC 61.035 63.158 0.00 0.00 44.17 3.62
107 108 1.004440 GCTCAGAACGCCTGGAACT 60.004 57.895 0.00 0.00 43.12 3.01
108 109 1.294659 GCTCAGAACGCCTGGAACTG 61.295 60.000 0.00 0.79 43.12 3.16
109 110 0.318441 CTCAGAACGCCTGGAACTGA 59.682 55.000 0.00 5.26 43.12 3.41
110 111 0.976641 TCAGAACGCCTGGAACTGAT 59.023 50.000 0.00 0.00 43.12 2.90
111 112 1.081892 CAGAACGCCTGGAACTGATG 58.918 55.000 0.00 0.00 39.23 3.07
112 113 0.976641 AGAACGCCTGGAACTGATGA 59.023 50.000 0.00 0.00 0.00 2.92
113 114 1.347707 AGAACGCCTGGAACTGATGAA 59.652 47.619 0.00 0.00 0.00 2.57
114 115 2.151202 GAACGCCTGGAACTGATGAAA 58.849 47.619 0.00 0.00 0.00 2.69
115 116 2.270352 ACGCCTGGAACTGATGAAAA 57.730 45.000 0.00 0.00 0.00 2.29
116 117 2.795329 ACGCCTGGAACTGATGAAAAT 58.205 42.857 0.00 0.00 0.00 1.82
117 118 3.157087 ACGCCTGGAACTGATGAAAATT 58.843 40.909 0.00 0.00 0.00 1.82
118 119 4.331968 ACGCCTGGAACTGATGAAAATTA 58.668 39.130 0.00 0.00 0.00 1.40
119 120 4.949856 ACGCCTGGAACTGATGAAAATTAT 59.050 37.500 0.00 0.00 0.00 1.28
120 121 5.163622 ACGCCTGGAACTGATGAAAATTATG 60.164 40.000 0.00 0.00 0.00 1.90
121 122 5.163622 CGCCTGGAACTGATGAAAATTATGT 60.164 40.000 0.00 0.00 0.00 2.29
122 123 6.038356 GCCTGGAACTGATGAAAATTATGTG 58.962 40.000 0.00 0.00 0.00 3.21
123 124 6.567050 CCTGGAACTGATGAAAATTATGTGG 58.433 40.000 0.00 0.00 0.00 4.17
124 125 6.406177 CCTGGAACTGATGAAAATTATGTGGG 60.406 42.308 0.00 0.00 0.00 4.61
125 126 6.015918 TGGAACTGATGAAAATTATGTGGGT 58.984 36.000 0.00 0.00 0.00 4.51
126 127 6.152661 TGGAACTGATGAAAATTATGTGGGTC 59.847 38.462 0.00 0.00 0.00 4.46
127 128 6.405842 GGAACTGATGAAAATTATGTGGGTCC 60.406 42.308 0.00 0.00 0.00 4.46
128 129 4.956075 ACTGATGAAAATTATGTGGGTCCC 59.044 41.667 0.00 0.00 0.00 4.46
129 130 4.285863 TGATGAAAATTATGTGGGTCCCC 58.714 43.478 5.13 0.00 0.00 4.81
130 131 3.108847 TGAAAATTATGTGGGTCCCCC 57.891 47.619 5.13 0.00 45.71 5.40
139 140 3.067985 GGGTCCCCCGTAAACGAA 58.932 61.111 3.65 0.00 43.02 3.85
140 141 1.603842 GGGTCCCCCGTAAACGAAT 59.396 57.895 3.65 0.00 43.02 3.34
141 142 0.035152 GGGTCCCCCGTAAACGAATT 60.035 55.000 3.65 0.00 43.02 2.17
142 143 1.614051 GGGTCCCCCGTAAACGAATTT 60.614 52.381 3.65 0.00 43.02 1.82
143 144 2.161855 GGTCCCCCGTAAACGAATTTT 58.838 47.619 3.65 0.00 43.02 1.82
144 145 2.557924 GGTCCCCCGTAAACGAATTTTT 59.442 45.455 3.65 0.00 43.02 1.94
171 172 7.830099 GGAGAAACAATCCTCCATTCAATAT 57.170 36.000 0.00 0.00 46.28 1.28
172 173 8.242729 GGAGAAACAATCCTCCATTCAATATT 57.757 34.615 0.00 0.00 46.28 1.28
173 174 9.354673 GGAGAAACAATCCTCCATTCAATATTA 57.645 33.333 0.00 0.00 46.28 0.98
175 176 9.359653 AGAAACAATCCTCCATTCAATATTAGG 57.640 33.333 0.00 0.00 0.00 2.69
176 177 9.136323 GAAACAATCCTCCATTCAATATTAGGT 57.864 33.333 0.70 0.00 0.00 3.08
196 197 6.377327 AGGTAAAGACTTCAAACACACATG 57.623 37.500 0.00 0.00 0.00 3.21
217 218 8.230486 CACATGGTGAACTCTAATTTTGTACTC 58.770 37.037 0.00 0.00 35.23 2.59
223 224 9.366513 GTGAACTCTAATTTTGTACTCGTTTTC 57.633 33.333 0.00 0.00 0.00 2.29
318 320 9.981114 TTTTAAAGTTGATTCATCCTTTCTTCC 57.019 29.630 12.51 0.00 0.00 3.46
344 346 2.288886 ACTAAAACTGACCAGCGAGTCC 60.289 50.000 6.69 0.00 35.83 3.85
366 368 4.823442 CCTGTGCTAATTGAATCCTGCATA 59.177 41.667 0.00 1.39 32.98 3.14
400 402 8.798859 AGTTCTGCTTGTTCTTATCATACAAT 57.201 30.769 0.00 0.00 31.96 2.71
422 424 6.892658 ATGTAAATGCTTAGTTCAACCACA 57.107 33.333 0.00 0.00 0.00 4.17
436 438 3.507233 TCAACCACAAAGAAGCATCATCC 59.493 43.478 0.00 0.00 0.00 3.51
437 439 2.450476 ACCACAAAGAAGCATCATCCC 58.550 47.619 0.00 0.00 0.00 3.85
445 447 5.643421 AAGAAGCATCATCCCAGAATACT 57.357 39.130 0.00 0.00 0.00 2.12
451 453 5.954150 AGCATCATCCCAGAATACTGTTTTT 59.046 36.000 0.00 0.00 42.05 1.94
452 454 7.118723 AGCATCATCCCAGAATACTGTTTTTA 58.881 34.615 0.00 0.00 42.05 1.52
457 459 8.792633 TCATCCCAGAATACTGTTTTTAAAGTG 58.207 33.333 0.00 0.00 42.05 3.16
459 461 7.064229 TCCCAGAATACTGTTTTTAAAGTGGT 58.936 34.615 0.00 0.00 42.05 4.16
460 462 7.229907 TCCCAGAATACTGTTTTTAAAGTGGTC 59.770 37.037 0.00 0.00 42.05 4.02
467 469 5.298527 ACTGTTTTTAAAGTGGTCCTGTAGC 59.701 40.000 0.00 0.00 0.00 3.58
468 470 5.194432 TGTTTTTAAAGTGGTCCTGTAGCA 58.806 37.500 0.00 0.00 0.00 3.49
471 473 5.761165 TTTAAAGTGGTCCTGTAGCAAAC 57.239 39.130 0.00 0.00 37.33 2.93
473 475 3.508845 AAGTGGTCCTGTAGCAAACAT 57.491 42.857 0.00 0.00 37.50 2.71
474 476 4.634012 AAGTGGTCCTGTAGCAAACATA 57.366 40.909 0.00 0.00 37.50 2.29
484 511 5.647658 CCTGTAGCAAACATATGGAACTGAA 59.352 40.000 7.80 0.00 37.50 3.02
517 546 8.400947 CAACATATATTTCTCAGTCCTGTTTGG 58.599 37.037 0.00 0.00 37.10 3.28
520 549 2.550830 TTCTCAGTCCTGTTTGGCTC 57.449 50.000 0.00 0.00 35.26 4.70
521 550 0.318441 TCTCAGTCCTGTTTGGCTCG 59.682 55.000 0.00 0.00 35.26 5.03
522 551 0.318441 CTCAGTCCTGTTTGGCTCGA 59.682 55.000 0.00 0.00 35.26 4.04
532 561 1.132453 GTTTGGCTCGAAGTAATGGCC 59.868 52.381 0.00 0.00 42.73 5.36
537 566 1.599542 GCTCGAAGTAATGGCCATGAC 59.400 52.381 24.21 24.21 0.00 3.06
605 637 8.035394 CGCTTATCTGGTATTACAATAGACCAT 58.965 37.037 0.00 0.00 0.00 3.55
624 656 1.137594 TCCGGTCCCCCTCATTTTGT 61.138 55.000 0.00 0.00 0.00 2.83
625 657 0.965363 CCGGTCCCCCTCATTTTGTG 60.965 60.000 0.00 0.00 0.00 3.33
626 658 0.965363 CGGTCCCCCTCATTTTGTGG 60.965 60.000 0.00 0.00 0.00 4.17
724 826 3.888221 CGCAAATAATCGCGTGGC 58.112 55.556 5.77 0.00 46.23 5.01
725 827 1.061729 CGCAAATAATCGCGTGGCA 59.938 52.632 5.77 0.00 46.23 4.92
726 828 1.193665 CGCAAATAATCGCGTGGCAC 61.194 55.000 7.79 7.79 46.23 5.01
727 829 0.865639 GCAAATAATCGCGTGGCACC 60.866 55.000 12.86 4.00 0.00 5.01
728 830 0.248458 CAAATAATCGCGTGGCACCC 60.248 55.000 12.86 1.25 0.00 4.61
729 831 1.381165 AAATAATCGCGTGGCACCCC 61.381 55.000 12.86 2.27 0.00 4.95
730 832 2.544590 AATAATCGCGTGGCACCCCA 62.545 55.000 12.86 0.00 39.32 4.96
761 864 1.846849 TTATGGCCACAACACGCGTG 61.847 55.000 35.99 35.99 0.00 5.34
775 878 0.516877 CGCGTGGCTTGAATTTCAGA 59.483 50.000 0.00 0.00 0.00 3.27
886 1000 7.916552 ACGGTCACAGATAATGTATTTTAAGC 58.083 34.615 0.00 0.00 41.41 3.09
1022 2202 1.975363 GCAGAATCGGAGCACAGCAC 61.975 60.000 0.00 0.00 0.00 4.40
1077 2257 0.911769 ACATCAATCCGCTCCTCCAA 59.088 50.000 0.00 0.00 0.00 3.53
1296 2477 3.753434 ACGCTGGACGAGCTCCTG 61.753 66.667 8.47 0.25 46.64 3.86
1297 2478 4.504916 CGCTGGACGAGCTCCTGG 62.505 72.222 8.47 0.00 46.64 4.45
1308 2489 2.363018 CTCCTGGGCTCCGAGTCA 60.363 66.667 1.71 0.00 0.00 3.41
1310 2491 2.681778 CCTGGGCTCCGAGTCAGT 60.682 66.667 1.71 0.00 0.00 3.41
1687 2868 0.108520 GTATTTGGCGTCGAGGTGGA 60.109 55.000 7.01 0.00 0.00 4.02
1743 2924 2.434884 CTCGACAACCGCATGGCT 60.435 61.111 0.00 0.00 39.70 4.75
1744 2925 1.153647 CTCGACAACCGCATGGCTA 60.154 57.895 0.00 0.00 39.70 3.93
1854 3035 2.665603 GTCTCCTTCGGCAGCCTT 59.334 61.111 10.54 0.00 0.00 4.35
1956 3143 1.878656 CGTCCGAGACCTGGAAGCTT 61.879 60.000 0.00 0.00 37.23 3.74
1978 3165 3.296709 GAGGGCTTCGTCGGCAAGA 62.297 63.158 3.82 0.00 0.00 3.02
1979 3166 3.119096 GGGCTTCGTCGGCAAGAC 61.119 66.667 3.82 0.65 46.16 3.01
1993 3180 0.478507 CAAGACCAAGTCCAAGGGGT 59.521 55.000 0.00 0.00 36.05 4.95
2019 3206 1.450312 CTTCGTGACATGGAGCCCC 60.450 63.158 0.00 0.00 0.00 5.80
2059 3246 4.680237 CGGCAGTCGGGTGCTTCA 62.680 66.667 9.37 0.00 43.45 3.02
2071 3258 1.597578 TGCTTCATCACGCACTGCA 60.598 52.632 1.11 0.00 0.00 4.41
2098 3285 3.043419 CCACGATAGAGGCCCTCG 58.957 66.667 4.80 6.07 40.80 4.63
2145 3332 1.451028 GCAGTGATCAGACCAGCCC 60.451 63.158 0.00 0.00 0.00 5.19
2178 3365 2.179517 GTCGAGGACGTCTGGCAG 59.820 66.667 16.46 8.58 40.69 4.85
2220 3407 0.116342 TGGTCACCAAGGAGGAGCTA 59.884 55.000 0.00 1.98 41.22 3.32
2252 3439 1.068281 CAGAGAGGTCATGGACGATGG 59.932 57.143 0.00 0.00 32.65 3.51
2338 3525 0.671472 CAGCTCAGACCGCAACATCA 60.671 55.000 0.00 0.00 0.00 3.07
2428 3649 3.449377 AGCTAGTTTCCCTTGTCTCTAGC 59.551 47.826 12.23 12.23 45.79 3.42
2441 3662 5.689383 TGTCTCTAGCATTTGTGTTTTCC 57.311 39.130 0.00 0.00 0.00 3.13
2512 3736 5.585500 TGTTTGTACTACACGATTCTTGC 57.415 39.130 0.00 0.00 0.00 4.01
2567 3793 9.851686 ATGTTAATTATATGATGGACACAGTGT 57.148 29.630 5.68 5.68 0.00 3.55
2577 3803 0.381801 GACACAGTGTTGTTGGGCTG 59.618 55.000 7.86 0.00 34.62 4.85
2601 3827 4.388773 CGAAGTGAAACAGCTTGCACTATA 59.611 41.667 0.00 0.00 40.43 1.31
2715 3950 3.533146 TGGTCCCCAACAATCCTAGTAA 58.467 45.455 0.00 0.00 0.00 2.24
2738 3989 3.335579 GGTGTCAACCTTACTAGCCTTG 58.664 50.000 0.00 0.00 43.84 3.61
2740 3991 2.370519 TGTCAACCTTACTAGCCTTGCA 59.629 45.455 0.00 0.00 0.00 4.08
2760 4011 9.769093 CCTTGCAAGTTACAAGTATTAATGTAC 57.231 33.333 24.35 0.00 42.41 2.90
2857 4108 6.484643 AGGTTTCATCGAGATTGTGATTATGG 59.515 38.462 0.00 0.00 0.00 2.74
2858 4109 6.483307 GGTTTCATCGAGATTGTGATTATGGA 59.517 38.462 0.00 0.00 0.00 3.41
2892 4143 8.209917 GATCGAAATCCATAACTTAACAACCT 57.790 34.615 0.00 0.00 0.00 3.50
2931 4184 4.537751 CCTAGTCACTCTCTTGACCCATA 58.462 47.826 0.00 0.00 46.14 2.74
2940 4193 2.774234 CTCTTGACCCATACCTCCACAT 59.226 50.000 0.00 0.00 0.00 3.21
2967 4220 2.742372 ATTGCCGACGTGAGGTGC 60.742 61.111 0.00 0.00 0.00 5.01
2969 4222 2.731691 ATTGCCGACGTGAGGTGCTT 62.732 55.000 0.00 0.00 0.00 3.91
3000 4253 1.029408 GGTGCATGGTTGGCATCGTA 61.029 55.000 0.00 0.00 44.11 3.43
3010 4263 3.057174 GGTTGGCATCGTATGGTGAAAAA 60.057 43.478 0.00 0.00 0.00 1.94
3082 4335 8.888579 AACCTCTCACGACATAAAATTATAGG 57.111 34.615 0.00 0.00 0.00 2.57
3083 4336 8.246430 ACCTCTCACGACATAAAATTATAGGA 57.754 34.615 0.00 0.00 0.00 2.94
3084 4337 8.871125 ACCTCTCACGACATAAAATTATAGGAT 58.129 33.333 0.00 0.00 0.00 3.24
3103 4356 6.753913 AGGATATATCTGGCAAACTTGAGA 57.246 37.500 12.42 0.00 0.00 3.27
3104 4357 7.141758 AGGATATATCTGGCAAACTTGAGAA 57.858 36.000 12.42 0.00 0.00 2.87
3105 4358 7.222872 AGGATATATCTGGCAAACTTGAGAAG 58.777 38.462 12.42 0.00 0.00 2.85
3106 4359 6.072783 GGATATATCTGGCAAACTTGAGAAGC 60.073 42.308 12.42 0.00 0.00 3.86
3107 4360 2.645838 TCTGGCAAACTTGAGAAGCT 57.354 45.000 0.00 0.00 0.00 3.74
3108 4361 2.936202 TCTGGCAAACTTGAGAAGCTT 58.064 42.857 0.00 0.00 0.00 3.74
3109 4362 2.620115 TCTGGCAAACTTGAGAAGCTTG 59.380 45.455 2.10 0.00 37.58 4.01
3110 4363 2.620115 CTGGCAAACTTGAGAAGCTTGA 59.380 45.455 2.10 0.00 36.86 3.02
3111 4364 3.225104 TGGCAAACTTGAGAAGCTTGAT 58.775 40.909 2.10 0.00 36.86 2.57
3112 4365 3.638160 TGGCAAACTTGAGAAGCTTGATT 59.362 39.130 2.10 0.00 36.86 2.57
3113 4366 3.985925 GGCAAACTTGAGAAGCTTGATTG 59.014 43.478 2.10 1.34 36.86 2.67
3114 4367 4.500375 GGCAAACTTGAGAAGCTTGATTGT 60.500 41.667 2.10 0.00 36.86 2.71
3115 4368 5.278463 GGCAAACTTGAGAAGCTTGATTGTA 60.278 40.000 2.10 0.00 36.86 2.41
3116 4369 5.855395 GCAAACTTGAGAAGCTTGATTGTAG 59.145 40.000 2.10 0.00 36.86 2.74
3117 4370 6.514048 GCAAACTTGAGAAGCTTGATTGTAGT 60.514 38.462 2.10 0.00 36.86 2.73
3118 4371 6.551385 AACTTGAGAAGCTTGATTGTAGTG 57.449 37.500 2.10 0.00 0.00 2.74
3119 4372 4.999950 ACTTGAGAAGCTTGATTGTAGTGG 59.000 41.667 2.10 0.00 0.00 4.00
3120 4373 4.890158 TGAGAAGCTTGATTGTAGTGGA 57.110 40.909 2.10 0.00 0.00 4.02
3121 4374 5.227569 TGAGAAGCTTGATTGTAGTGGAA 57.772 39.130 2.10 0.00 0.00 3.53
3122 4375 4.997395 TGAGAAGCTTGATTGTAGTGGAAC 59.003 41.667 2.10 0.00 0.00 3.62
3123 4376 4.973168 AGAAGCTTGATTGTAGTGGAACA 58.027 39.130 2.10 0.00 41.43 3.18
3124 4377 5.564550 AGAAGCTTGATTGTAGTGGAACAT 58.435 37.500 2.10 0.00 44.52 2.71
3125 4378 6.006449 AGAAGCTTGATTGTAGTGGAACATT 58.994 36.000 2.10 0.00 44.52 2.71
3126 4379 7.168219 AGAAGCTTGATTGTAGTGGAACATTA 58.832 34.615 2.10 0.00 44.52 1.90
3136 4389 6.910536 GTAGTGGAACATTACCTCAAGATG 57.089 41.667 0.00 0.00 44.27 2.90
3137 4390 5.505181 AGTGGAACATTACCTCAAGATGT 57.495 39.130 0.00 0.00 44.52 3.06
3138 4391 5.491982 AGTGGAACATTACCTCAAGATGTC 58.508 41.667 0.00 0.00 44.52 3.06
3139 4392 5.013079 AGTGGAACATTACCTCAAGATGTCA 59.987 40.000 0.00 0.00 44.52 3.58
3140 4393 5.352569 GTGGAACATTACCTCAAGATGTCAG 59.647 44.000 0.00 0.00 44.52 3.51
3141 4394 5.248248 TGGAACATTACCTCAAGATGTCAGA 59.752 40.000 0.00 0.00 33.16 3.27
3142 4395 6.173339 GGAACATTACCTCAAGATGTCAGAA 58.827 40.000 0.00 0.00 33.16 3.02
3143 4396 6.314896 GGAACATTACCTCAAGATGTCAGAAG 59.685 42.308 0.00 0.00 33.16 2.85
3144 4397 5.181748 ACATTACCTCAAGATGTCAGAAGC 58.818 41.667 0.00 0.00 28.29 3.86
3145 4398 4.890158 TTACCTCAAGATGTCAGAAGCA 57.110 40.909 0.00 0.00 0.00 3.91
3146 4399 3.996921 ACCTCAAGATGTCAGAAGCAT 57.003 42.857 0.00 0.00 0.00 3.79
3147 4400 6.544928 TTACCTCAAGATGTCAGAAGCATA 57.455 37.500 0.00 0.00 0.00 3.14
3148 4401 5.627182 ACCTCAAGATGTCAGAAGCATAT 57.373 39.130 0.00 0.00 0.00 1.78
3149 4402 6.737720 ACCTCAAGATGTCAGAAGCATATA 57.262 37.500 0.00 0.00 0.00 0.86
3150 4403 7.313740 ACCTCAAGATGTCAGAAGCATATAT 57.686 36.000 0.00 0.00 0.00 0.86
3151 4404 7.743749 ACCTCAAGATGTCAGAAGCATATATT 58.256 34.615 0.00 0.00 0.00 1.28
3152 4405 7.660617 ACCTCAAGATGTCAGAAGCATATATTG 59.339 37.037 0.00 0.00 0.00 1.90
3153 4406 7.119407 CCTCAAGATGTCAGAAGCATATATTGG 59.881 40.741 0.00 0.00 0.00 3.16
3154 4407 7.738847 TCAAGATGTCAGAAGCATATATTGGA 58.261 34.615 0.00 0.00 0.00 3.53
3155 4408 8.380867 TCAAGATGTCAGAAGCATATATTGGAT 58.619 33.333 0.00 0.00 0.00 3.41
3156 4409 9.662947 CAAGATGTCAGAAGCATATATTGGATA 57.337 33.333 0.00 0.00 0.00 2.59
3174 4427 8.814038 ATTGGATATATAGAAACCATGGAAGC 57.186 34.615 21.47 6.56 0.00 3.86
3175 4428 7.574021 TGGATATATAGAAACCATGGAAGCT 57.426 36.000 21.47 13.91 0.00 3.74
3176 4429 7.624549 TGGATATATAGAAACCATGGAAGCTC 58.375 38.462 21.47 8.78 0.00 4.09
3177 4430 7.459125 TGGATATATAGAAACCATGGAAGCTCT 59.541 37.037 21.47 15.44 0.00 4.09
3178 4431 8.982723 GGATATATAGAAACCATGGAAGCTCTA 58.017 37.037 21.47 17.00 0.00 2.43
3180 4433 9.775539 ATATATAGAAACCATGGAAGCTCTAGA 57.224 33.333 21.47 14.69 0.00 2.43
3181 4434 4.751767 AGAAACCATGGAAGCTCTAGAG 57.248 45.455 21.47 15.85 0.00 2.43
3182 4435 4.357325 AGAAACCATGGAAGCTCTAGAGA 58.643 43.478 24.24 1.91 0.00 3.10
3183 4436 4.161377 AGAAACCATGGAAGCTCTAGAGAC 59.839 45.833 24.24 14.17 0.00 3.36
3184 4437 2.028130 ACCATGGAAGCTCTAGAGACG 58.972 52.381 24.24 0.00 0.00 4.18
3185 4438 2.028130 CCATGGAAGCTCTAGAGACGT 58.972 52.381 24.24 12.46 0.00 4.34
3186 4439 3.215151 CCATGGAAGCTCTAGAGACGTA 58.785 50.000 24.24 5.37 0.00 3.57
3187 4440 3.252215 CCATGGAAGCTCTAGAGACGTAG 59.748 52.174 24.24 6.08 0.00 3.51
3264 4517 8.465273 AAAGAATATATTAGGAACTTGGCACC 57.535 34.615 0.00 0.00 41.75 5.01
3265 4518 6.543735 AGAATATATTAGGAACTTGGCACCC 58.456 40.000 0.00 0.00 41.75 4.61
3266 4519 5.922960 ATATATTAGGAACTTGGCACCCA 57.077 39.130 0.00 0.00 41.75 4.51
3267 4520 2.990740 ATTAGGAACTTGGCACCCAA 57.009 45.000 0.00 0.00 41.69 4.12
3268 4521 2.757894 TTAGGAACTTGGCACCCAAA 57.242 45.000 0.00 0.00 43.44 3.28
3269 4522 2.757894 TAGGAACTTGGCACCCAAAA 57.242 45.000 0.00 0.00 43.44 2.44
3270 4523 2.101640 AGGAACTTGGCACCCAAAAT 57.898 45.000 0.00 0.00 43.44 1.82
3271 4524 1.693606 AGGAACTTGGCACCCAAAATG 59.306 47.619 0.00 0.00 43.44 2.32
3272 4525 1.416030 GGAACTTGGCACCCAAAATGT 59.584 47.619 0.00 0.00 43.44 2.71
3273 4526 2.630580 GGAACTTGGCACCCAAAATGTA 59.369 45.455 0.00 0.00 43.44 2.29
3274 4527 3.070302 GGAACTTGGCACCCAAAATGTAA 59.930 43.478 0.00 0.00 43.44 2.41
3275 4528 4.306600 GAACTTGGCACCCAAAATGTAAG 58.693 43.478 0.00 0.00 43.44 2.34
3276 4529 3.304829 ACTTGGCACCCAAAATGTAAGT 58.695 40.909 0.00 0.00 43.44 2.24
3277 4530 3.069443 ACTTGGCACCCAAAATGTAAGTG 59.931 43.478 0.00 0.00 43.44 3.16
3282 4535 4.164822 CACCCAAAATGTAAGTGCAGAG 57.835 45.455 0.00 0.00 0.00 3.35
3283 4536 3.820467 CACCCAAAATGTAAGTGCAGAGA 59.180 43.478 0.00 0.00 0.00 3.10
3284 4537 4.460382 CACCCAAAATGTAAGTGCAGAGAT 59.540 41.667 0.00 0.00 0.00 2.75
3285 4538 5.047802 CACCCAAAATGTAAGTGCAGAGATT 60.048 40.000 0.00 0.00 0.00 2.40
3286 4539 5.183904 ACCCAAAATGTAAGTGCAGAGATTC 59.816 40.000 0.00 0.00 0.00 2.52
3287 4540 5.183713 CCCAAAATGTAAGTGCAGAGATTCA 59.816 40.000 0.00 0.00 0.00 2.57
3288 4541 6.127535 CCCAAAATGTAAGTGCAGAGATTCAT 60.128 38.462 0.00 0.00 0.00 2.57
3289 4542 6.750501 CCAAAATGTAAGTGCAGAGATTCATG 59.249 38.462 0.00 0.00 0.00 3.07
3290 4543 7.362315 CCAAAATGTAAGTGCAGAGATTCATGA 60.362 37.037 0.00 0.00 0.00 3.07
3291 4544 7.876936 AAATGTAAGTGCAGAGATTCATGAT 57.123 32.000 0.00 0.00 0.00 2.45
3292 4545 7.493743 AATGTAAGTGCAGAGATTCATGATC 57.506 36.000 0.00 0.00 34.83 2.92
3293 4546 5.981174 TGTAAGTGCAGAGATTCATGATCA 58.019 37.500 0.00 0.00 37.22 2.92
3294 4547 6.408869 TGTAAGTGCAGAGATTCATGATCAA 58.591 36.000 0.00 0.00 37.22 2.57
3295 4548 5.814764 AAGTGCAGAGATTCATGATCAAC 57.185 39.130 0.00 0.00 37.22 3.18
3296 4549 4.840271 AGTGCAGAGATTCATGATCAACA 58.160 39.130 0.00 0.00 37.22 3.33
3297 4550 5.250982 AGTGCAGAGATTCATGATCAACAA 58.749 37.500 0.00 0.00 37.22 2.83
3298 4551 5.708697 AGTGCAGAGATTCATGATCAACAAA 59.291 36.000 0.00 0.00 37.22 2.83
3299 4552 5.798934 GTGCAGAGATTCATGATCAACAAAC 59.201 40.000 0.00 0.00 37.22 2.93
3300 4553 5.106038 TGCAGAGATTCATGATCAACAAACC 60.106 40.000 0.00 0.00 37.22 3.27
3301 4554 5.566623 CAGAGATTCATGATCAACAAACCG 58.433 41.667 0.00 0.00 37.22 4.44
3302 4555 5.122869 CAGAGATTCATGATCAACAAACCGT 59.877 40.000 0.00 0.00 37.22 4.83
3303 4556 6.313658 CAGAGATTCATGATCAACAAACCGTA 59.686 38.462 0.00 0.00 37.22 4.02
3304 4557 6.313905 AGAGATTCATGATCAACAAACCGTAC 59.686 38.462 0.00 0.00 37.22 3.67
3305 4558 5.937540 AGATTCATGATCAACAAACCGTACA 59.062 36.000 0.00 0.00 37.22 2.90
3306 4559 6.429692 AGATTCATGATCAACAAACCGTACAA 59.570 34.615 0.00 0.00 37.22 2.41
3307 4560 6.378710 TTCATGATCAACAAACCGTACAAA 57.621 33.333 0.00 0.00 0.00 2.83
3308 4561 6.378710 TCATGATCAACAAACCGTACAAAA 57.621 33.333 0.00 0.00 0.00 2.44
3309 4562 6.796426 TCATGATCAACAAACCGTACAAAAA 58.204 32.000 0.00 0.00 0.00 1.94
3310 4563 6.915300 TCATGATCAACAAACCGTACAAAAAG 59.085 34.615 0.00 0.00 0.00 2.27
3311 4564 6.438259 TGATCAACAAACCGTACAAAAAGA 57.562 33.333 0.00 0.00 0.00 2.52
3312 4565 6.853720 TGATCAACAAACCGTACAAAAAGAA 58.146 32.000 0.00 0.00 0.00 2.52
3313 4566 6.970043 TGATCAACAAACCGTACAAAAAGAAG 59.030 34.615 0.00 0.00 0.00 2.85
3314 4567 6.497785 TCAACAAACCGTACAAAAAGAAGA 57.502 33.333 0.00 0.00 0.00 2.87
3315 4568 6.548171 TCAACAAACCGTACAAAAAGAAGAG 58.452 36.000 0.00 0.00 0.00 2.85
3316 4569 6.372103 TCAACAAACCGTACAAAAAGAAGAGA 59.628 34.615 0.00 0.00 0.00 3.10
3317 4570 6.937436 ACAAACCGTACAAAAAGAAGAGAT 57.063 33.333 0.00 0.00 0.00 2.75
3318 4571 6.725246 ACAAACCGTACAAAAAGAAGAGATG 58.275 36.000 0.00 0.00 0.00 2.90
3319 4572 6.540914 ACAAACCGTACAAAAAGAAGAGATGA 59.459 34.615 0.00 0.00 0.00 2.92
3320 4573 7.066525 ACAAACCGTACAAAAAGAAGAGATGAA 59.933 33.333 0.00 0.00 0.00 2.57
3321 4574 6.787085 ACCGTACAAAAAGAAGAGATGAAG 57.213 37.500 0.00 0.00 0.00 3.02
3322 4575 6.289064 ACCGTACAAAAAGAAGAGATGAAGT 58.711 36.000 0.00 0.00 0.00 3.01
3323 4576 7.439381 ACCGTACAAAAAGAAGAGATGAAGTA 58.561 34.615 0.00 0.00 0.00 2.24
3324 4577 7.929785 ACCGTACAAAAAGAAGAGATGAAGTAA 59.070 33.333 0.00 0.00 0.00 2.24
3325 4578 8.770828 CCGTACAAAAAGAAGAGATGAAGTAAA 58.229 33.333 0.00 0.00 0.00 2.01
3326 4579 9.582223 CGTACAAAAAGAAGAGATGAAGTAAAC 57.418 33.333 0.00 0.00 0.00 2.01
3354 4607 9.690913 ATCTTTAAGAGGACATGAATGAATCAA 57.309 29.630 0.00 0.00 42.54 2.57
3355 4608 9.519191 TCTTTAAGAGGACATGAATGAATCAAA 57.481 29.630 0.00 0.00 42.54 2.69
3356 4609 9.784680 CTTTAAGAGGACATGAATGAATCAAAG 57.215 33.333 0.00 0.00 42.54 2.77
3357 4610 6.770746 AAGAGGACATGAATGAATCAAAGG 57.229 37.500 0.00 0.00 42.54 3.11
3358 4611 4.643784 AGAGGACATGAATGAATCAAAGGC 59.356 41.667 0.00 0.00 42.54 4.35
3359 4612 4.607239 AGGACATGAATGAATCAAAGGCT 58.393 39.130 0.00 0.00 42.54 4.58
3360 4613 5.759059 AGGACATGAATGAATCAAAGGCTA 58.241 37.500 0.00 0.00 42.54 3.93
3361 4614 6.189859 AGGACATGAATGAATCAAAGGCTAA 58.810 36.000 0.00 0.00 42.54 3.09
3362 4615 6.664816 AGGACATGAATGAATCAAAGGCTAAA 59.335 34.615 0.00 0.00 42.54 1.85
3363 4616 7.343833 AGGACATGAATGAATCAAAGGCTAAAT 59.656 33.333 0.00 0.00 42.54 1.40
3364 4617 7.437267 GGACATGAATGAATCAAAGGCTAAATG 59.563 37.037 0.00 0.00 42.54 2.32
3365 4618 7.844009 ACATGAATGAATCAAAGGCTAAATGT 58.156 30.769 0.00 0.00 42.54 2.71
3366 4619 8.316214 ACATGAATGAATCAAAGGCTAAATGTT 58.684 29.630 0.00 0.00 42.54 2.71
3367 4620 9.158233 CATGAATGAATCAAAGGCTAAATGTTT 57.842 29.630 0.00 0.00 42.54 2.83
3380 4633 9.981114 AAGGCTAAATGTTTATGTAATAATGGC 57.019 29.630 0.00 0.00 38.83 4.40
3381 4634 9.367160 AGGCTAAATGTTTATGTAATAATGGCT 57.633 29.630 0.00 0.00 38.83 4.75
3386 4639 9.875708 AAATGTTTATGTAATAATGGCTAGGGA 57.124 29.630 0.00 0.00 38.83 4.20
3387 4640 8.863872 ATGTTTATGTAATAATGGCTAGGGAC 57.136 34.615 0.00 0.00 38.83 4.46
3388 4641 6.932400 TGTTTATGTAATAATGGCTAGGGACG 59.068 38.462 0.00 0.00 38.83 4.79
3389 4642 4.553330 ATGTAATAATGGCTAGGGACGG 57.447 45.455 0.00 0.00 0.00 4.79
3390 4643 3.578978 TGTAATAATGGCTAGGGACGGA 58.421 45.455 0.00 0.00 0.00 4.69
3391 4644 4.164981 TGTAATAATGGCTAGGGACGGAT 58.835 43.478 0.00 0.00 0.00 4.18
3392 4645 4.595781 TGTAATAATGGCTAGGGACGGATT 59.404 41.667 0.00 0.00 0.00 3.01
3393 4646 3.983044 ATAATGGCTAGGGACGGATTC 57.017 47.619 0.00 0.00 0.00 2.52
3394 4647 1.507140 AATGGCTAGGGACGGATTCA 58.493 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.794222 CGCCACGAGGAATCAAACC 59.206 57.895 1.86 0.00 36.89 3.27
1 2 1.134694 GCGCCACGAGGAATCAAAC 59.865 57.895 1.86 0.00 36.89 2.93
2 3 1.302112 TGCGCCACGAGGAATCAAA 60.302 52.632 4.18 0.00 36.89 2.69
3 4 2.032634 GTGCGCCACGAGGAATCAA 61.033 57.895 4.18 0.00 36.89 2.57
4 5 1.600511 TAGTGCGCCACGAGGAATCA 61.601 55.000 4.18 0.00 39.64 2.57
5 6 0.249489 ATAGTGCGCCACGAGGAATC 60.249 55.000 4.18 0.00 39.64 2.52
6 7 0.178068 AATAGTGCGCCACGAGGAAT 59.822 50.000 4.18 0.00 39.64 3.01
7 8 0.036765 AAATAGTGCGCCACGAGGAA 60.037 50.000 4.18 0.00 39.64 3.36
8 9 0.036765 AAAATAGTGCGCCACGAGGA 60.037 50.000 4.18 0.00 39.64 3.71
9 10 0.802494 AAAAATAGTGCGCCACGAGG 59.198 50.000 4.18 0.00 39.64 4.63
26 27 6.508777 CCGGTAAGAAAATGTCCAAGAAAAA 58.491 36.000 0.00 0.00 0.00 1.94
27 28 5.508320 GCCGGTAAGAAAATGTCCAAGAAAA 60.508 40.000 1.90 0.00 0.00 2.29
28 29 4.022676 GCCGGTAAGAAAATGTCCAAGAAA 60.023 41.667 1.90 0.00 0.00 2.52
29 30 3.504520 GCCGGTAAGAAAATGTCCAAGAA 59.495 43.478 1.90 0.00 0.00 2.52
30 31 3.078837 GCCGGTAAGAAAATGTCCAAGA 58.921 45.455 1.90 0.00 0.00 3.02
31 32 2.159572 CGCCGGTAAGAAAATGTCCAAG 60.160 50.000 1.90 0.00 0.00 3.61
32 33 1.807742 CGCCGGTAAGAAAATGTCCAA 59.192 47.619 1.90 0.00 0.00 3.53
33 34 1.444836 CGCCGGTAAGAAAATGTCCA 58.555 50.000 1.90 0.00 0.00 4.02
34 35 0.098200 GCGCCGGTAAGAAAATGTCC 59.902 55.000 1.90 0.00 0.00 4.02
35 36 0.247537 CGCGCCGGTAAGAAAATGTC 60.248 55.000 1.90 0.00 0.00 3.06
36 37 1.641123 CCGCGCCGGTAAGAAAATGT 61.641 55.000 1.90 0.00 42.73 2.71
37 38 1.061887 CCGCGCCGGTAAGAAAATG 59.938 57.895 1.90 0.00 42.73 2.32
38 39 2.110352 CCCGCGCCGGTAAGAAAAT 61.110 57.895 15.38 0.00 46.80 1.82
39 40 2.743149 CCCGCGCCGGTAAGAAAA 60.743 61.111 15.38 0.00 46.80 2.29
52 53 3.652539 TAGCGTACCAACAGCCCGC 62.653 63.158 0.00 0.00 44.35 6.13
53 54 0.461339 ATTAGCGTACCAACAGCCCG 60.461 55.000 0.00 0.00 0.00 6.13
54 55 1.014352 CATTAGCGTACCAACAGCCC 58.986 55.000 0.00 0.00 0.00 5.19
55 56 1.396996 CACATTAGCGTACCAACAGCC 59.603 52.381 0.00 0.00 0.00 4.85
56 57 1.202031 GCACATTAGCGTACCAACAGC 60.202 52.381 0.00 0.00 0.00 4.40
57 58 2.346803 AGCACATTAGCGTACCAACAG 58.653 47.619 0.00 0.00 40.15 3.16
58 59 2.465860 AGCACATTAGCGTACCAACA 57.534 45.000 0.00 0.00 40.15 3.33
59 60 2.284417 GCTAGCACATTAGCGTACCAAC 59.716 50.000 10.63 0.00 36.97 3.77
60 61 2.546778 GCTAGCACATTAGCGTACCAA 58.453 47.619 10.63 0.00 36.97 3.67
61 62 2.218953 GCTAGCACATTAGCGTACCA 57.781 50.000 10.63 0.00 36.97 3.25
81 82 2.099062 CGTTCTGAGCCGCAATGC 59.901 61.111 0.00 0.00 0.00 3.56
89 90 1.004440 AGTTCCAGGCGTTCTGAGC 60.004 57.895 9.03 0.00 46.18 4.26
90 91 0.318441 TCAGTTCCAGGCGTTCTGAG 59.682 55.000 9.03 1.38 46.18 3.35
91 92 0.976641 ATCAGTTCCAGGCGTTCTGA 59.023 50.000 9.03 0.00 46.18 3.27
92 93 1.081892 CATCAGTTCCAGGCGTTCTG 58.918 55.000 1.70 1.70 43.00 3.02
93 94 0.976641 TCATCAGTTCCAGGCGTTCT 59.023 50.000 0.00 0.00 0.00 3.01
94 95 1.808411 TTCATCAGTTCCAGGCGTTC 58.192 50.000 0.00 0.00 0.00 3.95
95 96 2.270352 TTTCATCAGTTCCAGGCGTT 57.730 45.000 0.00 0.00 0.00 4.84
96 97 2.270352 TTTTCATCAGTTCCAGGCGT 57.730 45.000 0.00 0.00 0.00 5.68
97 98 3.855689 AATTTTCATCAGTTCCAGGCG 57.144 42.857 0.00 0.00 0.00 5.52
98 99 6.038356 CACATAATTTTCATCAGTTCCAGGC 58.962 40.000 0.00 0.00 0.00 4.85
99 100 6.406177 CCCACATAATTTTCATCAGTTCCAGG 60.406 42.308 0.00 0.00 0.00 4.45
100 101 6.153340 ACCCACATAATTTTCATCAGTTCCAG 59.847 38.462 0.00 0.00 0.00 3.86
101 102 6.015918 ACCCACATAATTTTCATCAGTTCCA 58.984 36.000 0.00 0.00 0.00 3.53
102 103 6.405842 GGACCCACATAATTTTCATCAGTTCC 60.406 42.308 0.00 0.00 0.00 3.62
103 104 6.405842 GGGACCCACATAATTTTCATCAGTTC 60.406 42.308 5.33 0.00 0.00 3.01
104 105 5.422012 GGGACCCACATAATTTTCATCAGTT 59.578 40.000 5.33 0.00 0.00 3.16
105 106 4.956075 GGGACCCACATAATTTTCATCAGT 59.044 41.667 5.33 0.00 0.00 3.41
106 107 5.520376 GGGACCCACATAATTTTCATCAG 57.480 43.478 5.33 0.00 0.00 2.90
124 125 3.921119 AAAAATTCGTTTACGGGGGAC 57.079 42.857 2.09 0.00 40.29 4.46
149 150 9.359653 CCTAATATTGAATGGAGGATTGTTTCT 57.640 33.333 0.00 0.00 0.00 2.52
150 151 9.136323 ACCTAATATTGAATGGAGGATTGTTTC 57.864 33.333 6.69 0.00 0.00 2.78
157 158 9.225682 AGTCTTTACCTAATATTGAATGGAGGA 57.774 33.333 6.69 0.00 0.00 3.71
158 159 9.853177 AAGTCTTTACCTAATATTGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
168 169 9.787435 TGTGTGTTTGAAGTCTTTACCTAATAT 57.213 29.630 0.00 0.00 0.00 1.28
169 170 9.787435 ATGTGTGTTTGAAGTCTTTACCTAATA 57.213 29.630 0.00 0.00 0.00 0.98
170 171 8.567948 CATGTGTGTTTGAAGTCTTTACCTAAT 58.432 33.333 0.00 0.00 0.00 1.73
171 172 7.012894 CCATGTGTGTTTGAAGTCTTTACCTAA 59.987 37.037 0.00 0.00 0.00 2.69
172 173 6.485313 CCATGTGTGTTTGAAGTCTTTACCTA 59.515 38.462 0.00 0.00 0.00 3.08
173 174 5.299279 CCATGTGTGTTTGAAGTCTTTACCT 59.701 40.000 0.00 0.00 0.00 3.08
174 175 5.067283 ACCATGTGTGTTTGAAGTCTTTACC 59.933 40.000 0.00 0.00 0.00 2.85
175 176 5.971202 CACCATGTGTGTTTGAAGTCTTTAC 59.029 40.000 6.25 0.00 40.26 2.01
176 177 5.883115 TCACCATGTGTGTTTGAAGTCTTTA 59.117 36.000 12.26 0.00 45.61 1.85
177 178 4.704540 TCACCATGTGTGTTTGAAGTCTTT 59.295 37.500 12.26 0.00 45.61 2.52
178 179 4.269183 TCACCATGTGTGTTTGAAGTCTT 58.731 39.130 12.26 0.00 45.61 3.01
179 180 3.884895 TCACCATGTGTGTTTGAAGTCT 58.115 40.909 12.26 0.00 45.61 3.24
180 181 4.096382 AGTTCACCATGTGTGTTTGAAGTC 59.904 41.667 12.26 0.00 45.61 3.01
181 182 4.016444 AGTTCACCATGTGTGTTTGAAGT 58.984 39.130 12.26 2.95 45.61 3.01
182 183 4.336433 AGAGTTCACCATGTGTGTTTGAAG 59.664 41.667 12.26 0.00 45.61 3.02
186 187 6.959639 AATTAGAGTTCACCATGTGTGTTT 57.040 33.333 12.26 2.59 45.61 2.83
196 197 7.417496 AACGAGTACAAAATTAGAGTTCACC 57.583 36.000 0.00 0.00 0.00 4.02
209 210 9.058174 TGATGGATTAAAGAAAACGAGTACAAA 57.942 29.630 0.00 0.00 0.00 2.83
210 211 8.610248 TGATGGATTAAAGAAAACGAGTACAA 57.390 30.769 0.00 0.00 0.00 2.41
211 212 8.664798 CATGATGGATTAAAGAAAACGAGTACA 58.335 33.333 0.00 0.00 0.00 2.90
246 247 3.350833 AGTTCCTTCATCCTTCATGTGC 58.649 45.455 0.00 0.00 33.66 4.57
293 295 9.142014 TGGAAGAAAGGATGAATCAACTTTAAA 57.858 29.630 13.65 0.00 33.66 1.52
304 306 8.576442 GTTTTAGTTCATGGAAGAAAGGATGAA 58.424 33.333 0.00 0.00 33.46 2.57
315 317 4.518970 GCTGGTCAGTTTTAGTTCATGGAA 59.481 41.667 0.00 0.00 0.00 3.53
318 320 3.745975 TCGCTGGTCAGTTTTAGTTCATG 59.254 43.478 0.00 0.00 0.00 3.07
344 346 4.913335 ATGCAGGATTCAATTAGCACAG 57.087 40.909 0.00 0.00 34.54 3.66
366 368 2.838736 ACAAGCAGAACTCGAACATGT 58.161 42.857 0.00 0.00 0.00 3.21
422 424 5.826737 CAGTATTCTGGGATGATGCTTCTTT 59.173 40.000 0.88 0.00 37.97 2.52
436 438 7.230712 AGGACCACTTTAAAAACAGTATTCTGG 59.769 37.037 4.24 0.00 45.14 3.86
437 439 8.076178 CAGGACCACTTTAAAAACAGTATTCTG 58.924 37.037 0.00 0.00 46.18 3.02
445 447 5.194432 TGCTACAGGACCACTTTAAAAACA 58.806 37.500 0.00 0.00 0.00 2.83
451 453 4.425180 TGTTTGCTACAGGACCACTTTA 57.575 40.909 0.00 0.00 31.68 1.85
452 454 3.290948 TGTTTGCTACAGGACCACTTT 57.709 42.857 0.00 0.00 31.68 2.66
457 459 4.150897 TCCATATGTTTGCTACAGGACC 57.849 45.455 1.24 0.00 40.83 4.46
459 461 5.045942 TCAGTTCCATATGTTTGCTACAGGA 60.046 40.000 1.24 0.00 40.83 3.86
460 462 5.185454 TCAGTTCCATATGTTTGCTACAGG 58.815 41.667 1.24 0.00 40.83 4.00
467 469 8.279970 TGGTAGAATTCAGTTCCATATGTTTG 57.720 34.615 8.44 0.00 37.56 2.93
468 470 8.739972 GTTGGTAGAATTCAGTTCCATATGTTT 58.260 33.333 8.44 0.00 37.56 2.83
471 473 7.864108 TGTTGGTAGAATTCAGTTCCATATG 57.136 36.000 8.44 0.00 37.56 1.78
501 528 1.270305 CGAGCCAAACAGGACTGAGAA 60.270 52.381 6.29 0.00 41.22 2.87
517 546 1.599542 GTCATGGCCATTACTTCGAGC 59.400 52.381 17.92 0.87 0.00 5.03
520 549 5.947228 ATAATGTCATGGCCATTACTTCG 57.053 39.130 26.33 11.32 37.54 3.79
610 642 3.336509 TTTTCCACAAAATGAGGGGGA 57.663 42.857 0.00 0.00 0.00 4.81
612 644 4.687901 ACTTTTTCCACAAAATGAGGGG 57.312 40.909 0.00 0.00 33.09 4.79
624 656 4.285003 TCGATACTCCCTCAACTTTTTCCA 59.715 41.667 0.00 0.00 0.00 3.53
625 657 4.828829 TCGATACTCCCTCAACTTTTTCC 58.171 43.478 0.00 0.00 0.00 3.13
626 658 5.699458 TGTTCGATACTCCCTCAACTTTTTC 59.301 40.000 0.00 0.00 0.00 2.29
727 829 3.344137 ATAAGCTGGGGTGCGTGGG 62.344 63.158 0.00 0.00 38.13 4.61
728 830 2.114670 CATAAGCTGGGGTGCGTGG 61.115 63.158 0.00 0.00 38.13 4.94
729 831 2.114670 CCATAAGCTGGGGTGCGTG 61.115 63.158 0.00 0.00 41.82 5.34
730 832 2.272146 CCATAAGCTGGGGTGCGT 59.728 61.111 0.00 0.00 41.82 5.24
731 833 3.211963 GCCATAAGCTGGGGTGCG 61.212 66.667 0.00 0.00 46.06 5.34
732 834 2.834968 GGCCATAAGCTGGGGTGC 60.835 66.667 0.00 0.00 46.06 5.01
749 852 2.316361 TTCAAGCCACGCGTGTTGTG 62.316 55.000 34.81 26.98 38.97 3.33
753 856 0.040425 GAAATTCAAGCCACGCGTGT 60.040 50.000 34.81 17.45 38.97 4.49
761 864 3.078891 AGGAGGTCTGAAATTCAAGCC 57.921 47.619 0.00 2.46 0.00 4.35
762 865 4.093556 CGTAAGGAGGTCTGAAATTCAAGC 59.906 45.833 0.00 0.00 0.00 4.01
775 878 1.163554 GTCGTCAGACGTAAGGAGGT 58.836 55.000 22.16 0.00 43.14 3.85
886 1000 1.071071 TGACACCTTCCAACCCGTAAG 59.929 52.381 0.00 0.00 0.00 2.34
936 2112 7.483059 GTGTTCTTCTATGGTTGTACGTACTAC 59.517 40.741 25.77 25.77 0.00 2.73
937 2113 7.174772 TGTGTTCTTCTATGGTTGTACGTACTA 59.825 37.037 25.12 16.12 0.00 1.82
938 2114 6.016024 TGTGTTCTTCTATGGTTGTACGTACT 60.016 38.462 25.12 8.34 0.00 2.73
939 2115 6.088616 GTGTGTTCTTCTATGGTTGTACGTAC 59.911 42.308 18.90 18.90 0.00 3.67
940 2116 6.151691 GTGTGTTCTTCTATGGTTGTACGTA 58.848 40.000 0.00 0.00 0.00 3.57
941 2117 4.986659 GTGTGTTCTTCTATGGTTGTACGT 59.013 41.667 0.00 0.00 0.00 3.57
942 2118 4.986034 TGTGTGTTCTTCTATGGTTGTACG 59.014 41.667 0.00 0.00 0.00 3.67
951 2127 4.273480 GTGTTGCAGTGTGTGTTCTTCTAT 59.727 41.667 0.00 0.00 0.00 1.98
1022 2202 1.135731 GAGACGAGGAGCACGTGAG 59.864 63.158 22.23 4.94 43.97 3.51
1125 2305 3.292500 GAGAACGGACCGGGTCACC 62.293 68.421 27.32 11.94 33.68 4.02
1296 2477 3.655810 CTGCACTGACTCGGAGCCC 62.656 68.421 4.58 0.00 0.00 5.19
1297 2478 2.125753 CTGCACTGACTCGGAGCC 60.126 66.667 4.58 0.00 0.00 4.70
1462 2643 1.080025 CCTTGTCGACGGGGAGTTC 60.080 63.158 18.12 0.00 0.00 3.01
1908 3095 1.383799 CCACAGGAAAGGATGCCCA 59.616 57.895 0.00 0.00 33.88 5.36
1911 3098 1.026718 CGACCCACAGGAAAGGATGC 61.027 60.000 0.00 0.00 36.73 3.91
1914 3101 0.761323 TGACGACCCACAGGAAAGGA 60.761 55.000 0.00 0.00 36.73 3.36
1993 3180 1.918293 ATGTCACGAAGAGCCCCCA 60.918 57.895 0.00 0.00 0.00 4.96
2046 3233 1.079819 CGTGATGAAGCACCCGACT 60.080 57.895 0.00 0.00 35.37 4.18
2059 3246 2.359107 CCACCTGCAGTGCGTGAT 60.359 61.111 20.65 0.00 45.83 3.06
2133 3320 1.380302 GTTGGTGGGCTGGTCTGAT 59.620 57.895 0.00 0.00 0.00 2.90
2145 3332 0.179235 CGACGTATTTGGCGTTGGTG 60.179 55.000 0.00 0.00 43.04 4.17
2178 3365 1.454847 TTTCACCTGCACACCCACC 60.455 57.895 0.00 0.00 0.00 4.61
2220 3407 2.673341 TCTCTGACGCACCTCGCT 60.673 61.111 0.00 0.00 43.23 4.93
2252 3439 0.741221 CTTCGTCCTGTAGCCCTTGC 60.741 60.000 0.00 0.00 37.95 4.01
2338 3525 2.949644 CAAGTTTGGAAAGGAAGTCGGT 59.050 45.455 0.00 0.00 0.00 4.69
2365 3552 6.494842 ACATGTGTTTAATTATGTGCGGATC 58.505 36.000 0.00 0.00 32.90 3.36
2366 3553 6.094742 TGACATGTGTTTAATTATGTGCGGAT 59.905 34.615 1.15 0.00 34.18 4.18
2402 3591 3.173965 AGACAAGGGAAACTAGCTAGCA 58.826 45.455 20.91 1.89 0.00 3.49
2428 3649 7.307337 GGCATACAAAAGAGGAAAACACAAATG 60.307 37.037 0.00 0.00 0.00 2.32
2441 3662 6.321848 TGCATGATATGGCATACAAAAGAG 57.678 37.500 9.83 0.00 34.58 2.85
2476 3700 2.041701 ACAAACAAGCCAGGCAGAAAT 58.958 42.857 15.80 0.00 0.00 2.17
2477 3701 1.484038 ACAAACAAGCCAGGCAGAAA 58.516 45.000 15.80 0.00 0.00 2.52
2478 3702 1.953686 GTACAAACAAGCCAGGCAGAA 59.046 47.619 15.80 0.00 0.00 3.02
2512 3736 6.727824 AAGAAACATGTGACCTTAGATTCG 57.272 37.500 0.00 0.00 0.00 3.34
2554 3778 1.608590 CCCAACAACACTGTGTCCATC 59.391 52.381 14.68 0.00 35.37 3.51
2566 3792 1.008538 CACTTCGCAGCCCAACAAC 60.009 57.895 0.00 0.00 0.00 3.32
2567 3793 0.749818 TTCACTTCGCAGCCCAACAA 60.750 50.000 0.00 0.00 0.00 2.83
2577 3803 0.029300 TGCAAGCTGTTTCACTTCGC 59.971 50.000 0.00 0.00 0.00 4.70
2601 3827 6.306987 TCTCAATGGAGGAAAAGCTTACTTT 58.693 36.000 0.00 0.00 43.53 2.66
2715 3950 1.907255 GGCTAGTAAGGTTGACACCCT 59.093 52.381 0.00 0.00 45.63 4.34
2771 4022 6.985645 ACTTGCTTGCAATTATCACTTTCAAA 59.014 30.769 8.55 0.00 0.00 2.69
2783 4034 7.938563 TCGTTTTATTTACTTGCTTGCAATT 57.061 28.000 8.55 6.00 0.00 2.32
2828 4079 6.000891 TCACAATCTCGATGAAACCTTTTG 57.999 37.500 0.00 0.00 0.00 2.44
2838 4089 7.902387 ATTCTCCATAATCACAATCTCGATG 57.098 36.000 0.00 0.00 0.00 3.84
2841 4092 8.715998 CCTTTATTCTCCATAATCACAATCTCG 58.284 37.037 0.00 0.00 0.00 4.04
2857 4108 9.495572 AGTTATGGATTTCGATCCTTTATTCTC 57.504 33.333 6.62 0.00 41.29 2.87
2858 4109 9.853177 AAGTTATGGATTTCGATCCTTTATTCT 57.147 29.630 6.62 0.00 41.29 2.40
2892 4143 3.006677 GGTGCTCCCATAGGGCAA 58.993 61.111 0.00 0.00 43.94 4.52
2906 4157 2.494073 GGTCAAGAGAGTGACTAGGGTG 59.506 54.545 5.40 0.00 45.98 4.61
2931 4184 1.686110 GTCGGGAGGATGTGGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
2940 4193 2.682136 TCGGCAATGTCGGGAGGA 60.682 61.111 7.59 0.00 0.00 3.71
2967 4220 2.886862 TGCACCATTGGTTTGTCAAG 57.113 45.000 5.34 0.00 31.02 3.02
2969 4222 1.343789 CCATGCACCATTGGTTTGTCA 59.656 47.619 5.34 2.65 31.02 3.58
3010 4263 6.172630 TGTGTGCTTCTCATGTACATATGTT 58.827 36.000 14.77 0.00 33.11 2.71
3011 4264 5.733676 TGTGTGCTTCTCATGTACATATGT 58.266 37.500 13.93 13.93 33.11 2.29
3051 4304 9.715121 AATTTTATGTCGTGAGAGGTTAAACTA 57.285 29.630 0.00 0.00 43.49 2.24
3081 4334 6.072783 GCTTCTCAAGTTTGCCAGATATATCC 60.073 42.308 9.18 0.00 0.00 2.59
3082 4335 6.709846 AGCTTCTCAAGTTTGCCAGATATATC 59.290 38.462 4.42 4.42 0.00 1.63
3083 4336 6.599445 AGCTTCTCAAGTTTGCCAGATATAT 58.401 36.000 0.00 0.00 0.00 0.86
3084 4337 5.994250 AGCTTCTCAAGTTTGCCAGATATA 58.006 37.500 0.00 0.00 0.00 0.86
3085 4338 4.853007 AGCTTCTCAAGTTTGCCAGATAT 58.147 39.130 0.00 0.00 0.00 1.63
3086 4339 4.292186 AGCTTCTCAAGTTTGCCAGATA 57.708 40.909 0.00 0.00 0.00 1.98
3087 4340 3.151912 AGCTTCTCAAGTTTGCCAGAT 57.848 42.857 0.00 0.00 0.00 2.90
3088 4341 2.620115 CAAGCTTCTCAAGTTTGCCAGA 59.380 45.455 0.00 0.00 41.62 3.86
3089 4342 2.620115 TCAAGCTTCTCAAGTTTGCCAG 59.380 45.455 0.00 0.00 45.72 4.85
3090 4343 2.653726 TCAAGCTTCTCAAGTTTGCCA 58.346 42.857 0.00 0.00 45.72 4.92
3091 4344 3.930634 ATCAAGCTTCTCAAGTTTGCC 57.069 42.857 0.00 0.00 45.72 4.52
3092 4345 4.614946 ACAATCAAGCTTCTCAAGTTTGC 58.385 39.130 0.00 0.00 45.72 3.68
3093 4346 6.854892 CACTACAATCAAGCTTCTCAAGTTTG 59.145 38.462 0.00 6.52 46.96 2.93
3094 4347 6.016777 CCACTACAATCAAGCTTCTCAAGTTT 60.017 38.462 0.00 0.00 31.70 2.66
3095 4348 5.471456 CCACTACAATCAAGCTTCTCAAGTT 59.529 40.000 0.00 0.00 0.00 2.66
3096 4349 4.999950 CCACTACAATCAAGCTTCTCAAGT 59.000 41.667 0.00 0.00 0.00 3.16
3097 4350 5.240891 TCCACTACAATCAAGCTTCTCAAG 58.759 41.667 0.00 0.00 0.00 3.02
3098 4351 5.227569 TCCACTACAATCAAGCTTCTCAA 57.772 39.130 0.00 0.00 0.00 3.02
3099 4352 4.890158 TCCACTACAATCAAGCTTCTCA 57.110 40.909 0.00 0.00 0.00 3.27
3100 4353 4.997395 TGTTCCACTACAATCAAGCTTCTC 59.003 41.667 0.00 0.00 0.00 2.87
3101 4354 4.973168 TGTTCCACTACAATCAAGCTTCT 58.027 39.130 0.00 0.00 0.00 2.85
3102 4355 5.886960 ATGTTCCACTACAATCAAGCTTC 57.113 39.130 0.00 0.00 0.00 3.86
3103 4356 6.151144 GGTAATGTTCCACTACAATCAAGCTT 59.849 38.462 0.00 0.00 0.00 3.74
3104 4357 5.648092 GGTAATGTTCCACTACAATCAAGCT 59.352 40.000 0.00 0.00 0.00 3.74
3105 4358 5.648092 AGGTAATGTTCCACTACAATCAAGC 59.352 40.000 0.00 0.00 0.00 4.01
3106 4359 6.878923 TGAGGTAATGTTCCACTACAATCAAG 59.121 38.462 0.00 0.00 0.00 3.02
3107 4360 6.774673 TGAGGTAATGTTCCACTACAATCAA 58.225 36.000 0.00 0.00 0.00 2.57
3108 4361 6.367374 TGAGGTAATGTTCCACTACAATCA 57.633 37.500 0.00 0.00 0.00 2.57
3109 4362 7.103641 TCTTGAGGTAATGTTCCACTACAATC 58.896 38.462 0.00 0.00 0.00 2.67
3110 4363 7.016153 TCTTGAGGTAATGTTCCACTACAAT 57.984 36.000 0.00 0.00 0.00 2.71
3111 4364 6.428083 TCTTGAGGTAATGTTCCACTACAA 57.572 37.500 0.00 0.00 0.00 2.41
3112 4365 6.013725 ACATCTTGAGGTAATGTTCCACTACA 60.014 38.462 0.00 0.00 29.51 2.74
3113 4366 6.407202 ACATCTTGAGGTAATGTTCCACTAC 58.593 40.000 0.00 0.00 29.51 2.73
3114 4367 6.212589 TGACATCTTGAGGTAATGTTCCACTA 59.787 38.462 0.00 0.00 33.91 2.74
3115 4368 5.013079 TGACATCTTGAGGTAATGTTCCACT 59.987 40.000 0.00 0.00 33.91 4.00
3116 4369 5.245531 TGACATCTTGAGGTAATGTTCCAC 58.754 41.667 0.00 0.00 33.91 4.02
3117 4370 5.248248 TCTGACATCTTGAGGTAATGTTCCA 59.752 40.000 0.00 0.00 33.91 3.53
3118 4371 5.734720 TCTGACATCTTGAGGTAATGTTCC 58.265 41.667 0.00 0.00 33.91 3.62
3119 4372 6.183360 GCTTCTGACATCTTGAGGTAATGTTC 60.183 42.308 0.00 0.00 33.91 3.18
3120 4373 5.645497 GCTTCTGACATCTTGAGGTAATGTT 59.355 40.000 0.00 0.00 33.91 2.71
3121 4374 5.181748 GCTTCTGACATCTTGAGGTAATGT 58.818 41.667 0.00 0.00 36.37 2.71
3122 4375 5.181009 TGCTTCTGACATCTTGAGGTAATG 58.819 41.667 0.00 0.00 0.00 1.90
3123 4376 5.426689 TGCTTCTGACATCTTGAGGTAAT 57.573 39.130 0.00 0.00 0.00 1.89
3124 4377 4.890158 TGCTTCTGACATCTTGAGGTAA 57.110 40.909 0.00 0.00 0.00 2.85
3125 4378 6.737720 ATATGCTTCTGACATCTTGAGGTA 57.262 37.500 0.00 0.00 0.00 3.08
3126 4379 3.996921 ATGCTTCTGACATCTTGAGGT 57.003 42.857 0.00 0.00 0.00 3.85
3127 4380 7.119407 CCAATATATGCTTCTGACATCTTGAGG 59.881 40.741 0.00 0.00 0.00 3.86
3128 4381 7.876582 TCCAATATATGCTTCTGACATCTTGAG 59.123 37.037 0.00 0.00 0.00 3.02
3129 4382 7.738847 TCCAATATATGCTTCTGACATCTTGA 58.261 34.615 0.00 0.00 0.00 3.02
3130 4383 7.974482 TCCAATATATGCTTCTGACATCTTG 57.026 36.000 0.00 0.00 0.00 3.02
3148 4401 9.905713 GCTTCCATGGTTTCTATATATCCAATA 57.094 33.333 12.58 0.00 0.00 1.90
3149 4402 8.618385 AGCTTCCATGGTTTCTATATATCCAAT 58.382 33.333 12.58 0.00 0.00 3.16
3150 4403 7.988937 AGCTTCCATGGTTTCTATATATCCAA 58.011 34.615 12.58 0.00 0.00 3.53
3151 4404 7.459125 AGAGCTTCCATGGTTTCTATATATCCA 59.541 37.037 12.58 0.00 0.00 3.41
3152 4405 7.856415 AGAGCTTCCATGGTTTCTATATATCC 58.144 38.462 12.58 0.00 0.00 2.59
3154 4407 9.775539 TCTAGAGCTTCCATGGTTTCTATATAT 57.224 33.333 12.58 0.00 0.00 0.86
3155 4408 9.249053 CTCTAGAGCTTCCATGGTTTCTATATA 57.751 37.037 12.58 1.54 0.00 0.86
3156 4409 7.952930 TCTCTAGAGCTTCCATGGTTTCTATAT 59.047 37.037 15.35 0.00 0.00 0.86
3157 4410 7.231722 GTCTCTAGAGCTTCCATGGTTTCTATA 59.768 40.741 15.35 7.67 0.00 1.31
3158 4411 6.041523 GTCTCTAGAGCTTCCATGGTTTCTAT 59.958 42.308 15.35 6.92 0.00 1.98
3159 4412 5.361285 GTCTCTAGAGCTTCCATGGTTTCTA 59.639 44.000 15.35 12.84 0.00 2.10
3160 4413 4.161377 GTCTCTAGAGCTTCCATGGTTTCT 59.839 45.833 15.35 12.41 0.00 2.52
3161 4414 4.438148 GTCTCTAGAGCTTCCATGGTTTC 58.562 47.826 15.35 5.61 0.00 2.78
3162 4415 3.118956 CGTCTCTAGAGCTTCCATGGTTT 60.119 47.826 15.35 0.00 0.00 3.27
3163 4416 2.428890 CGTCTCTAGAGCTTCCATGGTT 59.571 50.000 15.35 0.00 0.00 3.67
3164 4417 2.028130 CGTCTCTAGAGCTTCCATGGT 58.972 52.381 15.35 0.00 0.00 3.55
3165 4418 2.028130 ACGTCTCTAGAGCTTCCATGG 58.972 52.381 15.35 4.97 0.00 3.66
3166 4419 3.880490 ACTACGTCTCTAGAGCTTCCATG 59.120 47.826 15.35 5.54 0.00 3.66
3167 4420 3.880490 CACTACGTCTCTAGAGCTTCCAT 59.120 47.826 15.35 0.09 0.00 3.41
3168 4421 3.271729 CACTACGTCTCTAGAGCTTCCA 58.728 50.000 15.35 0.00 0.00 3.53
3169 4422 2.614983 CCACTACGTCTCTAGAGCTTCC 59.385 54.545 15.35 2.12 0.00 3.46
3170 4423 3.533547 TCCACTACGTCTCTAGAGCTTC 58.466 50.000 15.35 7.05 0.00 3.86
3171 4424 3.630892 TCCACTACGTCTCTAGAGCTT 57.369 47.619 15.35 6.64 0.00 3.74
3172 4425 3.630892 TTCCACTACGTCTCTAGAGCT 57.369 47.619 15.35 2.52 0.00 4.09
3173 4426 3.878103 TGATTCCACTACGTCTCTAGAGC 59.122 47.826 15.35 9.23 0.00 4.09
3174 4427 7.915293 ATATGATTCCACTACGTCTCTAGAG 57.085 40.000 13.98 13.98 0.00 2.43
3175 4428 9.788889 TTTATATGATTCCACTACGTCTCTAGA 57.211 33.333 0.00 0.00 0.00 2.43
3238 4491 8.914011 GGTGCCAAGTTCCTAATATATTCTTTT 58.086 33.333 0.00 0.00 0.00 2.27
3239 4492 7.505923 GGGTGCCAAGTTCCTAATATATTCTTT 59.494 37.037 0.00 0.00 0.00 2.52
3240 4493 7.004691 GGGTGCCAAGTTCCTAATATATTCTT 58.995 38.462 0.00 0.00 0.00 2.52
3241 4494 6.102615 TGGGTGCCAAGTTCCTAATATATTCT 59.897 38.462 0.00 0.00 0.00 2.40
3242 4495 6.303839 TGGGTGCCAAGTTCCTAATATATTC 58.696 40.000 0.00 0.00 0.00 1.75
3243 4496 6.274322 TGGGTGCCAAGTTCCTAATATATT 57.726 37.500 2.97 2.97 0.00 1.28
3244 4497 5.922960 TGGGTGCCAAGTTCCTAATATAT 57.077 39.130 0.00 0.00 0.00 0.86
3245 4498 5.718801 TTGGGTGCCAAGTTCCTAATATA 57.281 39.130 0.00 0.00 38.75 0.86
3246 4499 4.601406 TTGGGTGCCAAGTTCCTAATAT 57.399 40.909 0.00 0.00 38.75 1.28
3247 4500 4.390129 TTTGGGTGCCAAGTTCCTAATA 57.610 40.909 0.00 0.00 44.84 0.98
3248 4501 2.990740 TTGGGTGCCAAGTTCCTAAT 57.009 45.000 0.00 0.00 38.75 1.73
3249 4502 2.757894 TTTGGGTGCCAAGTTCCTAA 57.242 45.000 0.00 0.00 44.84 2.69
3250 4503 2.757894 TTTTGGGTGCCAAGTTCCTA 57.242 45.000 0.00 0.00 44.84 2.94
3251 4504 1.693606 CATTTTGGGTGCCAAGTTCCT 59.306 47.619 0.00 0.00 44.84 3.36
3252 4505 1.416030 ACATTTTGGGTGCCAAGTTCC 59.584 47.619 0.00 0.00 44.84 3.62
3253 4506 2.908688 ACATTTTGGGTGCCAAGTTC 57.091 45.000 0.00 0.00 44.84 3.01
3254 4507 3.709141 ACTTACATTTTGGGTGCCAAGTT 59.291 39.130 0.00 0.00 44.84 2.66
3255 4508 3.069443 CACTTACATTTTGGGTGCCAAGT 59.931 43.478 0.00 0.00 44.84 3.16
3256 4509 3.652274 CACTTACATTTTGGGTGCCAAG 58.348 45.455 0.00 0.00 44.84 3.61
3257 4510 2.224161 GCACTTACATTTTGGGTGCCAA 60.224 45.455 0.00 0.00 44.87 4.52
3258 4511 1.342819 GCACTTACATTTTGGGTGCCA 59.657 47.619 0.00 0.00 44.87 4.92
3259 4512 2.078849 GCACTTACATTTTGGGTGCC 57.921 50.000 0.00 0.00 44.87 5.01
3261 4514 3.820467 TCTCTGCACTTACATTTTGGGTG 59.180 43.478 0.00 0.00 0.00 4.61
3262 4515 4.098914 TCTCTGCACTTACATTTTGGGT 57.901 40.909 0.00 0.00 0.00 4.51
3263 4516 5.183713 TGAATCTCTGCACTTACATTTTGGG 59.816 40.000 0.00 0.00 0.00 4.12
3264 4517 6.258230 TGAATCTCTGCACTTACATTTTGG 57.742 37.500 0.00 0.00 0.00 3.28
3265 4518 7.532571 TCATGAATCTCTGCACTTACATTTTG 58.467 34.615 0.00 0.00 0.00 2.44
3266 4519 7.692460 TCATGAATCTCTGCACTTACATTTT 57.308 32.000 0.00 0.00 0.00 1.82
3267 4520 7.555195 TGATCATGAATCTCTGCACTTACATTT 59.445 33.333 0.00 0.00 35.24 2.32
3268 4521 7.052248 TGATCATGAATCTCTGCACTTACATT 58.948 34.615 0.00 0.00 35.24 2.71
3269 4522 6.589135 TGATCATGAATCTCTGCACTTACAT 58.411 36.000 0.00 0.00 35.24 2.29
3270 4523 5.981174 TGATCATGAATCTCTGCACTTACA 58.019 37.500 0.00 0.00 35.24 2.41
3271 4524 6.314648 TGTTGATCATGAATCTCTGCACTTAC 59.685 38.462 0.00 0.00 35.24 2.34
3272 4525 6.408869 TGTTGATCATGAATCTCTGCACTTA 58.591 36.000 0.00 0.00 35.24 2.24
3273 4526 5.250982 TGTTGATCATGAATCTCTGCACTT 58.749 37.500 0.00 0.00 35.24 3.16
3274 4527 4.840271 TGTTGATCATGAATCTCTGCACT 58.160 39.130 0.00 0.00 35.24 4.40
3275 4528 5.556355 TTGTTGATCATGAATCTCTGCAC 57.444 39.130 0.00 0.00 35.24 4.57
3276 4529 5.106038 GGTTTGTTGATCATGAATCTCTGCA 60.106 40.000 0.00 0.00 35.24 4.41
3277 4530 5.338365 GGTTTGTTGATCATGAATCTCTGC 58.662 41.667 0.00 0.00 35.24 4.26
3278 4531 5.122869 ACGGTTTGTTGATCATGAATCTCTG 59.877 40.000 0.00 0.00 35.24 3.35
3279 4532 5.248640 ACGGTTTGTTGATCATGAATCTCT 58.751 37.500 0.00 0.00 35.24 3.10
3280 4533 5.551760 ACGGTTTGTTGATCATGAATCTC 57.448 39.130 0.00 0.00 35.24 2.75
3281 4534 5.937540 TGTACGGTTTGTTGATCATGAATCT 59.062 36.000 0.00 0.00 35.24 2.40
3282 4535 6.176975 TGTACGGTTTGTTGATCATGAATC 57.823 37.500 0.00 0.00 34.72 2.52
3283 4536 6.567687 TTGTACGGTTTGTTGATCATGAAT 57.432 33.333 0.00 0.00 0.00 2.57
3284 4537 6.378710 TTTGTACGGTTTGTTGATCATGAA 57.621 33.333 0.00 0.00 0.00 2.57
3285 4538 6.378710 TTTTGTACGGTTTGTTGATCATGA 57.621 33.333 0.00 0.00 0.00 3.07
3286 4539 6.915300 TCTTTTTGTACGGTTTGTTGATCATG 59.085 34.615 0.00 0.00 0.00 3.07
3287 4540 7.033530 TCTTTTTGTACGGTTTGTTGATCAT 57.966 32.000 0.00 0.00 0.00 2.45
3288 4541 6.438259 TCTTTTTGTACGGTTTGTTGATCA 57.562 33.333 0.00 0.00 0.00 2.92
3289 4542 7.190871 TCTTCTTTTTGTACGGTTTGTTGATC 58.809 34.615 0.00 0.00 0.00 2.92
3290 4543 7.066525 TCTCTTCTTTTTGTACGGTTTGTTGAT 59.933 33.333 0.00 0.00 0.00 2.57
3291 4544 6.372103 TCTCTTCTTTTTGTACGGTTTGTTGA 59.628 34.615 0.00 0.00 0.00 3.18
3292 4545 6.548171 TCTCTTCTTTTTGTACGGTTTGTTG 58.452 36.000 0.00 0.00 0.00 3.33
3293 4546 6.746745 TCTCTTCTTTTTGTACGGTTTGTT 57.253 33.333 0.00 0.00 0.00 2.83
3294 4547 6.540914 TCATCTCTTCTTTTTGTACGGTTTGT 59.459 34.615 0.00 0.00 0.00 2.83
3295 4548 6.954944 TCATCTCTTCTTTTTGTACGGTTTG 58.045 36.000 0.00 0.00 0.00 2.93
3296 4549 7.282450 ACTTCATCTCTTCTTTTTGTACGGTTT 59.718 33.333 0.00 0.00 0.00 3.27
3297 4550 6.766467 ACTTCATCTCTTCTTTTTGTACGGTT 59.234 34.615 0.00 0.00 0.00 4.44
3298 4551 6.289064 ACTTCATCTCTTCTTTTTGTACGGT 58.711 36.000 0.00 0.00 0.00 4.83
3299 4552 6.787085 ACTTCATCTCTTCTTTTTGTACGG 57.213 37.500 0.00 0.00 0.00 4.02
3300 4553 9.582223 GTTTACTTCATCTCTTCTTTTTGTACG 57.418 33.333 0.00 0.00 0.00 3.67
3328 4581 9.690913 TTGATTCATTCATGTCCTCTTAAAGAT 57.309 29.630 0.00 0.00 33.34 2.40
3329 4582 9.519191 TTTGATTCATTCATGTCCTCTTAAAGA 57.481 29.630 0.00 0.00 33.34 2.52
3330 4583 9.784680 CTTTGATTCATTCATGTCCTCTTAAAG 57.215 33.333 0.00 0.00 33.34 1.85
3331 4584 8.742777 CCTTTGATTCATTCATGTCCTCTTAAA 58.257 33.333 0.00 0.00 33.34 1.52
3332 4585 7.148018 GCCTTTGATTCATTCATGTCCTCTTAA 60.148 37.037 0.00 0.00 33.34 1.85
3333 4586 6.319658 GCCTTTGATTCATTCATGTCCTCTTA 59.680 38.462 0.00 0.00 33.34 2.10
3334 4587 5.126707 GCCTTTGATTCATTCATGTCCTCTT 59.873 40.000 0.00 0.00 33.34 2.85
3335 4588 4.643784 GCCTTTGATTCATTCATGTCCTCT 59.356 41.667 0.00 0.00 33.34 3.69
3336 4589 4.643784 AGCCTTTGATTCATTCATGTCCTC 59.356 41.667 0.00 0.00 33.34 3.71
3337 4590 4.607239 AGCCTTTGATTCATTCATGTCCT 58.393 39.130 0.00 0.00 33.34 3.85
3338 4591 4.996788 AGCCTTTGATTCATTCATGTCC 57.003 40.909 0.00 0.00 33.34 4.02
3339 4592 7.977853 ACATTTAGCCTTTGATTCATTCATGTC 59.022 33.333 0.00 0.00 33.34 3.06
3340 4593 7.844009 ACATTTAGCCTTTGATTCATTCATGT 58.156 30.769 0.00 0.00 33.34 3.21
3341 4594 8.712285 AACATTTAGCCTTTGATTCATTCATG 57.288 30.769 0.00 0.00 33.34 3.07
3354 4607 9.981114 GCCATTATTACATAAACATTTAGCCTT 57.019 29.630 0.00 0.00 0.00 4.35
3355 4608 9.367160 AGCCATTATTACATAAACATTTAGCCT 57.633 29.630 0.00 0.00 0.00 4.58
3360 4613 9.875708 TCCCTAGCCATTATTACATAAACATTT 57.124 29.630 0.00 0.00 0.00 2.32
3361 4614 9.297037 GTCCCTAGCCATTATTACATAAACATT 57.703 33.333 0.00 0.00 0.00 2.71
3362 4615 7.606456 CGTCCCTAGCCATTATTACATAAACAT 59.394 37.037 0.00 0.00 0.00 2.71
3363 4616 6.932400 CGTCCCTAGCCATTATTACATAAACA 59.068 38.462 0.00 0.00 0.00 2.83
3364 4617 6.370718 CCGTCCCTAGCCATTATTACATAAAC 59.629 42.308 0.00 0.00 0.00 2.01
3365 4618 6.270463 TCCGTCCCTAGCCATTATTACATAAA 59.730 38.462 0.00 0.00 0.00 1.40
3366 4619 5.781306 TCCGTCCCTAGCCATTATTACATAA 59.219 40.000 0.00 0.00 0.00 1.90
3367 4620 5.335261 TCCGTCCCTAGCCATTATTACATA 58.665 41.667 0.00 0.00 0.00 2.29
3368 4621 4.164981 TCCGTCCCTAGCCATTATTACAT 58.835 43.478 0.00 0.00 0.00 2.29
3369 4622 3.578978 TCCGTCCCTAGCCATTATTACA 58.421 45.455 0.00 0.00 0.00 2.41
3370 4623 4.820894 ATCCGTCCCTAGCCATTATTAC 57.179 45.455 0.00 0.00 0.00 1.89
3371 4624 4.841813 TGAATCCGTCCCTAGCCATTATTA 59.158 41.667 0.00 0.00 0.00 0.98
3372 4625 3.650942 TGAATCCGTCCCTAGCCATTATT 59.349 43.478 0.00 0.00 0.00 1.40
3373 4626 3.248024 TGAATCCGTCCCTAGCCATTAT 58.752 45.455 0.00 0.00 0.00 1.28
3374 4627 2.684943 TGAATCCGTCCCTAGCCATTA 58.315 47.619 0.00 0.00 0.00 1.90
3375 4628 1.507140 TGAATCCGTCCCTAGCCATT 58.493 50.000 0.00 0.00 0.00 3.16
3376 4629 3.240670 TGAATCCGTCCCTAGCCAT 57.759 52.632 0.00 0.00 0.00 4.40
3377 4630 4.798585 TGAATCCGTCCCTAGCCA 57.201 55.556 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.